Multiple sequence alignment - TraesCS4B01G216000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G216000 chr4B 100.000 4547 0 0 1 4547 455753699 455758245 0.000000e+00 8397
1 TraesCS4B01G216000 chr4B 95.188 665 28 2 3883 4547 109310289 109309629 0.000000e+00 1048
2 TraesCS4B01G216000 chr4B 94.428 664 33 3 3884 4547 570637424 570636765 0.000000e+00 1018
3 TraesCS4B01G216000 chr4B 94.127 664 35 2 3884 4547 99920721 99921380 0.000000e+00 1007
4 TraesCS4B01G216000 chr4B 95.000 320 16 0 1 320 451925930 451926249 1.890000e-138 503
5 TraesCS4B01G216000 chr4B 94.375 320 18 0 1 320 455674936 455675255 4.090000e-135 492
6 TraesCS4B01G216000 chr4B 84.727 275 29 4 3622 3883 651908990 651909264 3.490000e-66 263
7 TraesCS4B01G216000 chr4D 95.542 3073 107 17 754 3821 370672693 370675740 0.000000e+00 4889
8 TraesCS4B01G216000 chr4D 96.092 435 17 0 326 760 370629429 370629863 0.000000e+00 710
9 TraesCS4B01G216000 chr4A 93.981 3223 164 11 381 3585 93485445 93488655 0.000000e+00 4850
10 TraesCS4B01G216000 chr3B 94.721 663 31 2 3885 4547 488140678 488141336 0.000000e+00 1027
11 TraesCS4B01G216000 chr3B 92.500 320 24 0 1 320 405531433 405531752 4.150000e-125 459
12 TraesCS4B01G216000 chr6B 94.428 664 36 1 3884 4547 490467315 490467977 0.000000e+00 1020
13 TraesCS4B01G216000 chr6B 91.688 385 28 3 321 705 48223226 48223606 8.660000e-147 531
14 TraesCS4B01G216000 chr5B 94.428 664 34 3 3884 4547 558426580 558427240 0.000000e+00 1018
15 TraesCS4B01G216000 chr5B 93.472 674 40 2 3874 4547 626309600 626310269 0.000000e+00 998
16 TraesCS4B01G216000 chr2B 94.277 664 34 4 3884 4547 573319464 573318805 0.000000e+00 1013
17 TraesCS4B01G216000 chr2B 94.127 664 35 2 3884 4547 225026434 225027093 0.000000e+00 1007
18 TraesCS4B01G216000 chr2B 76.923 286 52 9 2972 3248 728752558 728752278 2.830000e-32 150
19 TraesCS4B01G216000 chr6D 90.278 648 54 7 321 965 60500062 60500703 0.000000e+00 839
20 TraesCS4B01G216000 chr6D 90.078 645 59 4 321 963 199572082 199572723 0.000000e+00 832
21 TraesCS4B01G216000 chr6D 88.390 646 58 13 321 965 199573219 199573848 0.000000e+00 761
22 TraesCS4B01G216000 chr6D 75.637 628 110 37 2685 3285 122519139 122519750 5.800000e-69 272
23 TraesCS4B01G216000 chr3D 89.219 640 60 6 321 958 390954706 390955338 0.000000e+00 791
24 TraesCS4B01G216000 chr3D 75.453 607 121 23 2689 3276 511535569 511536166 2.080000e-68 270
25 TraesCS4B01G216000 chrUn 88.940 651 50 13 321 965 111931501 111932135 0.000000e+00 784
26 TraesCS4B01G216000 chr6A 89.399 566 49 6 325 890 27469936 27470490 0.000000e+00 702
27 TraesCS4B01G216000 chr6A 76.858 592 99 33 2685 3252 160475595 160476172 2.660000e-77 300
28 TraesCS4B01G216000 chr7B 94.357 319 17 1 1 318 135586048 135586366 5.290000e-134 488
29 TraesCS4B01G216000 chr7B 94.118 323 16 2 1 320 351368200 351368522 5.290000e-134 488
30 TraesCS4B01G216000 chr7B 92.453 318 24 0 1 318 126232979 126233296 5.360000e-124 455
31 TraesCS4B01G216000 chr1B 94.357 319 17 1 1 318 215835382 215835064 5.290000e-134 488
32 TraesCS4B01G216000 chr1B 92.523 321 23 1 1 320 215661714 215661394 4.150000e-125 459
