Multiple sequence alignment - TraesCS4B01G217700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G217700 chr4B 100.000 3980 0 0 1 3980 459076725 459072746 0.000000e+00 7350
1 TraesCS4B01G217700 chr4B 77.596 1281 258 18 1718 2987 107799169 107797907 0.000000e+00 749
2 TraesCS4B01G217700 chr4D 90.218 1697 146 10 627 2317 373636297 373637979 0.000000e+00 2196
3 TraesCS4B01G217700 chr4D 79.899 1980 359 30 1015 2981 75554809 75552856 0.000000e+00 1415
4 TraesCS4B01G217700 chr4D 89.899 396 33 3 3589 3977 373640066 373640461 1.650000e-138 503
5 TraesCS4B01G217700 chr4D 85.377 212 21 5 422 625 317352118 317351909 1.120000e-50 211
6 TraesCS4B01G217700 chr4A 95.349 1333 60 2 995 2326 90878606 90879937 0.000000e+00 2117
7 TraesCS4B01G217700 chr4A 91.268 1191 72 16 2319 3480 90885254 90886441 0.000000e+00 1594
8 TraesCS4B01G217700 chr4A 79.275 1959 342 39 1015 2951 511825990 511824074 0.000000e+00 1310
9 TraesCS4B01G217700 chr4A 91.631 466 28 5 3519 3977 90886449 90886910 5.610000e-178 634
10 TraesCS4B01G217700 chr4A 91.765 340 27 1 1 339 731847738 731848077 4.660000e-129 472
11 TraesCS4B01G217700 chr4A 85.096 208 24 4 424 625 59252481 59252687 5.210000e-49 206
12 TraesCS4B01G217700 chr1A 86.935 398 46 2 1 392 451711715 451712112 3.650000e-120 442
13 TraesCS4B01G217700 chr5D 93.750 256 7 2 3676 3922 486916069 486915814 3.760000e-100 375
14 TraesCS4B01G217700 chr6A 85.782 211 24 3 421 625 542704861 542705071 6.700000e-53 219
15 TraesCS4B01G217700 chr3A 89.535 172 18 0 221 392 523148706 523148877 6.700000e-53 219
16 TraesCS4B01G217700 chr3A 95.098 102 4 1 215 316 523001306 523001406 4.120000e-35 159
17 TraesCS4B01G217700 chr3A 95.506 89 3 1 1 89 523001192 523001279 1.490000e-29 141
18 TraesCS4B01G217700 chr2B 86.058 208 23 5 422 625 783237459 783237664 6.700000e-53 219
19 TraesCS4B01G217700 chr2B 85.849 212 17 9 424 625 693065388 693065596 3.120000e-51 213
20 TraesCS4B01G217700 chr5B 86.058 208 22 5 424 625 387765921 387765715 2.410000e-52 217
21 TraesCS4B01G217700 chr7A 85.646 209 20 5 423 623 169762256 169762462 1.120000e-50 211
22 TraesCS4B01G217700 chr7A 86.207 203 17 8 431 625 735502228 735502029 4.030000e-50 209
23 TraesCS4B01G217700 chr7D 85.096 208 23 5 424 625 390080292 390080087 5.210000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G217700 chr4B 459072746 459076725 3979 True 7350.0 7350 100.0000 1 3980 1 chr4B.!!$R2 3979
1 TraesCS4B01G217700 chr4B 107797907 107799169 1262 True 749.0 749 77.5960 1718 2987 1 chr4B.!!$R1 1269
2 TraesCS4B01G217700 chr4D 75552856 75554809 1953 True 1415.0 1415 79.8990 1015 2981 1 chr4D.!!$R1 1966
3 TraesCS4B01G217700 chr4D 373636297 373640461 4164 False 1349.5 2196 90.0585 627 3977 2 chr4D.!!$F1 3350
4 TraesCS4B01G217700 chr4A 90878606 90879937 1331 False 2117.0 2117 95.3490 995 2326 1 chr4A.!!$F2 1331
5 TraesCS4B01G217700 chr4A 511824074 511825990 1916 True 1310.0 1310 79.2750 1015 2951 1 chr4A.!!$R1 1936
6 TraesCS4B01G217700 chr4A 90885254 90886910 1656 False 1114.0 1594 91.4495 2319 3977 2 chr4A.!!$F4 1658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 479 0.036010 CCGTGCTTCCACTTCATCCT 60.036 55.0 0.0 0.0 39.86 3.24 F
819 820 0.173708 GACGCTACAACTCCCCAGAG 59.826 60.0 0.0 0.0 46.36 3.35 F
1989 2001 0.175760 GCACCGAGCTCAACCAGATA 59.824 55.0 15.4 0.0 41.15 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1510 0.456221 CGTAGATGTCTTCGGGCTGT 59.544 55.0 1.68 0.0 33.91 4.40 R
2068 2080 0.554305 TCGCCCCTCACCAGTATCTA 59.446 55.0 0.00 0.0 0.00 1.98 R
2995 3114 0.321671 AACCAGGGACATCACAGACG 59.678 55.0 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 8.931385 ATTGTATCATAATGTTTCACTTTGGC 57.069 30.769 0.00 0.00 0.00 4.52
73 74 6.550843 TGTATCATAATGTTTCACTTTGGCG 58.449 36.000 0.00 0.00 0.00 5.69
74 75 3.832276 TCATAATGTTTCACTTTGGCGC 58.168 40.909 0.00 0.00 0.00 6.53
75 76 3.505680 TCATAATGTTTCACTTTGGCGCT 59.494 39.130 7.64 0.00 0.00 5.92
76 77 4.697828 TCATAATGTTTCACTTTGGCGCTA 59.302 37.500 7.64 0.00 0.00 4.26
77 78 5.356751 TCATAATGTTTCACTTTGGCGCTAT 59.643 36.000 7.64 0.00 0.00 2.97
78 79 6.540551 TCATAATGTTTCACTTTGGCGCTATA 59.459 34.615 7.64 0.00 0.00 1.31
79 80 5.637006 AATGTTTCACTTTGGCGCTATAA 57.363 34.783 7.64 0.00 0.00 0.98
80 81 5.637006 ATGTTTCACTTTGGCGCTATAAA 57.363 34.783 7.64 6.11 0.00 1.40
81 82 5.440234 TGTTTCACTTTGGCGCTATAAAA 57.560 34.783 7.64 2.69 0.00 1.52
82 83 5.833082 TGTTTCACTTTGGCGCTATAAAAA 58.167 33.333 7.64 0.10 0.00 1.94
83 84 5.688176 TGTTTCACTTTGGCGCTATAAAAAC 59.312 36.000 7.64 10.30 0.00 2.43
84 85 5.440234 TTCACTTTGGCGCTATAAAAACA 57.560 34.783 7.64 0.00 0.00 2.83
85 86 5.440234 TCACTTTGGCGCTATAAAAACAA 57.560 34.783 7.64 0.00 0.00 2.83
86 87 5.457140 TCACTTTGGCGCTATAAAAACAAG 58.543 37.500 7.64 2.09 0.00 3.16
87 88 5.239744 TCACTTTGGCGCTATAAAAACAAGA 59.760 36.000 7.64 0.00 0.00 3.02
88 89 6.072175 TCACTTTGGCGCTATAAAAACAAGAT 60.072 34.615 7.64 0.00 0.00 2.40
89 90 6.586082 CACTTTGGCGCTATAAAAACAAGATT 59.414 34.615 7.64 0.00 0.00 2.40
90 91 7.753132 CACTTTGGCGCTATAAAAACAAGATTA 59.247 33.333 7.64 0.00 0.00 1.75
91 92 7.753580 ACTTTGGCGCTATAAAAACAAGATTAC 59.246 33.333 7.64 0.00 0.00 1.89
92 93 6.745159 TGGCGCTATAAAAACAAGATTACA 57.255 33.333 7.64 0.00 0.00 2.41
93 94 7.328277 TGGCGCTATAAAAACAAGATTACAT 57.672 32.000 7.64 0.00 0.00 2.29
94 95 7.767261 TGGCGCTATAAAAACAAGATTACATT 58.233 30.769 7.64 0.00 0.00 2.71
95 96 8.247562 TGGCGCTATAAAAACAAGATTACATTT 58.752 29.630 7.64 0.00 0.00 2.32
96 97 8.531530 GGCGCTATAAAAACAAGATTACATTTG 58.468 33.333 7.64 0.00 0.00 2.32
97 98 9.284594 GCGCTATAAAAACAAGATTACATTTGA 57.715 29.630 0.00 0.00 0.00 2.69
134 135 8.610248 TGGTATTTGACGTATTTTTCTCTTCA 57.390 30.769 0.00 0.00 0.00 3.02
135 136 9.226606 TGGTATTTGACGTATTTTTCTCTTCAT 57.773 29.630 0.00 0.00 0.00 2.57
150 151 7.834068 TTCTCTTCATAATTGAAAGTCTCGG 57.166 36.000 0.00 0.00 41.22 4.63
151 152 7.170393 TCTCTTCATAATTGAAAGTCTCGGA 57.830 36.000 0.00 0.00 41.22 4.55
152 153 7.611770 TCTCTTCATAATTGAAAGTCTCGGAA 58.388 34.615 0.00 0.00 41.22 4.30
153 154 7.545965 TCTCTTCATAATTGAAAGTCTCGGAAC 59.454 37.037 0.00 0.00 41.22 3.62
154 155 7.386851 TCTTCATAATTGAAAGTCTCGGAACT 58.613 34.615 0.00 0.00 41.22 3.01
155 156 8.528643 TCTTCATAATTGAAAGTCTCGGAACTA 58.471 33.333 0.00 0.00 41.22 2.24
156 157 8.703604 TTCATAATTGAAAGTCTCGGAACTAG 57.296 34.615 0.00 0.00 38.90 2.57
157 158 6.757010 TCATAATTGAAAGTCTCGGAACTAGC 59.243 38.462 0.00 0.00 0.00 3.42
158 159 4.537135 ATTGAAAGTCTCGGAACTAGCA 57.463 40.909 0.00 0.00 0.00 3.49
159 160 4.537135 TTGAAAGTCTCGGAACTAGCAT 57.463 40.909 0.00 0.00 0.00 3.79
160 161 4.111375 TGAAAGTCTCGGAACTAGCATC 57.889 45.455 0.00 0.00 0.00 3.91
161 162 3.509967 TGAAAGTCTCGGAACTAGCATCA 59.490 43.478 0.00 0.00 0.00 3.07
162 163 3.512033 AAGTCTCGGAACTAGCATCAC 57.488 47.619 0.00 0.00 0.00 3.06
163 164 2.447443 AGTCTCGGAACTAGCATCACA 58.553 47.619 0.00 0.00 0.00 3.58
164 165 3.027412 AGTCTCGGAACTAGCATCACAT 58.973 45.455 0.00 0.00 0.00 3.21
165 166 3.119291 GTCTCGGAACTAGCATCACATG 58.881 50.000 0.00 0.00 0.00 3.21
166 167 2.760650 TCTCGGAACTAGCATCACATGT 59.239 45.455 0.00 0.00 0.00 3.21
167 168 3.119291 CTCGGAACTAGCATCACATGTC 58.881 50.000 0.00 0.00 0.00 3.06
168 169 2.495669 TCGGAACTAGCATCACATGTCA 59.504 45.455 0.00 0.00 0.00 3.58
169 170 2.604914 CGGAACTAGCATCACATGTCAC 59.395 50.000 0.00 0.00 0.00 3.67
170 171 3.599343 GGAACTAGCATCACATGTCACA 58.401 45.455 0.00 0.00 0.00 3.58
171 172 4.002982 GGAACTAGCATCACATGTCACAA 58.997 43.478 0.00 0.00 0.00 3.33
172 173 4.142816 GGAACTAGCATCACATGTCACAAC 60.143 45.833 0.00 0.00 0.00 3.32
173 174 3.338249 ACTAGCATCACATGTCACAACC 58.662 45.455 0.00 0.00 0.00 3.77
174 175 2.275134 AGCATCACATGTCACAACCA 57.725 45.000 0.00 0.00 0.00 3.67
175 176 2.585330 AGCATCACATGTCACAACCAA 58.415 42.857 0.00 0.00 0.00 3.67
176 177 2.957680 AGCATCACATGTCACAACCAAA 59.042 40.909 0.00 0.00 0.00 3.28
177 178 3.384146 AGCATCACATGTCACAACCAAAA 59.616 39.130 0.00 0.00 0.00 2.44
178 179 3.737266 GCATCACATGTCACAACCAAAAG 59.263 43.478 0.00 0.00 0.00 2.27
179 180 4.499526 GCATCACATGTCACAACCAAAAGA 60.500 41.667 0.00 0.00 0.00 2.52
180 181 5.590145 CATCACATGTCACAACCAAAAGAA 58.410 37.500 0.00 0.00 0.00 2.52
181 182 5.850557 TCACATGTCACAACCAAAAGAAT 57.149 34.783 0.00 0.00 0.00 2.40
182 183 6.219417 TCACATGTCACAACCAAAAGAATT 57.781 33.333 0.00 0.00 0.00 2.17
183 184 7.340122 TCACATGTCACAACCAAAAGAATTA 57.660 32.000 0.00 0.00 0.00 1.40
184 185 7.776107 TCACATGTCACAACCAAAAGAATTAA 58.224 30.769 0.00 0.00 0.00 1.40
185 186 8.420222 TCACATGTCACAACCAAAAGAATTAAT 58.580 29.630 0.00 0.00 0.00 1.40
186 187 9.689976 CACATGTCACAACCAAAAGAATTAATA 57.310 29.630 0.00 0.00 0.00 0.98
237 238 9.474313 ACAAGATAAGAGTTGAGAGAGATTAGT 57.526 33.333 0.00 0.00 0.00 2.24
244 245 9.528489 AAGAGTTGAGAGAGATTAGTAGAAGTT 57.472 33.333 0.00 0.00 0.00 2.66
245 246 8.956426 AGAGTTGAGAGAGATTAGTAGAAGTTG 58.044 37.037 0.00 0.00 0.00 3.16
246 247 8.644374 AGTTGAGAGAGATTAGTAGAAGTTGT 57.356 34.615 0.00 0.00 0.00 3.32
