Multiple sequence alignment - TraesCS4B01G217900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G217900 chr4B 100.000 6070 0 0 1 6070 459937830 459943899 0.000000e+00 11210.0
1 TraesCS4B01G217900 chr4B 85.470 117 10 4 405 515 2204891 2204776 1.380000e-21 115.0
2 TraesCS4B01G217900 chr4B 85.470 117 10 4 405 515 2234316 2234201 1.380000e-21 115.0
3 TraesCS4B01G217900 chr4D 94.879 3027 93 22 544 3533 373847296 373850297 0.000000e+00 4674.0
4 TraesCS4B01G217900 chr4D 92.025 1605 71 25 4468 6045 373852875 373854449 0.000000e+00 2202.0
5 TraesCS4B01G217900 chr4D 91.947 832 40 10 3645 4473 373850301 373851108 0.000000e+00 1140.0
6 TraesCS4B01G217900 chr4D 87.869 305 13 6 1 281 373842731 373843035 2.710000e-88 337.0
7 TraesCS4B01G217900 chr4D 88.000 125 12 3 281 403 373843589 373843712 1.760000e-30 145.0
8 TraesCS4B01G217900 chr4D 87.143 70 3 3 453 516 365398519 365398588 2.350000e-09 75.0
9 TraesCS4B01G217900 chr4A 94.562 3016 108 21 554 3534 90601741 90598747 0.000000e+00 4610.0
10 TraesCS4B01G217900 chr4A 93.612 1221 55 13 4471 5684 90595972 90594768 0.000000e+00 1801.0
11 TraesCS4B01G217900 chr4A 93.394 439 27 1 4035 4473 90598334 90597898 0.000000e+00 649.0
12 TraesCS4B01G217900 chr4A 90.819 403 23 9 3645 4045 90598745 90598355 1.500000e-145 527.0
13 TraesCS4B01G217900 chr4A 91.842 380 13 8 5683 6044 90594682 90594303 1.170000e-141 514.0
14 TraesCS4B01G217900 chr4A 88.312 77 9 0 408 484 621692450 621692374 6.480000e-15 93.5
15 TraesCS4B01G217900 chr7B 88.042 1154 82 19 4369 5516 721582341 721581238 0.000000e+00 1315.0
16 TraesCS4B01G217900 chr7B 87.790 819 66 14 3785 4602 721583121 721582336 0.000000e+00 928.0
17 TraesCS4B01G217900 chr7B 87.931 116 11 2 404 516 736090760 736090645 3.820000e-27 134.0
18 TraesCS4B01G217900 chr2B 88.042 1154 82 19 4369 5516 577501101 577499998 0.000000e+00 1315.0
19 TraesCS4B01G217900 chr2B 87.057 819 71 14 3785 4602 577501880 577501096 0.000000e+00 893.0
20 TraesCS4B01G217900 chr2B 95.000 80 4 0 405 484 572324702 572324623 6.390000e-25 126.0
21 TraesCS4B01G217900 chr2B 86.325 117 10 3 405 515 109000329 109000445 8.260000e-24 122.0
22 TraesCS4B01G217900 chr2B 85.833 120 11 3 402 515 548950755 548950874 8.260000e-24 122.0
23 TraesCS4B01G217900 chr6B 88.838 439 39 6 3785 4223 32205340 32204912 1.160000e-146 531.0
24 TraesCS4B01G217900 chr7A 95.062 81 4 0 404 484 53967143 53967223 1.780000e-25 128.0
25 TraesCS4B01G217900 chr3B 94.048 84 5 0 402 485 276470644 276470727 1.780000e-25 128.0
26 TraesCS4B01G217900 chr1A 85.593 118 11 3 405 516 41745205 41745088 1.070000e-22 119.0
27 TraesCS4B01G217900 chr5B 89.394 66 3 1 998 1059 613275484 613275419 5.040000e-11 80.5
28 TraesCS4B01G217900 chr5B 89.286 56 5 1 3591 3646 352308993 352309047 1.090000e-07 69.4
29 TraesCS4B01G217900 chr5B 91.489 47 4 0 3590 3636 351484212 351484258 1.410000e-06 65.8
30 TraesCS4B01G217900 chr5D 93.617 47 3 0 3592 3638 82952704 82952750 3.040000e-08 71.3
31 TraesCS4B01G217900 chr5D 93.478 46 2 1 3599 3644 541589779 541589823 3.930000e-07 67.6
32 TraesCS4B01G217900 chr2D 93.478 46 2 1 3599 3644 535728612 535728656 3.930000e-07 67.6
33 TraesCS4B01G217900 chr5A 95.122 41 2 0 3598 3638 391518596 391518556 1.410000e-06 65.8
34 TraesCS4B01G217900 chr5A 97.297 37 1 0 3602 3638 277726540 277726504 5.080000e-06 63.9
35 TraesCS4B01G217900 chr6D 97.297 37 1 0 3602 3638 126435251 126435287 5.080000e-06 63.9
36 TraesCS4B01G217900 chr3D 97.297 37 1 0 3602 3638 479627440 479627404 5.080000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G217900 chr4B 459937830 459943899 6069 False 11210.0 11210 100.0000 1 6070 1 chr4B.!!$F1 6069
1 TraesCS4B01G217900 chr4D 373842731 373854449 11718 False 1699.6 4674 90.9440 1 6045 5 chr4D.!!$F2 6044
2 TraesCS4B01G217900 chr4A 90594303 90601741 7438 True 1620.2 4610 92.8458 554 6044 5 chr4A.!!$R2 5490
3 TraesCS4B01G217900 chr7B 721581238 721583121 1883 True 1121.5 1315 87.9160 3785 5516 2 chr7B.!!$R2 1731
4 TraesCS4B01G217900 chr2B 577499998 577501880 1882 True 1104.0 1315 87.5495 3785 5516 2 chr2B.!!$R2 1731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 4797 0.035739 GAGTCCGGCAAGGTACCAAA 59.964 55.0 15.94 0.0 41.99 3.28 F
2253 6414 0.036022 TCATTGATGCCGGTGTGTCA 59.964 50.0 1.90 0.0 0.00 3.58 F
2661 6830 0.721718 GAAGGTCCGAACTTCATGCG 59.278 55.0 19.46 0.0 42.92 4.73 F
3585 7767 0.108585 GTCTGCCAGGGTTGACTCAA 59.891 55.0 0.00 0.0 0.00 3.02 F
4433 8655 0.100146 GCCTTCGGTAGTCGGTAGTG 59.900 60.0 0.00 0.0 39.77 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2647 6816 0.250124 ACCAACGCATGAAGTTCGGA 60.250 50.000 19.31 0.00 0.0 4.55 R
3566 7748 0.108585 TTGAGTCAACCCTGGCAGAC 59.891 55.000 17.94 5.84 0.0 3.51 R
3596 7778 0.111832 TGGGGTAGTGACTCGTGACT 59.888 55.000 0.00 0.00 0.0 3.41 R
4934 11333 1.072806 AGGACACTGAATGCTGCTTGA 59.927 47.619 0.00 0.00 0.0 3.02 R
6049 12559 0.881118 AACAGGCGCAAATACACCAG 59.119 50.000 10.83 0.00 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.024414 GATGTTGCCGCCCTTAGAAAT 58.976 47.619 0.00 0.00 0.00 2.17
49 50 6.146347 GCCCTTAGAAATCTATGAACGATGTC 59.854 42.308 0.00 0.00 0.00 3.06
60 61 4.185413 CGATGTCGTCAACTGGGG 57.815 61.111 0.00 0.00 34.11 4.96
62 63 0.175760 CGATGTCGTCAACTGGGGAT 59.824 55.000 0.00 0.00 34.11 3.85
63 64 1.802880 CGATGTCGTCAACTGGGGATC 60.803 57.143 0.00 0.00 34.11 3.36
64 65 1.482593 GATGTCGTCAACTGGGGATCT 59.517 52.381 0.00 0.00 0.00 2.75
97 111 3.944015 GCTTTGCCTAGATGACATGACTT 59.056 43.478 0.00 0.00 0.00 3.01
121 144 2.358582 TGGTAATCATGCCTCATTTGCG 59.641 45.455 0.00 0.00 31.58 4.85