33 TraesCS4B01G216000 chr1B 92.812 320 17 4 3 320 431470181 431470496 4.150000e-125 459
34 TraesCS4B01G216000 chr1B 80.970 268 42 7 701 965 289182784 289183045 2.140000e-48 204
35 TraesCS4B01G216000 chr1A 77.879 547 98 17 2726 3259 453074251 453074787 7.340000e-83 318
36 TraesCS4B01G216000 chr7D 84.727 275 29 4 3622 3883 94747382 94747108 3.490000e-66 263
37 TraesCS4B01G216000 chr2D 83.704 270 28 7 3628 3883 324038450 324038717 1.630000e-59 241
38 TraesCS4B01G216000 chr2D 76.573 286 53 9 2972 3248 599288180 599287900 1.320000e-30 145
39 TraesCS4B01G216000 chr5D 81.604 212 30 6 710 919 74485292 74485088 2.810000e-37 167
40 TraesCS4B01G216000 chr2A 76.923 286 52 9 2972 3248 733391958 733391678 2.830000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G216000 chr4B 455753699 455758245 4546 False 8397.0 8397 100.000 1 4547 1 chr4B.!!$F4 4546
1 TraesCS4B01G216000 chr4B 109309629 109310289 660 True 1048.0 1048 95.188 3883 4547 1 chr4B.!!$R1 664
2 TraesCS4B01G216000 chr4B 570636765 570637424 659 True 1018.0 1018 94.428 3884 4547 1 chr4B.!!$R2 663
3 TraesCS4B01G216000 chr4B 99920721 99921380 659 False 1007.0 1007 94.127 3884 4547 1 chr4B.!!$F1 663
4 TraesCS4B01G216000 chr4D 370672693 370675740 3047 False 4889.0 4889 95.542 754 3821 1 chr4D.!!$F2 3067
5 TraesCS4B01G216000 chr4A 93485445 93488655 3210 False 4850.0 4850 93.981 381 3585 1 chr4A.!!$F1 3204
6 TraesCS4B01G216000 chr3B 488140678 488141336 658 False 1027.0 1027 94.721 3885 4547 1 chr3B.!!$F2 662
7 TraesCS4B01G216000 chr6B 490467315 490467977 662 False 1020.0 1020 94.428 3884 4547 1 chr6B.!!$F2 663
8 TraesCS4B01G216000 chr5B 558426580 558427240 660 False 1018.0 1018 94.428 3884 4547 1 chr5B.!!$F1 663
9 TraesCS4B01G216000 chr5B 626309600 626310269 669 False 998.0 998 93.472 3874 4547 1 chr5B.!!$F2 673
10 TraesCS4B01G216000 chr2B 573318805 573319464 659 True 1013.0 1013 94.277 3884 4547 1 chr2B.!!$R1 663
11 TraesCS4B01G216000 chr2B 225026434 225027093 659 False 1007.0 1007 94.127 3884 4547 1 chr2B.!!$F1 663
12 TraesCS4B01G216000 chr6D 60500062 60500703 641 False 839.0 839 90.278 321 965 1 chr6D.!!$F1 644
13 TraesCS4B01G216000 chr6D 199572082 199573848 1766 False 796.5 832 89.234 321 965 2 chr6D.!!$F3 644
14 TraesCS4B01G216000 chr6D 122519139 122519750 611 False 272.0 272 75.637 2685 3285 1 chr6D.!!$F2 600
15 TraesCS4B01G216000 chr3D 390954706 390955338 632 False 791.0 791 89.219 321 958 1 chr3D.!!$F1 637
16 TraesCS4B01G216000 chr3D 511535569 511536166 597 False 270.0 270 75.453 2689 3276 1 chr3D.!!$F2 587
17 TraesCS4B01G216000 chrUn 111931501 111932135 634 False 784.0 784 88.940 321 965 1 chrUn.!!$F1 644
18 TraesCS4B01G216000 chr6A 27469936 27470490 554 False 702.0 702 89.399 325 890 1 chr6A.!!$F1 565
19 TraesCS4B01G216000 chr6A 160475595 160476172 577 False 300.0 300 76.858 2685 3252 1 chr6A.!!$F2 567
20 TraesCS4B01G216000 chr1A 453074251 453074787 536 False 318.0 318 77.879 2726 3259 1 chr1A.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.042881 ACCCCTTAGTCCAGGACTCC 59.957 60.0 26.42 0.00 42.4 3.85 F