247 248 9.742144 AGTTGAGAGAGATTAGTAGAAGTTGTA 57.258 33.333 0.00 0.00 0.00 2.41
268 269 8.919661 GTTGTAAACTAGAAAGTAATACGCAGT 58.080 33.333 0.00 0.00 45.32 4.40
269 270 8.456904 TGTAAACTAGAAAGTAATACGCAGTG 57.543 34.615 0.00 0.00 36.48 3.66
270 271 6.404712 AAACTAGAAAGTAATACGCAGTGC 57.595 37.500 4.58 4.58 36.48 4.40
271 272 5.326200 ACTAGAAAGTAATACGCAGTGCT 57.674 39.130 14.33 2.88 35.85 4.40
272 273 6.446781 ACTAGAAAGTAATACGCAGTGCTA 57.553 37.500 14.33 5.19 35.85 3.49
273 274 6.860080 ACTAGAAAGTAATACGCAGTGCTAA 58.140 36.000 14.33 0.60 35.85 3.09
274 275 6.750963 ACTAGAAAGTAATACGCAGTGCTAAC 59.249 38.462 14.33 4.00 35.85 2.34
275 276 4.868734 AGAAAGTAATACGCAGTGCTAACC 59.131 41.667 14.33 0.00 45.73 2.85
276 277 4.467198 AAGTAATACGCAGTGCTAACCT 57.533 40.909 14.33 0.00 45.73 3.50
277 278 4.467198 AGTAATACGCAGTGCTAACCTT 57.533 40.909 14.33 2.39 45.73 3.50
278 279 4.181578 AGTAATACGCAGTGCTAACCTTG 58.818 43.478 14.33 0.00 45.73 3.61
279 280 2.024176 ATACGCAGTGCTAACCTTGG 57.976 50.000 14.33 0.00 45.73 3.61
280 281 0.672401 TACGCAGTGCTAACCTTGGC 60.672 55.000 14.33 0.00 45.73 4.52
281 282 1.672356 CGCAGTGCTAACCTTGGCT 60.672 57.895 14.33 0.00 35.49 4.75
282 283 0.391130 CGCAGTGCTAACCTTGGCTA 60.391 55.000 14.33 0.00 35.49 3.93
283 284 1.373570 GCAGTGCTAACCTTGGCTAG 58.626 55.000 8.18 0.00 35.49 3.42
284 285 1.339151 GCAGTGCTAACCTTGGCTAGT 60.339 52.381 8.18 0.00 35.49 2.57
285 286 2.876079 GCAGTGCTAACCTTGGCTAGTT 60.876 50.000 8.18 0.00 35.49 2.24
286 287 3.003480 CAGTGCTAACCTTGGCTAGTTC 58.997 50.000 0.00 0.00 35.49 3.01
287 288 2.000447 GTGCTAACCTTGGCTAGTTCG 59.000 52.381 0.00 0.00 35.49 3.95
288 289 1.621814 TGCTAACCTTGGCTAGTTCGT 59.378 47.619 0.00 0.00 35.49 3.85
289 290 2.269172 GCTAACCTTGGCTAGTTCGTC 58.731 52.381 0.00 0.00 0.00 4.20
290 291 2.353406 GCTAACCTTGGCTAGTTCGTCA 60.353 50.000 0.00 0.00 0.00 4.35
291 292 2.165319 AACCTTGGCTAGTTCGTCAC 57.835 50.000 0.00 0.00 0.00 3.67
292 293 1.339097 ACCTTGGCTAGTTCGTCACT 58.661 50.000 0.00 0.00 39.87 3.41
293 294 1.692519 ACCTTGGCTAGTTCGTCACTT 59.307 47.619 0.00 0.00 36.88 3.16
294 295 2.069273 CCTTGGCTAGTTCGTCACTTG 58.931 52.381 0.00 0.00 36.88 3.16
295 296 2.069273 CTTGGCTAGTTCGTCACTTGG 58.931 52.381 0.00 0.00 36.88 3.61
296 297 0.320374 TGGCTAGTTCGTCACTTGGG 59.680 55.000 0.00 0.00 36.88 4.12
297 298 0.606604 GGCTAGTTCGTCACTTGGGA 59.393 55.000 0.00 0.00 36.88 4.37
298 299 1.001633 GGCTAGTTCGTCACTTGGGAA 59.998 52.381 0.00 0.00 36.88 3.97
299 300 2.354805 GGCTAGTTCGTCACTTGGGAAT 60.355 50.000 0.00 0.00 36.88 3.01
300 301 3.335579 GCTAGTTCGTCACTTGGGAATT 58.664 45.455 0.00 0.00 36.88 2.17
301 302 3.125316 GCTAGTTCGTCACTTGGGAATTG 59.875 47.826 0.00 0.00 36.88 2.32
302 303 3.485463 AGTTCGTCACTTGGGAATTGA 57.515 42.857 0.00 0.00 27.32 2.57
303 304 4.021102 AGTTCGTCACTTGGGAATTGAT 57.979 40.909 0.00 0.00 27.32 2.57
304 305 3.753272 AGTTCGTCACTTGGGAATTGATG 59.247 43.478 0.00 0.00 27.32 3.07
305 306 3.694043 TCGTCACTTGGGAATTGATGA 57.306 42.857 0.00 0.00 34.81 2.92
306 307 3.599343 TCGTCACTTGGGAATTGATGAG 58.401 45.455 0.00 0.00 33.00 2.90
307 308 3.007940 TCGTCACTTGGGAATTGATGAGT 59.992 43.478 0.00 0.00 33.00 3.41
308 309 4.221924 TCGTCACTTGGGAATTGATGAGTA 59.778 41.667 0.00 0.00 33.00 2.59
309 310 5.104941 TCGTCACTTGGGAATTGATGAGTAT 60.105 40.000 0.00 0.00 33.00 2.12
310 311 6.097696 TCGTCACTTGGGAATTGATGAGTATA 59.902 38.462 0.00 0.00 33.00 1.47
311 312 6.422100 CGTCACTTGGGAATTGATGAGTATAG 59.578 42.308 0.00 0.00 30.98 1.31
312 313 6.203723 GTCACTTGGGAATTGATGAGTATAGC 59.796 42.308 0.00 0.00 0.00 2.97
313 314 5.471456 CACTTGGGAATTGATGAGTATAGCC 59.529 44.000 0.00 0.00 0.00 3.93
314 315 5.132648 ACTTGGGAATTGATGAGTATAGCCA 59.867 40.000 0.00 0.00 0.00 4.75
315 316 4.973168 TGGGAATTGATGAGTATAGCCAC 58.027 43.478 0.00 0.00 0.00 5.01
316 317 4.660303 TGGGAATTGATGAGTATAGCCACT 59.340 41.667 0.00 0.00 0.00 4.00
317 318 5.132648 TGGGAATTGATGAGTATAGCCACTT 59.867 40.000 0.00 0.00 0.00 3.16
318 319 5.703130 GGGAATTGATGAGTATAGCCACTTC 59.297 44.000 0.00 0.00 0.00 3.01
319 320 6.291377 GGAATTGATGAGTATAGCCACTTCA 58.709 40.000 0.00 0.00 0.00 3.02
320 321 6.426328 GGAATTGATGAGTATAGCCACTTCAG 59.574 42.308 0.00 0.00 0.00 3.02
321 322 4.944619 TGATGAGTATAGCCACTTCAGG 57.055 45.455 0.00 0.00 0.00 3.86
322 323 4.546674 TGATGAGTATAGCCACTTCAGGA 58.453 43.478 0.00 0.00 0.00 3.86
323 324 5.150715 TGATGAGTATAGCCACTTCAGGAT 58.849 41.667 0.00 0.00 0.00 3.24
324 325 5.244851 TGATGAGTATAGCCACTTCAGGATC 59.755 44.000 0.00 0.00 0.00 3.36
325 326 3.570125 TGAGTATAGCCACTTCAGGATCG 59.430 47.826 0.00 0.00 0.00 3.69
326 327 2.297597 AGTATAGCCACTTCAGGATCGC 59.702 50.000 0.00 0.00 0.00 4.58
327 328 1.418334 ATAGCCACTTCAGGATCGCT 58.582 50.000 0.00 0.00 0.00 4.93
328 329 0.747255 TAGCCACTTCAGGATCGCTC 59.253 55.000 0.00 0.00 0.00 5.03
329 330 1.880340 GCCACTTCAGGATCGCTCG 60.880 63.158 0.00 0.00 0.00 5.03
330 331 1.513158 CCACTTCAGGATCGCTCGT 59.487 57.895 0.00 0.00 0.00 4.18
331 332 0.526524 CCACTTCAGGATCGCTCGTC 60.527 60.000 0.00 0.00 0.00 4.20
332 333 0.171231 CACTTCAGGATCGCTCGTCA 59.829 55.000 0.00 0.00 0.00 4.35
333 334 0.888619 ACTTCAGGATCGCTCGTCAA 59.111 50.000 0.00 0.00 0.00 3.18
334 335 1.272781 CTTCAGGATCGCTCGTCAAC 58.727 55.000 0.00 0.00 0.00 3.18
335 336 0.888619 TTCAGGATCGCTCGTCAACT 59.111 50.000 0.00 0.00 0.00 3.16
336 337 0.171231 TCAGGATCGCTCGTCAACTG 59.829 55.000 0.00 0.00 0.00 3.16
337 338 0.109086 CAGGATCGCTCGTCAACTGT 60.109 55.000 0.00 0.00 0.00 3.55
338 339 0.171455 AGGATCGCTCGTCAACTGTC 59.829 55.000 0.00 0.00 0.00 3.51
339 340 1.134530 GGATCGCTCGTCAACTGTCG 61.135 60.000 0.00 0.00 0.00 4.35
340 341 0.179197 GATCGCTCGTCAACTGTCGA 60.179 55.000 0.00 0.00 34.74 4.20
343 344 4.154613 CTCGTCAACTGTCGAGGC 57.845 61.111 15.61 0.00 45.28 4.70
344 345 1.285950 CTCGTCAACTGTCGAGGCA 59.714 57.895 15.61 0.00 45.28 4.75
345 346 1.004277 CTCGTCAACTGTCGAGGCAC 61.004 60.000 15.61 0.00 45.28 5.01
346 347 1.299850 CGTCAACTGTCGAGGCACA 60.300 57.895 0.00 0.00 0.00 4.57
347 348 0.874175 CGTCAACTGTCGAGGCACAA 60.874 55.000 0.00 0.00 0.00 3.33
348 349 0.861837 GTCAACTGTCGAGGCACAAG 59.138 55.000 0.00 0.00 0.00 3.16
349 350 0.464036 TCAACTGTCGAGGCACAAGT 59.536 50.000 0.00 0.00 0.00 3.16
350 351 0.583438 CAACTGTCGAGGCACAAGTG 59.417 55.000 0.00 0.00 0.00 3.16
351 352 0.178068 AACTGTCGAGGCACAAGTGT 59.822 50.000 1.79 0.00 0.00 3.55
352 353 0.249489 ACTGTCGAGGCACAAGTGTC 60.249 55.000 0.00 0.00 34.93 3.67
360 361 2.775890 AGGCACAAGTGTCTCTGAATG 58.224 47.619 0.67 0.00 42.78 2.67
361 362 2.369860 AGGCACAAGTGTCTCTGAATGA 59.630 45.455 0.67 0.00 42.78 2.57
362 363 3.008813 AGGCACAAGTGTCTCTGAATGAT 59.991 43.478 0.67 0.00 42.78 2.45
363 364 3.755378 GGCACAAGTGTCTCTGAATGATT 59.245 43.478 1.79 0.00 31.34 2.57
364 365 4.142730 GGCACAAGTGTCTCTGAATGATTC 60.143 45.833 0.00 0.00 31.34 2.52
365 366 4.453478 GCACAAGTGTCTCTGAATGATTCA 59.547 41.667 7.73 7.73 38.17 2.57
366 367 5.049198 GCACAAGTGTCTCTGAATGATTCAA 60.049 40.000 9.39 0.36 39.58 2.69
367 368 6.349115 GCACAAGTGTCTCTGAATGATTCAAT 60.349 38.462 9.39 0.00 39.58 2.57
368 369 7.242079 CACAAGTGTCTCTGAATGATTCAATC 58.758 38.462 9.39 0.00 39.58 2.67
369 370 7.119407 CACAAGTGTCTCTGAATGATTCAATCT 59.881 37.037 9.39 0.00 39.58 2.40
370 371 7.664731 ACAAGTGTCTCTGAATGATTCAATCTT 59.335 33.333 9.39 5.24 39.58 2.40
371 372 9.159364 CAAGTGTCTCTGAATGATTCAATCTTA 57.841 33.333 9.39 0.00 39.58 2.10
372 373 9.730705 AAGTGTCTCTGAATGATTCAATCTTAA 57.269 29.630 9.39 0.00 39.58 1.85
373 374 9.902684 AGTGTCTCTGAATGATTCAATCTTAAT 57.097 29.630 9.39 0.00 39.58 1.40
375 376 9.334947 TGTCTCTGAATGATTCAATCTTAATCC 57.665 33.333 9.39 0.00 39.58 3.01
376 377 9.334947 GTCTCTGAATGATTCAATCTTAATCCA 57.665 33.333 9.39 0.00 39.58 3.41
377 378 9.910267 TCTCTGAATGATTCAATCTTAATCCAA 57.090 29.630 9.39 0.00 39.58 3.53
385 386 8.192774 TGATTCAATCTTAATCCAATCACAAGC 58.807 33.333 0.00 0.00 33.28 4.01
386 387 6.455360 TCAATCTTAATCCAATCACAAGCC 57.545 37.500 0.00 0.00 0.00 4.35
387 388 5.951148 TCAATCTTAATCCAATCACAAGCCA 59.049 36.000 0.00 0.00 0.00 4.75
388 389 6.436847 TCAATCTTAATCCAATCACAAGCCAA 59.563 34.615 0.00 0.00 0.00 4.52
389 390 6.855763 ATCTTAATCCAATCACAAGCCAAA 57.144 33.333 0.00 0.00 0.00 3.28
390 391 6.855763 TCTTAATCCAATCACAAGCCAAAT 57.144 33.333 0.00 0.00 0.00 2.32
391 392 7.243604 TCTTAATCCAATCACAAGCCAAATT 57.756 32.000 0.00 0.00 0.00 1.82
392 393 7.322664 TCTTAATCCAATCACAAGCCAAATTC 58.677 34.615 0.00 0.00 0.00 2.17
393 394 3.574284 TCCAATCACAAGCCAAATTCG 57.426 42.857 0.00 0.00 0.00 3.34
394 395 2.230992 TCCAATCACAAGCCAAATTCGG 59.769 45.455 0.00 0.00 0.00 4.30
403 404 1.815866 CCAAATTCGGCCACCATCC 59.184 57.895 2.24 0.00 0.00 3.51
404 405 0.969917 CCAAATTCGGCCACCATCCA 60.970 55.000 2.24 0.00 0.00 3.41
405 406 0.894141 CAAATTCGGCCACCATCCAA 59.106 50.000 2.24 0.00 0.00 3.53
406 407 1.274728 CAAATTCGGCCACCATCCAAA 59.725 47.619 2.24 0.00 0.00 3.28
407 408 0.894835 AATTCGGCCACCATCCAAAC 59.105 50.000 2.24 0.00 0.00 2.93