161 184 2.905996 ATGCTTGTCCTCCCGCCAA 61.906 57.895 0.00 0.00 0.00 4.52
257 282 7.453393 ACAGATACATCTTTCAACAAGAAGGA 58.547 34.615 0.00 0.00 45.05 3.36
262 287 6.799512 ACATCTTTCAACAAGAAGGACAAAG 58.200 36.000 0.00 0.00 43.97 2.77
263 288 6.603201 ACATCTTTCAACAAGAAGGACAAAGA 59.397 34.615 0.00 0.00 43.97 2.52
271 296 6.625873 ACAAGAAGGACAAAGAAAAGCTAG 57.374 37.500 0.00 0.00 0.00 3.42
297 876 6.091441 GGTGTTCATAGAGCTTCAGTAACTTG 59.909 42.308 0.00 0.00 0.00 3.16
298 877 6.868864 GTGTTCATAGAGCTTCAGTAACTTGA 59.131 38.462 0.00 0.00 0.00 3.02
303 883 9.755804 TCATAGAGCTTCAGTAACTTGAATATG 57.244 33.333 0.00 0.00 36.55 1.78
314 894 9.599866 CAGTAACTTGAATATGGTCAGATTGTA 57.400 33.333 0.00 0.00 0.00 2.41
352 932 1.030488 CCCATCTGTTGAGCCAGCAG 61.030 60.000 11.15 11.15 42.61 4.24
355 935 3.620061 TCTGTTGAGCCAGCAGAAG 57.380 52.632 15.70 0.01 45.76 2.85
371 951 3.735240 GCAGAAGACAATCTCTATCAGCG 59.265 47.826 0.00 0.00 0.00 5.18
383 964 6.581171 TCTCTATCAGCGTCATTGATGTAT 57.419 37.500 7.67 2.72 36.07 2.29
386 967 8.239998 TCTCTATCAGCGTCATTGATGTATTAG 58.760 37.037 7.67 4.93 36.07 1.73
388 969 5.276461 TCAGCGTCATTGATGTATTAGGT 57.724 39.130 7.67 0.00 0.00 3.08
391 972 6.257849 TCAGCGTCATTGATGTATTAGGTTTC 59.742 38.462 7.67 0.00 0.00 2.78
399 980 1.275856 TGTATTAGGTTTCGTGGCCGT 59.724 47.619 0.00 0.00 35.01 5.68
403 984 0.037975 TAGGTTTCGTGGCCGTCTTC 60.038 55.000 0.00 0.00 35.01 2.87
404 985 1.301479 GGTTTCGTGGCCGTCTTCT 60.301 57.895 0.00 0.00 35.01 2.85
405 986 0.037975 GGTTTCGTGGCCGTCTTCTA 60.038 55.000 0.00 0.00 35.01 2.10
406 987 1.066136 GTTTCGTGGCCGTCTTCTAC 58.934 55.000 0.00 0.00 35.01 2.59
407 988 0.963962 TTTCGTGGCCGTCTTCTACT 59.036 50.000 0.00 0.00 35.01 2.57
408 989 0.524862 TTCGTGGCCGTCTTCTACTC 59.475 55.000 0.00 0.00 35.01 2.59
409 990 1.139095 CGTGGCCGTCTTCTACTCC 59.861 63.158 0.00 0.00 0.00 3.85
410 991 1.516423 GTGGCCGTCTTCTACTCCC 59.484 63.158 0.00 0.00 0.00 4.30
411 992 0.971447 GTGGCCGTCTTCTACTCCCT 60.971 60.000 0.00 0.00 0.00 4.20
412 993 0.683504 TGGCCGTCTTCTACTCCCTC 60.684 60.000 0.00 0.00 0.00 4.30
413 994 1.393487 GGCCGTCTTCTACTCCCTCC 61.393 65.000 0.00 0.00 0.00 4.30
414 995 1.726533 GCCGTCTTCTACTCCCTCCG 61.727 65.000 0.00 0.00 0.00 4.63
415 996 0.394080 CCGTCTTCTACTCCCTCCGT 60.394 60.000 0.00 0.00 0.00 4.69
416 997 1.461559 CGTCTTCTACTCCCTCCGTT 58.538 55.000 0.00 0.00 0.00 4.44
417 998 1.401199 CGTCTTCTACTCCCTCCGTTC 59.599 57.143 0.00 0.00 0.00 3.95
418 999 1.401199 GTCTTCTACTCCCTCCGTTCG 59.599 57.143 0.00 0.00 0.00 3.95
419 1000 1.280133 TCTTCTACTCCCTCCGTTCGA 59.720 52.381 0.00 0.00 0.00 3.71
420 1001 2.089980 CTTCTACTCCCTCCGTTCGAA 58.910 52.381 0.00 0.00 0.00 3.71
421 1002 2.205022 TCTACTCCCTCCGTTCGAAA 57.795 50.000 0.00 0.00 0.00 3.46
422 1003 2.517959 TCTACTCCCTCCGTTCGAAAA 58.482 47.619 0.00 0.00 0.00 2.29
423 1004 2.892852 TCTACTCCCTCCGTTCGAAAAA 59.107 45.455 0.00 0.00 0.00 1.94
502 1083 9.334947 AGATACATTGATGACAAGTATTTCTGG 57.665 33.333 0.00 0.00 39.46 3.86
503 1084 9.330063 GATACATTGATGACAAGTATTTCTGGA 57.670 33.333 0.00 0.00 39.46 3.86
504 1085 7.383102 ACATTGATGACAAGTATTTCTGGAC 57.617 36.000 0.00 0.00 39.46 4.02
505 1086 6.092670 ACATTGATGACAAGTATTTCTGGACG 59.907 38.462 0.00 0.00 39.46 4.79
506 1087 5.400066 TGATGACAAGTATTTCTGGACGA 57.600 39.130 0.00 0.00 0.00 4.20
507 1088 5.789521 TGATGACAAGTATTTCTGGACGAA 58.210 37.500 0.00 0.00 0.00 3.85
508 1089 5.869344 TGATGACAAGTATTTCTGGACGAAG 59.131 40.000 0.00 0.00 32.21 3.79
509 1090 4.566004 TGACAAGTATTTCTGGACGAAGG 58.434 43.478 0.00 0.00 32.21 3.46
510 1091 3.933332 GACAAGTATTTCTGGACGAAGGG 59.067 47.826 0.00 0.00 32.21 3.95
511 1092 3.581332 ACAAGTATTTCTGGACGAAGGGA 59.419 43.478 0.00 0.00 32.21 4.20
512 1093 4.184629 CAAGTATTTCTGGACGAAGGGAG 58.815 47.826 0.00 0.00 32.21 4.30
515 1096 3.889520 ATTTCTGGACGAAGGGAGTAC 57.110 47.619 0.00 0.00 32.21 2.73
524 1105 1.891450 CGAAGGGAGTACCACTGTCCT 60.891 57.143 0.00 0.00 43.89 3.85
525 1106 1.550976 GAAGGGAGTACCACTGTCCTG 59.449 57.143 0.00 0.00 43.89 3.86
532 1113 2.132762 GTACCACTGTCCTGAAACACG 58.867 52.381 0.00 0.00 0.00 4.49
533 1114 0.814010 ACCACTGTCCTGAAACACGC 60.814 55.000 0.00 0.00 0.00 5.34
534 1115 1.564622 CACTGTCCTGAAACACGCG 59.435 57.895 3.53 3.53 0.00 6.01
600 4733 2.165030 GCATTGGAGTCCATGTCAAAGG 59.835 50.000 14.00 0.00 31.53 3.11
663 4797 0.035739 GAGTCCGGCAAGGTACCAAA 59.964 55.000 15.94 0.00 41.99 3.28
664 4798 0.036306 AGTCCGGCAAGGTACCAAAG 59.964 55.000 15.94 4.20 41.99 2.77
667 4801 0.250989 CCGGCAAGGTACCAAAGGAA 60.251 55.000 15.94 0.00 34.51 3.36
668 4802 1.611519 CGGCAAGGTACCAAAGGAAA 58.388 50.000 15.94 0.00 0.00 3.13
669 4803 1.957877 CGGCAAGGTACCAAAGGAAAA 59.042 47.619 15.94 0.00 0.00 2.29
726 4863 2.049802 CGGCAAACTGGCAAGCAG 60.050 61.111 0.94 0.00 43.94 4.24
931 5077 0.605589 CTTCCCGAGTCCAACAACCC 60.606 60.000 0.00 0.00 0.00 4.11
1647 5808 3.654173 GAACCCCTCGGTGCCGTAC 62.654 68.421 10.60 0.00 43.71 3.67
1668 5829 1.086634 GGCTCTTCCACGATGCTGAC 61.087 60.000 0.00 0.00 34.01 3.51
1678 5839 0.877071 CGATGCTGACCTGTTTGCTT 59.123 50.000 0.00 0.00 0.00 3.91
1698 5859 1.576421 GTTTCGTGGCTTGCTCCTG 59.424 57.895 0.00 0.00 0.00 3.86
1734 5895 1.496857 TGGGAACTCATGGTTGTTGGA 59.503 47.619 4.55 0.00 38.41 3.53
2038 6199 0.966875 TGGGCAATCACCAGCATCAC 60.967 55.000 0.00 0.00 33.23 3.06
2110 6271 5.392595 GCAATCAATAAGTTTTCGCCCACTA 60.393 40.000 0.00 0.00 0.00 2.74
2211 6372 2.292828 ATGTGCCAACTACAAAGCCT 57.707 45.000 0.00 0.00 0.00 4.58
2253 6414 0.036022 TCATTGATGCCGGTGTGTCA 59.964 50.000 1.90 0.00 0.00 3.58