317 318 0.340208 CCCTTAGTCCAGGACTCCCT 59.660 60.0 26.42 4.72 42.4 4.20 F
941 2080 0.743345 ACGGGAGCTTATTTCCACGC 60.743 55.0 0.00 0.00 36.4 5.34 F
1983 3125 0.490017 TCAACCCCTCTACCCTGTCA 59.510 55.0 0.00 0.00 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1512 2654 0.185901 TTGGCCTCTTCTGCTGGTTT 59.814 50.000 3.32 0.00 0.00 3.27 R
1983 3125 1.528824 CGGGCTCATCACCATCCTT 59.471 57.895 0.00 0.00 0.00 3.36 R
2520 3674 1.093159 AAGATACCGAAGACGCGACT 58.907 50.000 15.93 10.02 38.29 4.18 R
3953 5151 0.188342 AACATTGTGTCCCCAGCCTT 59.812 50.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.786967 GAGTATAGGGGTTACAAGAGTTGA 57.213 41.667 0.00 0.00 0.00 3.18
24 25 7.362802 GAGTATAGGGGTTACAAGAGTTGAT 57.637 40.000 0.00 0.00 0.00 2.57
25 26 7.362802 AGTATAGGGGTTACAAGAGTTGATC 57.637 40.000 0.00 0.00 0.00 2.92
26 27 7.133483 AGTATAGGGGTTACAAGAGTTGATCT 58.867 38.462 0.00 0.00 41.27 2.75
27 28 8.287350 AGTATAGGGGTTACAAGAGTTGATCTA 58.713 37.037 0.00 0.00 37.23 1.98
28 29 5.678955 AGGGGTTACAAGAGTTGATCTAC 57.321 43.478 0.00 0.00 37.23 2.59
29 30 4.470304 AGGGGTTACAAGAGTTGATCTACC 59.530 45.833 3.54 0.00 37.23 3.18
30 31 4.470304 GGGGTTACAAGAGTTGATCTACCT 59.530 45.833 3.54 0.00 37.23 3.08
31 32 5.395435 GGGGTTACAAGAGTTGATCTACCTC 60.395 48.000 3.54 1.73 37.23 3.85
32 33 5.341617 GGTTACAAGAGTTGATCTACCTCG 58.658 45.833 3.54 0.00 37.23 4.63
33 34 5.125097 GGTTACAAGAGTTGATCTACCTCGA 59.875 44.000 3.54 0.00 37.23 4.04
34 35 4.974368 ACAAGAGTTGATCTACCTCGAG 57.026 45.455 5.13 5.13 37.23 4.04
35 36 4.590918 ACAAGAGTTGATCTACCTCGAGA 58.409 43.478 15.71 0.00 37.23 4.04
36 37 5.197451 ACAAGAGTTGATCTACCTCGAGAT 58.803 41.667 15.71 0.00 37.23 2.75
44 45 5.224562 GATCTACCTCGAGATCGTAATGG 57.775 47.826 15.71 0.00 41.79 3.16
45 46 2.812591 TCTACCTCGAGATCGTAATGGC 59.187 50.000 15.71 0.00 40.80 4.40
46 47 1.693627 ACCTCGAGATCGTAATGGCT 58.306 50.000 15.71 0.00 40.80 4.75
47 48 2.860009 ACCTCGAGATCGTAATGGCTA 58.140 47.619 15.71 0.00 40.80 3.93
48 49 3.220110 ACCTCGAGATCGTAATGGCTAA 58.780 45.455 15.71 0.00 40.80 3.09
49 50 3.635373 ACCTCGAGATCGTAATGGCTAAA 59.365 43.478 15.71 0.00 40.80 1.85
50 51 3.982058 CCTCGAGATCGTAATGGCTAAAC 59.018 47.826 15.71 0.00 40.80 2.01
51 52 3.973657 TCGAGATCGTAATGGCTAAACC 58.026 45.455 1.70 0.00 40.80 3.27
52 53 3.057734 CGAGATCGTAATGGCTAAACCC 58.942 50.000 0.00 0.00 33.83 4.11
53 54 3.243771 CGAGATCGTAATGGCTAAACCCT 60.244 47.826 0.00 0.00 33.83 4.34
54 55 4.022589 CGAGATCGTAATGGCTAAACCCTA 60.023 45.833 0.00 0.00 33.83 3.53
55 56 5.470047 AGATCGTAATGGCTAAACCCTAG 57.530 43.478 0.00 0.00 37.83 3.02
56 57 5.145564 AGATCGTAATGGCTAAACCCTAGA 58.854 41.667 0.00 0.00 37.83 2.43
57 58 5.780793 AGATCGTAATGGCTAAACCCTAGAT 59.219 40.000 0.00 0.00 37.83 1.98
58 59 5.881923 TCGTAATGGCTAAACCCTAGATT 57.118 39.130 0.00 0.00 37.83 2.40
59 60 5.607477 TCGTAATGGCTAAACCCTAGATTG 58.393 41.667 0.00 0.00 37.83 2.67
60 61 5.129815 TCGTAATGGCTAAACCCTAGATTGT 59.870 40.000 0.00 0.00 37.83 2.71
61 62 6.324512 TCGTAATGGCTAAACCCTAGATTGTA 59.675 38.462 0.00 0.00 37.83 2.41
62 63 7.015877 TCGTAATGGCTAAACCCTAGATTGTAT 59.984 37.037 0.00 0.00 37.83 2.29
