Multiple sequence alignment - TraesCS4B01G217800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G217800 chr4B 100.000 4749 0 0 1 4749 459926093 459921345 0.000000e+00 8770.0
1 TraesCS4B01G217800 chr4D 92.676 4069 175 39 715 4712 373812695 373808679 0.000000e+00 5749.0
2 TraesCS4B01G217800 chr4D 83.537 328 17 12 343 651 373813025 373812716 6.060000e-69 272.0
3 TraesCS4B01G217800 chr4D 86.538 208 16 4 74 281 373828597 373828402 8.000000e-53 219.0
4 TraesCS4B01G217800 chr4A 90.572 3235 192 48 597 3793 90785906 90789065 0.000000e+00 4180.0
5 TraesCS4B01G217800 chr4A 85.939 889 44 36 3832 4644 90789066 90789949 0.000000e+00 874.0
6 TraesCS4B01G217800 chr4A 85.034 147 8 5 177 311 90780307 90780451 2.300000e-28 137.0
7 TraesCS4B01G217800 chr4A 88.679 106 4 4 497 599 90780483 90780583 6.450000e-24 122.0
8 TraesCS4B01G217800 chr2D 82.822 163 23 4 1289 1446 93589073 93589235 1.780000e-29 141.0
9 TraesCS4B01G217800 chr5A 97.619 42 1 0 4708 4749 401303057 401303098 6.590000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G217800 chr4B 459921345 459926093 4748 True 8770.0 8770 100.0000 1 4749 1 chr4B.!!$R1 4748
1 TraesCS4B01G217800 chr4D 373808679 373813025 4346 True 3010.5 5749 88.1065 343 4712 2 chr4D.!!$R2 4369
2 TraesCS4B01G217800 chr4A 90785906 90789949 4043 False 2527.0 4180 88.2555 597 4644 2 chr4A.!!$F2 4047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 338 0.036164 TAAATGAGGGCGTGCTGTGT 59.964 50.0 0.00 0.00 0.00 3.72 F
417 418 0.106719 TCCAGGGGATGCGGAATTTC 60.107 55.0 0.00 0.00 0.00 2.17 F
1491 1553 0.028902 TCGAGGATGATACACACGCG 59.971 55.0 3.53 3.53 0.00 6.01 F
1511 1573 0.032017 AGGGAAGATCCTGCCGTACT 60.032 55.0 0.00 0.00 36.57 2.73 F
2851 2924 0.033228 GGATGATGGAGGAGCAGTCG 59.967 60.0 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1473 1535 0.028902 TCGCGTGTGTATCATCCTCG 59.971 55.000 5.77 0.00 0.00 4.63 R
1494 1556 0.030908 CGAGTACGGCAGGATCTTCC 59.969 60.000 0.00 0.00 34.53 3.46 R
3453 3529 0.179111 TGATGGACGATCGCAGTTCC 60.179 55.000 16.60 15.04 33.17 3.62 R
3484 3560 1.466950 GCCGGTTTCGTCAAATCATCA 59.533 47.619 1.90 0.00 33.95 3.07 R
4100 4187 0.033796 ATGATTCCTGCCACCACCAG 60.034 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.512974 CGGTGGGGGCGTATGAAC 60.513 66.667 0.00 0.00 0.00 3.18
18 19 2.672295 GGTGGGGGCGTATGAACA 59.328 61.111 0.00 0.00 0.00 3.18
19 20 1.226262 GGTGGGGGCGTATGAACAT 59.774 57.895 0.00 0.00 0.00 2.71
20 21 0.470766 GGTGGGGGCGTATGAACATA 59.529 55.000 0.00 0.00 0.00 2.29
21 22 1.073284 GGTGGGGGCGTATGAACATAT 59.927 52.381 0.00 0.00 0.00 1.78
22 23 2.303600 GGTGGGGGCGTATGAACATATA 59.696 50.000 0.00 0.00 0.00 0.86
23 24 3.054655 GGTGGGGGCGTATGAACATATAT 60.055 47.826 0.00 0.00 0.00 0.86
24 25 4.189231 GTGGGGGCGTATGAACATATATC 58.811 47.826 0.00 0.00 0.00 1.63
25 26 3.841255 TGGGGGCGTATGAACATATATCA 59.159 43.478 0.00 0.00 0.00 2.15
26 27 4.473196 TGGGGGCGTATGAACATATATCAT 59.527 41.667 7.95 7.95 40.49 2.45
27 28 5.045213 TGGGGGCGTATGAACATATATCATT 60.045 40.000 8.11 0.00 38.44 2.57
28 29 5.885912 GGGGGCGTATGAACATATATCATTT 59.114 40.000 8.11 0.00 38.44 2.32
29 30 6.377146 GGGGGCGTATGAACATATATCATTTT 59.623 38.462 8.11 0.00 38.44 1.82
30 31 7.093945 GGGGGCGTATGAACATATATCATTTTT 60.094 37.037 8.11 0.00 38.44 1.94
58 59 8.497910 AGAATAATATGACCATATATCGGGCT 57.502 34.615 3.22 0.00 33.86 5.19
59 60 8.370940 AGAATAATATGACCATATATCGGGCTG 58.629 37.037 3.22 0.00 33.86 4.85
60 61 5.957771 AATATGACCATATATCGGGCTGT 57.042 39.130 3.22 1.79 33.86 4.40
61 62 3.616956 ATGACCATATATCGGGCTGTG 57.383 47.619 8.09 0.00 30.26 3.66
62 63 1.001974 TGACCATATATCGGGCTGTGC 59.998 52.381 8.09 0.00 30.26 4.57
63 64 1.276421 GACCATATATCGGGCTGTGCT 59.724 52.381 0.00 0.00 0.00 4.40
64 65 1.002430 ACCATATATCGGGCTGTGCTG 59.998 52.381 0.00 0.00 0.00 4.41
65 66 1.676916 CCATATATCGGGCTGTGCTGG 60.677 57.143 0.00 0.00 0.00 4.85
66 67 0.615331 ATATATCGGGCTGTGCTGGG 59.385 55.000 0.00 0.00 0.00 4.45
67 68 2.111999 TATATCGGGCTGTGCTGGGC 62.112 60.000 0.00 0.00 0.00 5.36
93 94 3.961729 GGACGAACCGAAGTTGGG 58.038 61.111 1.78 1.78 36.13 4.12
94 95 1.368579 GGACGAACCGAAGTTGGGA 59.631 57.895 11.34 0.00 36.13 4.37
95 96 0.669625 GGACGAACCGAAGTTGGGAG 60.670 60.000 11.34 4.35 36.13 4.30
96 97 0.669625 GACGAACCGAAGTTGGGAGG 60.670 60.000 11.34 1.93 36.13 4.30
97 98 1.117142 ACGAACCGAAGTTGGGAGGA 61.117 55.000 11.34 0.00 36.13 3.71
98 99 0.389948 CGAACCGAAGTTGGGAGGAG 60.390 60.000 11.34 0.00 35.94 3.69
99 100 0.036294 GAACCGAAGTTGGGAGGAGG 60.036 60.000 11.34 0.00 35.94 4.30
100 101 0.767060 AACCGAAGTTGGGAGGAGGT 60.767 55.000 11.34 0.00 33.97 3.85
101 102 1.296715 CCGAAGTTGGGAGGAGGTG 59.703 63.158 0.00 0.00 0.00 4.00
102 103 1.192146 CCGAAGTTGGGAGGAGGTGA 61.192 60.000 0.00 0.00 0.00 4.02
103 104 0.247736 CGAAGTTGGGAGGAGGTGAG 59.752 60.000 0.00 0.00 0.00 3.51
104 105 0.615850 GAAGTTGGGAGGAGGTGAGG 59.384 60.000 0.00 0.00 0.00 3.86
105 106 0.104409 AAGTTGGGAGGAGGTGAGGT 60.104 55.000 0.00 0.00 0.00 3.85
106 107 0.838122 AGTTGGGAGGAGGTGAGGTG 60.838 60.000 0.00 0.00 0.00 4.00
107 108 1.128188 GTTGGGAGGAGGTGAGGTGT 61.128 60.000 0.00 0.00 0.00 4.16
108 109 1.127567 TTGGGAGGAGGTGAGGTGTG 61.128 60.000 0.00 0.00 0.00 3.82
109 110 2.294078 GGGAGGAGGTGAGGTGTGG 61.294 68.421 0.00 0.00 0.00 4.17
110 111 1.229209 GGAGGAGGTGAGGTGTGGA 60.229 63.158 0.00 0.00 0.00 4.02
111 112 0.836400 GGAGGAGGTGAGGTGTGGAA 60.836 60.000 0.00 0.00 0.00 3.53
112 113 0.321996 GAGGAGGTGAGGTGTGGAAC 59.678 60.000 0.00 0.00 37.35 3.62
123 124 3.047877 GTGGAACAAGACGCCCCG 61.048 66.667 0.00 0.00 44.16 5.73
124 125 4.323477 TGGAACAAGACGCCCCGG 62.323 66.667 0.00 0.00 31.92 5.73
126 127 4.011517 GAACAAGACGCCCCGGGA 62.012 66.667 26.32 0.00 0.00 5.14
127 128 3.325201 GAACAAGACGCCCCGGGAT 62.325 63.158 26.32 6.86 0.00 3.85
128 129 3.622060 AACAAGACGCCCCGGGATG 62.622 63.158 26.32 16.89 0.00 3.51
129 130 3.781307 CAAGACGCCCCGGGATGA 61.781 66.667 26.32 0.00 0.00 2.92
130 131 3.006728 AAGACGCCCCGGGATGAA 61.007 61.111 26.32 0.00 0.00 2.57
131 132 2.598787 AAGACGCCCCGGGATGAAA 61.599 57.895 26.32 0.00 0.00 2.69
132 133 2.513897 GACGCCCCGGGATGAAAG 60.514 66.667 26.32 4.58 0.00 2.62
133 134 4.109675 ACGCCCCGGGATGAAAGG 62.110 66.667 26.32 3.67 0.00 3.11
135 136 4.440829 GCCCCGGGATGAAAGGCA 62.441 66.667 26.32 0.00 43.32 4.75
136 137 2.358619 CCCCGGGATGAAAGGCAA 59.641 61.111 26.32 0.00 0.00 4.52
137 138 1.304879 CCCCGGGATGAAAGGCAAA 60.305 57.895 26.32 0.00 0.00 3.68
138 139 1.322538 CCCCGGGATGAAAGGCAAAG 61.323 60.000 26.32 0.00 0.00 2.77
139 140 1.322538 CCCGGGATGAAAGGCAAAGG 61.323 60.000 18.48 0.00 0.00 3.11
140 141 1.322538 CCGGGATGAAAGGCAAAGGG 61.323 60.000 0.00 0.00 0.00 3.95
141 142 1.322538 CGGGATGAAAGGCAAAGGGG 61.323 60.000 0.00 0.00 0.00 4.79
142 143 0.977627 GGGATGAAAGGCAAAGGGGG 60.978 60.000 0.00 0.00 0.00 5.40
143 144 1.617018 GGATGAAAGGCAAAGGGGGC 61.617 60.000 0.00 0.00 0.00 5.80