2335 6496 3.400255 GAGCTAACGACCAACTTCCTTT 58.600 45.455 0.00 0.00 0.00 3.11
2364 6525 2.628178 TGGGCCATATCTGAGAACTACG 59.372 50.000 0.00 0.00 0.00 3.51
2525 6693 8.329502 GGATTTATATAGGTAAGCCAGAACCAT 58.670 37.037 0.00 0.00 38.30 3.55
2597 6766 4.373156 AACAGGGATTCACAAGCTAACT 57.627 40.909 0.00 0.00 0.00 2.24
2647 6816 8.940397 TCTTTATCAGAAAATTCTTGGAAGGT 57.060 30.769 0.00 0.00 34.74 3.50
2650 6819 4.072131 TCAGAAAATTCTTGGAAGGTCCG 58.928 43.478 0.00 0.00 35.63 4.79
2661 6830 0.721718 GAAGGTCCGAACTTCATGCG 59.278 55.000 19.46 0.00 42.92 4.73
2716 6885 5.453903 GCAAGATCAGCTAAGGTTATGGAGA 60.454 44.000 0.00 0.00 0.00 3.71
2873 7044 6.944557 AAGTTAACTGTCACTTGCAAAAAC 57.055 33.333 9.34 0.00 31.80 2.43
2879 7050 7.897575 AACTGTCACTTGCAAAAACAAATAA 57.102 28.000 0.00 0.00 0.00 1.40
2883 7054 7.914465 TGTCACTTGCAAAAACAAATAAATCC 58.086 30.769 0.00 0.00 0.00 3.01
2949 7121 6.256321 GTCGTTTTCTGTTAGGACAAACTACA 59.744 38.462 0.00 0.00 34.85 2.74
2980 7152 6.163476 AGCTCACGAACAACTCACATTATTA 58.837 36.000 0.00 0.00 0.00 0.98
2981 7153 6.818644 AGCTCACGAACAACTCACATTATTAT 59.181 34.615 0.00 0.00 0.00 1.28
2982 7154 7.334421 AGCTCACGAACAACTCACATTATTATT 59.666 33.333 0.00 0.00 0.00 1.40
3021 7193 5.116180 GTGGCTATGTGCATAACTAAGACA 58.884 41.667 0.00 0.00 45.15 3.41
3238 7411 3.849911 TGCAAGAAGACTTCTATCCGTG 58.150 45.455 18.00 12.80 39.61 4.94
3272 7445 1.742880 CTGCCAGGTCACCACGATG 60.743 63.158 0.00 0.00 0.00 3.84
3291 7464 5.964887 GATGGAGATCGAAAAGAGAGTTG 57.035 43.478 0.00 0.00 0.00 3.16
3306 7479 6.927294 AGAGAGTTGGAGTTTGTTTAGTTG 57.073 37.500 0.00 0.00 0.00 3.16
3364 7538 7.415653 GGTCTCCAATTAAGCTAATTCCAGTTG 60.416 40.741 0.00 0.00 36.29 3.16
3476 7658 7.341445 AGTGTAAGTCTAAATAGCCTCAGAG 57.659 40.000 0.00 0.00 0.00 3.35
3539 7721 4.579127 GGTGAGTGCCCACTGTTT 57.421 55.556 5.53 0.00 42.66 2.83
3540 7722 2.807247 GGTGAGTGCCCACTGTTTT 58.193 52.632 5.53 0.00 42.66 2.43
3541 7723 1.111277 GGTGAGTGCCCACTGTTTTT 58.889 50.000 5.53 0.00 42.66 1.94
3558 7740 3.894351 TTTTTAGTCGCGCGATTAGTC 57.106 42.857 37.03 22.37 0.00 2.59
3570 7752 2.893837 CGATTAGTCGCGACTAGTCTG 58.106 52.381 42.58 35.68 43.94 3.51
3571 7753 2.641912 GATTAGTCGCGACTAGTCTGC 58.358 52.381 41.34 27.79 43.26 4.26
3572 7754 0.731417 TTAGTCGCGACTAGTCTGCC 59.269 55.000 38.41 13.60 43.92 4.85
3573 7755 0.392060 TAGTCGCGACTAGTCTGCCA 60.392 55.000 37.98 20.69 42.54 4.92
3574 7756 1.226435 GTCGCGACTAGTCTGCCAG 60.226 63.158 31.12 15.89 0.00 4.85
3575 7757 2.103143 CGCGACTAGTCTGCCAGG 59.897 66.667 24.20 13.02 0.00 4.45
3576 7758 2.496817 GCGACTAGTCTGCCAGGG 59.503 66.667 20.34 4.47 0.00 4.45
3577 7759 2.352032 GCGACTAGTCTGCCAGGGT 61.352 63.158 20.34 0.00 0.00 4.34
3578 7760 1.889530 GCGACTAGTCTGCCAGGGTT 61.890 60.000 20.34 0.00 0.00 4.11
3579 7761 0.108615 CGACTAGTCTGCCAGGGTTG 60.109 60.000 20.34 0.00 0.00 3.77
3580 7762 1.267121 GACTAGTCTGCCAGGGTTGA 58.733 55.000 15.91 0.00 0.00 3.18
3581 7763 0.977395 ACTAGTCTGCCAGGGTTGAC 59.023 55.000 0.00 5.21 0.00 3.18
3582 7764 1.270907 CTAGTCTGCCAGGGTTGACT 58.729 55.000 15.62 15.62 41.81 3.41
3583 7765 1.205893 CTAGTCTGCCAGGGTTGACTC 59.794 57.143 15.04 0.00 39.94 3.36
3584 7766 0.764369 AGTCTGCCAGGGTTGACTCA 60.764 55.000 8.73 0.00 35.13 3.41
3585 7767 0.108585 GTCTGCCAGGGTTGACTCAA 59.891 55.000 0.00 0.00 0.00 3.02
3586 7768 0.843309 TCTGCCAGGGTTGACTCAAA 59.157 50.000 0.00 0.00 0.00 2.69
3587 7769 0.954452 CTGCCAGGGTTGACTCAAAC 59.046 55.000 0.00 0.00 0.00 2.93
3593 7775 2.928416 GGTTGACTCAAACCCTCGG 58.072 57.895 0.00 0.00 43.31 4.63
3594 7776 1.235281 GGTTGACTCAAACCCTCGGC 61.235 60.000 0.00 0.00 43.31 5.54
3595 7777 0.250338 GTTGACTCAAACCCTCGGCT 60.250 55.000 0.00 0.00 0.00 5.52
3596 7778 1.001633 GTTGACTCAAACCCTCGGCTA 59.998 52.381 0.00 0.00 0.00 3.93
3597 7779 0.895530 TGACTCAAACCCTCGGCTAG 59.104 55.000 0.00 0.00 0.00 3.42
3598 7780 0.896226 GACTCAAACCCTCGGCTAGT 59.104 55.000 0.00 0.00 0.00 2.57
3599 7781 0.896226 ACTCAAACCCTCGGCTAGTC 59.104 55.000 0.00 0.00 0.00 2.59
3600 7782 0.895530 CTCAAACCCTCGGCTAGTCA 59.104 55.000 0.00 0.00 0.00 3.41
3601 7783 0.606604 TCAAACCCTCGGCTAGTCAC 59.393 55.000 0.00 0.00 0.00 3.67
3602 7784 0.736325 CAAACCCTCGGCTAGTCACG 60.736 60.000 0.00 0.00 0.00 4.35
3603 7785 0.896940 AAACCCTCGGCTAGTCACGA 60.897 55.000 0.00 0.66 37.56 4.35
3607 7789 4.707791 TCGGCTAGTCACGAGTCA 57.292 55.556 0.00 0.00 34.67 3.41
3608 7790 2.168947 TCGGCTAGTCACGAGTCAC 58.831 57.895 0.00 0.00 34.67 3.67
3609 7791 0.321387 TCGGCTAGTCACGAGTCACT 60.321 55.000 0.00 0.00 34.67 3.41
3610 7792 1.066645 TCGGCTAGTCACGAGTCACTA 60.067 52.381 0.00 0.00 34.67 2.74
3611 7793 1.062294 CGGCTAGTCACGAGTCACTAC 59.938 57.143 0.00 0.00 0.00 2.73
3612 7794 1.401199 GGCTAGTCACGAGTCACTACC 59.599 57.143 0.00 0.00 0.00 3.18
3613 7795 1.401199 GCTAGTCACGAGTCACTACCC 59.599 57.143 0.00 0.00 0.00 3.69
3614 7796 2.015587 CTAGTCACGAGTCACTACCCC 58.984 57.143 0.00 0.00 0.00 4.95
3615 7797 0.111832 AGTCACGAGTCACTACCCCA 59.888 55.000 0.00 0.00 0.00 4.96
3616 7798 0.526662 GTCACGAGTCACTACCCCAG 59.473 60.000 0.00 0.00 0.00 4.45
3617 7799 0.402887 TCACGAGTCACTACCCCAGA 59.597 55.000 0.00 0.00 0.00 3.86
3618 7800 1.202964 TCACGAGTCACTACCCCAGAA 60.203 52.381 0.00 0.00 0.00 3.02
3619 7801 1.067776 CACGAGTCACTACCCCAGAAC 60.068 57.143 0.00 0.00 0.00 3.01
3620 7802 0.170561 CGAGTCACTACCCCAGAACG 59.829 60.000 0.00 0.00 0.00 3.95
3621 7803 1.542492 GAGTCACTACCCCAGAACGA 58.458 55.000 0.00 0.00 0.00 3.85
3622 7804 1.201880 GAGTCACTACCCCAGAACGAC 59.798 57.143 0.00 0.00 0.00 4.34