63 64 8.308931 CGTAATGGCTAAACCCTAGATTGTATA 58.691 37.037 0.00 0.00 37.83 1.47
64 65 9.654663 GTAATGGCTAAACCCTAGATTGTATAG 57.345 37.037 0.00 0.00 37.83 1.31
65 66 6.110411 TGGCTAAACCCTAGATTGTATAGC 57.890 41.667 0.00 0.00 37.83 2.97
66 67 5.489249 GGCTAAACCCTAGATTGTATAGCC 58.511 45.833 12.36 12.36 45.01 3.93
67 68 5.248705 GGCTAAACCCTAGATTGTATAGCCT 59.751 44.000 16.99 0.00 46.69 4.58
68 69 6.439692 GGCTAAACCCTAGATTGTATAGCCTA 59.560 42.308 16.99 0.00 46.69 3.93
69 70 7.125963 GGCTAAACCCTAGATTGTATAGCCTAT 59.874 40.741 16.99 0.00 46.69 2.57
70 71 7.982354 GCTAAACCCTAGATTGTATAGCCTATG 59.018 40.741 0.00 0.00 0.00 2.23
71 72 9.256228 CTAAACCCTAGATTGTATAGCCTATGA 57.744 37.037 0.00 0.00 0.00 2.15
72 73 8.506196 AAACCCTAGATTGTATAGCCTATGAA 57.494 34.615 0.00 0.00 0.00 2.57
73 74 8.686739 AACCCTAGATTGTATAGCCTATGAAT 57.313 34.615 0.00 0.00 0.00 2.57
74 75 8.083828 ACCCTAGATTGTATAGCCTATGAATG 57.916 38.462 0.00 0.00 0.00 2.67
75 76 7.680310 ACCCTAGATTGTATAGCCTATGAATGT 59.320 37.037 0.00 0.00 0.00 2.71
76 77 8.543774 CCCTAGATTGTATAGCCTATGAATGTT 58.456 37.037 0.00 0.00 0.00 2.71
83 84 9.890629 TTGTATAGCCTATGAATGTTATGATCC 57.109 33.333 0.00 0.00 0.00 3.36
84 85 8.486210 TGTATAGCCTATGAATGTTATGATCCC 58.514 37.037 0.00 0.00 0.00 3.85
85 86 5.184892 AGCCTATGAATGTTATGATCCCC 57.815 43.478 0.00 0.00 0.00 4.81
86 87 4.854436 AGCCTATGAATGTTATGATCCCCT 59.146 41.667 0.00 0.00 0.00 4.79
87 88 5.045286 AGCCTATGAATGTTATGATCCCCTC 60.045 44.000 0.00 0.00 0.00 4.30
88 89 5.045286 GCCTATGAATGTTATGATCCCCTCT 60.045 44.000 0.00 0.00 0.00 3.69
89 90 6.648192 CCTATGAATGTTATGATCCCCTCTC 58.352 44.000 0.00 0.00 0.00 3.20
90 91 4.982241 TGAATGTTATGATCCCCTCTCC 57.018 45.455 0.00 0.00 0.00 3.71
91 92 3.324846 TGAATGTTATGATCCCCTCTCCG 59.675 47.826 0.00 0.00 0.00 4.63
92 93 1.717032 TGTTATGATCCCCTCTCCGG 58.283 55.000 0.00 0.00 0.00 5.14
93 94 1.062428 TGTTATGATCCCCTCTCCGGT 60.062 52.381 0.00 0.00 0.00 5.28
94 95 1.619332 GTTATGATCCCCTCTCCGGTC 59.381 57.143 0.00 0.00 0.00 4.79
95 96 1.158904 TATGATCCCCTCTCCGGTCT 58.841 55.000 0.00 0.00 0.00 3.85
96 97 1.158904 ATGATCCCCTCTCCGGTCTA 58.841 55.000 0.00 0.00 0.00 2.59
97 98 0.931468 TGATCCCCTCTCCGGTCTAA 59.069 55.000 0.00 0.00 0.00 2.10
98 99 1.133450 TGATCCCCTCTCCGGTCTAAG 60.133 57.143 0.00 0.00 0.00 2.18
99 100 0.470268 ATCCCCTCTCCGGTCTAAGC 60.470 60.000 0.00 0.00 0.00 3.09
100 101 2.134933 CCCCTCTCCGGTCTAAGCC 61.135 68.421 0.00 0.00 0.00 4.35
101 102 2.134933 CCCTCTCCGGTCTAAGCCC 61.135 68.421 0.00 0.00 0.00 5.19
102 103 1.075896 CCTCTCCGGTCTAAGCCCT 60.076 63.158 0.00 0.00 0.00 5.19
103 104 1.110518 CCTCTCCGGTCTAAGCCCTC 61.111 65.000 0.00 0.00 0.00 4.30
104 105 1.076192 TCTCCGGTCTAAGCCCTCC 60.076 63.158 0.00 0.00 0.00 4.30
105 106 2.441532 TCCGGTCTAAGCCCTCCG 60.442 66.667 0.00 0.00 42.22 4.63
107 108 2.758737 CGGTCTAAGCCCTCCGGT 60.759 66.667 0.00 0.00 39.41 5.28
108 109 2.356780 CGGTCTAAGCCCTCCGGTT 61.357 63.158 0.00 0.00 39.41 4.44
109 110 1.896122 CGGTCTAAGCCCTCCGGTTT 61.896 60.000 0.00 0.00 39.41 3.27
110 111 1.197812 GGTCTAAGCCCTCCGGTTTA 58.802 55.000 0.00 0.00 33.99 2.01