144 145 0.615827 GATGAAAGGCAAAGGGGGCT 60.616 55.000 0.00 0.00 46.88 5.19
145 146 0.906282 ATGAAAGGCAAAGGGGGCTG 60.906 55.000 0.00 0.00 43.71 4.85
146 147 2.924635 AAAGGCAAAGGGGGCTGC 60.925 61.111 0.00 0.00 43.71 5.25
147 148 3.772420 AAAGGCAAAGGGGGCTGCA 62.772 57.895 0.50 0.00 43.71 4.41
148 149 3.551081 AAGGCAAAGGGGGCTGCAT 62.551 57.895 0.50 0.00 43.71 3.96
149 150 3.777910 GGCAAAGGGGGCTGCATG 61.778 66.667 0.50 0.00 40.46 4.06
150 151 4.462280 GCAAAGGGGGCTGCATGC 62.462 66.667 11.82 11.82 38.48 4.06
151 152 2.998480 CAAAGGGGGCTGCATGCA 60.998 61.111 21.29 21.29 45.15 3.96
152 153 2.682494 AAAGGGGGCTGCATGCAG 60.682 61.111 37.81 37.81 45.15 4.41
153 154 4.772231 AAGGGGGCTGCATGCAGG 62.772 66.667 40.59 25.91 45.15 4.85
157 158 4.783621 GGGCTGCATGCAGGACGA 62.784 66.667 40.59 11.30 45.15 4.20
158 159 3.200593 GGCTGCATGCAGGACGAG 61.201 66.667 40.59 21.60 45.15 4.18
159 160 3.200593 GCTGCATGCAGGACGAGG 61.201 66.667 40.59 20.91 43.77 4.63
160 161 2.513204 CTGCATGCAGGACGAGGG 60.513 66.667 35.39 12.13 40.17 4.30
161 162 4.783621 TGCATGCAGGACGAGGGC 62.784 66.667 18.46 0.00 0.00 5.19
194 195 3.737172 GCGGCCGTGCAATCAACT 61.737 61.111 28.70 0.00 34.15 3.16
195 196 2.480555 CGGCCGTGCAATCAACTC 59.519 61.111 19.50 0.00 0.00 3.01
196 197 2.877691 GGCCGTGCAATCAACTCC 59.122 61.111 0.00 0.00 0.00 3.85
197 198 1.675641 GGCCGTGCAATCAACTCCT 60.676 57.895 0.00 0.00 0.00 3.69
198 199 1.244019 GGCCGTGCAATCAACTCCTT 61.244 55.000 0.00 0.00 0.00 3.36
199 200 0.169009 GCCGTGCAATCAACTCCTTC 59.831 55.000 0.00 0.00 0.00 3.46
200 201 0.804989 CCGTGCAATCAACTCCTTCC 59.195 55.000 0.00 0.00 0.00 3.46
201 202 0.804989 CGTGCAATCAACTCCTTCCC 59.195 55.000 0.00 0.00 0.00 3.97
202 203 1.881925 CGTGCAATCAACTCCTTCCCA 60.882 52.381 0.00 0.00 0.00 4.37
203 204 1.541588 GTGCAATCAACTCCTTCCCAC 59.458 52.381 0.00 0.00 0.00 4.61
204 205 1.425066 TGCAATCAACTCCTTCCCACT 59.575 47.619 0.00 0.00 0.00 4.00
205 206 2.087646 GCAATCAACTCCTTCCCACTC 58.912 52.381 0.00 0.00 0.00 3.51
206 207 2.716217 CAATCAACTCCTTCCCACTCC 58.284 52.381 0.00 0.00 0.00 3.85
207 208 1.290134 ATCAACTCCTTCCCACTCCC 58.710 55.000 0.00 0.00 0.00 4.30
208 209 0.104672 TCAACTCCTTCCCACTCCCA 60.105 55.000 0.00 0.00 0.00 4.37
209 210 0.036875 CAACTCCTTCCCACTCCCAC 59.963 60.000 0.00 0.00 0.00 4.61
210 211 1.134438 AACTCCTTCCCACTCCCACC 61.134 60.000 0.00 0.00 0.00 4.61
211 212 2.204090 TCCTTCCCACTCCCACCC 60.204 66.667 0.00 0.00 0.00 4.61
212 213 3.339093 CCTTCCCACTCCCACCCC 61.339 72.222 0.00 0.00 0.00 4.95
213 214 3.717294 CTTCCCACTCCCACCCCG 61.717 72.222 0.00 0.00 0.00 5.73
224 225 3.093835 CACCCCGCTCCCCCATAA 61.094 66.667 0.00 0.00 0.00 1.90
225 226 3.094498 ACCCCGCTCCCCCATAAC 61.094 66.667 0.00 0.00 0.00 1.89
226 227 4.250305 CCCCGCTCCCCCATAACG 62.250 72.222 0.00 0.00 0.00 3.18
227 228 4.250305 CCCGCTCCCCCATAACGG 62.250 72.222 0.00 0.00 43.44 4.44
228 229 3.476419 CCGCTCCCCCATAACGGT 61.476 66.667 0.00 0.00 39.05 4.83
229 230 2.135581 CCGCTCCCCCATAACGGTA 61.136 63.158 0.00 0.00 39.05 4.02
230 231 1.068585 CGCTCCCCCATAACGGTAC 59.931 63.158 0.00 0.00 0.00 3.34
231 232 1.448924 GCTCCCCCATAACGGTACC 59.551 63.158 0.16 0.16 0.00 3.34
232 233 1.744014 CTCCCCCATAACGGTACCG 59.256 63.158 32.22 32.22 46.03 4.02
233 234 2.109593 CCCCCATAACGGTACCGC 59.890 66.667 33.62 0.00 44.19 5.68
234 235 2.109593 CCCCATAACGGTACCGCC 59.890 66.667 33.62 0.00 44.19 6.13
235 236 2.437396 CCCCATAACGGTACCGCCT 61.437 63.158 33.62 22.82 44.19 5.52
236 237 1.068585 CCCATAACGGTACCGCCTC 59.931 63.158 33.62 0.00 44.19 4.70
237 238 1.068585 CCATAACGGTACCGCCTCC 59.931 63.158 33.62 0.00 44.19 4.30
244 245 3.902086 GTACCGCCTCCGCTCCTC 61.902 72.222 0.00 0.00 0.00 3.71
249 250 3.453679 GCCTCCGCTCCTCGTCTT 61.454 66.667 0.00 0.00 36.19 3.01
250 251 2.802106 CCTCCGCTCCTCGTCTTC 59.198 66.667 0.00 0.00 36.19 2.87
251 252 1.751162 CCTCCGCTCCTCGTCTTCT 60.751 63.158 0.00 0.00 36.19 2.85
252 253 1.720694 CCTCCGCTCCTCGTCTTCTC 61.721 65.000 0.00 0.00 36.19 2.87
253 254 2.042520 CTCCGCTCCTCGTCTTCTCG 62.043 65.000 0.00 0.00 36.19 4.04
254 255 2.277628 CGCTCCTCGTCTTCTCGC 60.278 66.667 0.00 0.00 0.00 5.03
255 256 2.277628 GCTCCTCGTCTTCTCGCG 60.278 66.667 0.00 0.00 0.00 5.87
256 257 2.277628 CTCCTCGTCTTCTCGCGC 60.278 66.667 0.00 0.00 0.00 6.86
257 258 2.746671 TCCTCGTCTTCTCGCGCT 60.747 61.111 5.56 0.00 0.00 5.92
258 259 2.277628 CCTCGTCTTCTCGCGCTC 60.278 66.667 5.56 0.00 0.00 5.03
259 260 2.277628 CTCGTCTTCTCGCGCTCC 60.278 66.667 5.56 0.00 0.00 4.70
260 261 3.743091 CTCGTCTTCTCGCGCTCCC 62.743 68.421 5.56 0.00 0.00 4.30
262 263 4.117661 GTCTTCTCGCGCTCCCGT 62.118 66.667 5.56 0.00 36.67 5.28
263 264 3.812019 TCTTCTCGCGCTCCCGTC 61.812 66.667 5.56 0.00 36.67 4.79
264 265 4.856607 CTTCTCGCGCTCCCGTCC 62.857 72.222 5.56 0.00 36.67 4.79
279 280 3.885814 TCCCCGATGGATAGTGCC 58.114 61.111 0.00 0.00 38.61 5.01
280 281 1.074850 TCCCCGATGGATAGTGCCA 60.075 57.895 0.00 0.00 43.23 4.92
288 289 3.165087 ATGGATAGTGCCATGGATTGG 57.835 47.619 18.40 0.00 46.62 3.16
300 301 3.777478 CATGGATTGGAGCATGTCAAAC 58.223 45.455 0.00 0.00 0.00 2.93
301 302 3.159213 TGGATTGGAGCATGTCAAACT 57.841 42.857 0.00 0.00 0.00 2.66
302 303 3.499338 TGGATTGGAGCATGTCAAACTT 58.501 40.909 0.00 0.00 0.00 2.66
303 304 3.256383 TGGATTGGAGCATGTCAAACTTG 59.744 43.478 0.00 0.00 0.00 3.16
304 305 3.507233 GGATTGGAGCATGTCAAACTTGA 59.493 43.478 0.00 0.00 34.20 3.02
305 306 4.022068 GGATTGGAGCATGTCAAACTTGAA 60.022 41.667 0.00 0.00 39.21 2.69
306 307 4.998671 TTGGAGCATGTCAAACTTGAAA 57.001 36.364 0.00 0.00 39.21 2.69
307 308 4.572985 TGGAGCATGTCAAACTTGAAAG 57.427 40.909 0.00 0.00 39.21 2.62
308 309 3.243501 TGGAGCATGTCAAACTTGAAAGC 60.244 43.478 0.00 0.00 39.21 3.51
309 310 3.311966 GAGCATGTCAAACTTGAAAGCC 58.688 45.455 0.00 0.00 39.21 4.35
310 311 2.961062 AGCATGTCAAACTTGAAAGCCT 59.039 40.909 0.00 0.00 39.21 4.58
311 312 3.054878 GCATGTCAAACTTGAAAGCCTG 58.945 45.455 0.00 0.00 39.21 4.85
312 313 3.645884 CATGTCAAACTTGAAAGCCTGG 58.354 45.455 0.00 0.00 39.21 4.45
313 314 2.031120 TGTCAAACTTGAAAGCCTGGG 58.969 47.619 0.00 0.00 39.21 4.45
314 315 1.341209 GTCAAACTTGAAAGCCTGGGG 59.659 52.381 0.00 0.00 39.21 4.96
315 316 2.370040 TCAAACTTGAAAGCCTGGGGC 61.370 52.381 0.00 0.00 40.95 5.80
324 325 2.274104 GCCTGGGGCCGTAAATGA 59.726 61.111 0.00 0.00 44.06 2.57
325 326 1.823899 GCCTGGGGCCGTAAATGAG 60.824 63.158 0.00 0.00 44.06 2.90
326 327 1.152963 CCTGGGGCCGTAAATGAGG 60.153 63.158 0.00 0.00 0.00 3.86
327 328 1.152963 CTGGGGCCGTAAATGAGGG 60.153 63.158 0.00 0.00 36.06 4.30
332 333 3.098555 CCGTAAATGAGGGCGTGC 58.901 61.111 0.00 0.00 0.00 5.34
333 334 1.449601 CCGTAAATGAGGGCGTGCT 60.450 57.895 0.00 0.00 0.00 4.40
334 335 1.705337 CCGTAAATGAGGGCGTGCTG 61.705 60.000 0.00 0.00 0.00 4.41
335 336 1.019278 CGTAAATGAGGGCGTGCTGT 61.019 55.000 0.00 0.00 0.00 4.40
336 337 0.447801 GTAAATGAGGGCGTGCTGTG 59.552 55.000 0.00 0.00 0.00 3.66