3623 7805 1.203025 AGTCACTACCCCAGAACGACT 60.203 52.381 0.00 0.00 31.46 4.18
3624 7806 1.201880 GTCACTACCCCAGAACGACTC 59.798 57.143 0.00 0.00 0.00 3.36
3625 7807 1.202964 TCACTACCCCAGAACGACTCA 60.203 52.381 0.00 0.00 0.00 3.41
3626 7808 1.825474 CACTACCCCAGAACGACTCAT 59.175 52.381 0.00 0.00 0.00 2.90
3627 7809 2.100989 ACTACCCCAGAACGACTCATC 58.899 52.381 0.00 0.00 0.00 2.92
3640 7822 3.974585 GACTCATCGACTCGAAAAACC 57.025 47.619 5.00 0.00 39.99 3.27
3641 7823 3.576648 GACTCATCGACTCGAAAAACCT 58.423 45.455 5.00 0.00 39.99 3.50
3642 7824 3.988517 GACTCATCGACTCGAAAAACCTT 59.011 43.478 5.00 0.00 39.99 3.50
3643 7825 3.741344 ACTCATCGACTCGAAAAACCTTG 59.259 43.478 5.00 0.00 39.99 3.61
3695 7877 9.265862 TGTCCTACCAAAATCCATATCAAAATT 57.734 29.630 0.00 0.00 0.00 1.82
3714 7896 6.679327 AAATTAGAATTACGCTTGAGGTCC 57.321 37.500 0.00 0.00 0.00 4.46
3718 7900 5.615925 AGAATTACGCTTGAGGTCCTATT 57.384 39.130 0.00 0.00 0.00 1.73
3719 7901 5.360591 AGAATTACGCTTGAGGTCCTATTG 58.639 41.667 0.00 0.00 0.00 1.90
3720 7902 3.536956 TTACGCTTGAGGTCCTATTGG 57.463 47.619 0.00 0.00 0.00 3.16
3721 7903 1.276622 ACGCTTGAGGTCCTATTGGT 58.723 50.000 0.00 0.00 34.23 3.67
3722 7904 1.066143 ACGCTTGAGGTCCTATTGGTG 60.066 52.381 0.00 0.00 34.23 4.17
3749 7937 5.372343 AGGATGCAACCTAACATGTATGA 57.628 39.130 14.88 0.00 38.65 2.15
3750 7938 5.754782 AGGATGCAACCTAACATGTATGAA 58.245 37.500 14.88 0.00 38.65 2.57
3751 7939 5.590259 AGGATGCAACCTAACATGTATGAAC 59.410 40.000 14.88 0.00 38.65 3.18
3752 7940 5.221048 GGATGCAACCTAACATGTATGAACC 60.221 44.000 5.61 0.00 0.00 3.62
3753 7941 4.917385 TGCAACCTAACATGTATGAACCT 58.083 39.130 0.00 0.00 0.00 3.50
3754 7942 6.056090 TGCAACCTAACATGTATGAACCTA 57.944 37.500 0.00 0.00 0.00 3.08
3755 7943 6.477253 TGCAACCTAACATGTATGAACCTAA 58.523 36.000 0.00 0.00 0.00 2.69
3756 7944 6.373216 TGCAACCTAACATGTATGAACCTAAC 59.627 38.462 0.00 0.00 0.00 2.34
3757 7945 6.373216 GCAACCTAACATGTATGAACCTAACA 59.627 38.462 0.00 0.00 0.00 2.41
3758 7946 7.067008 GCAACCTAACATGTATGAACCTAACAT 59.933 37.037 0.00 0.00 34.22 2.71
3759 7947 9.607988 CAACCTAACATGTATGAACCTAACATA 57.392 33.333 0.00 0.00 32.70 2.29
3761 7949 9.998106 ACCTAACATGTATGAACCTAACATATC 57.002 33.333 0.00 0.00 32.70 1.63
3775 7963 6.767902 ACCTAACATATCTGTTATGCCTTGTG 59.232 38.462 4.34 0.00 44.65 3.33
4100 8322 4.080863 CCAATGAGGCTCCTACTTTGTAGT 60.081 45.833 12.86 0.00 38.44 2.73
4111 8333 5.012251 TCCTACTTTGTAGTGCACACCAATA 59.988 40.000 21.04 9.91 36.69 1.90
4156 8378 6.642540 GCCATTTAATTAGCTTACAGGAATGC 59.357 38.462 0.00 0.00 0.00 3.56
4250 8472 5.248640 ACTATTCTGGCATATGAATTCGGG 58.751 41.667 6.97 0.00 35.01 5.14
4262 8484 5.638596 ATGAATTCGGGTTTAGTTGAACC 57.361 39.130 0.04 0.00 46.70 3.62
4290 8512 5.167845 ACATGTTTTGTGTGACTGGTTTTC 58.832 37.500 0.00 0.00 37.11 2.29
4321 8543 4.223320 TCTTGCAAGAAATCAAACCGAC 57.777 40.909 26.61 0.00 30.73 4.79
4400 8622 5.682212 GCACTGGGATTTTGTTCTGTCTTTT 60.682 40.000 0.00 0.00 0.00 2.27
4433 8655 0.100146 GCCTTCGGTAGTCGGTAGTG 59.900 60.000 0.00 0.00 39.77 2.74
4454 8676 3.181397 GACGGCATTGGATTTTGATGTG 58.819 45.455 0.00 0.00 0.00 3.21
4545 10721 4.850680 TCGGTAATTAGGGCTGTTTGATT 58.149 39.130 0.00 0.00 0.00 2.57
4572 10750 7.227873 CAGTCTACCATTCTCTCTCCTGTATA 58.772 42.308 0.00 0.00 0.00 1.47
4596 10774 1.890979 GACTGGAGGGATGCATGCG 60.891 63.158 14.09 0.17 0.00 4.73
4616 11005 2.156117 CGCGTGAACGGTTGAAGATTTA 59.844 45.455 0.00 0.00 40.23 1.40
4776 11165 9.833179 AAAATGTTTCATCATATAGGGATCCAT 57.167 29.630 15.23 9.63 0.00 3.41
4828 11222 4.413520 ACATACCTATTCTGCCCTCAATGT 59.586 41.667 0.00 0.00 0.00 2.71
4869 11263 7.820872 CCTGATGTTTATTTTCCAATTTCTGCT 59.179 33.333 0.00 0.00 0.00 4.24
5074 11473 3.118038 TCCCAGACAAGTTTGTAGCAGTT 60.118 43.478 0.00 0.00 42.43 3.16
5075 11474 3.251004 CCCAGACAAGTTTGTAGCAGTTC 59.749 47.826 0.00 0.00 42.43 3.01
5085 11486 7.020914 AGTTTGTAGCAGTTCTCTTTTTCTG 57.979 36.000 0.00 0.00 0.00 3.02
5207 11611 7.556733 TCCACAAAGTCTAAAATTTACACGT 57.443 32.000 0.00 0.00 0.00 4.49
5284 11688 7.285401 ACCTTTGTGTCTCACTTTGTATGATTT 59.715 33.333 1.72 0.00 35.11 2.17
5359 11763 3.253188 TCTTGGTTCCTTTTTCATCTGCG 59.747 43.478 0.00 0.00 0.00 5.18
5450 11854 7.902920 ATAAACAGGCATGGTTATTCAGAAT 57.097 32.000 15.62 0.20 45.16 2.40
5474 11878 7.739995 TTTCAGATTGAGGATCTTAAGGAGA 57.260 36.000 1.85 0.00 42.55 3.71
5517 11921 3.853207 AGCTGGATGCCCATCAAATTAT 58.147 40.909 10.17 0.00 42.59 1.28
5523 11927 5.901853 TGGATGCCCATCAAATTATTGGTAA 59.098 36.000 10.17 0.00 39.54 2.85
5557 11961 5.376625 TGCCCTTCCAATATAGTGATGAAC 58.623 41.667 0.79 0.00 0.00 3.18
5739 12231 4.037446 GGATTAAGGGCATGTTTATTCGCA 59.963 41.667 0.00 0.00 0.00 5.10
5796 12288 5.063438 CAGCATGCTTTCTTCAATGGAAATG 59.937 40.000 19.98 0.00 33.12 2.32
5829 12321 2.029623 GAGCTGGTGTTACCGATCCTA 58.970 52.381 0.00 0.00 42.58 2.94
5835 12327 5.448632 GCTGGTGTTACCGATCCTATTTTTG 60.449 44.000 0.00 0.00 42.58 2.44
5862 12360 5.572896 GCATATTGTACAAGTTTGTTGGAGC 59.427 40.000 14.65 2.98 42.35 4.70
5940 12439 7.711339 CCTGTATCTGAATGTAGGTTTACCTTC 59.289 40.741 6.76 2.56 46.09 3.46
5987 12486 7.444183 ACTTATGTTACAGTTGTGTGCATTAGT 59.556 33.333 0.00 9.03 37.82 2.24
5996 12495 6.414694 CAGTTGTGTGCATTAGTGTTTTACTG 59.585 38.462 0.00 0.00 40.65 2.74
5998 12497 7.281324 AGTTGTGTGCATTAGTGTTTTACTGTA 59.719 33.333 0.00 0.00 40.65 2.74
6045 12555 5.494724 GGTTAGTTTCTCCGACCCTTTTAT 58.505 41.667 0.00 0.00 0.00 1.40
6046 12556 5.353400 GGTTAGTTTCTCCGACCCTTTTATG 59.647 44.000 0.00 0.00 0.00 1.90
6047 12557 3.951663 AGTTTCTCCGACCCTTTTATGG 58.048 45.455 0.00 0.00 0.00 2.74