408 409 0.251564 ATTCGGCCACCATCCAAACA 60.252 50.000 2.24 0.00 0.00 2.83
409 410 1.175983 TTCGGCCACCATCCAAACAC 61.176 55.000 2.24 0.00 0.00 3.32
410 411 1.900981 CGGCCACCATCCAAACACA 60.901 57.895 2.24 0.00 0.00 3.72
411 412 1.665442 GGCCACCATCCAAACACAC 59.335 57.895 0.00 0.00 0.00 3.82
412 413 1.665442 GCCACCATCCAAACACACC 59.335 57.895 0.00 0.00 0.00 4.16
413 414 1.815817 GCCACCATCCAAACACACCC 61.816 60.000 0.00 0.00 0.00 4.61
414 415 0.468958 CCACCATCCAAACACACCCA 60.469 55.000 0.00 0.00 0.00 4.51
415 416 1.631405 CACCATCCAAACACACCCAT 58.369 50.000 0.00 0.00 0.00 4.00
416 417 1.273048 CACCATCCAAACACACCCATG 59.727 52.381 0.00 0.00 0.00 3.66
417 418 0.896923 CCATCCAAACACACCCATGG 59.103 55.000 4.14 4.14 0.00 3.66
418 419 1.631405 CATCCAAACACACCCATGGT 58.369 50.000 11.73 0.00 35.62 3.55
419 420 1.545582 CATCCAAACACACCCATGGTC 59.454 52.381 11.73 0.00 31.02 4.02
420 421 0.850100 TCCAAACACACCCATGGTCT 59.150 50.000 11.73 0.00 31.02 3.85
421 422 1.216678 TCCAAACACACCCATGGTCTT 59.783 47.619 11.73 0.00 31.02 3.01
422 423 1.613437 CCAAACACACCCATGGTCTTC 59.387 52.381 11.73 0.00 31.02 2.87
423 424 1.266718 CAAACACACCCATGGTCTTCG 59.733 52.381 11.73 0.00 31.02 3.79
424 425 0.250727 AACACACCCATGGTCTTCGG 60.251 55.000 11.73 0.00 31.02 4.30
425 426 1.125093 ACACACCCATGGTCTTCGGA 61.125 55.000 11.73 0.00 31.02 4.55
426 427 0.253044 CACACCCATGGTCTTCGGAT 59.747 55.000 11.73 0.00 31.02 4.18
427 428 0.991920 ACACCCATGGTCTTCGGATT 59.008 50.000 11.73 0.00 31.02 3.01
428 429 1.065418 ACACCCATGGTCTTCGGATTC 60.065 52.381 11.73 0.00 31.02 2.52
429 430 1.065491 CACCCATGGTCTTCGGATTCA 60.065 52.381 11.73 0.00 31.02 2.57
430 431 1.210478 ACCCATGGTCTTCGGATTCAG 59.790 52.381 11.73 0.00 0.00 3.02
431 432 1.303309 CCATGGTCTTCGGATTCAGC 58.697 55.000 2.57 0.00 0.00 4.26
432 433 1.134280 CCATGGTCTTCGGATTCAGCT 60.134 52.381 2.57 0.00 0.00 4.24
433 434 2.636830 CATGGTCTTCGGATTCAGCTT 58.363 47.619 0.00 0.00 0.00 3.74
434 435 2.099141 TGGTCTTCGGATTCAGCTTG 57.901 50.000 0.00 0.00 0.00 4.01
435 436 0.729690 GGTCTTCGGATTCAGCTTGC 59.270 55.000 0.00 0.00 0.00 4.01
436 437 0.729690 GTCTTCGGATTCAGCTTGCC 59.270 55.000 0.00 0.00 0.00 4.52
437 438 0.615331 TCTTCGGATTCAGCTTGCCT 59.385 50.000 0.00 0.00 0.00 4.75
438 439 0.731417 CTTCGGATTCAGCTTGCCTG 59.269 55.000 0.00 0.00 43.17 4.85
439 440 1.308069 TTCGGATTCAGCTTGCCTGC 61.308 55.000 0.00 0.00 41.50 4.85
440 441 1.748122 CGGATTCAGCTTGCCTGCT 60.748 57.895 0.00 0.00 45.18 4.24
441 442 1.310933 CGGATTCAGCTTGCCTGCTT 61.311 55.000 0.00 0.00 41.98 3.91
442 443 0.455005 GGATTCAGCTTGCCTGCTTC 59.545 55.000 0.00 0.00 41.98 3.86
443 444 1.461559 GATTCAGCTTGCCTGCTTCT 58.538 50.000 0.00 0.00 41.98 2.85
444 445 1.817447 GATTCAGCTTGCCTGCTTCTT 59.183 47.619 0.00 0.00 41.98 2.52
445 446 1.242076 TTCAGCTTGCCTGCTTCTTC 58.758 50.000 0.00 0.00 41.98 2.87
446 447 0.607489 TCAGCTTGCCTGCTTCTTCC 60.607 55.000 0.00 0.00 41.98 3.46
447 448 1.303970 AGCTTGCCTGCTTCTTCCC 60.304 57.895 0.00 0.00 40.93 3.97
448 449 2.346541 GCTTGCCTGCTTCTTCCCC 61.347 63.158 0.00 0.00 0.00 4.81
449 450 1.075482 CTTGCCTGCTTCTTCCCCA 59.925 57.895 0.00 0.00 0.00 4.96
450 451 0.324091 CTTGCCTGCTTCTTCCCCAT 60.324 55.000 0.00 0.00 0.00 4.00
451 452 0.998928 TTGCCTGCTTCTTCCCCATA 59.001 50.000 0.00 0.00 0.00 2.74
452 453 0.255890 TGCCTGCTTCTTCCCCATAC 59.744 55.000 0.00 0.00 0.00 2.39
453 454 0.548510 GCCTGCTTCTTCCCCATACT 59.451 55.000 0.00 0.00 0.00 2.12
454 455 1.064389 GCCTGCTTCTTCCCCATACTT 60.064 52.381 0.00 0.00 0.00 2.24
455 456 2.621668 GCCTGCTTCTTCCCCATACTTT 60.622 50.000 0.00 0.00 0.00 2.66
456 457 3.282885 CCTGCTTCTTCCCCATACTTTC 58.717 50.000 0.00 0.00 0.00 2.62
457 458 3.308402 CCTGCTTCTTCCCCATACTTTCA 60.308 47.826 0.00 0.00 0.00 2.69
458 459 4.530875 CTGCTTCTTCCCCATACTTTCAT 58.469 43.478 0.00 0.00 0.00 2.57
459 460 4.526970 TGCTTCTTCCCCATACTTTCATC 58.473 43.478 0.00 0.00 0.00 2.92
460 461 3.885901 GCTTCTTCCCCATACTTTCATCC 59.114 47.826 0.00 0.00 0.00 3.51
461 462 3.838244 TCTTCCCCATACTTTCATCCG 57.162 47.619 0.00 0.00 0.00 4.18
462 463 3.112263 TCTTCCCCATACTTTCATCCGT 58.888 45.455 0.00 0.00 0.00 4.69
463 464 3.118408 TCTTCCCCATACTTTCATCCGTG 60.118 47.826 0.00 0.00 0.00 4.94
464 465 1.134220 TCCCCATACTTTCATCCGTGC 60.134 52.381 0.00 0.00 0.00 5.34
465 466 1.134098 CCCCATACTTTCATCCGTGCT 60.134 52.381 0.00 0.00 0.00 4.40
466 467 2.643551 CCCATACTTTCATCCGTGCTT 58.356 47.619 0.00 0.00 0.00 3.91
467 468 2.614057 CCCATACTTTCATCCGTGCTTC 59.386 50.000 0.00 0.00 0.00 3.86
468 469 2.614057 CCATACTTTCATCCGTGCTTCC 59.386 50.000 0.00 0.00 0.00 3.46
469 470 3.270027 CATACTTTCATCCGTGCTTCCA 58.730 45.455 0.00 0.00 0.00 3.53
470 471 1.523758 ACTTTCATCCGTGCTTCCAC 58.476 50.000 0.00 0.00 38.62 4.02
471 472 1.072331 ACTTTCATCCGTGCTTCCACT 59.928 47.619 0.00 0.00 39.86 4.00
472 473 2.154462 CTTTCATCCGTGCTTCCACTT 58.846 47.619 0.00 0.00 39.86 3.16
473 474 1.808411 TTCATCCGTGCTTCCACTTC 58.192 50.000 0.00 0.00 39.86 3.01
474 475 0.684535 TCATCCGTGCTTCCACTTCA 59.315 50.000 0.00 0.00 39.86 3.02
475 476 1.278985 TCATCCGTGCTTCCACTTCAT 59.721 47.619 0.00 0.00 39.86 2.57
476 477 1.667724 CATCCGTGCTTCCACTTCATC 59.332 52.381 0.00 0.00 39.86 2.92
477 478 0.036388 TCCGTGCTTCCACTTCATCC 60.036 55.000 0.00 0.00 39.86 3.51
478 479 0.036010 CCGTGCTTCCACTTCATCCT 60.036 55.000 0.00 0.00 39.86 3.24
479 480 1.207089 CCGTGCTTCCACTTCATCCTA 59.793 52.381 0.00 0.00 39.86 2.94
480 481 2.271800 CGTGCTTCCACTTCATCCTAC 58.728 52.381 0.00 0.00 39.86 3.18
481 482 2.353704 CGTGCTTCCACTTCATCCTACA 60.354 50.000 0.00 0.00 39.86 2.74
482 483 3.265791 GTGCTTCCACTTCATCCTACAG 58.734 50.000 0.00 0.00 38.93 2.74
483 484 2.906389 TGCTTCCACTTCATCCTACAGT 59.094 45.455 0.00 0.00 0.00 3.55
484 485 3.327757 TGCTTCCACTTCATCCTACAGTT 59.672 43.478 0.00 0.00 0.00 3.16
485 486 4.530553 TGCTTCCACTTCATCCTACAGTTA 59.469 41.667 0.00 0.00 0.00 2.24
486 487 5.189736 TGCTTCCACTTCATCCTACAGTTAT 59.810 40.000 0.00 0.00 0.00 1.89
487 488 5.755861 GCTTCCACTTCATCCTACAGTTATC 59.244 44.000 0.00 0.00 0.00 1.75
488 489 6.407525 GCTTCCACTTCATCCTACAGTTATCT 60.408 42.308 0.00 0.00 0.00 1.98
489 490 7.496346 TTCCACTTCATCCTACAGTTATCTT 57.504 36.000 0.00 0.00 0.00 2.40
490 491 7.496346 TCCACTTCATCCTACAGTTATCTTT 57.504 36.000 0.00 0.00 0.00 2.52
491 492 7.918076 TCCACTTCATCCTACAGTTATCTTTT 58.082 34.615 0.00 0.00 0.00 2.27
492 493 8.383175 TCCACTTCATCCTACAGTTATCTTTTT 58.617 33.333 0.00 0.00 0.00 1.94
522 523 9.667607 TTCTCTTTCTAATCTAATCATCCCTCT 57.332 33.333 0.00 0.00 0.00 3.69
523 524 9.087871 TCTCTTTCTAATCTAATCATCCCTCTG 57.912 37.037 0.00 0.00 0.00 3.35
524 525 9.087871 CTCTTTCTAATCTAATCATCCCTCTGA 57.912 37.037 0.00 0.00 0.00 3.27
525 526 9.612879 TCTTTCTAATCTAATCATCCCTCTGAT 57.387 33.333 0.00 0.00 37.47 2.90
532 533 9.804977 AATCTAATCATCCCTCTGATTTTAAGG 57.195 33.333 4.79 0.00 41.89 2.69
538 539 3.837355 CCCTCTGATTTTAAGGGGATGG 58.163 50.000 0.00 0.00 45.18 3.51
539 540 3.437052 CCCTCTGATTTTAAGGGGATGGG 60.437 52.174 0.00 0.00 45.18 4.00
540 541 3.437052 CCTCTGATTTTAAGGGGATGGGG 60.437 52.174 0.00 0.00 37.50 4.96
541 542 3.205282 CTCTGATTTTAAGGGGATGGGGT 59.795 47.826 0.00 0.00 0.00 4.95
542 543 3.204382 TCTGATTTTAAGGGGATGGGGTC 59.796 47.826 0.00 0.00 0.00 4.46
543 544 2.929724 TGATTTTAAGGGGATGGGGTCA 59.070 45.455 0.00 0.00 0.00 4.02
544 545 3.052944 TGATTTTAAGGGGATGGGGTCAG 60.053 47.826 0.00 0.00 0.00 3.51
545 546 1.304891 TTTAAGGGGATGGGGTCAGG 58.695 55.000 0.00 0.00 0.00 3.86
546 547 1.286305 TTAAGGGGATGGGGTCAGGC 61.286 60.000 0.00 0.00 0.00 4.85
547 548 2.208562 TAAGGGGATGGGGTCAGGCT 62.209 60.000 0.00 0.00 0.00 4.58
548 549 3.023735 GGGGATGGGGTCAGGCTT 61.024 66.667 0.00 0.00 0.00 4.35
549 550 2.626467 GGGGATGGGGTCAGGCTTT 61.626 63.158 0.00 0.00 0.00 3.51
550 551 1.286305 GGGGATGGGGTCAGGCTTTA 61.286 60.000 0.00 0.00 0.00 1.85
551 552 0.853530 GGGATGGGGTCAGGCTTTAT 59.146 55.000 0.00 0.00 0.00 1.40
552 553 1.217942 GGGATGGGGTCAGGCTTTATT 59.782 52.381 0.00 0.00 0.00 1.40
553 554 2.359249 GGGATGGGGTCAGGCTTTATTT 60.359 50.000 0.00 0.00 0.00 1.40
554 555 3.374764 GGATGGGGTCAGGCTTTATTTT 58.625 45.455 0.00 0.00 0.00 1.82
555 556 3.132824 GGATGGGGTCAGGCTTTATTTTG 59.867 47.826 0.00 0.00 0.00 2.44
556 557 3.252554 TGGGGTCAGGCTTTATTTTGT 57.747 42.857 0.00 0.00 0.00 2.83
557 558 3.582164 TGGGGTCAGGCTTTATTTTGTT 58.418 40.909 0.00 0.00 0.00 2.83
558 559 3.970640 TGGGGTCAGGCTTTATTTTGTTT 59.029 39.130 0.00 0.00 0.00 2.83
559 560 4.410555 TGGGGTCAGGCTTTATTTTGTTTT 59.589 37.500 0.00 0.00 0.00 2.43
560 561 5.602978 TGGGGTCAGGCTTTATTTTGTTTTA 59.397 36.000 0.00 0.00 0.00 1.52
561 562 6.099845 TGGGGTCAGGCTTTATTTTGTTTTAA 59.900 34.615 0.00 0.00 0.00 1.52
562 563 7.165485 GGGGTCAGGCTTTATTTTGTTTTAAT 58.835 34.615 0.00 0.00 0.00 1.40
563 564 7.333423 GGGGTCAGGCTTTATTTTGTTTTAATC 59.667 37.037 0.00 0.00 0.00 1.75
564 565 7.875554 GGGTCAGGCTTTATTTTGTTTTAATCA 59.124 33.333 0.00 0.00 0.00 2.57
565 566 9.267084 GGTCAGGCTTTATTTTGTTTTAATCAA 57.733 29.630 0.00 0.00 0.00 2.57