337 338 0.036164 TAAATGAGGGCGTGCTGTGT 59.964 50.000 0.00 0.00 0.00 3.72
338 339 0.823356 AAATGAGGGCGTGCTGTGTT 60.823 50.000 0.00 0.00 0.00 3.32
339 340 1.237285 AATGAGGGCGTGCTGTGTTC 61.237 55.000 0.00 0.00 0.00 3.18
340 341 2.280797 GAGGGCGTGCTGTGTTCA 60.281 61.111 0.00 0.00 0.00 3.18
341 342 1.672356 GAGGGCGTGCTGTGTTCAT 60.672 57.895 0.00 0.00 0.00 2.57
342 343 1.915614 GAGGGCGTGCTGTGTTCATG 61.916 60.000 0.00 0.00 0.00 3.07
343 344 2.562912 GGCGTGCTGTGTTCATGG 59.437 61.111 0.00 0.00 0.00 3.66
344 345 1.965930 GGCGTGCTGTGTTCATGGA 60.966 57.895 0.00 0.00 0.00 3.41
345 346 1.499056 GCGTGCTGTGTTCATGGAG 59.501 57.895 0.00 0.00 0.00 3.86
361 362 1.768870 TGGAGCCTAGCTGGTTTATCC 59.231 52.381 0.00 0.00 39.88 2.59
386 387 2.786495 CGCTGCCTCCATCTACGGT 61.786 63.158 0.00 0.00 0.00 4.83
387 388 1.452953 CGCTGCCTCCATCTACGGTA 61.453 60.000 0.00 0.00 0.00 4.02
388 389 0.969894 GCTGCCTCCATCTACGGTAT 59.030 55.000 0.00 0.00 0.00 2.73
389 390 2.168496 GCTGCCTCCATCTACGGTATA 58.832 52.381 0.00 0.00 0.00 1.47
407 408 4.971924 GGTATATAGATGCTTCCAGGGGAT 59.028 45.833 0.00 0.00 0.00 3.85
414 415 1.533711 CTTCCAGGGGATGCGGAAT 59.466 57.895 0.00 0.00 38.13 3.01
417 418 0.106719 TCCAGGGGATGCGGAATTTC 60.107 55.000 0.00 0.00 0.00 2.17
429 430 2.097541 GCGGAATTTCTACGCGATACAC 60.098 50.000 15.93 0.00 43.98 2.90
450 451 2.412770 CCATGCCGAAATGTTTGAAAGC 59.587 45.455 0.00 0.00 0.00 3.51
475 480 7.814587 GCAGTAAAAGCCATTTTAATTCTCTGT 59.185 33.333 0.00 0.00 41.36 3.41
480 485 8.962884 AAAGCCATTTTAATTCTCTGTTTTGT 57.037 26.923 0.00 0.00 0.00 2.83
482 487 9.696917 AAGCCATTTTAATTCTCTGTTTTGTAG 57.303 29.630 0.00 0.00 0.00 2.74
507 512 0.250338 GGAGGGCTTGAAACTGACGT 60.250 55.000 0.00 0.00 0.00 4.34
553 567 2.048690 GAGCGAGGCCGATCCATC 60.049 66.667 0.00 0.00 44.59 3.51
554 568 3.581687 GAGCGAGGCCGATCCATCC 62.582 68.421 0.00 0.00 44.59 3.51
561 575 4.664677 CCGATCCATCCGCCGGAC 62.665 72.222 8.62 0.00 44.29 4.79
563 577 4.664677 GATCCATCCGCCGGACCG 62.665 72.222 8.62 6.99 34.69 4.79
664 683 2.063266 CACGTACGTACACATTGGCTT 58.937 47.619 22.34 0.00 0.00 4.35
666 685 1.392168 CGTACGTACACATTGGCTTGG 59.608 52.381 24.50 0.81 0.00 3.61
667 686 1.129811 GTACGTACACATTGGCTTGGC 59.870 52.381 20.67 0.00 0.00 4.52
706 725 3.459145 GAGCCGGAAGAATTCTAACCTC 58.541 50.000 21.39 11.51 46.56 3.85
707 726 2.159085 AGCCGGAAGAATTCTAACCTCG 60.159 50.000 21.39 14.87 46.56 4.63
708 727 2.202566 CCGGAAGAATTCTAACCTCGC 58.797 52.381 21.39 6.65 46.56 5.03
709 728 2.202566 CGGAAGAATTCTAACCTCGCC 58.797 52.381 21.39 10.02 46.56 5.54
710 729 2.562635 GGAAGAATTCTAACCTCGCCC 58.437 52.381 8.75 0.00 46.56 6.13
711 730 2.202566 GAAGAATTCTAACCTCGCCCG 58.797 52.381 8.75 0.00 43.23 6.13
712 731 1.192428 AGAATTCTAACCTCGCCCGT 58.808 50.000 6.06 0.00 0.00 5.28
713 732 1.136500 AGAATTCTAACCTCGCCCGTC 59.864 52.381 6.06 0.00 0.00 4.79
714 733 0.177373 AATTCTAACCTCGCCCGTCC 59.823 55.000 0.00 0.00 0.00 4.79
715 734 2.012902 ATTCTAACCTCGCCCGTCCG 62.013 60.000 0.00 0.00 0.00 4.79
913 952 2.236766 TCTTTCTTTCCTCGGTCTCGT 58.763 47.619 0.00 0.00 37.69 4.18
930 969 2.042831 GTTTGGCAGGCAGCTCGAT 61.043 57.895 0.81 0.00 44.79 3.59
976 1038 2.423446 GCGGCAGTAGGGATCAGG 59.577 66.667 0.00 0.00 0.00 3.86
977 1039 2.423446 CGGCAGTAGGGATCAGGC 59.577 66.667 0.00 0.00 0.00 4.85
978 1040 2.832498 GGCAGTAGGGATCAGGCC 59.168 66.667 0.00 0.00 0.00 5.19
980 1042 3.142393 CAGTAGGGATCAGGCCGG 58.858 66.667 0.00 0.00 0.00 6.13
982 1044 0.469331 CAGTAGGGATCAGGCCGGTA 60.469 60.000 1.90 0.00 0.00 4.02
983 1045 0.178958 AGTAGGGATCAGGCCGGTAG 60.179 60.000 1.90 0.00 0.00 3.18
984 1046 1.533273 TAGGGATCAGGCCGGTAGC 60.533 63.158 1.90 0.00 42.60 3.58
1170 1232 2.501610 GCCTACTTCGGCCTCAGG 59.498 66.667 0.00 0.64 44.41 3.86
1385 1447 2.289945 GCTGCCTCTCTTCTTGGAAGAA 60.290 50.000 10.55 1.97 42.41 2.52
1401 1463 3.909364 GGAAGAAGGAGATGATGAGGGAT 59.091 47.826 0.00 0.00 0.00 3.85
1404 1466 2.113807 AGGAGATGATGAGGGATGCA 57.886 50.000 0.00 0.00 0.00 3.96
1407 1469 2.371179 GGAGATGATGAGGGATGCAGAA 59.629 50.000 0.00 0.00 0.00 3.02
1413 1475 1.956869 TGAGGGATGCAGAAGAGGAA 58.043 50.000 0.00 0.00 0.00 3.36
1446 1508 1.271001 TGCTCTTGCTGCAAAGCTCTA 60.271 47.619 30.52 18.74 40.48 2.43
1456 1518 4.269844 GCTGCAAAGCTCTAGTACAGATTC 59.730 45.833 0.00 0.00 31.13 2.52
1471 1533 1.352156 GATTCCTTCTTCACGCGCGT 61.352 55.000 32.73 32.73 0.00 6.01
1473 1535 1.554042 TTCCTTCTTCACGCGCGTTC 61.554 55.000 35.90 0.00 0.00 3.95
1480 1542 3.902063 CACGCGCGTTCGAGGATG 61.902 66.667 35.90 16.08 39.86 3.51
1481 1543 4.111016 ACGCGCGTTCGAGGATGA 62.111 61.111 32.73 0.00 39.86 2.92
1482 1544 2.655364 CGCGCGTTCGAGGATGAT 60.655 61.111 24.19 0.00 38.10 2.45
1483 1545 1.370051 CGCGCGTTCGAGGATGATA 60.370 57.895 24.19 0.00 38.10 2.15
1484 1546 1.597700 CGCGCGTTCGAGGATGATAC 61.598 60.000 24.19 0.00 38.10 2.24
1485 1547 0.594028 GCGCGTTCGAGGATGATACA 60.594 55.000 8.43 0.00 38.10 2.29
1486 1548 1.121240 CGCGTTCGAGGATGATACAC 58.879 55.000 0.00 0.00 38.10 2.90
1487 1549 1.533129 CGCGTTCGAGGATGATACACA 60.533 52.381 0.00 0.00 38.10 3.72
1488 1550 1.852895 GCGTTCGAGGATGATACACAC 59.147 52.381 0.00 0.00 0.00 3.82
1489 1551 2.109463 CGTTCGAGGATGATACACACG 58.891 52.381 0.00 0.00 0.00 4.49
1490 1552 1.852895 GTTCGAGGATGATACACACGC 59.147 52.381 0.00 0.00 0.00 5.34
1491 1553 0.028902 TCGAGGATGATACACACGCG 59.971 55.000 3.53 3.53 0.00 6.01
1492 1554 0.028902 CGAGGATGATACACACGCGA 59.971 55.000 15.93 0.00 0.00 5.87
1493 1555 1.759994 GAGGATGATACACACGCGAG 58.240 55.000 15.93 7.88 0.00 5.03
1494 1556 0.385751 AGGATGATACACACGCGAGG 59.614 55.000 15.93 7.12 0.00 4.63
1495 1557 0.597637 GGATGATACACACGCGAGGG 60.598 60.000 15.93 9.40 43.28 4.30
1496 1558 0.384309 GATGATACACACGCGAGGGA 59.616 55.000 15.93 0.00 38.45 4.20
1497 1559 0.821517 ATGATACACACGCGAGGGAA 59.178 50.000 15.93 0.00 38.45 3.97
1498 1560 0.172578 TGATACACACGCGAGGGAAG 59.827 55.000 15.93 0.00 38.45 3.46
1499 1561 0.454600 GATACACACGCGAGGGAAGA 59.545 55.000 15.93 0.00 38.45 2.87
1500 1562 1.067212 GATACACACGCGAGGGAAGAT 59.933 52.381 15.93 2.34 38.45 2.40
1506 1568 2.110006 GCGAGGGAAGATCCTGCC 59.890 66.667 0.00 0.00 37.25 4.85
1511 1573 0.032017 AGGGAAGATCCTGCCGTACT 60.032 55.000 0.00 0.00 36.57 2.73
1519 1581 0.035725 TCCTGCCGTACTCGAGAAGA 60.036 55.000 21.68 0.31 39.71 2.87
1542 1604 3.185391 CAGCCGAAGAAGAAGAACAAGAC 59.815 47.826 0.00 0.00 0.00 3.01
1592 1654 1.269998 CCACGAAGACGAAGAAGAGGT 59.730 52.381 0.00 0.00 42.66 3.85
1617 1679 2.162681 CAAAACGAAGAGGAAGCCCAT 58.837 47.619 0.00 0.00 33.88 4.00
1623 1685 0.255318 AAGAGGAAGCCCATGAGCAG 59.745 55.000 0.76 0.00 34.23 4.24
1635 1697 0.924823 ATGAGCAGCAAGGGGAGATT 59.075 50.000 0.00 0.00 0.00 2.40
1700 1762 2.490217 CGAAGAGATCACGCCCGT 59.510 61.111 0.00 0.00 0.00 5.28
1793 1855 0.470833 GATGCCCCTAGCTCTGAGGA 60.471 60.000 6.83 0.00 44.23 3.71