111 112 1.767088 GGTCTAAGCCCTCCGGTTTAT 59.233 52.381 0.00 0.00 34.65 1.40
112 113 2.967887 GGTCTAAGCCCTCCGGTTTATA 59.032 50.000 0.00 0.00 34.65 0.98
113 114 3.581770 GGTCTAAGCCCTCCGGTTTATAT 59.418 47.826 0.00 0.00 34.65 0.86
114 115 4.774200 GGTCTAAGCCCTCCGGTTTATATA 59.226 45.833 0.00 0.00 34.65 0.86
115 116 5.105432 GGTCTAAGCCCTCCGGTTTATATAG 60.105 48.000 0.00 0.00 34.65 1.31
116 117 5.713861 GTCTAAGCCCTCCGGTTTATATAGA 59.286 44.000 0.00 2.09 34.65 1.98
117 118 4.886496 AAGCCCTCCGGTTTATATAGAC 57.114 45.455 0.00 0.00 29.39 2.59
118 119 3.853207 AGCCCTCCGGTTTATATAGACA 58.147 45.455 0.00 0.00 0.00 3.41
119 120 3.577415 AGCCCTCCGGTTTATATAGACAC 59.423 47.826 0.00 0.00 0.00 3.67
120 121 3.306571 GCCCTCCGGTTTATATAGACACC 60.307 52.174 0.00 2.59 0.00 4.16
137 138 3.480133 CGGAGGGGCCTAGGGTTG 61.480 72.222 11.72 0.00 0.00 3.77
138 139 2.286197 GGAGGGGCCTAGGGTTGT 60.286 66.667 11.72 0.00 0.00 3.32
139 140 1.003835 GGAGGGGCCTAGGGTTGTA 59.996 63.158 11.72 0.00 0.00 2.41
140 141 1.343431 GGAGGGGCCTAGGGTTGTAC 61.343 65.000 11.72 0.00 0.00 2.90
141 142 0.619543 GAGGGGCCTAGGGTTGTACA 60.620 60.000 11.72 0.00 0.00 2.90
142 143 0.178855 AGGGGCCTAGGGTTGTACAA 60.179 55.000 11.72 3.59 0.00 2.41
143 144 0.699981 GGGGCCTAGGGTTGTACAAA 59.300 55.000 10.51 0.00 0.00 2.83
144 145 1.340697 GGGGCCTAGGGTTGTACAAAG 60.341 57.143 10.51 3.90 0.00 2.77
145 146 1.353358 GGGCCTAGGGTTGTACAAAGT 59.647 52.381 10.51 0.30 0.00 2.66
146 147 2.617276 GGGCCTAGGGTTGTACAAAGTC 60.617 54.545 10.51 3.22 0.00 3.01
147 148 2.344025 GCCTAGGGTTGTACAAAGTCG 58.656 52.381 10.51 0.00 0.00 4.18
148 149 2.933928 GCCTAGGGTTGTACAAAGTCGG 60.934 54.545 10.51 8.59 0.00 4.79
149 150 2.301009 CCTAGGGTTGTACAAAGTCGGT 59.699 50.000 10.51 0.00 0.00 4.69
150 151 3.244318 CCTAGGGTTGTACAAAGTCGGTT 60.244 47.826 10.51 0.00 0.00 4.44
151 152 3.286329 AGGGTTGTACAAAGTCGGTTT 57.714 42.857 10.51 0.00 0.00 3.27
152 153 4.420522 AGGGTTGTACAAAGTCGGTTTA 57.579 40.909 10.51 0.00 0.00 2.01
153 154 4.129380 AGGGTTGTACAAAGTCGGTTTAC 58.871 43.478 10.51 0.00 0.00 2.01
154 155 3.876320 GGGTTGTACAAAGTCGGTTTACA 59.124 43.478 10.51 0.00 0.00 2.41
155 156 4.335037 GGGTTGTACAAAGTCGGTTTACAA 59.665 41.667 10.51 0.00 28.35 2.41
156 157 5.504392 GGTTGTACAAAGTCGGTTTACAAG 58.496 41.667 10.51 0.00 30.58 3.16
157 158 5.294060 GGTTGTACAAAGTCGGTTTACAAGA 59.706 40.000 10.51 0.00 30.58 3.02
158 159 6.183360 GGTTGTACAAAGTCGGTTTACAAGAA 60.183 38.462 10.51 0.00 30.58 2.52
159 160 6.981762 TGTACAAAGTCGGTTTACAAGAAA 57.018 33.333 0.00 0.00 0.00 2.52
160 161 7.007313 TGTACAAAGTCGGTTTACAAGAAAG 57.993 36.000 0.00 0.00 0.00 2.62
161 162 5.494632 ACAAAGTCGGTTTACAAGAAAGG 57.505 39.130 0.00 0.00 0.00 3.11
162 163 5.187687 ACAAAGTCGGTTTACAAGAAAGGA 58.812 37.500 0.00 0.00 0.00 3.36
163 164 5.648960 ACAAAGTCGGTTTACAAGAAAGGAA 59.351 36.000 0.00 0.00 0.00 3.36
164 165 6.151480 ACAAAGTCGGTTTACAAGAAAGGAAA 59.849 34.615 0.00 0.00 0.00 3.13
165 166 5.746307 AGTCGGTTTACAAGAAAGGAAAC 57.254 39.130 0.00 0.00 0.00 2.78
166 167 5.187687 AGTCGGTTTACAAGAAAGGAAACA 58.812 37.500 4.41 0.00 34.22 2.83