576 577 8.498054 TTTTGTTTTAATCAAATCAAGCCACA 57.502 26.923 2.57 0.00 35.70 4.17
577 578 8.674263 TTTGTTTTAATCAAATCAAGCCACAT 57.326 26.923 0.00 0.00 35.70 3.21
578 579 9.770097 TTTGTTTTAATCAAATCAAGCCACATA 57.230 25.926 0.00 0.00 35.70 2.29
579 580 8.755696 TGTTTTAATCAAATCAAGCCACATAC 57.244 30.769 0.00 0.00 0.00 2.39
580 581 7.540400 TGTTTTAATCAAATCAAGCCACATACG 59.460 33.333 0.00 0.00 0.00 3.06
581 582 3.698029 ATCAAATCAAGCCACATACGC 57.302 42.857 0.00 0.00 0.00 4.42
582 583 1.396648 TCAAATCAAGCCACATACGCG 59.603 47.619 3.53 3.53 0.00 6.01
583 584 0.732571 AAATCAAGCCACATACGCGG 59.267 50.000 12.47 0.00 0.00 6.46
584 585 1.095228 AATCAAGCCACATACGCGGG 61.095 55.000 12.47 1.71 0.00 6.13
585 586 1.966901 ATCAAGCCACATACGCGGGA 61.967 55.000 12.47 0.00 0.00 5.14
586 587 2.173669 CAAGCCACATACGCGGGAG 61.174 63.158 12.47 0.99 0.00 4.30
617 618 4.704833 GCCACGGAGAGCAGGCAA 62.705 66.667 0.00 0.00 46.26 4.52
618 619 2.435586 CCACGGAGAGCAGGCAAG 60.436 66.667 0.00 0.00 0.00 4.01
619 620 2.345244 CACGGAGAGCAGGCAAGT 59.655 61.111 0.00 0.00 0.00 3.16
620 621 1.739562 CACGGAGAGCAGGCAAGTC 60.740 63.158 0.00 0.00 0.00 3.01
621 622 1.910772 ACGGAGAGCAGGCAAGTCT 60.911 57.895 0.00 0.00 0.00 3.24
622 623 1.153667 CGGAGAGCAGGCAAGTCTC 60.154 63.158 0.00 0.00 36.73 3.36
623 624 1.153667 GGAGAGCAGGCAAGTCTCG 60.154 63.158 0.00 0.00 38.09 4.04
624 625 1.589113 GAGAGCAGGCAAGTCTCGT 59.411 57.895 0.00 0.00 32.42 4.18
625 626 0.811915 GAGAGCAGGCAAGTCTCGTA 59.188 55.000 0.00 0.00 32.42 3.43
673 674 3.891366 CTGATTTGGCCCTATAACCTTGG 59.109 47.826 0.00 0.00 0.00 3.61
674 675 2.153034 TTTGGCCCTATAACCTTGGC 57.847 50.000 0.00 0.00 43.26 4.52
675 676 1.003646 TTGGCCCTATAACCTTGGCA 58.996 50.000 0.00 0.00 45.83 4.92
676 677 1.231018 TGGCCCTATAACCTTGGCAT 58.769 50.000 0.00 0.00 45.83 4.40
677 678 1.144913 TGGCCCTATAACCTTGGCATC 59.855 52.381 0.00 0.00 45.83 3.91
686 687 0.322546 ACCTTGGCATCCGAAGAACC 60.323 55.000 0.00 0.00 0.00 3.62
697 698 0.456312 CGAAGAACCGAACTCGAGGG 60.456 60.000 18.41 11.03 43.02 4.30
724 725 5.292101 CGTCACTGAGAAAATGGGATAACTC 59.708 44.000 0.00 0.00 0.00 3.01
813 814 2.183555 CCCCGACGCTACAACTCC 59.816 66.667 0.00 0.00 0.00 3.85
819 820 0.173708 GACGCTACAACTCCCCAGAG 59.826 60.000 0.00 0.00 46.36 3.35
820 821 1.258445 ACGCTACAACTCCCCAGAGG 61.258 60.000 0.00 0.00 45.11 3.69
907 908 2.424705 TTTTCCTACCGTCGCGCACT 62.425 55.000 8.75 0.00 0.00 4.40
914 915 1.484356 ACCGTCGCGCACTATAAATC 58.516 50.000 8.75 0.00 0.00 2.17
937 938 3.053896 GCCACCCGGTACAAGCAC 61.054 66.667 0.00 0.00 33.28 4.40
976 977 2.352422 GCAGCCACCCATCACTCA 59.648 61.111 0.00 0.00 0.00 3.41
992 993 1.002888 ACTCACTTCAGGCATGTCAGG 59.997 52.381 0.00 0.00 0.00 3.86
1011 1012 1.620739 GCCTCCAGATGGTGCTCAGA 61.621 60.000 0.00 0.00 36.34 3.27
1015 1016 0.177604 CCAGATGGTGCTCAGAGACC 59.822 60.000 0.00 6.84 0.00 3.85
1022 1023 2.435059 GCTCAGAGACCCAACGGC 60.435 66.667 0.00 0.00 0.00 5.68
1071 1072 4.008933 GCCATCGCCGCCTCCTAT 62.009 66.667 0.00 0.00 0.00 2.57
1311 1315 4.435436 TCGCCGGTGCTACAGCTG 62.435 66.667 13.48 13.48 42.66 4.24
1476 1480 2.701780 CCTCACCCTCGTCGACCTG 61.702 68.421 10.58 2.58 0.00 4.00
1488 1492 4.408821 GACCTGCCCGGCATCACA 62.409 66.667 13.86 0.00 38.13 3.58
1515 1519 1.072505 GGTCAAAGGACAGCCCGAA 59.927 57.895 0.00 0.00 46.17 4.30
1533 1537 3.813724 CCGAAGACATCTACGACCAGATA 59.186 47.826 0.00 0.00 33.41 1.98
1618 1622 4.047059 TCGACTTCCCGACGTGCC 62.047 66.667 0.00 0.00 33.14 5.01
1734 1738 0.609957 AGGTCACCATGGACGACGTA 60.610 55.000 21.47 0.00 38.70 3.57
1746 1750 1.802365 GACGACGTAAACATTGGCCTT 59.198 47.619 3.32 0.00 0.00 4.35
1833 1837 1.136828 AGCTGTTCAAGTACCACCCA 58.863 50.000 0.00 0.00 0.00 4.51
1929 1933 3.329889 ATCGCCAAGTGCCTCCCA 61.330 61.111 0.00 0.00 36.24 4.37
1989 2001 0.175760 GCACCGAGCTCAACCAGATA 59.824 55.000 15.40 0.00 41.15 1.98
2005 2017 2.868583 CAGATACCGCCTGATCTTGTTG 59.131 50.000 0.00 0.00 33.65 3.33
2067 2079 0.548682 AGGTGTGCTCTTCCCTGGAT 60.549 55.000 0.00 0.00 0.00 3.41
2068 2080 0.329596 GGTGTGCTCTTCCCTGGATT 59.670 55.000 0.00 0.00 0.00 3.01
2111 2123 3.099905 TCGATGAGTTCCCTGATGACTT 58.900 45.455 0.00 0.00 0.00 3.01
2112 2124 3.515502 TCGATGAGTTCCCTGATGACTTT 59.484 43.478 0.00 0.00 0.00 2.66
2293 2311 1.580845 CTTCCAGGTCTTGCGCAAGG 61.581 60.000 41.00 29.29 38.88 3.61
2370 2489 1.734655 ATGTGGAGGACTTGGTGTCT 58.265 50.000 0.00 0.00 44.74 3.41
2520 2639 0.323302 TGGTAGCTGATTTCACGGCA 59.677 50.000 0.00 0.00 43.72 5.69
2580 2699 6.180472 GGAAGGTCATGAGAAGTTTATGGAA 58.820 40.000 0.00 0.00 0.00 3.53
2682 2801 4.666253 GAGTTGGCAGGGCAGGCA 62.666 66.667 1.34 1.34 42.83 4.75
2712 2831 4.899239 GCGCGCCTGACTGCCTAT 62.899 66.667 23.24 0.00 0.00 2.57
2739 2858 1.522355 CATCGTGCTCCGGCTCATT 60.522 57.895 0.00 0.00 39.59 2.57
2839 2958 2.062777 TTGGGCAACAAGCTGGCAA 61.063 52.632 0.00 0.00 43.45 4.52
2903 3022 0.459237 CGTGAGCGCCTGAAGAAGAT 60.459 55.000 2.29 0.00 0.00 2.40
2917 3036 3.808466 AGAAGATCATCGTGCTGCTTA 57.192 42.857 0.00 0.00 0.00 3.09
2984 3103 3.380637 GCGTCAGGTGAAATCTAGGTAGA 59.619 47.826 0.00 0.00 36.65 2.59
2989 3108 4.656112 CAGGTGAAATCTAGGTAGATGGGT 59.344 45.833 0.14 0.00 41.96 4.51
2995 3114 6.211584 TGAAATCTAGGTAGATGGGTATCAGC 59.788 42.308 0.14 0.00 41.96 4.26
2998 3117 2.240279 AGGTAGATGGGTATCAGCGTC 58.760 52.381 0.00 0.00 36.78 5.19
3015 3134 1.813513 GTCTGTGATGTCCCTGGTTG 58.186 55.000 0.00 0.00 0.00 3.77
3016 3135 0.692476 TCTGTGATGTCCCTGGTTGG 59.308 55.000 0.00 0.00 0.00 3.77
3019 3138 0.609131 GTGATGTCCCTGGTTGGTGG 60.609 60.000 0.00 0.00 0.00 4.61
3020 3139 1.000896 GATGTCCCTGGTTGGTGGG 60.001 63.158 0.00 0.00 44.66 4.61
3022 3141 3.182996 GTCCCTGGTTGGTGGGGT 61.183 66.667 0.00 0.00 43.51 4.95
3023 3142 3.182263 TCCCTGGTTGGTGGGGTG 61.182 66.667 0.00 0.00 43.51 4.61
3025 3144 2.436109 CCTGGTTGGTGGGGTGAG 59.564 66.667 0.00 0.00 0.00 3.51
3026 3145 2.153401 CCTGGTTGGTGGGGTGAGA 61.153 63.158 0.00 0.00 0.00 3.27
3028 3147 1.385347 TGGTTGGTGGGGTGAGACT 60.385 57.895 0.00 0.00 0.00 3.24
3029 3148 1.073199 GGTTGGTGGGGTGAGACTG 59.927 63.158 0.00 0.00 0.00 3.51
3030 3149 1.415672 GGTTGGTGGGGTGAGACTGA 61.416 60.000 0.00 0.00 0.00 3.41
3032 3151 0.984230 TTGGTGGGGTGAGACTGATC 59.016 55.000 0.00 0.00 0.00 2.92
3033 3152 0.909610 TGGTGGGGTGAGACTGATCC 60.910 60.000 0.00 0.00 0.00 3.36
3034 3153 0.909610 GGTGGGGTGAGACTGATCCA 60.910 60.000 0.00 0.00 0.00 3.41
3035 3154 0.539051 GTGGGGTGAGACTGATCCAG 59.461 60.000 0.00 0.00 37.52 3.86
3050 3215 5.163269 ACTGATCCAGTTATGCTATGCTTCA 60.163 40.000 0.00 0.00 42.59 3.02
3070 3235 8.791675 TGCTTCAATGTTCAGTTATGTTATGAA 58.208 29.630 0.00 0.00 0.00 2.57
3071 3236 9.793252 GCTTCAATGTTCAGTTATGTTATGAAT 57.207 29.630 0.00 0.00 35.56 2.57
3113 3278 9.190858 TGTTCAGTTATGTTATGCATTTTGTTC 57.809 29.630 3.54 0.00 38.94 3.18
3118 3283 9.840427 AGTTATGTTATGCATTTTGTTCAGTAC 57.160 29.630 3.54 0.00 38.94 2.73
3142 3308 2.224597 TGGTGATGACTGATGCAGTGTT 60.225 45.455 4.60 0.00 45.44 3.32
3145 3311 4.142816 GGTGATGACTGATGCAGTGTTAAC 60.143 45.833 4.60 0.00 45.44 2.01
3172 3338 4.002982 CTGTGGTTCTATGTTAGCAAGCA 58.997 43.478 0.00 0.00 0.00 3.91
3175 3341 5.476599 TGTGGTTCTATGTTAGCAAGCAATT 59.523 36.000 0.00 0.00 30.88 2.32
3230 3396 8.283291 CCTCTCAAACTTGTTATGTTCAGTTAC 58.717 37.037 0.00 0.00 0.00 2.50
3234 3400 6.535274 AACTTGTTATGTTCAGTTACGGAC 57.465 37.500 0.00 0.00 0.00 4.79
3236 3402 3.577667 TGTTATGTTCAGTTACGGACCG 58.422 45.455 13.61 13.61 0.00 4.79
3244 3410 0.798776 AGTTACGGACCGTACTGTCG 59.201 55.000 26.03 8.88 42.13 4.35
3259 3425 2.224079 ACTGTCGTGTGCATCATGTTTC 59.776 45.455 0.00 0.00 34.87 2.78
3303 3469 2.890945 ACCTGGCATCCACAGTTTTTAC 59.109 45.455 0.00 0.00 34.16 2.01
3379 3561 2.253603 GCAAGCGAGGTTTTAAGCATG 58.746 47.619 0.00 0.00 0.00 4.06
3384 3566 2.095919 GCGAGGTTTTAAGCATGTCGTT 60.096 45.455 0.00 0.00 0.00 3.85
3395 3577 2.806244 AGCATGTCGTTACTTGAACCAC 59.194 45.455 0.00 0.00 34.21 4.16
3450 4341 4.568152 AGAAACAACTGTTGGGATTTCG 57.432 40.909 23.15 0.00 38.44 3.46
3463 4354 6.127591 TGTTGGGATTTCGTGGTTTTATATGG 60.128 38.462 0.00 0.00 0.00 2.74
3550 4449 8.034313 AGTTTATTCTCCAGCATACCTATTCA 57.966 34.615 0.00 0.00 0.00 2.57
3592 4512 4.202284 GGGTACACAACAGGAGAAAGTACA 60.202 45.833 0.00 0.00 33.82 2.90
3596 4516 5.250200 ACACAACAGGAGAAAGTACACAAA 58.750 37.500 0.00 0.00 0.00 2.83
3611 4569 5.880332 AGTACACAAACACAGTTCACTTCAT 59.120 36.000 0.00 0.00 0.00 2.57
3613 4571 6.119144 ACACAAACACAGTTCACTTCATAC 57.881 37.500 0.00 0.00 0.00 2.39
3670 4628 1.667724 GCATTGTACAGTAGGCAGCAG 59.332 52.381 0.00 0.00 0.00 4.24
3746 4704 4.130118 GTTGACCCATAGGCTGACATTAG 58.870 47.826 0.00 0.00 36.11 1.73
3770 4728 4.924305 TTGAAGAAAGCTGCACAAAGAT 57.076 36.364 1.02 0.00 26.09 2.40
3820 4784 3.152341 CCATATTGGAAAGCTGGGCTAG 58.848 50.000 0.00 0.00 40.96 3.42
3827 4791 3.271729 GGAAAGCTGGGCTAGTAGAAAC 58.728 50.000 0.00 0.00 38.25 2.78
3855 4819 3.003689 CCTTCAAATGTATCATGGCCGTC 59.996 47.826 0.00 0.00 0.00 4.79