1797 1859 0.486879 CCCCTAGCTCTGAGGAGGAT 59.513 60.000 6.83 0.00 39.80 3.24
1809 1871 3.033909 TGAGGAGGATGACATGAATCGT 58.966 45.455 0.00 3.87 0.00 3.73
1856 1918 0.957395 CTTGATGCCGCAGTGGTTCT 60.957 55.000 0.89 0.00 41.21 3.01
1894 1956 1.503818 GGCTTCTTCGGTTGCAACGA 61.504 55.000 22.67 19.22 38.78 3.85
1895 1957 0.517316 GCTTCTTCGGTTGCAACGAT 59.483 50.000 22.67 0.00 40.38 3.73
1918 1980 1.938577 CTGCCATGACTGAGAATTCCG 59.061 52.381 0.65 0.00 0.00 4.30
1993 2055 4.161189 TCAGGACTGATGAAGGAGACATTC 59.839 45.833 0.00 0.00 34.14 2.67
2031 2093 8.204836 GGTAATAACCTCTCTATTTGCTTCTCA 58.795 37.037 0.00 0.00 43.08 3.27
2045 2107 2.747446 GCTTCTCAGCCCGTTCAATTTA 59.253 45.455 0.00 0.00 40.61 1.40
2167 2235 2.511600 GCGAGGTGTCAATCGGGG 60.512 66.667 9.91 0.00 39.31 5.73
2175 2243 1.451387 GTCAATCGGGGGCGACATT 60.451 57.895 0.00 0.00 0.00 2.71
2229 2297 0.394938 TTCAAGAACTGGTGGCGCTA 59.605 50.000 7.64 0.00 0.00 4.26
2283 2351 1.125093 ACCGGACATCACCACTGGAA 61.125 55.000 9.46 0.00 34.52 3.53
2340 2408 3.127548 GTGGTACAATCATTGCAGAGTGG 59.872 47.826 8.08 0.00 44.16 4.00
2641 2714 3.800863 TCGAGCGAGGTCGAGTGC 61.801 66.667 21.17 0.00 43.91 4.40
2851 2924 0.033228 GGATGATGGAGGAGCAGTCG 59.967 60.000 0.00 0.00 0.00 4.18
2884 2957 3.873883 GCGATGCAGCTGCTGACC 61.874 66.667 36.61 21.46 42.66 4.02
2932 3005 1.992277 GCAGGAGCTGGAGAGGGAA 60.992 63.158 0.00 0.00 37.91 3.97
2944 3017 0.472734 AGAGGGAACTGGAGCTGTGT 60.473 55.000 0.00 0.00 44.43 3.72
3016 3089 0.037697 TCAAGGACAATGCGCGTAGT 60.038 50.000 8.43 0.00 0.00 2.73
3028 3101 1.783434 GCGTAGTACCAACGGCAAC 59.217 57.895 17.16 0.73 40.64 4.17
3164 3237 0.807667 CAGGGCGGATCAAGAGAACG 60.808 60.000 0.00 0.00 0.00 3.95
3223 3296 0.337773 TGGAGATGGAGAGGCTGTCT 59.662 55.000 11.79 0.00 38.71 3.41
3329 3405 1.670811 GTTCCTCGGACGATTACGGTA 59.329 52.381 0.00 0.00 44.46 4.02
3337 3413 2.034305 GGACGATTACGGTATGTCAGCT 59.966 50.000 13.92 0.00 44.46 4.24
3340 3416 3.318275 ACGATTACGGTATGTCAGCTGAT 59.682 43.478 21.47 7.45 44.46 2.90
3346 3422 1.539065 GGTATGTCAGCTGATGGTCCG 60.539 57.143 21.47 0.00 0.00 4.79
3352 3428 0.745486 CAGCTGATGGTCCGCATTCA 60.745 55.000 8.42 0.00 0.00 2.57
3357 3433 3.697439 ATGGTCCGCATTCACCGGG 62.697 63.158 6.32 0.00 45.60 5.73
3427 3503 1.905215 TCCAGAGGAAAGAGCCTTCTG 59.095 52.381 0.00 0.00 38.73 3.02
3484 3560 0.835941 GTCCATCATCCACAGAGGCT 59.164 55.000 0.00 0.00 37.29 4.58
3492 3568 3.201487 TCATCCACAGAGGCTGATGATTT 59.799 43.478 9.64 0.00 37.60 2.17
3628 3704 1.310933 GGCACTGCATCAAGTCCCTG 61.311 60.000 2.82 0.00 0.00 4.45
3799 3875 7.633193 TTACATGTGGTAAGTTTGAGTTTGT 57.367 32.000 9.11 0.00 37.05 2.83
3800 3876 5.890334 ACATGTGGTAAGTTTGAGTTTGTG 58.110 37.500 0.00 0.00 0.00 3.33
3801 3877 5.417580 ACATGTGGTAAGTTTGAGTTTGTGT 59.582 36.000 0.00 0.00 0.00 3.72
3802 3878 5.968528 TGTGGTAAGTTTGAGTTTGTGTT 57.031 34.783 0.00 0.00 0.00 3.32
3803 3879 6.334102 TGTGGTAAGTTTGAGTTTGTGTTT 57.666 33.333 0.00 0.00 0.00 2.83
3821 3897 3.379880 TGCCCTTGCAGCCATTTC 58.620 55.556 0.00 0.00 44.23 2.17
3883 3959 4.455877 AGCTGAATTACTGTGGCTGTTTAC 59.544 41.667 0.00 0.00 0.00 2.01
3884 3960 4.379499 GCTGAATTACTGTGGCTGTTTACC 60.379 45.833 0.00 0.00 0.00 2.85
3885 3961 4.720046 TGAATTACTGTGGCTGTTTACCA 58.280 39.130 0.00 0.00 33.84 3.25
3886 3962 4.759693 TGAATTACTGTGGCTGTTTACCAG 59.240 41.667 0.00 0.00 44.53 4.00
3931 4014 5.801444 CGATTATTGTGCTTTGCAGATTCAA 59.199 36.000 0.00 0.00 40.08 2.69
4100 4187 1.360192 GCGGGCTTTATGATGTGGC 59.640 57.895 0.00 0.00 0.00 5.01
4189 4276 0.038892 GGCATGCACACCACTTCAAG 60.039 55.000 21.36 0.00 0.00 3.02
4190 4277 0.953727 GCATGCACACCACTTCAAGA 59.046 50.000 14.21 0.00 0.00 3.02
4191 4278 1.335324 GCATGCACACCACTTCAAGAC 60.335 52.381 14.21 0.00 0.00 3.01
4192 4279 1.069703 CATGCACACCACTTCAAGACG 60.070 52.381 0.00 0.00 0.00 4.18
4194 4281 0.582005 GCACACCACTTCAAGACGAC 59.418 55.000 0.00 0.00 0.00 4.34
4195 4282 1.934589 CACACCACTTCAAGACGACA 58.065 50.000 0.00 0.00 0.00 4.35
4196 4283 1.860950 CACACCACTTCAAGACGACAG 59.139 52.381 0.00 0.00 0.00 3.51
4197 4284 1.754803 ACACCACTTCAAGACGACAGA 59.245 47.619 0.00 0.00 0.00 3.41
4198 4285 2.365617 ACACCACTTCAAGACGACAGAT 59.634 45.455 0.00 0.00 0.00 2.90
4208 4312 4.878971 TCAAGACGACAGATAAGAGAGAGG 59.121 45.833 0.00 0.00 0.00 3.69
4218 4322 6.126215 ACAGATAAGAGAGAGGGAGAGAATCA 60.126 42.308 0.00 0.00 37.82 2.57
4240 4344 0.178915 AAAAGGGTAAAGGTGGCCCC 60.179 55.000 0.00 0.03 43.32 5.80
4269 4374 6.038356 CAGATGTGGTGGATTTTCTATTTGC 58.962 40.000 0.00 0.00 0.00 3.68
4271 4376 7.067372 CAGATGTGGTGGATTTTCTATTTGCTA 59.933 37.037 0.00 0.00 0.00 3.49
4298 4403 7.064609 CGCTTCTTTTTCCCTTTTCTTTCTTTT 59.935 33.333 0.00 0.00 0.00 2.27
4369 4505 2.365408 AGGCTTGTAGCTTGTACGTC 57.635 50.000 0.00 0.00 41.99 4.34
4460 4601 4.023279 TCCTGTTTCATTTGACATGGTTCG 60.023 41.667 0.00 0.00 0.00 3.95
4484 4627 3.582647 TGGTCCTTGATGCTTCTTCTGTA 59.417 43.478 0.88 0.00 0.00 2.74
4653 4804 3.850752 CCCTGGGAAGATAGAGAGCTAA 58.149 50.000 7.01 0.00 0.00 3.09
4654 4805 4.227197 CCCTGGGAAGATAGAGAGCTAAA 58.773 47.826 7.01 0.00 0.00 1.85
4662 4813 9.348476 GGGAAGATAGAGAGCTAAATTTCAAAT 57.652 33.333 0.00 0.00 0.00 2.32
4712 4863 4.640201 AGGAATTACAATCACGTCCAATGG 59.360 41.667 0.00 0.00 0.00 3.16
4713 4864 4.638421 GGAATTACAATCACGTCCAATGGA 59.362 41.667 0.00 0.00 0.00 3.41
4714 4865 5.220854 GGAATTACAATCACGTCCAATGGAG 60.221 44.000 0.27 0.00 29.39 3.86
4715 4866 2.113860 ACAATCACGTCCAATGGAGG 57.886 50.000 19.26 19.26 42.55 4.30
4716 4867 1.628340 ACAATCACGTCCAATGGAGGA 59.372 47.619 26.49 13.84 39.66 3.71
4717 4868 2.239654 ACAATCACGTCCAATGGAGGAT 59.760 45.455 26.49 15.38 39.66 3.24
4718 4869 3.454447 ACAATCACGTCCAATGGAGGATA 59.546 43.478 26.49 14.54 39.66 2.59
4719 4870 4.060900 CAATCACGTCCAATGGAGGATAG 58.939 47.826 26.49 15.67 39.66 2.08
4720 4871 3.026707 TCACGTCCAATGGAGGATAGA 57.973 47.619 26.49 17.42 39.66 1.98
4721 4872 2.959030 TCACGTCCAATGGAGGATAGAG 59.041 50.000 26.49 11.43 39.66 2.43
4722 4873 1.689273 ACGTCCAATGGAGGATAGAGC 59.311 52.381 26.49 0.62 39.66 4.09
4723 4874 1.001406 CGTCCAATGGAGGATAGAGCC 59.999 57.143 16.33 0.00 39.66 4.70
4724 4875 2.050144 GTCCAATGGAGGATAGAGCCA 58.950 52.381 0.27 0.00 40.42 4.75
4725 4876 2.050144 TCCAATGGAGGATAGAGCCAC 58.950 52.381 0.00 0.00 33.93 5.01
4726 4877 2.053244 CCAATGGAGGATAGAGCCACT 58.947 52.381 0.00 0.00 33.93 4.00
4727 4878 2.441001 CCAATGGAGGATAGAGCCACTT 59.559 50.000 0.00 0.00 33.93 3.16
4728 4879 3.474600 CAATGGAGGATAGAGCCACTTG 58.525 50.000 0.00 0.00 33.93 3.16
4729 4880 1.500474 TGGAGGATAGAGCCACTTGG 58.500 55.000 0.00 0.00 38.53 3.61
4730 4881 0.761802 GGAGGATAGAGCCACTTGGG 59.238 60.000 0.00 0.00 40.85 4.12
4739 4890 3.277133 CCACTTGGGCATGGAACG 58.723 61.111 0.00 0.00 38.34 3.95
4740 4891 1.303236 CCACTTGGGCATGGAACGA 60.303 57.895 0.00 0.00 38.34 3.85
4741 4892 1.308069 CCACTTGGGCATGGAACGAG 61.308 60.000 0.00 0.00 38.34 4.18