6048 12558 2.413310 TTCTCCGACCCTTTTATGGC 57.587 50.000 0.00 0.00 0.00 4.40
6049 12559 0.544697 TCTCCGACCCTTTTATGGCC 59.455 55.000 0.00 0.00 0.00 5.36
6050 12560 0.546598 CTCCGACCCTTTTATGGCCT 59.453 55.000 3.32 0.00 0.00 5.19
6051 12561 0.254747 TCCGACCCTTTTATGGCCTG 59.745 55.000 3.32 0.00 0.00 4.85
6052 12562 0.751643 CCGACCCTTTTATGGCCTGG 60.752 60.000 3.32 0.00 0.00 4.45
6053 12563 0.034477 CGACCCTTTTATGGCCTGGT 60.034 55.000 3.32 0.00 0.00 4.00
6054 12564 1.474330 GACCCTTTTATGGCCTGGTG 58.526 55.000 3.32 0.00 0.00 4.17
6055 12565 0.783850 ACCCTTTTATGGCCTGGTGT 59.216 50.000 3.32 0.00 0.00 4.16
6056 12566 1.997040 ACCCTTTTATGGCCTGGTGTA 59.003 47.619 3.32 0.00 0.00 2.90
6057 12567 2.585432 ACCCTTTTATGGCCTGGTGTAT 59.415 45.455 3.32 0.00 0.00 2.29
6058 12568 3.012388 ACCCTTTTATGGCCTGGTGTATT 59.988 43.478 3.32 0.00 0.00 1.89
6059 12569 4.030216 CCCTTTTATGGCCTGGTGTATTT 58.970 43.478 3.32 0.00 0.00 1.40
6060 12570 4.141959 CCCTTTTATGGCCTGGTGTATTTG 60.142 45.833 3.32 0.00 0.00 2.32
6061 12571 4.432712 CTTTTATGGCCTGGTGTATTTGC 58.567 43.478 3.32 0.00 0.00 3.68
6062 12572 1.674359 TATGGCCTGGTGTATTTGCG 58.326 50.000 3.32 0.00 0.00 4.85
6063 12573 1.666209 ATGGCCTGGTGTATTTGCGC 61.666 55.000 3.32 0.00 0.00 6.09
6064 12574 2.489751 GCCTGGTGTATTTGCGCC 59.510 61.111 4.18 0.00 39.37 6.53
6065 12575 2.046285 GCCTGGTGTATTTGCGCCT 61.046 57.895 4.18 0.00 39.62 5.52
6066 12576 1.802636 CCTGGTGTATTTGCGCCTG 59.197 57.895 4.18 0.00 39.62 4.85
6067 12577 0.960364 CCTGGTGTATTTGCGCCTGT 60.960 55.000 4.18 0.00 39.62 4.00
6068 12578 0.881118 CTGGTGTATTTGCGCCTGTT 59.119 50.000 4.18 0.00 39.62 3.16
6069 12579 1.269448 CTGGTGTATTTGCGCCTGTTT 59.731 47.619 4.18 0.00 39.62 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.107508 ATGCAGATCCCCAGTTGACG 60.108 55.000 0.00 0.00 0.00 4.35
57 58 0.536915 GCTTCTCCATGCAGATCCCC 60.537 60.000 0.00 0.00 0.00 4.81
60 61 2.223525 GCAAAGCTTCTCCATGCAGATC 60.224 50.000 13.82 0.00 37.00 2.75
62 63 1.171308 GCAAAGCTTCTCCATGCAGA 58.829 50.000 13.82 0.00 37.00 4.26
63 64 0.172803 GGCAAAGCTTCTCCATGCAG 59.827 55.000 18.92 0.00 38.73 4.41
64 65 0.251474 AGGCAAAGCTTCTCCATGCA 60.251 50.000 18.92 0.00 38.73 3.96
97 111 4.381825 GCAAATGAGGCATGATTACCACAA 60.382 41.667 0.00 0.00 30.12 3.33
257 282 4.532834 TGAACACCCTAGCTTTTCTTTGT 58.467 39.130 0.00 0.00 0.00 2.83
262 287 4.572795 GCTCTATGAACACCCTAGCTTTTC 59.427 45.833 0.00 0.00 0.00 2.29
263 288 4.226168 AGCTCTATGAACACCCTAGCTTTT 59.774 41.667 0.00 0.00 35.39 2.27
271 296 3.618690 ACTGAAGCTCTATGAACACCC 57.381 47.619 0.00 0.00 0.00 4.61
352 932 4.926244 TGACGCTGATAGAGATTGTCTTC 58.074 43.478 0.00 0.00 36.64 2.87
355 935 5.284864 TCAATGACGCTGATAGAGATTGTC 58.715 41.667 0.00 0.00 0.00 3.18
371 951 6.715464 CCACGAAACCTAATACATCAATGAC 58.285 40.000 0.00 0.00 0.00 3.06
383 964 0.393820 AAGACGGCCACGAAACCTAA 59.606 50.000 2.24 0.00 44.60 2.69
386 967 0.037975 TAGAAGACGGCCACGAAACC 60.038 55.000 2.24 0.00 44.60 3.27
388 969 0.963962 AGTAGAAGACGGCCACGAAA 59.036 50.000 2.24 0.00 44.60 3.46
399 980 1.280133 TCGAACGGAGGGAGTAGAAGA 59.720 52.381 0.00 0.00 0.00 2.87
403 984 3.308438 TTTTTCGAACGGAGGGAGTAG 57.692 47.619 0.00 0.00 0.00 2.57
476 1057 9.334947 CCAGAAATACTTGTCATCAATGTATCT 57.665 33.333 0.00 0.00 32.44 1.98
477 1058 9.330063 TCCAGAAATACTTGTCATCAATGTATC 57.670 33.333 0.00 0.00 32.44 2.24
478 1059 9.113838 GTCCAGAAATACTTGTCATCAATGTAT 57.886 33.333 0.00 0.00 33.64 2.29
479 1060 7.277760 CGTCCAGAAATACTTGTCATCAATGTA 59.722 37.037 0.00 0.00 32.82 2.29
480 1061 6.092670 CGTCCAGAAATACTTGTCATCAATGT 59.907 38.462 0.00 0.00 32.82 2.71
481 1062 6.313658 TCGTCCAGAAATACTTGTCATCAATG 59.686 38.462 0.00 0.00 32.82 2.82
482 1063 6.406370 TCGTCCAGAAATACTTGTCATCAAT 58.594 36.000 0.00 0.00 32.82 2.57
483 1064 5.789521 TCGTCCAGAAATACTTGTCATCAA 58.210 37.500 0.00 0.00 0.00 2.57
484 1065 5.400066 TCGTCCAGAAATACTTGTCATCA 57.600 39.130 0.00 0.00 0.00 3.07
485 1066 5.292101 CCTTCGTCCAGAAATACTTGTCATC 59.708 44.000 0.00 0.00 38.57 2.92
486 1067 5.178797 CCTTCGTCCAGAAATACTTGTCAT 58.821 41.667 0.00 0.00 38.57 3.06
487 1068 4.562757 CCCTTCGTCCAGAAATACTTGTCA 60.563 45.833 0.00 0.00 38.57 3.58
488 1069 3.933332 CCCTTCGTCCAGAAATACTTGTC 59.067 47.826 0.00 0.00 38.57 3.18
489 1070 3.581332 TCCCTTCGTCCAGAAATACTTGT 59.419 43.478 0.00 0.00 38.57 3.16
490 1071 4.184629 CTCCCTTCGTCCAGAAATACTTG 58.815 47.826 0.00 0.00 38.57 3.16
491 1072 3.838903 ACTCCCTTCGTCCAGAAATACTT 59.161 43.478 0.00 0.00 38.57 2.24
492 1073 3.442076 ACTCCCTTCGTCCAGAAATACT 58.558 45.455 0.00 0.00 38.57 2.12
493 1074 3.889520 ACTCCCTTCGTCCAGAAATAC 57.110 47.619 0.00 0.00 38.57 1.89
494 1075 3.703052 GGTACTCCCTTCGTCCAGAAATA 59.297 47.826 0.00 0.00 38.57 1.40
495 1076 2.500504 GGTACTCCCTTCGTCCAGAAAT 59.499 50.000 0.00 0.00 38.57 2.17
496 1077 1.897802 GGTACTCCCTTCGTCCAGAAA 59.102 52.381 0.00 0.00 38.57 2.52
497 1078 1.203087 TGGTACTCCCTTCGTCCAGAA 60.203 52.381 0.00 0.00 37.31 3.02
498 1079 0.406750 TGGTACTCCCTTCGTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86
499 1080 0.531200 GTGGTACTCCCTTCGTCCAG 59.469 60.000 0.00 0.00 0.00 3.86
500 1081 0.113776 AGTGGTACTCCCTTCGTCCA 59.886 55.000 0.00 0.00 0.00 4.02
501 1082 0.531200 CAGTGGTACTCCCTTCGTCC 59.469 60.000 0.00 0.00 0.00 4.79
502 1083 1.201880 GACAGTGGTACTCCCTTCGTC 59.798 57.143 0.00 0.00 0.00 4.20
503 1084 1.254954 GACAGTGGTACTCCCTTCGT 58.745 55.000 0.00 0.00 0.00 3.85
504 1085 0.531200 GGACAGTGGTACTCCCTTCG 59.469 60.000 0.00 0.00 0.00 3.79
505 1086 1.550976 CAGGACAGTGGTACTCCCTTC 59.449 57.143 0.00 0.00 35.42 3.46