3898 4862 1.302832 CTCCTTGTCCAGCCACCAC 60.303 63.158 0.00 0.00 0.00 4.16
3911 4875 3.991773 CAGCCACCACAAAATTTGATCAG 59.008 43.478 13.19 0.73 0.00 2.90
3917 4881 4.022068 ACCACAAAATTTGATCAGCACGAT 60.022 37.500 13.19 0.00 36.91 3.73
3959 4923 6.814954 AGATAGGTTCATTAAAGCTCCTGA 57.185 37.500 0.00 0.00 44.43 3.86
3978 4942 3.160585 CCTGGAGAACCTGGCACA 58.839 61.111 0.00 0.00 45.65 4.57
3979 4943 1.455849 CCTGGAGAACCTGGCACAA 59.544 57.895 0.00 0.00 45.65 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.369904 GCCAAAGTGAAACATTATGATACAATT 57.630 29.630 0.00 0.00 41.43 2.32
47 48 7.701924 CGCCAAAGTGAAACATTATGATACAAT 59.298 33.333 0.00 0.00 41.43 2.71
48 49 7.026562 CGCCAAAGTGAAACATTATGATACAA 58.973 34.615 0.00 0.00 41.43 2.41
49 50 6.550843 CGCCAAAGTGAAACATTATGATACA 58.449 36.000 0.00 0.00 41.43 2.29
50 51 5.455525 GCGCCAAAGTGAAACATTATGATAC 59.544 40.000 0.00 0.00 41.43 2.24
51 52 5.356751 AGCGCCAAAGTGAAACATTATGATA 59.643 36.000 2.29 0.00 41.43 2.15
52 53 4.158394 AGCGCCAAAGTGAAACATTATGAT 59.842 37.500 2.29 0.00 41.43 2.45
53 54 3.505680 AGCGCCAAAGTGAAACATTATGA 59.494 39.130 2.29 0.00 41.43 2.15
54 55 3.836949 AGCGCCAAAGTGAAACATTATG 58.163 40.909 2.29 0.00 41.43 1.90
55 56 5.835113 ATAGCGCCAAAGTGAAACATTAT 57.165 34.783 2.29 0.00 41.43 1.28
56 57 6.745159 TTATAGCGCCAAAGTGAAACATTA 57.255 33.333 2.29 0.00 41.43 1.90
57 58 5.637006 TTATAGCGCCAAAGTGAAACATT 57.363 34.783 2.29 0.00 41.43 2.71
58 59 5.637006 TTTATAGCGCCAAAGTGAAACAT 57.363 34.783 2.29 0.00 41.43 2.71
59 60 5.440234 TTTTATAGCGCCAAAGTGAAACA 57.560 34.783 2.29 0.00 41.43 2.83
60 61 5.688176 TGTTTTTATAGCGCCAAAGTGAAAC 59.312 36.000 2.29 8.01 0.00 2.78
61 62 5.833082 TGTTTTTATAGCGCCAAAGTGAAA 58.167 33.333 2.29 0.00 0.00 2.69
62 63 5.440234 TGTTTTTATAGCGCCAAAGTGAA 57.560 34.783 2.29 0.00 0.00 3.18
63 64 5.239744 TCTTGTTTTTATAGCGCCAAAGTGA 59.760 36.000 2.29 0.00 0.00 3.41
64 65 5.457140 TCTTGTTTTTATAGCGCCAAAGTG 58.543 37.500 2.29 0.00 0.00 3.16
65 66 5.699097 TCTTGTTTTTATAGCGCCAAAGT 57.301 34.783 2.29 0.00 0.00 2.66
66 67 7.753132 TGTAATCTTGTTTTTATAGCGCCAAAG 59.247 33.333 2.29 0.00 0.00 2.77
67 68 7.594714 TGTAATCTTGTTTTTATAGCGCCAAA 58.405 30.769 2.29 0.00 0.00 3.28
68 69 7.147143 TGTAATCTTGTTTTTATAGCGCCAA 57.853 32.000 2.29 0.00 0.00 4.52
69 70 6.745159 TGTAATCTTGTTTTTATAGCGCCA 57.255 33.333 2.29 0.00 0.00 5.69
70 71 8.531530 CAAATGTAATCTTGTTTTTATAGCGCC 58.468 33.333 2.29 0.00 0.00 6.53
71 72 9.284594 TCAAATGTAATCTTGTTTTTATAGCGC 57.715 29.630 0.00 0.00 0.00 5.92
108 109 9.226606 TGAAGAGAAAAATACGTCAAATACCAT 57.773 29.630 0.00 0.00 0.00 3.55
109 110 8.610248 TGAAGAGAAAAATACGTCAAATACCA 57.390 30.769 0.00 0.00 0.00 3.25
124 125 8.721478 CCGAGACTTTCAATTATGAAGAGAAAA 58.279 33.333 0.00 0.00 45.82 2.29
125 126 8.094548 TCCGAGACTTTCAATTATGAAGAGAAA 58.905 33.333 0.00 0.00 45.82 2.52
126 127 7.611770 TCCGAGACTTTCAATTATGAAGAGAA 58.388 34.615 0.00 0.00 45.82 2.87
127 128 7.170393 TCCGAGACTTTCAATTATGAAGAGA 57.830 36.000 0.00 0.00 45.82 3.10
128 129 7.547370 AGTTCCGAGACTTTCAATTATGAAGAG 59.453 37.037 0.00 0.00 45.82 2.85
129 130 7.386851 AGTTCCGAGACTTTCAATTATGAAGA 58.613 34.615 0.00 0.00 45.82 2.87
130 131 7.602517 AGTTCCGAGACTTTCAATTATGAAG 57.397 36.000 0.00 0.00 45.82 3.02
131 132 7.277981 GCTAGTTCCGAGACTTTCAATTATGAA 59.722 37.037 0.00 0.00 43.70 2.57
132 133 6.757010 GCTAGTTCCGAGACTTTCAATTATGA 59.243 38.462 0.00 0.00 0.00 2.15
133 134 6.535150 TGCTAGTTCCGAGACTTTCAATTATG 59.465 38.462 0.00 0.00 0.00 1.90
134 135 6.640518 TGCTAGTTCCGAGACTTTCAATTAT 58.359 36.000 0.00 0.00 0.00 1.28
135 136 6.032956 TGCTAGTTCCGAGACTTTCAATTA 57.967 37.500 0.00 0.00 0.00 1.40
136 137 4.894784 TGCTAGTTCCGAGACTTTCAATT 58.105 39.130 0.00 0.00 0.00 2.32
137 138 4.537135 TGCTAGTTCCGAGACTTTCAAT 57.463 40.909 0.00 0.00 0.00 2.57
138 139 4.021456 TGATGCTAGTTCCGAGACTTTCAA 60.021 41.667 0.00 0.00 0.00 2.69
139 140 3.509967 TGATGCTAGTTCCGAGACTTTCA 59.490 43.478 0.00 0.00 0.00 2.69
140 141 3.860536 GTGATGCTAGTTCCGAGACTTTC 59.139 47.826 0.00 0.00 0.00 2.62
141 142 3.258372 TGTGATGCTAGTTCCGAGACTTT 59.742 43.478 0.00 0.00 0.00 2.66
142 143 2.826128 TGTGATGCTAGTTCCGAGACTT 59.174 45.455 0.00 0.00 0.00 3.01
143 144 2.447443 TGTGATGCTAGTTCCGAGACT 58.553 47.619 0.00 0.00 0.00 3.24
144 145 2.941453 TGTGATGCTAGTTCCGAGAC 57.059 50.000 0.00 0.00 0.00 3.36
145 146 2.760650 ACATGTGATGCTAGTTCCGAGA 59.239 45.455 0.00 0.00 0.00 4.04
146 147 3.119291 GACATGTGATGCTAGTTCCGAG 58.881 50.000 1.15 0.00 0.00 4.63
147 148 2.495669 TGACATGTGATGCTAGTTCCGA 59.504 45.455 1.15 0.00 0.00 4.55
148 149 2.604914 GTGACATGTGATGCTAGTTCCG 59.395 50.000 1.15 0.00 0.00 4.30
149 150 3.599343 TGTGACATGTGATGCTAGTTCC 58.401 45.455 1.15 0.00 0.00 3.62
150 151 4.142816 GGTTGTGACATGTGATGCTAGTTC 60.143 45.833 1.15 0.00 0.00 3.01
151 152 3.753272 GGTTGTGACATGTGATGCTAGTT 59.247 43.478 1.15 0.00 0.00 2.24
152 153 3.244526 TGGTTGTGACATGTGATGCTAGT 60.245 43.478 1.15 0.00 0.00 2.57
153 154 3.337358 TGGTTGTGACATGTGATGCTAG 58.663 45.455 1.15 0.00 0.00 3.42
154 155 3.415457 TGGTTGTGACATGTGATGCTA 57.585 42.857 1.15 0.00 0.00 3.49
155 156 2.275134 TGGTTGTGACATGTGATGCT 57.725 45.000 1.15 0.00 0.00 3.79
156 157 3.367992 TTTGGTTGTGACATGTGATGC 57.632 42.857 1.15 0.00 0.00 3.91
157 158 5.185668 TCTTTTGGTTGTGACATGTGATG 57.814 39.130 1.15 0.00 0.00 3.07
158 159 5.850557 TTCTTTTGGTTGTGACATGTGAT 57.149 34.783 1.15 0.00 0.00 3.06
159 160 5.850557 ATTCTTTTGGTTGTGACATGTGA 57.149 34.783 1.15 0.00 0.00 3.58
160 161 8.592105 ATTAATTCTTTTGGTTGTGACATGTG 57.408 30.769 1.15 0.00 0.00 3.21
211 212 9.474313 ACTAATCTCTCTCAACTCTTATCTTGT 57.526 33.333 0.00 0.00 0.00 3.16
218 219 9.528489 AACTTCTACTAATCTCTCTCAACTCTT 57.472 33.333 0.00 0.00 0.00 2.85
219 220 8.956426 CAACTTCTACTAATCTCTCTCAACTCT 58.044 37.037 0.00 0.00 0.00 3.24
220 221 8.736244 ACAACTTCTACTAATCTCTCTCAACTC 58.264 37.037 0.00 0.00 0.00 3.01
221 222 8.644374 ACAACTTCTACTAATCTCTCTCAACT 57.356 34.615 0.00 0.00 0.00 3.16
239 240 9.949377 GCGTATTACTTTCTAGTTTACAACTTC 57.051 33.333 0.00 0.00 42.81 3.01
240 241 9.480053 TGCGTATTACTTTCTAGTTTACAACTT 57.520 29.630 0.00 0.00 42.81 2.66
241 242 9.136952 CTGCGTATTACTTTCTAGTTTACAACT 57.863 33.333 0.00 0.00 45.40 3.16
242 243 8.919661 ACTGCGTATTACTTTCTAGTTTACAAC 58.080 33.333 0.00 0.00 35.78 3.32
243 244 8.918658 CACTGCGTATTACTTTCTAGTTTACAA 58.081 33.333 0.00 0.00 35.78 2.41
244 245 7.062605 GCACTGCGTATTACTTTCTAGTTTACA 59.937 37.037 0.00 0.00 35.78 2.41
245 246 7.275123 AGCACTGCGTATTACTTTCTAGTTTAC 59.725 37.037 0.00 0.00 35.78 2.01
246 247 7.318141 AGCACTGCGTATTACTTTCTAGTTTA 58.682 34.615 0.00 0.00 35.78 2.01
247 248 6.164176 AGCACTGCGTATTACTTTCTAGTTT 58.836 36.000 0.00 0.00 35.78 2.66
248 249 5.721232 AGCACTGCGTATTACTTTCTAGTT 58.279 37.500 0.00 0.00 35.78 2.24
249 250 5.326200 AGCACTGCGTATTACTTTCTAGT 57.674 39.130 0.00 0.00 38.44 2.57
250 251 6.198591 GGTTAGCACTGCGTATTACTTTCTAG 59.801 42.308 0.00 0.00 0.00 2.43
251 252 6.038356 GGTTAGCACTGCGTATTACTTTCTA 58.962 40.000 0.00 0.00 0.00 2.10
252 253 4.868734 GGTTAGCACTGCGTATTACTTTCT 59.131 41.667 0.00 0.00 0.00 2.52
253 254 4.868734 AGGTTAGCACTGCGTATTACTTTC 59.131 41.667 0.00 0.00 0.00 2.62
254 255 4.828829 AGGTTAGCACTGCGTATTACTTT 58.171 39.130 0.00 0.00 0.00 2.66
255 256 4.467198 AGGTTAGCACTGCGTATTACTT 57.533 40.909 0.00 0.00 0.00 2.24
256 257 4.181578 CAAGGTTAGCACTGCGTATTACT 58.818 43.478 0.00 0.00 0.00 2.24
257 258 3.308866 CCAAGGTTAGCACTGCGTATTAC 59.691 47.826 0.00 0.00 0.00 1.89
258 259 3.527533 CCAAGGTTAGCACTGCGTATTA 58.472 45.455 0.00 0.00 0.00 0.98
259 260 2.356135 CCAAGGTTAGCACTGCGTATT 58.644 47.619 0.00 0.00 0.00 1.89
260 261 2.012051 GCCAAGGTTAGCACTGCGTAT 61.012 52.381 0.00 0.00 0.00 3.06
261 262 0.672401 GCCAAGGTTAGCACTGCGTA 60.672 55.000 0.00 0.00 0.00 4.42
262 263 1.966451 GCCAAGGTTAGCACTGCGT 60.966 57.895 0.00 0.00 0.00 5.24
263 264 0.391130 TAGCCAAGGTTAGCACTGCG 60.391 55.000 0.00 0.00 0.00 5.18
264 265 1.339151 ACTAGCCAAGGTTAGCACTGC 60.339 52.381 9.57 0.00 33.14 4.40
265 266 2.770164 ACTAGCCAAGGTTAGCACTG 57.230 50.000 9.57 0.00 33.14 3.66
266 267 2.353803 CGAACTAGCCAAGGTTAGCACT 60.354 50.000 9.57 0.00 33.14 4.40
267 268 2.000447 CGAACTAGCCAAGGTTAGCAC 59.000 52.381 9.57 4.09 33.14 4.40
268 269 1.621814 ACGAACTAGCCAAGGTTAGCA 59.378 47.619 9.57 0.00 33.14 3.49
269 270 2.269172 GACGAACTAGCCAAGGTTAGC 58.731 52.381 9.57 0.00 33.14 3.09
270 271 3.056749 AGTGACGAACTAGCCAAGGTTAG 60.057 47.826 8.26 8.26 37.36 2.34
271 272 2.895404 AGTGACGAACTAGCCAAGGTTA 59.105 45.455 0.00 0.00 37.36 2.85
272 273 1.692519 AGTGACGAACTAGCCAAGGTT 59.307 47.619 0.00 0.00 37.36 3.50
273 274 1.339097 AGTGACGAACTAGCCAAGGT 58.661 50.000 0.00 0.00 37.36 3.50
274 275 2.069273 CAAGTGACGAACTAGCCAAGG 58.931 52.381 0.00 0.00 38.56 3.61
275 276 2.069273 CCAAGTGACGAACTAGCCAAG 58.931 52.381 0.00 0.00 38.56 3.61
276 277 1.270625 CCCAAGTGACGAACTAGCCAA 60.271 52.381 0.00 0.00 38.56 4.52
277 278 0.320374 CCCAAGTGACGAACTAGCCA 59.680 55.000 0.00 0.00 38.56 4.75