4742 4893 1.002134 ACTTGGGCATGGAACGAGG 60.002 57.895 0.00 0.00 0.00 4.63
4743 4894 1.002134 CTTGGGCATGGAACGAGGT 60.002 57.895 0.00 0.00 0.00 3.85
4744 4895 1.303236 TTGGGCATGGAACGAGGTG 60.303 57.895 0.00 0.00 0.00 4.00
4745 4896 2.438434 GGGCATGGAACGAGGTGG 60.438 66.667 0.00 0.00 0.00 4.61
4746 4897 2.438434 GGCATGGAACGAGGTGGG 60.438 66.667 0.00 0.00 0.00 4.61
4747 4898 2.668632 GCATGGAACGAGGTGGGA 59.331 61.111 0.00 0.00 0.00 4.37
4748 4899 1.450312 GCATGGAACGAGGTGGGAG 60.450 63.158 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.512974 GTTCATACGCCCCCACCG 60.513 66.667 0.00 0.00 0.00 4.94
2 3 2.561478 ATATGTTCATACGCCCCCAC 57.439 50.000 0.00 0.00 0.00 4.61
4 5 4.481368 TGATATATGTTCATACGCCCCC 57.519 45.455 0.00 0.00 0.00 5.40
5 6 7.391148 AAAATGATATATGTTCATACGCCCC 57.609 36.000 0.00 0.00 33.52 5.80
32 33 9.601810 AGCCCGATATATGGTCATATTATTCTA 57.398 33.333 8.54 0.00 35.71 2.10
33 34 8.370940 CAGCCCGATATATGGTCATATTATTCT 58.629 37.037 8.54 0.00 35.71 2.40
34 35 8.150945 ACAGCCCGATATATGGTCATATTATTC 58.849 37.037 8.54 4.36 35.71 1.75
35 36 7.933577 CACAGCCCGATATATGGTCATATTATT 59.066 37.037 8.54 0.00 35.71 1.40
36 37 7.445121 CACAGCCCGATATATGGTCATATTAT 58.555 38.462 8.54 2.17 35.71 1.28
37 38 6.685368 GCACAGCCCGATATATGGTCATATTA 60.685 42.308 8.54 0.00 35.71 0.98
38 39 5.674525 CACAGCCCGATATATGGTCATATT 58.325 41.667 8.54 0.00 35.71 1.28
39 40 4.443457 GCACAGCCCGATATATGGTCATAT 60.443 45.833 8.33 8.33 37.69 1.78
40 41 3.118775 GCACAGCCCGATATATGGTCATA 60.119 47.826 0.00 0.00 0.00 2.15
41 42 2.355108 GCACAGCCCGATATATGGTCAT 60.355 50.000 0.00 0.00 0.00 3.06
42 43 1.001974 GCACAGCCCGATATATGGTCA 59.998 52.381 0.00 0.00 0.00 4.02
43 44 1.276421 AGCACAGCCCGATATATGGTC 59.724 52.381 0.00 0.00 0.00 4.02
44 45 1.002430 CAGCACAGCCCGATATATGGT 59.998 52.381 0.00 0.00 0.00 3.55
45 46 1.676916 CCAGCACAGCCCGATATATGG 60.677 57.143 0.00 0.00 0.00 2.74
46 47 1.676916 CCCAGCACAGCCCGATATATG 60.677 57.143 0.00 0.00 0.00 1.78
47 48 0.615331 CCCAGCACAGCCCGATATAT 59.385 55.000 0.00 0.00 0.00 0.86
48 49 2.057830 CCCAGCACAGCCCGATATA 58.942 57.895 0.00 0.00 0.00 0.86
49 50 2.831770 CCCAGCACAGCCCGATAT 59.168 61.111 0.00 0.00 0.00 1.63
50 51 4.175337 GCCCAGCACAGCCCGATA 62.175 66.667 0.00 0.00 0.00 2.92
76 77 0.669625 CTCCCAACTTCGGTTCGTCC 60.670 60.000 0.00 0.00 35.78 4.79
77 78 0.669625 CCTCCCAACTTCGGTTCGTC 60.670 60.000 0.00 0.00 35.78 4.20
78 79 1.117142 TCCTCCCAACTTCGGTTCGT 61.117 55.000 0.00 0.00 35.78 3.85
79 80 0.389948 CTCCTCCCAACTTCGGTTCG 60.390 60.000 0.00 0.00 35.78 3.95
80 81 0.036294 CCTCCTCCCAACTTCGGTTC 60.036 60.000 0.00 0.00 35.78 3.62
81 82 0.767060 ACCTCCTCCCAACTTCGGTT 60.767 55.000 0.00 0.00 38.94 4.44
82 83 1.152096 ACCTCCTCCCAACTTCGGT 60.152 57.895 0.00 0.00 0.00 4.69
83 84 1.192146 TCACCTCCTCCCAACTTCGG 61.192 60.000 0.00 0.00 0.00 4.30
84 85 0.247736 CTCACCTCCTCCCAACTTCG 59.752 60.000 0.00 0.00 0.00 3.79
85 86 0.615850 CCTCACCTCCTCCCAACTTC 59.384 60.000 0.00 0.00 0.00 3.01
86 87 0.104409 ACCTCACCTCCTCCCAACTT 60.104 55.000 0.00 0.00 0.00 2.66
87 88 0.838122 CACCTCACCTCCTCCCAACT 60.838 60.000 0.00 0.00 0.00 3.16
88 89 1.128188 ACACCTCACCTCCTCCCAAC 61.128 60.000 0.00 0.00 0.00 3.77
89 90 1.127567 CACACCTCACCTCCTCCCAA 61.128 60.000 0.00 0.00 0.00 4.12
90 91 1.536418 CACACCTCACCTCCTCCCA 60.536 63.158 0.00 0.00 0.00 4.37
91 92 2.294078 CCACACCTCACCTCCTCCC 61.294 68.421 0.00 0.00 0.00 4.30
92 93 0.836400 TTCCACACCTCACCTCCTCC 60.836 60.000 0.00 0.00 0.00 4.30
93 94 0.321996 GTTCCACACCTCACCTCCTC 59.678 60.000 0.00 0.00 0.00 3.71
94 95 0.399949 TGTTCCACACCTCACCTCCT 60.400 55.000 0.00 0.00 0.00 3.69
95 96 0.472471 TTGTTCCACACCTCACCTCC 59.528 55.000 0.00 0.00 0.00 4.30
96 97 1.416401 TCTTGTTCCACACCTCACCTC 59.584 52.381 0.00 0.00 0.00 3.85
97 98 1.141053 GTCTTGTTCCACACCTCACCT 59.859 52.381 0.00 0.00 0.00 4.00
98 99 1.594331 GTCTTGTTCCACACCTCACC 58.406 55.000 0.00 0.00 0.00 4.02
99 100 1.217882 CGTCTTGTTCCACACCTCAC 58.782 55.000 0.00 0.00 0.00 3.51
100 101 0.531974 GCGTCTTGTTCCACACCTCA 60.532 55.000 0.00 0.00 0.00 3.86
101 102 1.228657 GGCGTCTTGTTCCACACCTC 61.229 60.000 0.00 0.00 0.00 3.85
102 103 1.227853 GGCGTCTTGTTCCACACCT 60.228 57.895 0.00 0.00 0.00 4.00
103 104 2.258726 GGGCGTCTTGTTCCACACC 61.259 63.158 0.00 0.00 0.00 4.16
104 105 2.258726 GGGGCGTCTTGTTCCACAC 61.259 63.158 0.00 0.00 0.00 3.82
105 106 2.112297 GGGGCGTCTTGTTCCACA 59.888 61.111 0.00 0.00 0.00 4.17
106 107 3.047877 CGGGGCGTCTTGTTCCAC 61.048 66.667 0.00 0.00 0.00 4.02
107 108 4.323477 CCGGGGCGTCTTGTTCCA 62.323 66.667 0.00 0.00 0.00 3.53
109 110 3.325201 ATCCCGGGGCGTCTTGTTC 62.325 63.158 23.50 0.00 0.00 3.18
110 111 3.327404 ATCCCGGGGCGTCTTGTT 61.327 61.111 23.50 0.00 0.00 2.83
111 112 4.096003 CATCCCGGGGCGTCTTGT 62.096 66.667 23.50 0.00 0.00 3.16
112 113 2.813226 TTTCATCCCGGGGCGTCTTG 62.813 60.000 23.50 9.22 0.00 3.02
113 114 2.536997 CTTTCATCCCGGGGCGTCTT 62.537 60.000 23.50 0.00 0.00 3.01
114 115 3.006728 TTTCATCCCGGGGCGTCT 61.007 61.111 23.50 0.00 0.00 4.18
115 116 2.513897 CTTTCATCCCGGGGCGTC 60.514 66.667 23.50 0.00 0.00 5.19
116 117 4.109675 CCTTTCATCCCGGGGCGT 62.110 66.667 23.50 4.08 0.00 5.68
118 119 3.955543 TTGCCTTTCATCCCGGGGC 62.956 63.158 23.50 15.04 42.73 5.80
119 120 1.304879 TTTGCCTTTCATCCCGGGG 60.305 57.895 23.50 6.77 0.00 5.73
120 121 1.322538 CCTTTGCCTTTCATCCCGGG 61.323 60.000 16.85 16.85 0.00 5.73
121 122 1.322538 CCCTTTGCCTTTCATCCCGG 61.323 60.000 0.00 0.00 0.00 5.73
122 123 1.322538 CCCCTTTGCCTTTCATCCCG 61.323 60.000 0.00 0.00 0.00 5.14
123 124 0.977627 CCCCCTTTGCCTTTCATCCC 60.978 60.000 0.00 0.00 0.00 3.85
124 125 1.617018 GCCCCCTTTGCCTTTCATCC 61.617 60.000 0.00 0.00 0.00 3.51
125 126 0.615827 AGCCCCCTTTGCCTTTCATC 60.616 55.000 0.00 0.00 0.00 2.92
126 127 0.906282 CAGCCCCCTTTGCCTTTCAT 60.906 55.000 0.00 0.00 0.00 2.57
127 128 1.533753 CAGCCCCCTTTGCCTTTCA 60.534 57.895 0.00 0.00 0.00 2.69
128 129 2.947532 GCAGCCCCCTTTGCCTTTC 61.948 63.158 0.00 0.00 34.28 2.62
129 130 2.924635 GCAGCCCCCTTTGCCTTT 60.925 61.111 0.00 0.00 34.28 3.11
130 131 3.551081 ATGCAGCCCCCTTTGCCTT 62.551 57.895 0.00 0.00 39.54 4.35
131 132 4.001956 ATGCAGCCCCCTTTGCCT 62.002 61.111 0.00 0.00 39.54 4.75
132 133 3.777910 CATGCAGCCCCCTTTGCC 61.778 66.667 0.00 0.00 39.54 4.52
133 134 4.462280 GCATGCAGCCCCCTTTGC 62.462 66.667 14.21 0.00 40.67 3.68
134 135 2.998480 TGCATGCAGCCCCCTTTG 60.998 61.111 18.46 0.00 44.83 2.77
135 136 2.682494 CTGCATGCAGCCCCCTTT 60.682 61.111 33.18 0.00 44.83 3.11
136 137 4.772231 CCTGCATGCAGCCCCCTT 62.772 66.667 37.11 0.00 44.83 3.95
140 141 4.783621 TCGTCCTGCATGCAGCCC 62.784 66.667 37.11 27.39 44.83 5.19
141 142 3.200593 CTCGTCCTGCATGCAGCC 61.201 66.667 37.11 27.71 44.83 4.85
142 143 3.200593 CCTCGTCCTGCATGCAGC 61.201 66.667 37.11 24.95 42.35 5.25
143 144 2.513204 CCCTCGTCCTGCATGCAG 60.513 66.667 35.88 35.88 43.26 4.41