506 1087 1.149288 TCAGGACAGTGGTACTCCCTT 59.851 52.381 0.00 0.00 35.42 3.95
507 1088 0.784495 TCAGGACAGTGGTACTCCCT 59.216 55.000 0.00 0.00 35.42 4.20
508 1089 1.640917 TTCAGGACAGTGGTACTCCC 58.359 55.000 0.00 0.00 35.42 4.30
509 1090 2.367567 TGTTTCAGGACAGTGGTACTCC 59.632 50.000 0.00 0.00 35.42 3.85
510 1091 3.391049 GTGTTTCAGGACAGTGGTACTC 58.609 50.000 0.00 0.00 35.42 2.59
511 1092 2.223971 CGTGTTTCAGGACAGTGGTACT 60.224 50.000 0.00 0.00 39.40 2.73
512 1093 2.132762 CGTGTTTCAGGACAGTGGTAC 58.867 52.381 0.00 0.00 0.00 3.34
515 1096 1.831389 CGCGTGTTTCAGGACAGTGG 61.831 60.000 0.00 0.00 0.00 4.00
524 1105 1.059979 GATACATTCGCGCGTGTTTCA 59.940 47.619 30.98 13.04 0.00 2.69
525 1106 1.591394 GGATACATTCGCGCGTGTTTC 60.591 52.381 30.98 27.32 0.00 2.78
534 1115 4.806342 AATGTTTACGGGATACATTCGC 57.194 40.909 3.52 0.00 37.85 4.70
663 4797 2.486727 GGTTCCACTCGGTTCTTTTCCT 60.487 50.000 0.00 0.00 0.00 3.36
664 4798 1.878088 GGTTCCACTCGGTTCTTTTCC 59.122 52.381 0.00 0.00 0.00 3.13
667 4801 0.466963 ACGGTTCCACTCGGTTCTTT 59.533 50.000 0.00 0.00 0.00 2.52
668 4802 0.249741 CACGGTTCCACTCGGTTCTT 60.250 55.000 0.00 0.00 0.00 2.52
669 4803 1.366366 CACGGTTCCACTCGGTTCT 59.634 57.895 0.00 0.00 0.00 3.01
726 4863 2.992543 TGCACTTCTGTTTTGTGTTTGC 59.007 40.909 0.00 0.00 34.52 3.68
948 5095 0.613260 CGTCAGTGGGGAATTGGAGA 59.387 55.000 0.00 0.00 0.00 3.71
949 5096 1.026718 GCGTCAGTGGGGAATTGGAG 61.027 60.000 0.00 0.00 0.00 3.86
951 5098 2.046285 GGCGTCAGTGGGGAATTGG 61.046 63.158 0.00 0.00 0.00 3.16
1647 5808 2.892425 GCATCGTGGAAGAGCCCG 60.892 66.667 0.00 0.00 34.97 6.13
1668 5829 1.596954 CCACGAAACGAAGCAAACAGG 60.597 52.381 0.00 0.00 0.00 4.00
1678 5839 1.959226 GGAGCAAGCCACGAAACGA 60.959 57.895 0.00 0.00 0.00 3.85
1698 5859 0.890996 CCCAAAGAGTCCACAGGTGC 60.891 60.000 0.00 0.00 0.00 5.01
2038 6199 2.431782 GTGTCCCATTGGATCCATTTGG 59.568 50.000 26.74 26.74 44.28 3.28
2110 6271 9.730705 TCTCAACTTGATTGAATTCAATAGACT 57.269 29.630 29.05 11.82 46.80 3.24
2211 6372 6.719829 TGAGTCTATTTAGAACAGAGGTGTCA 59.280 38.462 0.00 0.00 35.08 3.58
2253 6414 1.938585 TGGACTCCTCAATTCTCGGT 58.061 50.000 0.00 0.00 0.00 4.69
2364 6525 0.765510 AACTCCCTTCCAGTGGTGTC 59.234 55.000 9.54 0.00 0.00 3.67
2597 6766 7.969536 TCAGTGGTGAAACAAAAATGAAAAA 57.030 28.000 0.00 0.00 39.98 1.94
2647 6816 0.250124 ACCAACGCATGAAGTTCGGA 60.250 50.000 19.31 0.00 0.00 4.55
2650 6819 1.399727 CGGAACCAACGCATGAAGTTC 60.400 52.381 0.00 0.00 36.85 3.01
2661 6830 1.292992 ACGTCTTTGTCGGAACCAAC 58.707 50.000 0.00 0.00 0.00 3.77
2716 6885 2.153645 TCAACATTCATGCGAGCTTGT 58.846 42.857 2.14 0.00 0.00 3.16
2800 6969 4.956700 TCCATCTCTTTGAGAAGATACCGT 59.043 41.667 1.20 0.00 42.27 4.83
2949 7121 5.177696 GTGAGTTGTTCGTGAGCTTATCTTT 59.822 40.000 0.00 0.00 0.00 2.52
2982 7154 9.657419 CACATAGCCACATATACTGAATTATCA 57.343 33.333 0.00 0.00 0.00 2.15
2995 7167 6.929049 GTCTTAGTTATGCACATAGCCACATA 59.071 38.462 0.00 0.00 44.83 2.29
2996 7168 5.760253 GTCTTAGTTATGCACATAGCCACAT 59.240 40.000 0.00 0.00 44.83 3.21
2997 7169 5.116180 GTCTTAGTTATGCACATAGCCACA 58.884 41.667 0.00 0.00 44.83 4.17
2998 7170 5.116180 TGTCTTAGTTATGCACATAGCCAC 58.884 41.667 0.00 0.00 44.83 5.01
2999 7171 5.128663 TCTGTCTTAGTTATGCACATAGCCA 59.871 40.000 0.00 0.00 44.83 4.75
3000 7172 5.601662 TCTGTCTTAGTTATGCACATAGCC 58.398 41.667 0.00 0.00 44.83 3.93
3001 7173 6.088749 CGATCTGTCTTAGTTATGCACATAGC 59.911 42.308 0.00 0.00 45.96 2.97
3002 7174 7.363431 TCGATCTGTCTTAGTTATGCACATAG 58.637 38.462 0.00 0.00 0.00 2.23
3021 7193 8.674263 AAAAAGCTTATGATTCAGATCGATCT 57.326 30.769 22.32 22.32 37.72 2.75
3208 7381 8.770438 ATAGAAGTCTTCTTGCAACTTAGAAG 57.230 34.615 20.03 16.52 45.55 2.85
3238 7411 0.179097 GCAGGCTGCTAGTGTCCTAC 60.179 60.000 31.37 0.00 40.96 3.18
3272 7445 4.081917 ACTCCAACTCTCTTTTCGATCTCC 60.082 45.833 0.00 0.00 0.00 3.71
3291 7464 7.511959 AATCTTCCTCAACTAAACAAACTCC 57.488 36.000 0.00 0.00 0.00 3.85
3306 7479 7.687941 TGATAACCAACTCAAAATCTTCCTC 57.312 36.000 0.00 0.00 0.00 3.71
3364 7538 6.183360 CCAGTACTAGACTCCATGACTAAACC 60.183 46.154 0.00 0.00 35.64 3.27
3476 7658 2.125512 CTACCGTGGCAGTGAGGC 60.126 66.667 0.00 0.00 44.50 4.70
3508 7690 4.338400 GGCACTCACCCTAATTTAATCACC 59.662 45.833 0.00 0.00 0.00 4.02
3538 7720 2.277057 CGACTAATCGCGCGACTAAAAA 59.723 45.455 37.37 11.87 42.43 1.94
3539 7721 1.841944 CGACTAATCGCGCGACTAAAA 59.158 47.619 37.37 17.18 42.43 1.52
3540 7722 1.459756 CGACTAATCGCGCGACTAAA 58.540 50.000 37.37 19.05 42.43 1.85
3541 7723 3.138296 CGACTAATCGCGCGACTAA 57.862 52.632 37.37 21.69 42.43 2.24
3542 7724 4.886982 CGACTAATCGCGCGACTA 57.113 55.556 37.37 28.49 42.43 2.59
3551 7733 2.602694 GGCAGACTAGTCGCGACTAATC 60.603 54.545 37.34 37.34 42.72 1.75
3552 7734 1.334243 GGCAGACTAGTCGCGACTAAT 59.666 52.381 39.33 34.41 42.72 1.73
3553 7735 0.731417 GGCAGACTAGTCGCGACTAA 59.269 55.000 39.33 26.57 42.72 2.24
3554 7736 0.392060 TGGCAGACTAGTCGCGACTA 60.392 55.000 38.33 38.33 42.54 2.59
3555 7737 1.649390 CTGGCAGACTAGTCGCGACT 61.649 60.000 40.17 40.17 45.02 4.18
3556 7738 1.226435 CTGGCAGACTAGTCGCGAC 60.226 63.158 31.30 31.30 32.66 5.19
3557 7739 2.407428 CCTGGCAGACTAGTCGCGA 61.407 63.158 23.69 20.83 32.66 5.87
3558 7740 2.103143 CCTGGCAGACTAGTCGCG 59.897 66.667 23.69 17.72 32.66 5.87
3559 7741 1.889530 AACCCTGGCAGACTAGTCGC 61.890 60.000 23.05 23.05 34.09 5.19
3560 7742 0.108615 CAACCCTGGCAGACTAGTCG 60.109 60.000 17.94 12.80 34.09 4.18
3561 7743 1.066787 GTCAACCCTGGCAGACTAGTC 60.067 57.143 17.94 15.41 0.00 2.59
3562 7744 0.977395 GTCAACCCTGGCAGACTAGT 59.023 55.000 17.94 0.00 0.00 2.57