278 279 0.606604 TCCCAAGTGACGAACTAGCC 59.393 55.000 0.00 0.00 38.56 3.93
279 280 2.450609 TTCCCAAGTGACGAACTAGC 57.549 50.000 0.00 0.00 38.56 3.42
280 281 4.566004 TCAATTCCCAAGTGACGAACTAG 58.434 43.478 0.00 0.00 38.56 2.57
281 282 4.610605 TCAATTCCCAAGTGACGAACTA 57.389 40.909 0.00 0.00 38.56 2.24
282 283 3.485463 TCAATTCCCAAGTGACGAACT 57.515 42.857 0.00 0.00 42.60 3.01
283 284 3.751175 TCATCAATTCCCAAGTGACGAAC 59.249 43.478 0.00 0.00 38.42 3.95
284 285 4.002982 CTCATCAATTCCCAAGTGACGAA 58.997 43.478 0.00 0.00 38.42 3.85
285 286 3.007940 ACTCATCAATTCCCAAGTGACGA 59.992 43.478 0.00 0.00 38.42 4.20
286 287 3.338249 ACTCATCAATTCCCAAGTGACG 58.662 45.455 0.00 0.00 38.42 4.35
287 288 6.203723 GCTATACTCATCAATTCCCAAGTGAC 59.796 42.308 0.00 0.00 38.42 3.67
288 289 6.291377 GCTATACTCATCAATTCCCAAGTGA 58.709 40.000 0.00 0.00 40.05 3.41
289 290 5.471456 GGCTATACTCATCAATTCCCAAGTG 59.529 44.000 0.00 0.00 0.00 3.16
290 291 5.132648 TGGCTATACTCATCAATTCCCAAGT 59.867 40.000 0.00 0.00 0.00 3.16
291 292 5.471456 GTGGCTATACTCATCAATTCCCAAG 59.529 44.000 0.00 0.00 0.00 3.61
292 293 5.132648 AGTGGCTATACTCATCAATTCCCAA 59.867 40.000 0.00 0.00 0.00 4.12
293 294 4.660303 AGTGGCTATACTCATCAATTCCCA 59.340 41.667 0.00 0.00 0.00 4.37
294 295 5.234466 AGTGGCTATACTCATCAATTCCC 57.766 43.478 0.00 0.00 0.00 3.97
295 296 6.291377 TGAAGTGGCTATACTCATCAATTCC 58.709 40.000 0.00 0.00 33.32 3.01
296 297 6.426328 CCTGAAGTGGCTATACTCATCAATTC 59.574 42.308 0.00 0.00 34.38 2.17
297 298 6.100279 TCCTGAAGTGGCTATACTCATCAATT 59.900 38.462 0.00 0.00 0.00 2.32
298 299 5.604231 TCCTGAAGTGGCTATACTCATCAAT 59.396 40.000 0.00 0.00 0.00 2.57
299 300 4.962362 TCCTGAAGTGGCTATACTCATCAA 59.038 41.667 0.00 0.00 0.00 2.57
300 301 4.546674 TCCTGAAGTGGCTATACTCATCA 58.453 43.478 0.00 0.00 0.00 3.07
301 302 5.621104 CGATCCTGAAGTGGCTATACTCATC 60.621 48.000 0.00 0.00 0.00 2.92
302 303 4.219507 CGATCCTGAAGTGGCTATACTCAT 59.780 45.833 0.00 0.00 0.00 2.90
303 304 3.570125 CGATCCTGAAGTGGCTATACTCA 59.430 47.826 0.00 0.00 0.00 3.41
304 305 3.612955 GCGATCCTGAAGTGGCTATACTC 60.613 52.174 0.00 0.00 0.00 2.59
305 306 2.297597 GCGATCCTGAAGTGGCTATACT 59.702 50.000 0.00 0.00 0.00 2.12
306 307 2.297597 AGCGATCCTGAAGTGGCTATAC 59.702 50.000 0.00 0.00 0.00 1.47
307 308 2.558795 GAGCGATCCTGAAGTGGCTATA 59.441 50.000 0.00 0.00 0.00 1.31
308 309 1.342819 GAGCGATCCTGAAGTGGCTAT 59.657 52.381 0.00 0.00 0.00 2.97
309 310 0.747255 GAGCGATCCTGAAGTGGCTA 59.253 55.000 0.00 0.00 0.00 3.93
310 311 1.519719 GAGCGATCCTGAAGTGGCT 59.480 57.895 0.00 0.00 0.00 4.75
311 312 1.880340 CGAGCGATCCTGAAGTGGC 60.880 63.158 0.00 0.00 0.00 5.01
312 313 0.526524 GACGAGCGATCCTGAAGTGG 60.527 60.000 0.00 0.00 0.00 4.00
313 314 0.171231 TGACGAGCGATCCTGAAGTG 59.829 55.000 0.00 0.00 0.00 3.16
314 315 0.888619 TTGACGAGCGATCCTGAAGT 59.111 50.000 0.00 0.00 0.00 3.01
315 316 1.135257 AGTTGACGAGCGATCCTGAAG 60.135 52.381 0.00 0.00 0.00 3.02
316 317 0.888619 AGTTGACGAGCGATCCTGAA 59.111 50.000 0.00 0.00 0.00 3.02
317 318 0.171231 CAGTTGACGAGCGATCCTGA 59.829 55.000 0.00 0.00 0.00 3.86
318 319 0.109086 ACAGTTGACGAGCGATCCTG 60.109 55.000 0.00 0.00 0.00 3.86
319 320 0.171455 GACAGTTGACGAGCGATCCT 59.829 55.000 0.00 0.00 0.00 3.24
320 321 1.134530 CGACAGTTGACGAGCGATCC 61.135 60.000 0.00 0.00 35.37 3.36
321 322 0.179197 TCGACAGTTGACGAGCGATC 60.179 55.000 2.76 0.00 37.31 3.69
322 323 1.873863 TCGACAGTTGACGAGCGAT 59.126 52.632 2.76 0.00 37.31 4.58
323 324 3.336566 TCGACAGTTGACGAGCGA 58.663 55.556 2.76 0.00 37.31 4.93
327 328 1.007734 GTGCCTCGACAGTTGACGA 60.008 57.895 6.53 6.53 39.59 4.20
328 329 0.874175 TTGTGCCTCGACAGTTGACG 60.874 55.000 0.00 0.00 34.74 4.35
329 330 0.861837 CTTGTGCCTCGACAGTTGAC 59.138 55.000 0.00 0.00 0.00 3.18
330 331 0.464036 ACTTGTGCCTCGACAGTTGA 59.536 50.000 0.00 0.00 0.00 3.18
331 332 0.583438 CACTTGTGCCTCGACAGTTG 59.417 55.000 0.00 0.00 0.00 3.16
332 333 0.178068 ACACTTGTGCCTCGACAGTT 59.822 50.000 0.10 0.00 0.00 3.16
333 334 0.249489 GACACTTGTGCCTCGACAGT 60.249 55.000 0.10 0.00 0.00 3.55
334 335 0.032678 AGACACTTGTGCCTCGACAG 59.967 55.000 0.10 0.00 0.00 3.51
335 336 0.032130 GAGACACTTGTGCCTCGACA 59.968 55.000 1.63 0.00 0.00 4.35
336 337 0.315568 AGAGACACTTGTGCCTCGAC 59.684 55.000 10.52 0.00 0.00 4.20
337 338 0.315251 CAGAGACACTTGTGCCTCGA 59.685 55.000 10.52 0.00 0.00 4.04
338 339 0.315251 TCAGAGACACTTGTGCCTCG 59.685 55.000 10.52 6.90 0.00 4.63
339 340 2.533266 TTCAGAGACACTTGTGCCTC 57.467 50.000 8.67 8.67 0.00 4.70
340 341 2.369860 TCATTCAGAGACACTTGTGCCT 59.630 45.455 0.10 0.00 0.00 4.75
341 342 2.771089 TCATTCAGAGACACTTGTGCC 58.229 47.619 0.10 0.00 0.00 5.01
342 343 4.453478 TGAATCATTCAGAGACACTTGTGC 59.547 41.667 0.00 0.00 34.08 4.57
343 344 6.549912 TTGAATCATTCAGAGACACTTGTG 57.450 37.500 0.00 0.00 41.38 3.33
344 345 7.166851 AGATTGAATCATTCAGAGACACTTGT 58.833 34.615 8.03 0.00 41.38 3.16
345 346 7.612668 AGATTGAATCATTCAGAGACACTTG 57.387 36.000 8.03 0.00 41.38 3.16
346 347 9.730705 TTAAGATTGAATCATTCAGAGACACTT 57.269 29.630 8.03 4.67 41.38 3.16
347 348 9.902684 ATTAAGATTGAATCATTCAGAGACACT 57.097 29.630 8.03 0.00 41.38 3.55
349 350 9.334947 GGATTAAGATTGAATCATTCAGAGACA 57.665 33.333 8.03 0.00 41.38 3.41
350 351 9.334947 TGGATTAAGATTGAATCATTCAGAGAC 57.665 33.333 8.03 0.00 41.38 3.36
351 352 9.910267 TTGGATTAAGATTGAATCATTCAGAGA 57.090 29.630 8.03 0.00 41.38 3.10
359 360 8.192774 GCTTGTGATTGGATTAAGATTGAATCA 58.807 33.333 8.03 0.00 35.40 2.57
360 361 7.650903 GGCTTGTGATTGGATTAAGATTGAATC 59.349 37.037 0.00 0.00 33.34 2.52
361 362 7.124599 TGGCTTGTGATTGGATTAAGATTGAAT 59.875 33.333 0.00 0.00 0.00 2.57
362 363 6.436847 TGGCTTGTGATTGGATTAAGATTGAA 59.563 34.615 0.00 0.00 0.00 2.69
363 364 5.951148 TGGCTTGTGATTGGATTAAGATTGA 59.049 36.000 0.00 0.00 0.00 2.57
364 365 6.211587 TGGCTTGTGATTGGATTAAGATTG 57.788 37.500 0.00 0.00 0.00 2.67
365 366 6.855763 TTGGCTTGTGATTGGATTAAGATT 57.144 33.333 0.00 0.00 0.00 2.40
366 367 6.855763 TTTGGCTTGTGATTGGATTAAGAT 57.144 33.333 0.00 0.00 0.00 2.40
367 368 6.855763 ATTTGGCTTGTGATTGGATTAAGA 57.144 33.333 0.00 0.00 0.00 2.10
368 369 6.254157 CGAATTTGGCTTGTGATTGGATTAAG 59.746 38.462 0.00 0.00 0.00 1.85
369 370 6.098679 CGAATTTGGCTTGTGATTGGATTAA 58.901 36.000 0.00 0.00 0.00 1.40
370 371 5.394005 CCGAATTTGGCTTGTGATTGGATTA 60.394 40.000 0.00 0.00 0.00 1.75
371 372 4.497300 CGAATTTGGCTTGTGATTGGATT 58.503 39.130 0.00 0.00 0.00 3.01
372 373 3.119029 CCGAATTTGGCTTGTGATTGGAT 60.119 43.478 0.00 0.00 0.00 3.41
373 374 2.230992 CCGAATTTGGCTTGTGATTGGA 59.769 45.455 0.00 0.00 0.00 3.53
374 375 2.609350 CCGAATTTGGCTTGTGATTGG 58.391 47.619 0.00 0.00 0.00 3.16
385 386 0.969917 TGGATGGTGGCCGAATTTGG 60.970 55.000 7.44 7.44 0.00 3.28
386 387 0.894141 TTGGATGGTGGCCGAATTTG 59.106 50.000 0.00 0.00 0.00 2.32
387 388 1.275010 GTTTGGATGGTGGCCGAATTT 59.725 47.619 0.00 0.00 31.71 1.82
388 389 0.894835 GTTTGGATGGTGGCCGAATT 59.105 50.000 0.00 0.00 31.71 2.17
389 390 0.251564 TGTTTGGATGGTGGCCGAAT 60.252 50.000 0.00 0.00 31.71 3.34
390 391 1.151679 TGTTTGGATGGTGGCCGAA 59.848 52.632 0.00 0.00 0.00 4.30
391 392 1.602323 GTGTTTGGATGGTGGCCGA 60.602 57.895 0.00 0.00 0.00 5.54
392 393 1.900981 TGTGTTTGGATGGTGGCCG 60.901 57.895 0.00 0.00 0.00 6.13
393 394 1.665442 GTGTGTTTGGATGGTGGCC 59.335 57.895 0.00 0.00 0.00 5.36
394 395 1.665442 GGTGTGTTTGGATGGTGGC 59.335 57.895 0.00 0.00 0.00 5.01
395 396 0.468958 TGGGTGTGTTTGGATGGTGG 60.469 55.000 0.00 0.00 0.00 4.61
396 397 1.273048 CATGGGTGTGTTTGGATGGTG 59.727 52.381 0.00 0.00 0.00 4.17
397 398 1.631405 CATGGGTGTGTTTGGATGGT 58.369 50.000 0.00 0.00 0.00 3.55
398 399 0.896923 CCATGGGTGTGTTTGGATGG 59.103 55.000 2.85 0.00 0.00 3.51
399 400 1.545582 GACCATGGGTGTGTTTGGATG 59.454 52.381 18.09 0.00 35.25 3.51
400 401 1.428912 AGACCATGGGTGTGTTTGGAT 59.571 47.619 18.09 0.00 35.25 3.41
401 402 0.850100 AGACCATGGGTGTGTTTGGA 59.150 50.000 18.09 0.00 35.25 3.53
402 403 1.613437 GAAGACCATGGGTGTGTTTGG 59.387 52.381 18.09 0.00 35.25 3.28
403 404 1.266718 CGAAGACCATGGGTGTGTTTG 59.733 52.381 18.09 0.00 35.25 2.93
404 405 1.604604 CGAAGACCATGGGTGTGTTT 58.395 50.000 18.09 0.54 35.25 2.83
405 406 0.250727 CCGAAGACCATGGGTGTGTT 60.251 55.000 18.09 0.00 35.25 3.32
406 407 1.125093 TCCGAAGACCATGGGTGTGT 61.125 55.000 18.09 0.00 35.25 3.72
407 408 0.253044 ATCCGAAGACCATGGGTGTG 59.747 55.000 18.09 1.34 35.25 3.82
408 409 0.991920 AATCCGAAGACCATGGGTGT 59.008 50.000 18.09 0.00 35.25 4.16
409 410 1.065491 TGAATCCGAAGACCATGGGTG 60.065 52.381 18.09 0.18 35.25 4.61
410 411 1.210478 CTGAATCCGAAGACCATGGGT 59.790 52.381 18.09 0.99 39.44 4.51
411 412 1.959042 CTGAATCCGAAGACCATGGG 58.041 55.000 18.09 0.00 0.00 4.00
412 413 1.134280 AGCTGAATCCGAAGACCATGG 60.134 52.381 11.19 11.19 0.00 3.66
413 414 2.322355 AGCTGAATCCGAAGACCATG 57.678 50.000 0.00 0.00 0.00 3.66
414 415 2.636830 CAAGCTGAATCCGAAGACCAT 58.363 47.619 0.00 0.00 0.00 3.55
415 416 1.945819 GCAAGCTGAATCCGAAGACCA 60.946 52.381 0.00 0.00 0.00 4.02
416 417 0.729690 GCAAGCTGAATCCGAAGACC 59.270 55.000 0.00 0.00 0.00 3.85