144 145 4.783621 GCCCTCGTCCTGCATGCA 62.784 66.667 21.29 21.29 0.00 3.96
177 178 3.667429 GAGTTGATTGCACGGCCGC 62.667 63.158 28.58 11.00 0.00 6.53
178 179 2.480555 GAGTTGATTGCACGGCCG 59.519 61.111 26.86 26.86 0.00 6.13
179 180 1.244019 AAGGAGTTGATTGCACGGCC 61.244 55.000 0.00 0.00 0.00 6.13
180 181 0.169009 GAAGGAGTTGATTGCACGGC 59.831 55.000 0.00 0.00 0.00 5.68
181 182 0.804989 GGAAGGAGTTGATTGCACGG 59.195 55.000 0.00 0.00 0.00 4.94
182 183 0.804989 GGGAAGGAGTTGATTGCACG 59.195 55.000 0.00 0.00 0.00 5.34
183 184 1.541588 GTGGGAAGGAGTTGATTGCAC 59.458 52.381 0.00 0.00 0.00 4.57
184 185 1.425066 AGTGGGAAGGAGTTGATTGCA 59.575 47.619 0.00 0.00 0.00 4.08
185 186 2.087646 GAGTGGGAAGGAGTTGATTGC 58.912 52.381 0.00 0.00 0.00 3.56
186 187 2.619074 GGGAGTGGGAAGGAGTTGATTG 60.619 54.545 0.00 0.00 0.00 2.67
187 188 1.636003 GGGAGTGGGAAGGAGTTGATT 59.364 52.381 0.00 0.00 0.00 2.57
188 189 1.290134 GGGAGTGGGAAGGAGTTGAT 58.710 55.000 0.00 0.00 0.00 2.57
189 190 0.104672 TGGGAGTGGGAAGGAGTTGA 60.105 55.000 0.00 0.00 0.00 3.18
190 191 0.036875 GTGGGAGTGGGAAGGAGTTG 59.963 60.000 0.00 0.00 0.00 3.16
191 192 1.134438 GGTGGGAGTGGGAAGGAGTT 61.134 60.000 0.00 0.00 0.00 3.01
192 193 1.539124 GGTGGGAGTGGGAAGGAGT 60.539 63.158 0.00 0.00 0.00 3.85
193 194 2.301738 GGGTGGGAGTGGGAAGGAG 61.302 68.421 0.00 0.00 0.00 3.69
194 195 2.204090 GGGTGGGAGTGGGAAGGA 60.204 66.667 0.00 0.00 0.00 3.36
195 196 3.339093 GGGGTGGGAGTGGGAAGG 61.339 72.222 0.00 0.00 0.00 3.46
196 197 3.717294 CGGGGTGGGAGTGGGAAG 61.717 72.222 0.00 0.00 0.00 3.46
207 208 3.093835 TTATGGGGGAGCGGGGTG 61.094 66.667 0.00 0.00 0.00 4.61
208 209 3.094498 GTTATGGGGGAGCGGGGT 61.094 66.667 0.00 0.00 0.00 4.95
209 210 4.250305 CGTTATGGGGGAGCGGGG 62.250 72.222 0.00 0.00 0.00 5.73
210 211 4.250305 CCGTTATGGGGGAGCGGG 62.250 72.222 0.00 0.00 38.86 6.13
211 212 2.135581 TACCGTTATGGGGGAGCGG 61.136 63.158 0.00 0.00 46.83 5.52
212 213 1.068585 GTACCGTTATGGGGGAGCG 59.931 63.158 0.00 0.00 44.64 5.03
213 214 1.448924 GGTACCGTTATGGGGGAGC 59.551 63.158 0.00 0.00 44.64 4.70
214 215 1.744014 CGGTACCGTTATGGGGGAG 59.256 63.158 26.39 0.00 44.64 4.30
215 216 2.433994 GCGGTACCGTTATGGGGGA 61.434 63.158 33.34 0.00 44.64 4.81
216 217 2.109593 GCGGTACCGTTATGGGGG 59.890 66.667 33.34 4.71 44.64 5.40
217 218 2.109593 GGCGGTACCGTTATGGGG 59.890 66.667 33.34 5.47 44.64 4.96
218 219 1.068585 GAGGCGGTACCGTTATGGG 59.931 63.158 33.34 6.25 46.52 4.00
219 220 1.068585 GGAGGCGGTACCGTTATGG 59.931 63.158 33.34 7.02 46.52 2.74
220 221 1.299620 CGGAGGCGGTACCGTTATG 60.300 63.158 33.34 16.96 46.52 1.90
221 222 3.122850 CGGAGGCGGTACCGTTAT 58.877 61.111 33.34 20.27 46.52 1.89
227 228 3.902086 GAGGAGCGGAGGCGGTAC 61.902 72.222 0.00 0.00 46.35 3.34
232 233 3.418744 GAAGACGAGGAGCGGAGGC 62.419 68.421 0.00 0.00 46.49 4.70
233 234 1.720694 GAGAAGACGAGGAGCGGAGG 61.721 65.000 0.00 0.00 46.49 4.30
234 235 1.725066 GAGAAGACGAGGAGCGGAG 59.275 63.158 0.00 0.00 46.49 4.63
235 236 2.107292 CGAGAAGACGAGGAGCGGA 61.107 63.158 0.00 0.00 46.49 5.54
236 237 2.405594 CGAGAAGACGAGGAGCGG 59.594 66.667 0.00 0.00 46.49 5.52
238 239 2.277628 CGCGAGAAGACGAGGAGC 60.278 66.667 0.00 0.00 35.09 4.70
239 240 2.277628 GCGCGAGAAGACGAGGAG 60.278 66.667 12.10 0.00 34.05 3.69
240 241 2.746671 AGCGCGAGAAGACGAGGA 60.747 61.111 12.10 0.00 34.05 3.71
241 242 2.277628 GAGCGCGAGAAGACGAGG 60.278 66.667 12.10 0.00 34.05 4.63
242 243 2.277628 GGAGCGCGAGAAGACGAG 60.278 66.667 12.10 0.00 36.29 4.18
243 244 3.812019 GGGAGCGCGAGAAGACGA 61.812 66.667 12.10 0.00 35.09 4.20
245 246 4.117661 ACGGGAGCGCGAGAAGAC 62.118 66.667 12.10 0.00 0.00 3.01
246 247 3.812019 GACGGGAGCGCGAGAAGA 61.812 66.667 12.10 0.00 0.00 2.87
247 248 4.856607 GGACGGGAGCGCGAGAAG 62.857 72.222 12.10 0.00 0.00 2.85
263 264 0.321919 CATGGCACTATCCATCGGGG 60.322 60.000 0.00 0.00 44.63 5.73
264 265 0.321919 CCATGGCACTATCCATCGGG 60.322 60.000 0.00 0.00 44.63 5.14
265 266 0.686789 TCCATGGCACTATCCATCGG 59.313 55.000 6.96 0.00 44.63 4.18
266 267 2.745821 CAATCCATGGCACTATCCATCG 59.254 50.000 6.96 0.00 44.63 3.84
267 268 3.087031 CCAATCCATGGCACTATCCATC 58.913 50.000 6.96 0.00 44.63 3.51
269 270 2.662535 CCAATCCATGGCACTATCCA 57.337 50.000 6.96 0.00 43.80 3.41
279 280 3.446161 AGTTTGACATGCTCCAATCCATG 59.554 43.478 0.00 0.00 43.34 3.66
280 281 3.705051 AGTTTGACATGCTCCAATCCAT 58.295 40.909 0.00 0.00 0.00 3.41
281 282 3.159213 AGTTTGACATGCTCCAATCCA 57.841 42.857 0.00 0.00 0.00 3.41
282 283 3.507233 TCAAGTTTGACATGCTCCAATCC 59.493 43.478 0.00 0.00 31.01 3.01
283 284 4.771590 TCAAGTTTGACATGCTCCAATC 57.228 40.909 0.00 0.00 31.01 2.67
284 285 5.534207 TTTCAAGTTTGACATGCTCCAAT 57.466 34.783 0.00 0.00 36.83 3.16
285 286 4.737352 GCTTTCAAGTTTGACATGCTCCAA 60.737 41.667 0.00 0.00 36.83 3.53
286 287 3.243501 GCTTTCAAGTTTGACATGCTCCA 60.244 43.478 0.00 0.00 36.83 3.86
287 288 3.311966 GCTTTCAAGTTTGACATGCTCC 58.688 45.455 0.00 0.00 36.83 4.70
288 289 3.005155 AGGCTTTCAAGTTTGACATGCTC 59.995 43.478 0.00 0.00 36.83 4.26
289 290 2.961062 AGGCTTTCAAGTTTGACATGCT 59.039 40.909 0.00 0.00 36.83 3.79
290 291 3.054878 CAGGCTTTCAAGTTTGACATGC 58.945 45.455 0.00 0.23 36.83 4.06
291 292 3.553508 CCCAGGCTTTCAAGTTTGACATG 60.554 47.826 0.00 0.00 36.83 3.21
292 293 2.629617 CCCAGGCTTTCAAGTTTGACAT 59.370 45.455 0.00 0.00 36.83 3.06
293 294 2.031120 CCCAGGCTTTCAAGTTTGACA 58.969 47.619 0.00 0.00 36.83 3.58
294 295 1.341209 CCCCAGGCTTTCAAGTTTGAC 59.659 52.381 0.00 0.00 36.83 3.18
295 296 1.703411 CCCCAGGCTTTCAAGTTTGA 58.297 50.000 0.00 0.00 34.92 2.69
296 297 0.033920 GCCCCAGGCTTTCAAGTTTG 59.966 55.000 0.00 0.00 46.69 2.93
297 298 2.440946 GCCCCAGGCTTTCAAGTTT 58.559 52.632 0.00 0.00 46.69 2.66
298 299 4.198087 GCCCCAGGCTTTCAAGTT 57.802 55.556 0.00 0.00 46.69 2.66
308 309 1.152963 CCTCATTTACGGCCCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
309 310 1.152963 CCCTCATTTACGGCCCCAG 60.153 63.158 0.00 0.00 0.00 4.45
310 311 3.003230 CCCTCATTTACGGCCCCA 58.997 61.111 0.00 0.00 0.00 4.96
311 312 2.518587 GCCCTCATTTACGGCCCC 60.519 66.667 0.00 0.00 36.63 5.80
312 313 2.900337 CGCCCTCATTTACGGCCC 60.900 66.667 0.00 0.00 39.66 5.80
313 314 2.124860 ACGCCCTCATTTACGGCC 60.125 61.111 0.00 0.00 39.66 6.13
314 315 3.098555 CACGCCCTCATTTACGGC 58.901 61.111 0.00 0.00 39.41 5.68
315 316 1.449601 AGCACGCCCTCATTTACGG 60.450 57.895 0.00 0.00 0.00 4.02
316 317 1.019278 ACAGCACGCCCTCATTTACG 61.019 55.000 0.00 0.00 0.00 3.18
317 318 0.447801 CACAGCACGCCCTCATTTAC 59.552 55.000 0.00 0.00 0.00 2.01
318 319 0.036164 ACACAGCACGCCCTCATTTA 59.964 50.000 0.00 0.00 0.00 1.40
319 320 0.823356 AACACAGCACGCCCTCATTT 60.823 50.000 0.00 0.00 0.00 2.32
320 321 1.228245 AACACAGCACGCCCTCATT 60.228 52.632 0.00 0.00 0.00 2.57
321 322 1.672356 GAACACAGCACGCCCTCAT 60.672 57.895 0.00 0.00 0.00 2.90
322 323 2.280797 GAACACAGCACGCCCTCA 60.281 61.111 0.00 0.00 0.00 3.86