3563 7745 1.205893 GAGTCAACCCTGGCAGACTAG 59.794 57.143 17.94 4.14 41.10 2.57
3564 7746 1.267121 GAGTCAACCCTGGCAGACTA 58.733 55.000 17.94 0.00 41.10 2.59
3565 7747 0.764369 TGAGTCAACCCTGGCAGACT 60.764 55.000 17.94 11.26 43.50 3.24
3566 7748 0.108585 TTGAGTCAACCCTGGCAGAC 59.891 55.000 17.94 5.84 0.00 3.51
3567 7749 0.843309 TTTGAGTCAACCCTGGCAGA 59.157 50.000 17.94 0.00 0.00 4.26
3568 7750 0.954452 GTTTGAGTCAACCCTGGCAG 59.046 55.000 7.75 7.75 0.00 4.85
3569 7751 0.467290 GGTTTGAGTCAACCCTGGCA 60.467 55.000 12.00 0.00 0.00 4.92
3570 7752 1.179174 GGGTTTGAGTCAACCCTGGC 61.179 60.000 24.85 7.18 34.34 4.85
3571 7753 0.478507 AGGGTTTGAGTCAACCCTGG 59.521 55.000 29.95 0.00 40.65 4.45
3572 7754 1.878102 CGAGGGTTTGAGTCAACCCTG 60.878 57.143 33.08 24.69 41.49 4.45
3573 7755 0.396811 CGAGGGTTTGAGTCAACCCT 59.603 55.000 30.50 30.50 42.89 4.34
3574 7756 0.605589 CCGAGGGTTTGAGTCAACCC 60.606 60.000 24.79 24.79 36.02 4.11
3575 7757 1.235281 GCCGAGGGTTTGAGTCAACC 61.235 60.000 4.68 10.12 0.00 3.77
3576 7758 0.250338 AGCCGAGGGTTTGAGTCAAC 60.250 55.000 4.68 1.11 0.00 3.18
3577 7759 1.275291 CTAGCCGAGGGTTTGAGTCAA 59.725 52.381 0.08 0.08 0.00 3.18
3578 7760 0.895530 CTAGCCGAGGGTTTGAGTCA 59.104 55.000 0.00 0.00 0.00 3.41
3579 7761 0.896226 ACTAGCCGAGGGTTTGAGTC 59.104 55.000 0.00 0.00 0.00 3.36
3580 7762 0.896226 GACTAGCCGAGGGTTTGAGT 59.104 55.000 0.00 0.00 0.00 3.41
3581 7763 0.895530 TGACTAGCCGAGGGTTTGAG 59.104 55.000 0.00 0.00 0.00 3.02
3582 7764 0.606604 GTGACTAGCCGAGGGTTTGA 59.393 55.000 0.00 0.00 0.00 2.69
3583 7765 0.736325 CGTGACTAGCCGAGGGTTTG 60.736 60.000 0.00 0.00 0.00 2.93
3584 7766 0.896940 TCGTGACTAGCCGAGGGTTT 60.897 55.000 0.00 0.00 0.00 3.27
3585 7767 1.303888 TCGTGACTAGCCGAGGGTT 60.304 57.895 0.00 0.00 0.00 4.11
3586 7768 1.749638 CTCGTGACTAGCCGAGGGT 60.750 63.158 15.53 0.00 45.12 4.34
3587 7769 3.111939 CTCGTGACTAGCCGAGGG 58.888 66.667 15.53 0.00 45.12 4.30
3590 7772 0.321387 AGTGACTCGTGACTAGCCGA 60.321 55.000 0.00 0.00 0.00 5.54
3591 7773 1.062294 GTAGTGACTCGTGACTAGCCG 59.938 57.143 0.00 0.00 30.20 5.52
3592 7774 1.401199 GGTAGTGACTCGTGACTAGCC 59.599 57.143 12.73 6.95 40.31 3.93
3593 7775 1.401199 GGGTAGTGACTCGTGACTAGC 59.599 57.143 14.63 14.63 43.64 3.42
3594 7776 2.015587 GGGGTAGTGACTCGTGACTAG 58.984 57.143 0.00 0.00 30.20 2.57
3595 7777 1.352017 TGGGGTAGTGACTCGTGACTA 59.648 52.381 0.00 0.00 0.00 2.59
3596 7778 0.111832 TGGGGTAGTGACTCGTGACT 59.888 55.000 0.00 0.00 0.00 3.41
3597 7779 0.526662 CTGGGGTAGTGACTCGTGAC 59.473 60.000 0.00 0.00 0.00 3.67
3598 7780 0.402887 TCTGGGGTAGTGACTCGTGA 59.597 55.000 0.00 0.00 0.00 4.35
3599 7781 1.067776 GTTCTGGGGTAGTGACTCGTG 60.068 57.143 0.00 0.00 0.00 4.35
3600 7782 1.254954 GTTCTGGGGTAGTGACTCGT 58.745 55.000 0.00 0.00 0.00 4.18
3601 7783 0.170561 CGTTCTGGGGTAGTGACTCG 59.829 60.000 0.00 0.00 0.00 4.18
3602 7784 1.201880 GTCGTTCTGGGGTAGTGACTC 59.798 57.143 0.00 0.00 0.00 3.36
3603 7785 1.203025 AGTCGTTCTGGGGTAGTGACT 60.203 52.381 0.00 0.00 33.16 3.41
3604 7786 1.201880 GAGTCGTTCTGGGGTAGTGAC 59.798 57.143 0.00 0.00 0.00 3.67
3605 7787 1.202964 TGAGTCGTTCTGGGGTAGTGA 60.203 52.381 0.00 0.00 0.00 3.41
3606 7788 1.254026 TGAGTCGTTCTGGGGTAGTG 58.746 55.000 0.00 0.00 0.00 2.74
3607 7789 2.100989 GATGAGTCGTTCTGGGGTAGT 58.899 52.381 0.00 0.00 0.00 2.73
3608 7790 1.065701 CGATGAGTCGTTCTGGGGTAG 59.934 57.143 0.00 0.00 42.78 3.18
3609 7791 1.100510 CGATGAGTCGTTCTGGGGTA 58.899 55.000 0.00 0.00 42.78 3.69
3610 7792 1.890894 CGATGAGTCGTTCTGGGGT 59.109 57.895 0.00 0.00 42.78 4.95
3611 7793 4.814900 CGATGAGTCGTTCTGGGG 57.185 61.111 0.00 0.00 42.78 4.96
3612 7794 4.682482 CGAGTCGATGAGTCGTTCTGGG 62.682 59.091 6.73 0.00 46.46 4.45
3613 7795 1.530031 CGAGTCGATGAGTCGTTCTGG 60.530 57.143 6.73 1.03 46.46 3.86
3614 7796 1.804062 CGAGTCGATGAGTCGTTCTG 58.196 55.000 6.73 0.00 46.46 3.02
3620 7802 3.576648 AGGTTTTTCGAGTCGATGAGTC 58.423 45.455 17.34 6.81 35.23 3.36
3621 7803 3.662247 AGGTTTTTCGAGTCGATGAGT 57.338 42.857 17.34 0.00 35.23 3.41
3622 7804 3.423645 GCAAGGTTTTTCGAGTCGATGAG 60.424 47.826 17.34 2.41 35.23 2.90
3623 7805 2.478894 GCAAGGTTTTTCGAGTCGATGA 59.521 45.455 17.34 5.52 35.23 2.92
3624 7806 2.412847 GGCAAGGTTTTTCGAGTCGATG 60.413 50.000 17.34 10.73 35.23 3.84
3625 7807 1.804748 GGCAAGGTTTTTCGAGTCGAT 59.195 47.619 17.34 0.00 35.23 3.59
3626 7808 1.202604 AGGCAAGGTTTTTCGAGTCGA 60.203 47.619 12.09 12.09 0.00 4.20
3627 7809 1.194772 GAGGCAAGGTTTTTCGAGTCG 59.805 52.381 6.09 6.09 0.00 4.18
3628 7810 1.194772 CGAGGCAAGGTTTTTCGAGTC 59.805 52.381 0.00 0.00 33.38 3.36
3629 7811 1.202604 TCGAGGCAAGGTTTTTCGAGT 60.203 47.619 0.00 0.00 35.60 4.18
3630 7812 1.508632 TCGAGGCAAGGTTTTTCGAG 58.491 50.000 0.00 0.00 35.60 4.04
3631 7813 2.073816 GATCGAGGCAAGGTTTTTCGA 58.926 47.619 0.00 0.00 43.38 3.71
3632 7814 2.076863 AGATCGAGGCAAGGTTTTTCG 58.923 47.619 0.00 0.00 0.00 3.46
3633 7815 4.229876 CAAAGATCGAGGCAAGGTTTTTC 58.770 43.478 0.00 0.00 0.00 2.29
3634 7816 3.636764 ACAAAGATCGAGGCAAGGTTTTT 59.363 39.130 0.00 0.00 0.00 1.94
3635 7817 3.222603 ACAAAGATCGAGGCAAGGTTTT 58.777 40.909 0.00 0.00 0.00 2.43
3636 7818 2.814336 GACAAAGATCGAGGCAAGGTTT 59.186 45.455 0.00 0.00 0.00 3.27
3637 7819 2.427506 GACAAAGATCGAGGCAAGGTT 58.572 47.619 0.00 0.00 0.00 3.50
3638 7820 1.339151 GGACAAAGATCGAGGCAAGGT 60.339 52.381 0.00 0.00 0.00 3.50
3639 7821 1.065854 AGGACAAAGATCGAGGCAAGG 60.066 52.381 0.00 0.00 0.00 3.61
3640 7822 2.393271 AGGACAAAGATCGAGGCAAG 57.607 50.000 0.00 0.00 0.00 4.01
3641 7823 2.699954 GAAGGACAAAGATCGAGGCAA 58.300 47.619 0.00 0.00 0.00 4.52