417 418 0.729690 GGCAAGCTGAATCCGAAGAC 59.270 55.000 0.00 0.00 0.00 3.01
418 419 0.615331 AGGCAAGCTGAATCCGAAGA 59.385 50.000 0.00 0.00 0.00 2.87
419 420 0.731417 CAGGCAAGCTGAATCCGAAG 59.269 55.000 0.00 0.00 0.00 3.79
420 421 1.308069 GCAGGCAAGCTGAATCCGAA 61.308 55.000 0.00 0.00 0.00 4.30
421 422 1.746615 GCAGGCAAGCTGAATCCGA 60.747 57.895 0.00 0.00 0.00 4.55
422 423 1.310933 AAGCAGGCAAGCTGAATCCG 61.311 55.000 5.21 0.00 45.89 4.18
423 424 0.455005 GAAGCAGGCAAGCTGAATCC 59.545 55.000 5.21 0.00 45.89 3.01
424 425 1.461559 AGAAGCAGGCAAGCTGAATC 58.538 50.000 5.21 0.34 45.89 2.52
425 426 1.817447 GAAGAAGCAGGCAAGCTGAAT 59.183 47.619 5.21 0.00 45.89 2.57
426 427 1.242076 GAAGAAGCAGGCAAGCTGAA 58.758 50.000 5.21 0.00 45.89 3.02
427 428 0.607489 GGAAGAAGCAGGCAAGCTGA 60.607 55.000 5.21 0.00 45.89 4.26
428 429 1.593296 GGGAAGAAGCAGGCAAGCTG 61.593 60.000 5.21 0.00 45.89 4.24
430 431 2.346541 GGGGAAGAAGCAGGCAAGC 61.347 63.158 0.00 0.00 0.00 4.01
431 432 0.324091 ATGGGGAAGAAGCAGGCAAG 60.324 55.000 0.00 0.00 0.00 4.01
432 433 0.998928 TATGGGGAAGAAGCAGGCAA 59.001 50.000 0.00 0.00 0.00 4.52
433 434 0.255890 GTATGGGGAAGAAGCAGGCA 59.744 55.000 0.00 0.00 0.00 4.75
434 435 0.548510 AGTATGGGGAAGAAGCAGGC 59.451 55.000 0.00 0.00 0.00 4.85
435 436 3.282885 GAAAGTATGGGGAAGAAGCAGG 58.717 50.000 0.00 0.00 0.00 4.85
436 437 3.955471 TGAAAGTATGGGGAAGAAGCAG 58.045 45.455 0.00 0.00 0.00 4.24
437 438 4.526970 GATGAAAGTATGGGGAAGAAGCA 58.473 43.478 0.00 0.00 0.00 3.91
438 439 3.885901 GGATGAAAGTATGGGGAAGAAGC 59.114 47.826 0.00 0.00 0.00 3.86
439 440 4.130118 CGGATGAAAGTATGGGGAAGAAG 58.870 47.826 0.00 0.00 0.00 2.85
440 441 3.521937 ACGGATGAAAGTATGGGGAAGAA 59.478 43.478 0.00 0.00 0.00 2.52
441 442 3.112263 ACGGATGAAAGTATGGGGAAGA 58.888 45.455 0.00 0.00 0.00 2.87
442 443 3.206150 CACGGATGAAAGTATGGGGAAG 58.794 50.000 0.00 0.00 0.00 3.46
443 444 2.682563 GCACGGATGAAAGTATGGGGAA 60.683 50.000 0.00 0.00 0.00 3.97
444 445 1.134220 GCACGGATGAAAGTATGGGGA 60.134 52.381 0.00 0.00 0.00 4.81
445 446 1.134098 AGCACGGATGAAAGTATGGGG 60.134 52.381 0.00 0.00 0.00 4.96
446 447 2.332063 AGCACGGATGAAAGTATGGG 57.668 50.000 0.00 0.00 0.00 4.00
447 448 2.614057 GGAAGCACGGATGAAAGTATGG 59.386 50.000 0.00 0.00 0.00 2.74
448 449 3.063997 GTGGAAGCACGGATGAAAGTATG 59.936 47.826 0.00 0.00 0.00 2.39
449 450 3.055094 AGTGGAAGCACGGATGAAAGTAT 60.055 43.478 0.00 0.00 0.00 2.12
450 451 2.301870 AGTGGAAGCACGGATGAAAGTA 59.698 45.455 0.00 0.00 0.00 2.24
451 452 1.072331 AGTGGAAGCACGGATGAAAGT 59.928 47.619 0.00 0.00 0.00 2.66
452 453 1.813513 AGTGGAAGCACGGATGAAAG 58.186 50.000 0.00 0.00 0.00 2.62
453 454 2.151202 GAAGTGGAAGCACGGATGAAA 58.849 47.619 0.00 0.00 0.00 2.69
454 455 1.071542 TGAAGTGGAAGCACGGATGAA 59.928 47.619 0.00 0.00 0.00 2.57
455 456 0.684535 TGAAGTGGAAGCACGGATGA 59.315 50.000 0.00 0.00 0.00 2.92
456 457 1.667724 GATGAAGTGGAAGCACGGATG 59.332 52.381 0.00 0.00 0.00 3.51
457 458 1.407437 GGATGAAGTGGAAGCACGGAT 60.407 52.381 0.00 0.00 0.00 4.18
458 459 0.036388 GGATGAAGTGGAAGCACGGA 60.036 55.000 0.00 0.00 0.00 4.69
459 460 0.036010 AGGATGAAGTGGAAGCACGG 60.036 55.000 0.00 0.00 0.00 4.94
460 461 2.271800 GTAGGATGAAGTGGAAGCACG 58.728 52.381 0.00 0.00 0.00 5.34
461 462 3.265791 CTGTAGGATGAAGTGGAAGCAC 58.734 50.000 0.00 0.00 0.00 4.40
462 463 2.906389 ACTGTAGGATGAAGTGGAAGCA 59.094 45.455 0.00 0.00 0.00 3.91
463 464 3.618690 ACTGTAGGATGAAGTGGAAGC 57.381 47.619 0.00 0.00 0.00 3.86
464 465 7.118496 AGATAACTGTAGGATGAAGTGGAAG 57.882 40.000 0.00 0.00 0.00 3.46
465 466 7.496346 AAGATAACTGTAGGATGAAGTGGAA 57.504 36.000 0.00 0.00 0.00 3.53
466 467 7.496346 AAAGATAACTGTAGGATGAAGTGGA 57.504 36.000 0.00 0.00 0.00 4.02
467 468 8.567285 AAAAAGATAACTGTAGGATGAAGTGG 57.433 34.615 0.00 0.00 0.00 4.00
496 497 9.667607 AGAGGGATGATTAGATTAGAAAGAGAA 57.332 33.333 0.00 0.00 0.00 2.87
497 498 9.087871 CAGAGGGATGATTAGATTAGAAAGAGA 57.912 37.037 0.00 0.00 0.00 3.10
498 499 9.087871 TCAGAGGGATGATTAGATTAGAAAGAG 57.912 37.037 0.00 0.00 0.00 2.85
499 500 9.612879 ATCAGAGGGATGATTAGATTAGAAAGA 57.387 33.333 0.00 0.00 36.50 2.52
506 507 9.804977 CCTTAAAATCAGAGGGATGATTAGATT 57.195 33.333 2.61 0.00 46.64 2.40
518 519 3.437052 CCCCATCCCCTTAAAATCAGAGG 60.437 52.174 0.00 0.00 0.00 3.69
519 520 3.205282 ACCCCATCCCCTTAAAATCAGAG 59.795 47.826 0.00 0.00 0.00 3.35
520 521 3.204382 GACCCCATCCCCTTAAAATCAGA 59.796 47.826 0.00 0.00 0.00 3.27
521 522 3.052944 TGACCCCATCCCCTTAAAATCAG 60.053 47.826 0.00 0.00 0.00 2.90
522 523 2.929724 TGACCCCATCCCCTTAAAATCA 59.070 45.455 0.00 0.00 0.00 2.57
523 524 3.566351 CTGACCCCATCCCCTTAAAATC 58.434 50.000 0.00 0.00 0.00 2.17
524 525 2.247372 CCTGACCCCATCCCCTTAAAAT 59.753 50.000 0.00 0.00 0.00 1.82
525 526 1.643811 CCTGACCCCATCCCCTTAAAA 59.356 52.381 0.00 0.00 0.00 1.52
526 527 1.304891 CCTGACCCCATCCCCTTAAA 58.695 55.000 0.00 0.00 0.00 1.52
527 528 1.286305 GCCTGACCCCATCCCCTTAA 61.286 60.000 0.00 0.00 0.00 1.85
528 529 1.696314 GCCTGACCCCATCCCCTTA 60.696 63.158 0.00 0.00 0.00 2.69
529 530 3.023735 GCCTGACCCCATCCCCTT 61.024 66.667 0.00 0.00 0.00 3.95
530 531 3.603330 AAGCCTGACCCCATCCCCT 62.603 63.158 0.00 0.00 0.00 4.79
531 532 1.286305 TAAAGCCTGACCCCATCCCC 61.286 60.000 0.00 0.00 0.00 4.81
532 533 0.853530 ATAAAGCCTGACCCCATCCC 59.146 55.000 0.00 0.00 0.00 3.85
533 534 2.755952 AATAAAGCCTGACCCCATCC 57.244 50.000 0.00 0.00 0.00 3.51
534 535 3.769300 ACAAAATAAAGCCTGACCCCATC 59.231 43.478 0.00 0.00 0.00 3.51
535 536 3.790126 ACAAAATAAAGCCTGACCCCAT 58.210 40.909 0.00 0.00 0.00 4.00
536 537 3.252554 ACAAAATAAAGCCTGACCCCA 57.747 42.857 0.00 0.00 0.00 4.96
537 538 4.617253 AAACAAAATAAAGCCTGACCCC 57.383 40.909 0.00 0.00 0.00 4.95
538 539 7.875554 TGATTAAAACAAAATAAAGCCTGACCC 59.124 33.333 0.00 0.00 0.00 4.46
539 540 8.825667 TGATTAAAACAAAATAAAGCCTGACC 57.174 30.769 0.00 0.00 0.00 4.02
550 551 9.118300 TGTGGCTTGATTTGATTAAAACAAAAT 57.882 25.926 12.70 2.78 37.87 1.82
551 552 8.498054 TGTGGCTTGATTTGATTAAAACAAAA 57.502 26.923 12.70 0.00 37.87 2.44
552 553 8.674263 ATGTGGCTTGATTTGATTAAAACAAA 57.326 26.923 7.01 11.59 37.87 2.83
553 554 9.202273 GTATGTGGCTTGATTTGATTAAAACAA 57.798 29.630 5.70 5.70 36.57 2.83
554 555 7.540400 CGTATGTGGCTTGATTTGATTAAAACA 59.460 33.333 0.00 0.00 0.00 2.83
555 556 7.462724 GCGTATGTGGCTTGATTTGATTAAAAC 60.463 37.037 0.00 0.00 0.00 2.43
556 557 6.529829 GCGTATGTGGCTTGATTTGATTAAAA 59.470 34.615 0.00 0.00 0.00 1.52
557 558 6.033341 GCGTATGTGGCTTGATTTGATTAAA 58.967 36.000 0.00 0.00 0.00 1.52
558 559 5.577835 GCGTATGTGGCTTGATTTGATTAA 58.422 37.500 0.00 0.00 0.00 1.40
559 560 4.260579 CGCGTATGTGGCTTGATTTGATTA 60.261 41.667 0.00 0.00 0.00 1.75
560 561 3.487376 CGCGTATGTGGCTTGATTTGATT 60.487 43.478 0.00 0.00 0.00 2.57
561 562 2.032054 CGCGTATGTGGCTTGATTTGAT 59.968 45.455 0.00 0.00 0.00 2.57
562 563 1.396648 CGCGTATGTGGCTTGATTTGA 59.603 47.619 0.00 0.00 0.00 2.69
563 564 1.531677 CCGCGTATGTGGCTTGATTTG 60.532 52.381 4.92 0.00 39.30 2.32
564 565 0.732571 CCGCGTATGTGGCTTGATTT 59.267 50.000 4.92 0.00 39.30 2.17
565 566 1.095228 CCCGCGTATGTGGCTTGATT 61.095 55.000 9.18 0.00 44.81 2.57
566 567 1.523711 CCCGCGTATGTGGCTTGAT 60.524 57.895 9.18 0.00 44.81 2.57
567 568 2.125310 CCCGCGTATGTGGCTTGA 60.125 61.111 9.18 0.00 44.81 3.02
568 569 2.125310 TCCCGCGTATGTGGCTTG 60.125 61.111 9.18 0.00 44.81 4.01
569 570 2.186903 CTCCCGCGTATGTGGCTT 59.813 61.111 9.18 0.00 44.81 4.35
570 571 4.530857 GCTCCCGCGTATGTGGCT 62.531 66.667 9.18 0.00 44.81 4.75
571 572 4.830765 TGCTCCCGCGTATGTGGC 62.831 66.667 9.18 1.00 44.81 5.01
572 573 2.890474 GTGCTCCCGCGTATGTGG 60.890 66.667 4.92 7.62 45.78 4.17
573 574 3.254654 CGTGCTCCCGCGTATGTG 61.255 66.667 4.92 0.00 39.95 3.21
574 575 4.508128 CCGTGCTCCCGCGTATGT 62.508 66.667 4.92 0.00 43.11 2.29
575 576 3.499929 ATCCGTGCTCCCGCGTATG 62.500 63.158 4.92 0.00 43.11 2.39
576 577 3.224324 ATCCGTGCTCCCGCGTAT 61.224 61.111 4.92 0.00 43.11 3.06
577 578 4.201679 CATCCGTGCTCCCGCGTA 62.202 66.667 4.92 0.00 43.11 4.42
600 601 4.704833 TTGCCTGCTCTCCGTGGC 62.705 66.667 0.00 0.00 45.10 5.01
601 602 2.435586 CTTGCCTGCTCTCCGTGG 60.436 66.667 0.00 0.00 0.00 4.94
602 603 1.739562 GACTTGCCTGCTCTCCGTG 60.740 63.158 0.00 0.00 0.00 4.94
603 604 1.882989 GAGACTTGCCTGCTCTCCGT 61.883 60.000 0.00 0.00 0.00 4.69
604 605 1.153667 GAGACTTGCCTGCTCTCCG 60.154 63.158 0.00 0.00 0.00 4.63
605 606 1.153667 CGAGACTTGCCTGCTCTCC 60.154 63.158 0.00 0.00 0.00 3.71
606 607 0.811915 TACGAGACTTGCCTGCTCTC 59.188 55.000 0.00 0.00 0.00 3.20
607 608 1.135915 CATACGAGACTTGCCTGCTCT 59.864 52.381 0.00 0.00 0.00 4.09
608 609 1.134965 ACATACGAGACTTGCCTGCTC 60.135 52.381 0.00 0.00 0.00 4.26
609 610 0.898320 ACATACGAGACTTGCCTGCT 59.102 50.000 0.00 0.00 0.00 4.24
610 611 1.002366 CACATACGAGACTTGCCTGC 58.998 55.000 0.00 0.00 0.00 4.85
611 612 2.654749 TCACATACGAGACTTGCCTG 57.345 50.000 0.00 0.00 0.00 4.85
612 613 2.159043 CCATCACATACGAGACTTGCCT 60.159 50.000 0.00 0.00 0.00 4.75