167 168 5.296035 AGTCGGTTTACAAGAAAGGAAACAG 59.704 40.000 4.41 0.62 34.22 3.16
168 169 5.065602 GTCGGTTTACAAGAAAGGAAACAGT 59.934 40.000 4.41 0.00 34.22 3.55
169 170 6.258507 GTCGGTTTACAAGAAAGGAAACAGTA 59.741 38.462 4.41 0.00 34.22 2.74
170 171 6.993902 TCGGTTTACAAGAAAGGAAACAGTAT 59.006 34.615 4.41 0.00 34.22 2.12
171 172 8.149647 TCGGTTTACAAGAAAGGAAACAGTATA 58.850 33.333 4.41 0.00 34.22 1.47
172 173 8.943002 CGGTTTACAAGAAAGGAAACAGTATAT 58.057 33.333 4.41 0.00 34.22 0.86
175 176 8.712285 TTACAAGAAAGGAAACAGTATATCCG 57.288 34.615 0.00 0.00 38.31 4.18
176 177 6.113411 ACAAGAAAGGAAACAGTATATCCGG 58.887 40.000 0.00 0.00 38.31 5.14
177 178 6.070424 ACAAGAAAGGAAACAGTATATCCGGA 60.070 38.462 6.61 6.61 38.31 5.14
178 179 5.915175 AGAAAGGAAACAGTATATCCGGAC 58.085 41.667 6.12 0.00 38.31 4.79
179 180 5.424252 AGAAAGGAAACAGTATATCCGGACA 59.576 40.000 6.12 0.00 38.31 4.02
180 181 4.667519 AGGAAACAGTATATCCGGACAC 57.332 45.455 6.12 5.29 38.31 3.67
181 182 4.287552 AGGAAACAGTATATCCGGACACT 58.712 43.478 6.12 7.96 38.31 3.55
182 183 4.715297 AGGAAACAGTATATCCGGACACTT 59.285 41.667 6.12 0.00 38.31 3.16
183 184 5.895534 AGGAAACAGTATATCCGGACACTTA 59.104 40.000 6.12 0.00 38.31 2.24
184 185 6.381994 AGGAAACAGTATATCCGGACACTTAA 59.618 38.462 6.12 0.00 38.31 1.85
185 186 7.070821 AGGAAACAGTATATCCGGACACTTAAT 59.929 37.037 6.12 0.00 38.31 1.40
186 187 7.384387 GGAAACAGTATATCCGGACACTTAATC 59.616 40.741 6.12 7.83 0.00 1.75
187 188 7.598759 AACAGTATATCCGGACACTTAATCT 57.401 36.000 6.12 0.00 0.00 2.40
188 189 7.598759 ACAGTATATCCGGACACTTAATCTT 57.401 36.000 6.12 0.00 0.00 2.40
189 190 7.434492 ACAGTATATCCGGACACTTAATCTTG 58.566 38.462 6.12 0.56 0.00 3.02
190 191 6.366332 CAGTATATCCGGACACTTAATCTTGC 59.634 42.308 6.12 0.00 0.00 4.01
191 192 2.396590 TCCGGACACTTAATCTTGCC 57.603 50.000 0.00 0.00 0.00 4.52
192 193 1.006832 CCGGACACTTAATCTTGCCG 58.993 55.000 0.00 0.00 34.32 5.69
193 194 1.674817 CCGGACACTTAATCTTGCCGT 60.675 52.381 0.00 0.00 33.36 5.68
194 195 2.073816 CGGACACTTAATCTTGCCGTT 58.926 47.619 0.00 0.00 31.74 4.44
195 196 2.093783 CGGACACTTAATCTTGCCGTTC 59.906 50.000 0.00 0.00 31.74 3.95
196 197 3.071479 GGACACTTAATCTTGCCGTTCA 58.929 45.455 0.00 0.00 0.00 3.18
197 198 3.120304 GGACACTTAATCTTGCCGTTCAC 60.120 47.826 0.00 0.00 0.00 3.18
198 199 2.478894 ACACTTAATCTTGCCGTTCACG 59.521 45.455 0.00 0.00 39.44 4.35
199 200 1.463444 ACTTAATCTTGCCGTTCACGC 59.537 47.619 0.00 0.00 38.18 5.34
200 201 1.463056 CTTAATCTTGCCGTTCACGCA 59.537 47.619 0.00 0.00 38.18 5.24
201 202 1.732941 TAATCTTGCCGTTCACGCAT 58.267 45.000 0.00 0.00 38.18 4.73
202 203 1.732941 AATCTTGCCGTTCACGCATA 58.267 45.000 0.00 0.00 38.18 3.14
203 204 1.006832 ATCTTGCCGTTCACGCATAC 58.993 50.000 0.00 0.00 38.18 2.39
204 205 0.319986 TCTTGCCGTTCACGCATACA 60.320 50.000 0.00 0.00 38.18 2.29
205 206 0.515127 CTTGCCGTTCACGCATACAA 59.485 50.000 0.00 0.00 38.18 2.41
206 207 0.945099 TTGCCGTTCACGCATACAAA 59.055 45.000 0.00 0.00 38.18 2.83
207 208 0.945099 TGCCGTTCACGCATACAAAA 59.055 45.000 0.00 0.00 38.18 2.44
208 209 1.069568 TGCCGTTCACGCATACAAAAG 60.070 47.619 0.00 0.00 38.18 2.27