323 324 1.672356 ATGAACACAGCACGCCCTC 60.672 57.895 0.00 0.00 0.00 4.30
324 325 1.968017 CATGAACACAGCACGCCCT 60.968 57.895 0.00 0.00 0.00 5.19
325 326 2.562912 CATGAACACAGCACGCCC 59.437 61.111 0.00 0.00 0.00 6.13
326 327 1.915614 CTCCATGAACACAGCACGCC 61.916 60.000 0.00 0.00 0.00 5.68
327 328 1.499056 CTCCATGAACACAGCACGC 59.501 57.895 0.00 0.00 0.00 5.34
328 329 1.499056 GCTCCATGAACACAGCACG 59.501 57.895 0.00 0.00 0.00 5.34
329 330 0.607489 AGGCTCCATGAACACAGCAC 60.607 55.000 0.00 0.00 33.22 4.40
330 331 0.983467 TAGGCTCCATGAACACAGCA 59.017 50.000 0.00 0.00 33.22 4.41
331 332 1.661341 CTAGGCTCCATGAACACAGC 58.339 55.000 0.00 0.00 0.00 4.40
332 333 1.209019 AGCTAGGCTCCATGAACACAG 59.791 52.381 0.00 0.00 30.62 3.66
333 334 1.065926 CAGCTAGGCTCCATGAACACA 60.066 52.381 0.00 0.00 36.40 3.72
334 335 1.661341 CAGCTAGGCTCCATGAACAC 58.339 55.000 0.00 0.00 36.40 3.32
335 336 0.543277 CCAGCTAGGCTCCATGAACA 59.457 55.000 0.00 0.00 36.40 3.18
336 337 0.543749 ACCAGCTAGGCTCCATGAAC 59.456 55.000 0.00 0.00 43.14 3.18
337 338 1.289160 AACCAGCTAGGCTCCATGAA 58.711 50.000 0.00 0.00 43.14 2.57
338 339 1.289160 AAACCAGCTAGGCTCCATGA 58.711 50.000 0.00 0.00 43.14 3.07
339 340 3.406764 GATAAACCAGCTAGGCTCCATG 58.593 50.000 0.00 0.00 43.14 3.66
340 341 2.373502 GGATAAACCAGCTAGGCTCCAT 59.626 50.000 0.00 0.00 43.14 3.41
341 342 1.768870 GGATAAACCAGCTAGGCTCCA 59.231 52.381 0.00 0.00 43.14 3.86
342 343 1.072489 GGGATAAACCAGCTAGGCTCC 59.928 57.143 0.00 4.45 43.14 4.70
343 344 2.050918 AGGGATAAACCAGCTAGGCTC 58.949 52.381 0.00 0.00 43.14 4.70
344 345 1.771255 CAGGGATAAACCAGCTAGGCT 59.229 52.381 0.00 0.00 43.14 4.58
345 346 1.768870 TCAGGGATAAACCAGCTAGGC 59.231 52.381 2.50 0.00 43.14 3.93
375 376 6.546403 GGAAGCATCTATATACCGTAGATGGA 59.454 42.308 19.16 6.46 41.80 3.41
376 377 6.321435 TGGAAGCATCTATATACCGTAGATGG 59.679 42.308 19.16 1.62 41.80 3.51
378 379 6.547880 CCTGGAAGCATCTATATACCGTAGAT 59.452 42.308 0.00 0.00 38.98 1.98
386 387 4.410228 GCATCCCCTGGAAGCATCTATATA 59.590 45.833 5.53 0.00 44.62 0.86
387 388 3.201708 GCATCCCCTGGAAGCATCTATAT 59.798 47.826 5.53 0.00 44.62 0.86
388 389 2.573462 GCATCCCCTGGAAGCATCTATA 59.427 50.000 5.53 0.00 44.62 1.31
389 390 1.353694 GCATCCCCTGGAAGCATCTAT 59.646 52.381 5.53 0.00 44.62 1.98
397 398 0.334676 AAATTCCGCATCCCCTGGAA 59.665 50.000 0.00 0.00 45.22 3.53
399 400 0.106519 AGAAATTCCGCATCCCCTGG 60.107 55.000 0.00 0.00 0.00 4.45
414 415 2.198406 GCATGGTGTATCGCGTAGAAA 58.802 47.619 5.77 0.00 0.00 2.52
417 418 1.275471 CGGCATGGTGTATCGCGTAG 61.275 60.000 5.77 0.00 0.00 3.51
425 426 3.149981 TCAAACATTTCGGCATGGTGTA 58.850 40.909 0.00 0.00 0.00 2.90
429 430 2.412770 GCTTTCAAACATTTCGGCATGG 59.587 45.455 0.00 0.00 0.00 3.66
450 451 9.696917 AACAGAGAATTAAAATGGCTTTTACTG 57.303 29.630 0.00 0.00 36.73 2.74
475 480 4.043561 TCAAGCCCTCCATTACCTACAAAA 59.956 41.667 0.00 0.00 0.00 2.44
479 484 3.926058 TTCAAGCCCTCCATTACCTAC 57.074 47.619 0.00 0.00 0.00 3.18
480 485 3.850173 AGTTTCAAGCCCTCCATTACCTA 59.150 43.478 0.00 0.00 0.00 3.08
481 486 2.649816 AGTTTCAAGCCCTCCATTACCT 59.350 45.455 0.00 0.00 0.00 3.08
482 487 2.755103 CAGTTTCAAGCCCTCCATTACC 59.245 50.000 0.00 0.00 0.00 2.85
523 528 4.803426 CGCTCTCGGGTGACAGCC 62.803 72.222 13.93 13.93 33.03 4.85
524 529 3.691744 CTCGCTCTCGGGTGACAGC 62.692 68.421 0.00 0.00 33.28 4.40
606 625 2.668280 GGACGAGACTTGCGTTGCC 61.668 63.158 0.00 0.00 42.77 4.52
607 626 1.291877 ATGGACGAGACTTGCGTTGC 61.292 55.000 0.00 0.00 42.77 4.17
675 694 3.818121 TTCCGGCTCGTGGTTGTGG 62.818 63.158 0.00 0.00 0.00 4.17
711 730 4.755507 AGGGGAGGACGGACGGAC 62.756 72.222 0.00 0.00 0.00 4.79
712 731 4.753662 CAGGGGAGGACGGACGGA 62.754 72.222 0.00 0.00 0.00 4.69
715 734 2.595009 GAATGCAGGGGAGGACGGAC 62.595 65.000 0.00 0.00 0.00 4.79
767 786 3.179869 ATGAGAGCGAGCGAGCGAG 62.180 63.158 1.41 0.00 43.00 5.03
883 922 5.038033 CGAGGAAAGAAAGAATCGAGTAGG 58.962 45.833 0.00 0.00 32.13 3.18
884 923 5.038033 CCGAGGAAAGAAAGAATCGAGTAG 58.962 45.833 0.00 0.00 32.13 2.57
885 924 4.461781 ACCGAGGAAAGAAAGAATCGAGTA 59.538 41.667 0.00 0.00 32.13 2.59
888 927 3.510360 AGACCGAGGAAAGAAAGAATCGA 59.490 43.478 0.00 0.00 32.13 3.59
913 952 1.303561 AATCGAGCTGCCTGCCAAA 60.304 52.632 0.00 0.00 44.23 3.28
989 1051 4.864334 CCGCCATGGCTCCTGGAC 62.864 72.222 33.07 3.30 39.32 4.02
1047 1109 3.036084 GACGTGACCCTGTGCGTG 61.036 66.667 0.00 0.00 37.71 5.34
1204 1266 2.047274 CTCCTCCGCGCCAAAGAA 60.047 61.111 0.00 0.00 0.00 2.52
1215 1277 3.844090 GCAGCGTCCTCCTCCTCC 61.844 72.222 0.00 0.00 0.00 4.30
1385 1447 1.979308 CTGCATCCCTCATCATCTCCT 59.021 52.381 0.00 0.00 0.00 3.69
1401 1463 2.046892 GCGCCTTCCTCTTCTGCA 60.047 61.111 0.00 0.00 0.00 4.41
1404 1466 2.997897 ACGGCGCCTTCCTCTTCT 60.998 61.111 26.68 0.00 0.00 2.85
1446 1508 3.673594 CGCGTGAAGAAGGAATCTGTACT 60.674 47.826 0.00 0.00 38.79 2.73
1456 1518 2.470286 GAACGCGCGTGAAGAAGG 59.530 61.111 38.44 3.43 0.00 3.46
1471 1533 1.533129 CGCGTGTGTATCATCCTCGAA 60.533 52.381 0.00 0.00 0.00 3.71
1473 1535 0.028902 TCGCGTGTGTATCATCCTCG 59.971 55.000 5.77 0.00 0.00 4.63
1480 1542 0.454600 TCTTCCCTCGCGTGTGTATC 59.545 55.000 5.77 0.00 0.00 2.24
1481 1543 1.067212 GATCTTCCCTCGCGTGTGTAT 59.933 52.381 5.77 0.00 0.00 2.29
1482 1544 0.454600 GATCTTCCCTCGCGTGTGTA 59.545 55.000 5.77 0.00 0.00 2.90
1483 1545 1.215647 GATCTTCCCTCGCGTGTGT 59.784 57.895 5.77 0.00 0.00 3.72
1484 1546 1.519455 GGATCTTCCCTCGCGTGTG 60.519 63.158 5.77 0.00 0.00 3.82
1485 1547 1.682684 AGGATCTTCCCTCGCGTGT 60.683 57.895 5.77 0.00 37.19 4.49
1486 1548 1.227089 CAGGATCTTCCCTCGCGTG 60.227 63.158 5.77 2.75 37.19 5.34
1487 1549 3.082579 GCAGGATCTTCCCTCGCGT 62.083 63.158 5.77 0.00 37.19 6.01
1488 1550 2.279784 GCAGGATCTTCCCTCGCG 60.280 66.667 0.00 0.00 37.19 5.87
1489 1551 2.110006 GGCAGGATCTTCCCTCGC 59.890 66.667 0.00 0.00 37.19 5.03
1490 1552 1.107538 TACGGCAGGATCTTCCCTCG 61.108 60.000 0.00 0.00 37.19 4.63
1491 1553 0.389757 GTACGGCAGGATCTTCCCTC 59.610 60.000 0.00 0.00 37.19 4.30
1492 1554 0.032017 AGTACGGCAGGATCTTCCCT 60.032 55.000 0.00 0.00 37.19 4.20
1493 1555 0.389757 GAGTACGGCAGGATCTTCCC 59.610 60.000 0.00 0.00 37.19 3.97
1494 1556 0.030908 CGAGTACGGCAGGATCTTCC 59.969 60.000 0.00 0.00 34.53 3.46
1495 1557 1.002251 CTCGAGTACGGCAGGATCTTC 60.002 57.143 3.62 0.00 40.21 2.87
1496 1558 1.025812 CTCGAGTACGGCAGGATCTT 58.974 55.000 3.62 0.00 40.21 2.40
1497 1559 0.180642 TCTCGAGTACGGCAGGATCT 59.819 55.000 13.13 0.00 40.21 2.75
1498 1560 1.002251 CTTCTCGAGTACGGCAGGATC 60.002 57.143 13.13 0.00 40.21 3.36
1499 1561 1.025812 CTTCTCGAGTACGGCAGGAT 58.974 55.000 13.13 0.00 40.21 3.24
1500 1562 0.035725 TCTTCTCGAGTACGGCAGGA 60.036 55.000 13.13 0.00 40.21 3.86
1506 1568 0.247735 CGGCTGTCTTCTCGAGTACG 60.248 60.000 13.13 2.25 41.26 3.67
1511 1573 1.200252 CTTCTTCGGCTGTCTTCTCGA 59.800 52.381 0.00 0.00 0.00 4.04
1519 1581 2.910688 TGTTCTTCTTCTTCGGCTGT 57.089 45.000 0.00 0.00 0.00 4.40