613 614 2.205074 CCATCACATACGAGACTTGCC 58.795 52.381 0.00 0.00 0.00 4.52
614 615 2.205074 CCCATCACATACGAGACTTGC 58.795 52.381 0.00 0.00 0.00 4.01
615 616 2.205074 GCCCATCACATACGAGACTTG 58.795 52.381 0.00 0.00 0.00 3.16
616 617 1.139058 GGCCCATCACATACGAGACTT 59.861 52.381 0.00 0.00 0.00 3.01
617 618 0.753262 GGCCCATCACATACGAGACT 59.247 55.000 0.00 0.00 0.00 3.24
618 619 0.597637 CGGCCCATCACATACGAGAC 60.598 60.000 0.00 0.00 0.00 3.36
619 620 1.040893 ACGGCCCATCACATACGAGA 61.041 55.000 0.00 0.00 0.00 4.04
620 621 0.597637 GACGGCCCATCACATACGAG 60.598 60.000 0.00 0.00 0.00 4.18
621 622 1.324005 TGACGGCCCATCACATACGA 61.324 55.000 0.00 0.00 0.00 3.43
622 623 0.875908 CTGACGGCCCATCACATACG 60.876 60.000 0.00 0.00 0.00 3.06
623 624 1.160329 GCTGACGGCCCATCACATAC 61.160 60.000 0.00 0.00 34.27 2.39
624 625 1.146041 GCTGACGGCCCATCACATA 59.854 57.895 0.00 0.00 34.27 2.29
625 626 2.124570 GCTGACGGCCCATCACAT 60.125 61.111 0.00 0.00 34.27 3.21
653 654 2.628178 GCCAAGGTTATAGGGCCAAATC 59.372 50.000 6.18 0.00 40.55 2.17
673 674 1.000145 GAGTTCGGTTCTTCGGATGC 59.000 55.000 0.00 0.00 0.00 3.91
674 675 1.135489 TCGAGTTCGGTTCTTCGGATG 60.135 52.381 1.26 0.00 40.29 3.51
675 676 1.132643 CTCGAGTTCGGTTCTTCGGAT 59.867 52.381 3.62 0.00 40.29 4.18
676 677 0.520404 CTCGAGTTCGGTTCTTCGGA 59.480 55.000 3.62 0.00 40.29 4.55
677 678 0.456312 CCTCGAGTTCGGTTCTTCGG 60.456 60.000 12.31 0.00 40.29 4.30
697 698 3.861840 TCCCATTTTCTCAGTGACGATC 58.138 45.455 0.00 0.00 0.00 3.69
732 733 6.265422 TCTCAGTTTCCCTTTTCTCCATTTTC 59.735 38.462 0.00 0.00 0.00 2.29
795 796 2.345760 GGAGTTGTAGCGTCGGGGA 61.346 63.158 0.00 0.00 0.00 4.81
907 908 0.393820 GGGTGGCGGGTCGATTTATA 59.606 55.000 0.00 0.00 0.00 0.98
937 938 0.038744 ACTTGGCTGGAGGAATGTGG 59.961 55.000 0.00 0.00 0.00 4.17
976 977 1.001641 GGCCTGACATGCCTGAAGT 60.002 57.895 13.97 0.00 45.70 3.01
992 993 1.153208 CTGAGCACCATCTGGAGGC 60.153 63.158 2.55 6.40 38.94 4.70
1071 1072 1.053424 GGGGCCGTATCTGGTCATTA 58.947 55.000 0.00 0.00 34.42 1.90
1311 1315 3.876300 CGGCAGTTGCTGTACTCC 58.124 61.111 4.77 0.00 42.29 3.85
1506 1510 0.456221 CGTAGATGTCTTCGGGCTGT 59.544 55.000 1.68 0.00 33.91 4.40
1515 1519 3.150767 GGCTATCTGGTCGTAGATGTCT 58.849 50.000 8.95 0.00 40.67 3.41
1533 1537 3.776969 TGTAGTCCTTGATGATCTTGGCT 59.223 43.478 0.00 1.44 0.00 4.75
1618 1622 2.528743 GCGACATGCGGATGGACTG 61.529 63.158 21.55 8.50 41.29 3.51
1705 1709 0.976641 ATGGTGACCTTCTCGAGCAA 59.023 50.000 7.81 2.36 0.00 3.91
1734 1738 1.253100 CGTACCCAAGGCCAATGTTT 58.747 50.000 5.01 0.00 0.00 2.83
1746 1750 2.922950 GCGGACACAGACGTACCCA 61.923 63.158 0.00 0.00 0.00 4.51
1776 1780 1.763968 CCTGGTCATAGGTCTCGTCA 58.236 55.000 0.00 0.00 32.99 4.35
1833 1837 1.550327 TCTCGATCTTGGACAGCAGT 58.450 50.000 0.00 0.00 0.00 4.40
1929 1933 3.257393 GTTGATCTGCTTGACGATGTCT 58.743 45.455 0.00 0.00 33.15 3.41
1989 2001 1.675641 GCCAACAAGATCAGGCGGT 60.676 57.895 0.00 0.00 37.41 5.68
2067 2079 1.063492 TCGCCCCTCACCAGTATCTAA 60.063 52.381 0.00 0.00 0.00 2.10
2068 2080 0.554305 TCGCCCCTCACCAGTATCTA 59.446 55.000 0.00 0.00 0.00 1.98
2111 2123 1.889454 GCCGTGCCATGGAAATGAA 59.111 52.632 18.40 0.00 0.00 2.57
2112 2124 3.602103 GCCGTGCCATGGAAATGA 58.398 55.556 18.40 0.00 0.00 2.57
2274 2292 1.580845 CCTTGCGCAAGACCTGGAAG 61.581 60.000 43.49 24.34 40.79 3.46
2370 2489 2.632377 GCATGCTGCAGAACTACCTTA 58.368 47.619 20.43 0.00 44.26 2.69
2424 2543 1.375140 CAGCATCTGGACTGCACGT 60.375 57.895 0.00 0.00 42.15 4.49
2520 2639 7.177878 ACCAAGTCTTCATGTATTCAGGATTT 58.822 34.615 0.00 0.00 34.35 2.17
2598 2717 1.787058 AGGTTAAGAAGGGTGGGCTTT 59.213 47.619 0.00 0.00 0.00 3.51
2682 2801 3.490759 CGCGCGCTCAGGTCAAAT 61.491 61.111 30.48 0.00 0.00 2.32
2706 2825 3.732212 CACGATGATCTTCCAATAGGCA 58.268 45.455 3.19 0.00 33.74 4.75
2712 2831 2.315925 GGAGCACGATGATCTTCCAA 57.684 50.000 3.19 0.00 32.54 3.53
2757 2876 3.220999 CTTGACGCCACGGAGGACA 62.221 63.158 0.00 0.00 41.22 4.02
2781 2900 0.693622 TCTCGAGGTCACTCTCCACT 59.306 55.000 13.56 0.00 41.71 4.00
2895 3014 2.548875 AGCAGCACGATGATCTTCTTC 58.451 47.619 6.99 0.00 0.00 2.87
2903 3022 1.596408 TGCCTAAGCAGCACGATGA 59.404 52.632 0.00 0.00 46.52 2.92
2917 3036 2.286523 CGACCTCCTTGGACTGCCT 61.287 63.158 0.00 0.00 39.71 4.75
2984 3103 1.485124 TCACAGACGCTGATACCCAT 58.515 50.000 12.77 0.00 35.18 4.00
2989 3108 1.409064 GGGACATCACAGACGCTGATA 59.591 52.381 12.77 2.26 35.18 2.15
2995 3114 0.321671 AACCAGGGACATCACAGACG 59.678 55.000 0.00 0.00 0.00 4.18
2998 3117 0.401738 ACCAACCAGGGACATCACAG 59.598 55.000 0.00 0.00 43.89 3.66
3015 3134 0.909610 TGGATCAGTCTCACCCCACC 60.910 60.000 0.00 0.00 0.00 4.61
3016 3135 0.539051 CTGGATCAGTCTCACCCCAC 59.461 60.000 0.00 0.00 0.00 4.61
3019 3138 3.742640 GCATAACTGGATCAGTCTCACCC 60.743 52.174 0.75 0.00 44.62 4.61
3020 3139 3.133721 AGCATAACTGGATCAGTCTCACC 59.866 47.826 0.75 0.00 44.62 4.02
3022 3141 5.510349 GCATAGCATAACTGGATCAGTCTCA 60.510 44.000 0.75 0.00 44.62 3.27
3023 3142 4.928615 GCATAGCATAACTGGATCAGTCTC 59.071 45.833 0.75 0.00 44.62 3.36
3025 3144 4.892433 AGCATAGCATAACTGGATCAGTC 58.108 43.478 0.75 0.00 44.62 3.51
3028 3147 5.294734 TGAAGCATAGCATAACTGGATCA 57.705 39.130 0.00 0.00 0.00 2.92
3029 3148 6.206243 ACATTGAAGCATAGCATAACTGGATC 59.794 38.462 0.00 0.00 0.00 3.36
3030 3149 6.066690 ACATTGAAGCATAGCATAACTGGAT 58.933 36.000 0.00 0.00 0.00 3.41
3032 3151 5.762825 ACATTGAAGCATAGCATAACTGG 57.237 39.130 0.00 0.00 0.00 4.00
3033 3152 6.788243 TGAACATTGAAGCATAGCATAACTG 58.212 36.000 0.00 0.00 0.00 3.16
3034 3153 6.600822 ACTGAACATTGAAGCATAGCATAACT 59.399 34.615 0.00 0.00 0.00 2.24
3035 3154 6.789262 ACTGAACATTGAAGCATAGCATAAC 58.211 36.000 0.00 0.00 0.00 1.89
3089 3254 9.409312 CTGAACAAAATGCATAACATAACTGAA 57.591 29.630 0.00 0.00 38.34 3.02
3110 3275 5.297547 TCAGTCATCACCAAAGTACTGAAC 58.702 41.667 0.00 0.00 40.10 3.18
3113 3278 4.093998 GCATCAGTCATCACCAAAGTACTG 59.906 45.833 0.00 0.00 36.52 2.74
3118 3283 3.079578 ACTGCATCAGTCATCACCAAAG 58.920 45.455 0.00 0.00 41.21 2.77
3142 3308 6.984474 GCTAACATAGAACCACAGCATAGTTA 59.016 38.462 0.00 0.00 0.00 2.24
3145 3311 5.359756 TGCTAACATAGAACCACAGCATAG 58.640 41.667 0.00 0.00 32.94 2.23
3208 3374 6.762187 TCCGTAACTGAACATAACAAGTTTGA 59.238 34.615 0.00 0.00 0.00 2.69
3230 3396 1.441515 CACACGACAGTACGGTCCG 60.442 63.158 18.69 10.48 37.61 4.79
3234 3400 0.388006 TGATGCACACGACAGTACGG 60.388 55.000 0.00 0.00 37.61 4.02
3236 3402 2.337583 ACATGATGCACACGACAGTAC 58.662 47.619 0.00 0.00 0.00 2.73
3244 3410 5.376854 AACTTAGGAAACATGATGCACAC 57.623 39.130 0.00 0.00 0.00 3.82
3286 3452 4.156008 CCTACTGTAAAAACTGTGGATGCC 59.844 45.833 1.46 0.00 0.00 4.40
3395 3577 6.483640 GGTGCCCTATCAAACTAGTATGAAAG 59.516 42.308 0.00 0.00 0.00 2.62
3450 4341 5.367945 TCAGACCCTCCATATAAAACCAC 57.632 43.478 0.00 0.00 0.00 4.16
3463 4354 2.560981 GCTAAGCTAGGATCAGACCCTC 59.439 54.545 0.00 0.00 35.30 4.30
3514 4413 9.077885 TGCTGGAGAATAAACTCATTTTAAGTT 57.922 29.630 0.00 0.00 38.59 2.66
3523 4422 5.957771 AGGTATGCTGGAGAATAAACTCA 57.042 39.130 0.00 0.00 38.51 3.41
3564 4463 4.612264 TCTCCTGTTGTGTACCCTTTAC 57.388 45.455 0.00 0.00 0.00 2.01
3565 4464 5.131475 ACTTTCTCCTGTTGTGTACCCTTTA 59.869 40.000 0.00 0.00 0.00 1.85
3566 4465 4.079958 ACTTTCTCCTGTTGTGTACCCTTT 60.080 41.667 0.00 0.00 0.00 3.11
3569 4468 3.487120 ACTTTCTCCTGTTGTGTACCC 57.513 47.619 0.00 0.00 0.00 3.69
3574 4494 5.123186 TGTTTGTGTACTTTCTCCTGTTGTG 59.877 40.000 0.00 0.00 0.00 3.33
3592 4512 6.318648 ACATGTATGAAGTGAACTGTGTTTGT 59.681 34.615 0.00 0.00 0.00 2.83
3596 4516 6.521162 TGTACATGTATGAAGTGAACTGTGT 58.479 36.000 9.18 0.00 0.00 3.72
3611 4569 5.106038 CGTAGAACCCAGAACTGTACATGTA 60.106 44.000 0.08 0.08 0.00 2.29
3613 4571 4.174009 CGTAGAACCCAGAACTGTACATG 58.826 47.826 0.00 0.00 0.00 3.21
3670 4628 6.934645 TGGATGCCACTATTACTATTAAGTGC 59.065 38.462 0.00 0.00 38.39 4.40
3746 4704 2.427232 TGTGCAGCTTTCTTCAATGC 57.573 45.000 0.00 0.00 37.40 3.56
3798 4761 1.570501 AGCCCAGCTTTCCAATATGGA 59.429 47.619 0.00 0.00 46.61 3.41
3799 4762 2.077687 AGCCCAGCTTTCCAATATGG 57.922 50.000 0.00 0.00 33.89 2.74
3801 4764 4.907875 TCTACTAGCCCAGCTTTCCAATAT 59.092 41.667 0.00 0.00 40.44 1.28
3802 4765 4.295201 TCTACTAGCCCAGCTTTCCAATA 58.705 43.478 0.00 0.00 40.44 1.90
3803 4766 3.115390 TCTACTAGCCCAGCTTTCCAAT 58.885 45.455 0.00 0.00 40.44 3.16
3804 4767 2.546899 TCTACTAGCCCAGCTTTCCAA 58.453 47.619 0.00 0.00 40.44 3.53
3805 4768 2.247699 TCTACTAGCCCAGCTTTCCA 57.752 50.000 0.00 0.00 40.44 3.53
3806 4769 3.271729 GTTTCTACTAGCCCAGCTTTCC 58.728 50.000 0.00 0.00 40.44 3.13
3820 4784 6.131544 ACATTTGAAGGTGTGTGTTTCTAC 57.868 37.500 0.00 0.00 0.00 2.59
3827 4791 5.643664 CCATGATACATTTGAAGGTGTGTG 58.356 41.667 0.00 0.00 0.00 3.82
3855 4819 1.629013 TTCTACTCGCGTGCTTGATG 58.371 50.000 5.77 0.00 0.00 3.07
3911 4875 5.024555 GCAAGAACAAGATAAAGATCGTGC 58.975 41.667 1.48 0.00 43.16 5.34
3959 4923 1.352622 TGTGCCAGGTTCTCCAGGTT 61.353 55.000 0.00 0.00 41.70 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.