209 210 1.069500 GCCGTTCACGCATACAAAAGT 60.069 47.619 0.00 0.00 38.18 2.66
210 211 2.834689 CCGTTCACGCATACAAAAGTC 58.165 47.619 0.00 0.00 38.18 3.01
211 212 2.412325 CCGTTCACGCATACAAAAGTCC 60.412 50.000 0.00 0.00 38.18 3.85
212 213 2.412325 CGTTCACGCATACAAAAGTCCC 60.412 50.000 0.00 0.00 0.00 4.46
213 214 2.550606 GTTCACGCATACAAAAGTCCCA 59.449 45.455 0.00 0.00 0.00 4.37
214 215 2.852449 TCACGCATACAAAAGTCCCAA 58.148 42.857 0.00 0.00 0.00 4.12
215 216 2.550606 TCACGCATACAAAAGTCCCAAC 59.449 45.455 0.00 0.00 0.00 3.77
216 217 1.883926 ACGCATACAAAAGTCCCAACC 59.116 47.619 0.00 0.00 0.00 3.77
217 218 1.135803 CGCATACAAAAGTCCCAACCG 60.136 52.381 0.00 0.00 0.00 4.44
218 219 1.201414 GCATACAAAAGTCCCAACCGG 59.799 52.381 0.00 0.00 0.00 5.28
219 220 2.785562 CATACAAAAGTCCCAACCGGA 58.214 47.619 9.46 0.00 38.83 5.14
237 238 3.322466 CACGGGAGGTGGCCTTCT 61.322 66.667 3.32 0.19 43.16 2.85
238 239 2.529389 ACGGGAGGTGGCCTTCTT 60.529 61.111 3.32 0.00 31.76 2.52
239 240 2.269241 CGGGAGGTGGCCTTCTTC 59.731 66.667 3.32 3.08 31.76 2.87
240 241 2.677848 GGGAGGTGGCCTTCTTCC 59.322 66.667 16.92 16.92 31.76 3.46
241 242 1.925972 GGGAGGTGGCCTTCTTCCT 60.926 63.158 21.60 13.83 31.76 3.36
242 243 1.501654 GGGAGGTGGCCTTCTTCCTT 61.502 60.000 21.60 3.01 31.76 3.36
243 244 0.405973 GGAGGTGGCCTTCTTCCTTT 59.594 55.000 17.57 0.00 31.76 3.11
244 245 1.633945 GGAGGTGGCCTTCTTCCTTTA 59.366 52.381 17.57 0.00 31.76 1.85
245 246 2.242452 GGAGGTGGCCTTCTTCCTTTAT 59.758 50.000 17.57 0.00 31.76 1.40
246 247 3.546724 GAGGTGGCCTTCTTCCTTTATC 58.453 50.000 3.32 0.00 31.76 1.75
247 248 3.193782 AGGTGGCCTTCTTCCTTTATCT 58.806 45.455 3.32 0.00 0.00 1.98
248 249 3.201045 AGGTGGCCTTCTTCCTTTATCTC 59.799 47.826 3.32 0.00 0.00 2.75
249 250 3.198872 GTGGCCTTCTTCCTTTATCTCG 58.801 50.000 3.32 0.00 0.00 4.04
250 251 3.104512 TGGCCTTCTTCCTTTATCTCGA 58.895 45.455 3.32 0.00 0.00 4.04
251 252 3.118738 TGGCCTTCTTCCTTTATCTCGAC 60.119 47.826 3.32 0.00 0.00 4.20
252 253 3.118738 GGCCTTCTTCCTTTATCTCGACA 60.119 47.826 0.00 0.00 0.00 4.35
253 254 4.116238 GCCTTCTTCCTTTATCTCGACAG 58.884 47.826 0.00 0.00 0.00 3.51
254 255 4.116238 CCTTCTTCCTTTATCTCGACAGC 58.884 47.826 0.00 0.00 0.00 4.40
255 256 3.802948 TCTTCCTTTATCTCGACAGCC 57.197 47.619 0.00 0.00 0.00 4.85
256 257 2.431057 TCTTCCTTTATCTCGACAGCCC 59.569 50.000 0.00 0.00 0.00 5.19
257 258 1.860641 TCCTTTATCTCGACAGCCCA 58.139 50.000 0.00 0.00 0.00 5.36
258 259 2.398588 TCCTTTATCTCGACAGCCCAT 58.601 47.619 0.00 0.00 0.00 4.00
259 260 2.771943 TCCTTTATCTCGACAGCCCATT 59.228 45.455 0.00 0.00 0.00 3.16
260 261 3.964688 TCCTTTATCTCGACAGCCCATTA 59.035 43.478 0.00 0.00 0.00 1.90
261 262 4.039245 TCCTTTATCTCGACAGCCCATTAG 59.961 45.833 0.00 0.00 0.00 1.73
262 263 4.202264 CCTTTATCTCGACAGCCCATTAGT 60.202 45.833 0.00 0.00 0.00 2.24
263 264 4.585955 TTATCTCGACAGCCCATTAGTC 57.414 45.455 0.00 0.00 0.00 2.59
264 265 1.112113 TCTCGACAGCCCATTAGTCC 58.888 55.000 0.00 0.00 0.00 3.85
265 266 0.249073 CTCGACAGCCCATTAGTCCG 60.249 60.000 0.00 0.00 0.00 4.79
266 267 1.227263 CGACAGCCCATTAGTCCGG 60.227 63.158 0.00 0.00 0.00 5.14