3642 7824 1.404181 CGAAGGACAAAGATCGAGGCA 60.404 52.381 0.00 0.00 37.48 4.75
3643 7825 1.281899 CGAAGGACAAAGATCGAGGC 58.718 55.000 0.00 0.00 37.48 4.70
3695 7877 6.462487 CCAATAGGACCTCAAGCGTAATTCTA 60.462 42.308 0.00 0.00 36.89 2.10
3704 7886 2.501723 TCTCACCAATAGGACCTCAAGC 59.498 50.000 0.00 0.00 38.69 4.01
3707 7889 4.170053 TCCTATCTCACCAATAGGACCTCA 59.830 45.833 0.00 0.00 46.31 3.86
3709 7891 4.834406 TCCTATCTCACCAATAGGACCT 57.166 45.455 7.61 0.00 46.31 3.85
3714 7896 4.999950 GGTTGCATCCTATCTCACCAATAG 59.000 45.833 6.56 0.00 0.00 1.73
3718 7900 2.481441 AGGTTGCATCCTATCTCACCA 58.519 47.619 14.90 0.00 35.87 4.17
3719 7901 4.141711 TGTTAGGTTGCATCCTATCTCACC 60.142 45.833 21.53 7.30 39.46 4.02
3720 7902 5.023533 TGTTAGGTTGCATCCTATCTCAC 57.976 43.478 21.53 16.93 39.46 3.51
3721 7903 5.130975 ACATGTTAGGTTGCATCCTATCTCA 59.869 40.000 21.53 19.35 39.46 3.27
3722 7904 5.615289 ACATGTTAGGTTGCATCCTATCTC 58.385 41.667 21.53 15.50 39.46 2.75
3749 7937 7.283127 CACAAGGCATAACAGATATGTTAGGTT 59.717 37.037 21.72 9.87 42.89 3.50
3750 7938 6.767902 CACAAGGCATAACAGATATGTTAGGT 59.232 38.462 21.72 4.83 42.89 3.08
3751 7939 6.293626 GCACAAGGCATAACAGATATGTTAGG 60.294 42.308 18.00 18.00 42.89 2.69
3752 7940 6.662616 GCACAAGGCATAACAGATATGTTAG 58.337 40.000 17.21 10.84 42.89 2.34
3753 7941 6.618287 GCACAAGGCATAACAGATATGTTA 57.382 37.500 14.86 14.86 42.89 2.41
3754 7942 5.505173 GCACAAGGCATAACAGATATGTT 57.495 39.130 11.02 11.02 42.89 2.71
3775 7963 5.938125 TCAAACCAAGGAAGTAGACATAAGC 59.062 40.000 0.00 0.00 0.00 3.09
3930 8118 2.287909 GGAGAGCTGCTGAGTATTACGG 60.288 54.545 7.01 0.00 0.00 4.02
4068 8290 8.045720 AGTAGGAGCCTCATTGGATTTTATTA 57.954 34.615 0.00 0.00 38.35 0.98
4100 8322 8.646900 TCATAATAGAGTACATATTGGTGTGCA 58.353 33.333 11.58 0.00 37.20 4.57
4156 8378 6.017400 ACTGATTAATGTTTTCTGGTGCAG 57.983 37.500 0.00 0.00 0.00 4.41
4246 8468 2.092538 TGGTTGGTTCAACTAAACCCGA 60.093 45.455 17.82 3.56 46.81 5.14
4250 8472 5.257082 ACATGTGGTTGGTTCAACTAAAC 57.743 39.130 0.00 0.00 43.14 2.01
4321 8543 5.760253 ACATTTAACTCTATTCCATCGCCAG 59.240 40.000 0.00 0.00 0.00 4.85
4357 8579 2.739913 TGCAGTCATGTTACGCTAAACC 59.260 45.455 0.00 0.00 0.00 3.27
4433 8655 3.119531 TCACATCAAAATCCAATGCCGTC 60.120 43.478 0.00 0.00 0.00 4.79
4502 10676 6.377406 CGAAGGATATTATTAGTGTCACGC 57.623 41.667 0.00 0.00 0.00 5.34
4545 10721 3.529734 AGGAGAGAGAATGGTAGACTGGA 59.470 47.826 0.00 0.00 0.00 3.86
4572 10750 2.981921 TGCATCCCTCCAGTCTATCAT 58.018 47.619 0.00 0.00 0.00 2.45
4596 10774 2.681152 AAATCTTCAACCGTTCACGC 57.319 45.000 0.00 0.00 38.18 5.34
4598 10776 4.514066 AGGTGTAAATCTTCAACCGTTCAC 59.486 41.667 0.00 0.00 0.00 3.18
4769 11158 6.214412 ACTGTCCAAGATATTCCTATGGATCC 59.786 42.308 4.20 4.20 41.83 3.36
4776 11165 6.611642 ACAAGCTACTGTCCAAGATATTCCTA 59.388 38.462 0.00 0.00 0.00 2.94
4840 11234 9.880157 AGAAATTGGAAAATAAACATCAGGATG 57.120 29.630 7.70 7.70 44.15 3.51
4869 11263 2.248248 ACCTGTCCGAGAATTCTGACA 58.752 47.619 21.14 21.14 42.80 3.58
4934 11333 1.072806 AGGACACTGAATGCTGCTTGA 59.927 47.619 0.00 0.00 0.00 3.02
5207 11611 7.040755 CCGGCAACCATGTATATATGAAAAAGA 60.041 37.037 10.79 0.00 0.00 2.52
5214 11618 6.374053 TCAAATCCGGCAACCATGTATATATG 59.626 38.462 0.00 2.59 0.00 1.78
5443 11847 9.964354 TTAAGATCCTCAATCTGAAATTCTGAA 57.036 29.630 6.66 0.00 44.26 3.02
5444 11848 9.610705 CTTAAGATCCTCAATCTGAAATTCTGA 57.389 33.333 5.07 5.07 44.26 3.27
5445 11849 8.838365 CCTTAAGATCCTCAATCTGAAATTCTG 58.162 37.037 3.36 0.00 44.26 3.02
5446 11850 8.776119 TCCTTAAGATCCTCAATCTGAAATTCT 58.224 33.333 3.36 0.00 44.26 2.40
5447 11851 8.970859 TCCTTAAGATCCTCAATCTGAAATTC 57.029 34.615 3.36 0.00 44.26 2.17
5448 11852 8.776119 TCTCCTTAAGATCCTCAATCTGAAATT 58.224 33.333 3.36 0.00 44.26 1.82
5449 11853 8.329346 TCTCCTTAAGATCCTCAATCTGAAAT 57.671 34.615 3.36 0.00 44.26 2.17
5450 11854 7.621285 TCTCTCCTTAAGATCCTCAATCTGAAA 59.379 37.037 3.36 0.00 44.26 2.69
5474 11878 7.716998 CAGCTATAAGACCAACCATTAACATCT 59.283 37.037 0.00 0.00 0.00 2.90
5517 11921 4.156477 AGGGCAAAATAGCAAGTTACCAA 58.844 39.130 0.00 0.00 35.83 3.67
5523 11927 2.888212 TGGAAGGGCAAAATAGCAAGT 58.112 42.857 0.00 0.00 35.83 3.16
5557 11961 1.202734 CCACAGCTGAGGATGTATGGG 60.203 57.143 24.40 3.80 40.34 4.00
5739 12231 1.795170 GCATTGGCAACGTGTGGTCT 61.795 55.000 0.00 0.00 40.72 3.85
5796 12288 5.904362 ACACCAGCTCTCAAAATTTATCC 57.096 39.130 0.00 0.00 0.00 2.59
5835 12327 6.920758 TCCAACAAACTTGTACAATATGCAAC 59.079 34.615 9.13 0.00 41.31 4.17
5987 12486 6.174760 ACAGTTCACCACTTACAGTAAAACA 58.825 36.000 6.22 0.00 30.92 2.83
5996 12495 4.035208 CCAAACTGACAGTTCACCACTTAC 59.965 45.833 20.81 0.00 37.47 2.34
5998 12497 3.016736 CCAAACTGACAGTTCACCACTT 58.983 45.455 20.81 0.96 37.47 3.16
6002 12501 1.597663 CGTCCAAACTGACAGTTCACC 59.402 52.381 20.81 8.77 37.47 4.02
6003 12502 1.597663 CCGTCCAAACTGACAGTTCAC 59.402 52.381 20.81 15.62 37.47 3.18
6004 12503 1.208535 ACCGTCCAAACTGACAGTTCA 59.791 47.619 20.81 5.96 37.47 3.18
6005 12504 1.949465 ACCGTCCAAACTGACAGTTC 58.051 50.000 20.81 7.86 37.47 3.01
6045 12555 2.339556 GCGCAAATACACCAGGCCA 61.340 57.895 5.01 0.00 0.00 5.36
6046 12556 2.489751 GCGCAAATACACCAGGCC 59.510 61.111 0.30 0.00 0.00 5.19
6047 12557 2.046285 AGGCGCAAATACACCAGGC 61.046 57.895 10.83 0.00 0.00 4.85
6048 12558 0.960364 ACAGGCGCAAATACACCAGG 60.960 55.000 10.83 0.00 0.00 4.45
6049 12559 0.881118 AACAGGCGCAAATACACCAG 59.119 50.000 10.83 0.00 0.00 4.00
6050 12560 1.323412 AAACAGGCGCAAATACACCA 58.677 45.000 10.83 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.