1542 1604 1.822990 TCCAGTAGAACGTAGCCTTGG 59.177 52.381 0.00 0.00 0.00 3.61
1592 1654 1.603802 CTTCCTCTTCGTTTTGCTGCA 59.396 47.619 0.00 0.00 0.00 4.41
1617 1679 1.583556 TAATCTCCCCTTGCTGCTCA 58.416 50.000 0.00 0.00 0.00 4.26
1623 1685 2.024306 GCCACCTTAATCTCCCCTTGC 61.024 57.143 0.00 0.00 0.00 4.01
1635 1697 2.925706 TCCACGGCAGCCACCTTA 60.926 61.111 13.30 0.00 0.00 2.69
1734 1796 2.289002 GTCGGCAATTGTCATCTCATCC 59.711 50.000 11.22 0.00 0.00 3.51
1783 1845 2.040939 CATGTCATCCTCCTCAGAGCT 58.959 52.381 0.00 0.00 38.96 4.09
1793 1855 4.938080 GTCTGTACGATTCATGTCATCCT 58.062 43.478 0.00 0.00 0.00 3.24
1843 1905 2.743928 CTCCAGAACCACTGCGGC 60.744 66.667 0.00 0.00 44.52 6.53
1856 1918 1.493861 CAGCATCCTCTTCTCCTCCA 58.506 55.000 0.00 0.00 0.00 3.86
1894 1956 0.622136 TTCTCAGTCATGGCAGGCAT 59.378 50.000 2.93 2.93 0.00 4.40
1895 1957 0.622136 ATTCTCAGTCATGGCAGGCA 59.378 50.000 0.00 0.00 0.00 4.75
1918 1980 4.074970 ACCAGTTCATCATCTTGTGGAAC 58.925 43.478 0.00 0.00 38.44 3.62
2019 2081 2.290008 TGAACGGGCTGAGAAGCAAATA 60.290 45.455 0.00 0.00 36.33 1.40
2031 2093 5.161943 ACTAGAGTTAAATTGAACGGGCT 57.838 39.130 0.00 2.75 34.36 5.19
2045 2107 4.597004 TGGGACAGTAATCGACTAGAGTT 58.403 43.478 0.00 0.00 35.64 3.01
2086 2148 1.239968 GCTTCAGTGGCTGGAACCAG 61.240 60.000 15.64 15.64 41.46 4.00
2167 2235 2.099062 CTGCTCGCAAATGTCGCC 59.901 61.111 0.00 0.00 0.00 5.54
2175 2243 1.022982 CATCTTGCTCCTGCTCGCAA 61.023 55.000 0.00 0.00 43.21 4.85
2283 2351 1.342374 GGGGCTGTTTCATGGAGGATT 60.342 52.381 0.00 0.00 0.00 3.01
2307 2375 6.560003 ATGATTGTACCACTACCTTGATCA 57.440 37.500 0.00 0.00 0.00 2.92
2340 2408 5.379187 TGGGGTAAAGGTAAAAAGTGAGAC 58.621 41.667 0.00 0.00 0.00 3.36
2348 2416 5.420739 GCATCTCAATGGGGTAAAGGTAAAA 59.579 40.000 0.00 0.00 33.19 1.52
2354 2422 4.706476 TGAAAGCATCTCAATGGGGTAAAG 59.294 41.667 0.00 0.00 33.19 1.85
2358 2426 2.225091 TGTGAAAGCATCTCAATGGGGT 60.225 45.455 0.00 0.00 33.19 4.95
2472 2545 6.051717 CCATTCGATTGGTACTCAAATCTCT 58.948 40.000 16.57 0.00 39.05 3.10
2641 2714 4.675029 ACGGTGGAAGGTTCGGCG 62.675 66.667 0.00 0.00 0.00 6.46
2707 2780 1.452953 CCTCCAGCTCGGCGTACATA 61.453 60.000 6.85 0.00 33.14 2.29
2851 2924 2.772691 CGCCTCCTGGTCGTACTCC 61.773 68.421 0.00 0.00 35.27 3.85
2884 2957 1.079543 CCTCTTGGTGACCAGCTCG 60.080 63.158 3.77 0.00 33.81 5.03
2954 3027 0.734253 CTGTCCTCGTAGTGCAGCAC 60.734 60.000 18.55 18.55 34.10 4.40
2962 3035 0.547075 TCCTCTCCCTGTCCTCGTAG 59.453 60.000 0.00 0.00 0.00 3.51
3016 3089 2.973600 GTGCCGTTGCCGTTGGTA 60.974 61.111 0.00 0.00 36.33 3.25
3058 3131 3.570125 AGTCATCGGAATTCTCATCGCTA 59.430 43.478 5.23 0.00 0.00 4.26
3164 3237 3.499737 CGCCACAAGATGACCGGC 61.500 66.667 0.00 0.00 39.45 6.13
3223 3296 1.765314 GCCTTGAGCTCCTCCAAGATA 59.235 52.381 12.15 0.00 38.99 1.98
3250 3323 1.603236 CCAGCGTGAAGAGCCTCTCT 61.603 60.000 0.00 0.00 43.37 3.10
3329 3405 1.153289 GCGGACCATCAGCTGACAT 60.153 57.895 20.97 7.29 34.72 3.06
3337 3413 1.449423 CGGTGAATGCGGACCATCA 60.449 57.895 0.00 0.00 31.43 3.07
3340 3416 4.402528 CCCGGTGAATGCGGACCA 62.403 66.667 0.00 0.00 31.97 4.02
3346 3422 1.379843 ACCATTCCCCGGTGAATGC 60.380 57.895 28.27 0.00 46.61 3.56
3352 3428 3.782443 GCGAGACCATTCCCCGGT 61.782 66.667 0.00 0.00 40.30 5.28
3357 3433 3.969250 TTGCCGGCGAGACCATTCC 62.969 63.158 23.90 0.00 39.03 3.01
3453 3529 0.179111 TGATGGACGATCGCAGTTCC 60.179 55.000 16.60 15.04 33.17 3.62
3484 3560 1.466950 GCCGGTTTCGTCAAATCATCA 59.533 47.619 1.90 0.00 33.95 3.07
3607 3683 2.177950 GGACTTGATGCAGTGCCTG 58.822 57.895 13.72 0.61 34.12 4.85
3628 3704 0.112412 TGCCCTTGTCCCCTTTCTTC 59.888 55.000 0.00 0.00 0.00 2.87
3793 3869 2.022764 GCAAGGGCAAAACACAAACT 57.977 45.000 0.00 0.00 40.72 2.66
3883 3959 1.197721 GTTTCAGGACATCGTTGCTGG 59.802 52.381 0.00 0.00 0.00 4.85
3884 3960 1.872952 TGTTTCAGGACATCGTTGCTG 59.127 47.619 0.00 0.00 0.00 4.41
3885 3961 2.254546 TGTTTCAGGACATCGTTGCT 57.745 45.000 0.00 0.00 0.00 3.91
3886 3962 3.492313 GATTGTTTCAGGACATCGTTGC 58.508 45.455 0.00 0.00 0.00 4.17
3888 3964 3.659786 TCGATTGTTTCAGGACATCGTT 58.340 40.909 0.00 0.00 34.84 3.85
3889 3965 3.313012 TCGATTGTTTCAGGACATCGT 57.687 42.857 0.00 0.00 34.84 3.73
3890 3966 4.864916 AATCGATTGTTTCAGGACATCG 57.135 40.909 10.50 0.00 34.70 3.84
3931 4014 0.833287 ACTCACCATAGCCGAGCAAT 59.167 50.000 0.00 0.00 0.00 3.56
4100 4187 0.033796 ATGATTCCTGCCACCACCAG 60.034 55.000 0.00 0.00 0.00 4.00
4189 4276 3.811083 TCCCTCTCTCTTATCTGTCGTC 58.189 50.000 0.00 0.00 0.00 4.20
4190 4277 3.456644 TCTCCCTCTCTCTTATCTGTCGT 59.543 47.826 0.00 0.00 0.00 4.34
4191 4278 4.065088 CTCTCCCTCTCTCTTATCTGTCG 58.935 52.174 0.00 0.00 0.00 4.35
4192 4279 5.304686 TCTCTCCCTCTCTCTTATCTGTC 57.695 47.826 0.00 0.00 0.00 3.51
4194 4281 6.306199 TGATTCTCTCCCTCTCTCTTATCTG 58.694 44.000 0.00 0.00 0.00 2.90
4195 4282 6.529084 TGATTCTCTCCCTCTCTCTTATCT 57.471 41.667 0.00 0.00 0.00 1.98
4196 4283 5.183904 GCTGATTCTCTCCCTCTCTCTTATC 59.816 48.000 0.00 0.00 0.00 1.75
4197 4284 5.079643 GCTGATTCTCTCCCTCTCTCTTAT 58.920 45.833 0.00 0.00 0.00 1.73
4198 4285 4.079500 TGCTGATTCTCTCCCTCTCTCTTA 60.080 45.833 0.00 0.00 0.00 2.10
4208 4312 3.078891 ACCCTTTTGCTGATTCTCTCC 57.921 47.619 0.00 0.00 0.00 3.71
4218 4322 1.338107 GCCACCTTTACCCTTTTGCT 58.662 50.000 0.00 0.00 0.00 3.91
4240 4344 1.671979 AATCCACCACATCTGCATCG 58.328 50.000 0.00 0.00 0.00 3.84
4269 4374 5.690997 AGAAAAGGGAAAAAGAAGCGTAG 57.309 39.130 0.00 0.00 0.00 3.51
4271 4376 5.127194 AGAAAGAAAAGGGAAAAAGAAGCGT 59.873 36.000 0.00 0.00 0.00 5.07
4312 4422 4.144297 ACACACCTCTGCACAAACATATT 58.856 39.130 0.00 0.00 0.00 1.28
4315 4425 2.057137 ACACACCTCTGCACAAACAT 57.943 45.000 0.00 0.00 0.00 2.71
4369 4505 3.370672 GTGCAAAACAAAGACCAAACCAG 59.629 43.478 0.00 0.00 0.00 4.00
4460 4601 1.742268 GAAGAAGCATCAAGGACCAGC 59.258 52.381 0.00 0.00 0.00 4.85
4484 4627 2.626743 CGGGAGGGTCGAATAATGTACT 59.373 50.000 0.00 0.00 0.00 2.73
4662 4813 9.522804 AAACGTTTTGAGTAATGCAAGAATTTA 57.477 25.926 7.96 0.00 0.00 1.40
4664 4815 9.180678 CTAAACGTTTTGAGTAATGCAAGAATT 57.819 29.630 20.19 0.00 0.00 2.17
4722 4873 1.303236 TCGTTCCATGCCCAAGTGG 60.303 57.895 0.00 0.00 36.82 4.00
4723 4874 1.308069 CCTCGTTCCATGCCCAAGTG 61.308 60.000 0.00 0.00 0.00 3.16
4724 4875 1.002134 CCTCGTTCCATGCCCAAGT 60.002 57.895 0.00 0.00 0.00 3.16
4725 4876 1.002134 ACCTCGTTCCATGCCCAAG 60.002 57.895 0.00 0.00 0.00 3.61
4726 4877 1.303236 CACCTCGTTCCATGCCCAA 60.303 57.895 0.00 0.00 0.00 4.12
4727 4878 2.350895 CACCTCGTTCCATGCCCA 59.649 61.111 0.00 0.00 0.00 5.36
4728 4879 2.438434 CCACCTCGTTCCATGCCC 60.438 66.667 0.00 0.00 0.00 5.36
4729 4880 2.438434 CCCACCTCGTTCCATGCC 60.438 66.667 0.00 0.00 0.00 4.40
4730 4881 1.450312 CTCCCACCTCGTTCCATGC 60.450 63.158 0.00 0.00 0.00 4.06
4731 4882 4.941609 CTCCCACCTCGTTCCATG 57.058 61.111 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.