267 268 1.523938 GACAGCCCATTAGTCCGGC 60.524 63.158 0.00 0.00 43.35 6.13
268 269 2.203209 CAGCCCATTAGTCCGGCC 60.203 66.667 0.00 0.00 44.13 6.13
269 270 3.489513 AGCCCATTAGTCCGGCCC 61.490 66.667 0.00 0.00 44.13 5.80
270 271 3.804329 GCCCATTAGTCCGGCCCA 61.804 66.667 0.00 0.00 36.63 5.36
271 272 3.133365 GCCCATTAGTCCGGCCCAT 62.133 63.158 0.00 0.00 36.63 4.00
272 273 1.774894 GCCCATTAGTCCGGCCCATA 61.775 60.000 0.00 0.00 36.63 2.74
273 274 0.991920 CCCATTAGTCCGGCCCATAT 59.008 55.000 0.00 0.00 0.00 1.78
274 275 1.354368 CCCATTAGTCCGGCCCATATT 59.646 52.381 0.00 0.00 0.00 1.28
275 276 2.436417 CCATTAGTCCGGCCCATATTG 58.564 52.381 0.00 0.00 0.00 1.90
276 277 2.039746 CCATTAGTCCGGCCCATATTGA 59.960 50.000 0.00 0.00 0.00 2.57
277 278 3.497763 CCATTAGTCCGGCCCATATTGAA 60.498 47.826 0.00 0.00 0.00 2.69
278 279 4.335416 CATTAGTCCGGCCCATATTGAAT 58.665 43.478 0.00 0.00 0.00 2.57
279 280 5.496556 CATTAGTCCGGCCCATATTGAATA 58.503 41.667 0.00 0.00 0.00 1.75
280 281 3.703001 AGTCCGGCCCATATTGAATAG 57.297 47.619 0.00 0.00 0.00 1.73
281 282 2.305927 AGTCCGGCCCATATTGAATAGG 59.694 50.000 0.00 0.00 0.00 2.57
282 283 2.039879 GTCCGGCCCATATTGAATAGGT 59.960 50.000 0.00 0.00 0.00 3.08
283 284 2.304761 TCCGGCCCATATTGAATAGGTC 59.695 50.000 0.00 0.00 0.00 3.85
284 285 2.346803 CGGCCCATATTGAATAGGTCG 58.653 52.381 0.00 3.59 39.61 4.79
285 286 2.711542 GGCCCATATTGAATAGGTCGG 58.288 52.381 0.00 0.00 0.00 4.79
286 287 2.304761 GGCCCATATTGAATAGGTCGGA 59.695 50.000 0.00 0.00 0.00 4.55
287 288 3.335579 GCCCATATTGAATAGGTCGGAC 58.664 50.000 0.00 0.00 0.00 4.79
288 289 3.585862 CCCATATTGAATAGGTCGGACG 58.414 50.000 1.43 0.00 0.00 4.79
289 290 2.993899 CCATATTGAATAGGTCGGACGC 59.006 50.000 1.43 0.00 0.00 5.19
290 291 2.806608 TATTGAATAGGTCGGACGCC 57.193 50.000 1.43 0.00 0.00 5.68
291 292 0.106149 ATTGAATAGGTCGGACGCCC 59.894 55.000 1.43 0.00 0.00 6.13
303 304 4.387343 ACGCCCGAGGACCCCTTA 62.387 66.667 0.00 0.00 31.76 2.69
304 305 3.537874 CGCCCGAGGACCCCTTAG 61.538 72.222 0.00 0.00 31.76 2.18
305 306 2.365237 GCCCGAGGACCCCTTAGT 60.365 66.667 0.00 0.00 31.76 2.24
306 307 2.433146 GCCCGAGGACCCCTTAGTC 61.433 68.421 0.00 0.00 31.76 2.59
313 314 3.713867 GACCCCTTAGTCCAGGACT 57.286 57.895 25.92 25.92 45.54 3.85
314 315 1.487300 GACCCCTTAGTCCAGGACTC 58.513 60.000 26.42 6.18 42.40 3.36
315 316 0.042881 ACCCCTTAGTCCAGGACTCC 59.957 60.000 26.42 0.00 42.40 3.85
316 317 0.691413 CCCCTTAGTCCAGGACTCCC 60.691 65.000 26.42 0.00 42.40 4.30
317 318 0.340208 CCCTTAGTCCAGGACTCCCT 59.660 60.000 26.42 4.72 42.40 4.20
318 319 1.689892 CCCTTAGTCCAGGACTCCCTC 60.690 61.905 26.42 0.00 42.40 4.30
319 320 1.007238 CCTTAGTCCAGGACTCCCTCA 59.993 57.143 26.42 5.02 42.40 3.86
434 435 5.184671 GGAGCTCCTCTGATTTTGATTTTGT 59.815 40.000 26.25 0.00 0.00 2.83
469 470 5.406477 TGTAGATTTGCTATGAGCTATTGCG 59.594 40.000 0.00 0.00 42.97 4.85
495 496 9.294030 GGATGTATGTTGTTTTCATCTTGATTC 57.706 33.333 0.00 0.00 36.27 2.52
517 524 4.276183 TCTCTACGAGGTGTTGCTCATATC 59.724 45.833 0.00 0.00 0.00 1.63
523 530 2.174210 AGGTGTTGCTCATATCTGGCAT 59.826 45.455 0.00 0.00 35.84 4.40
581 588 7.120579 CCAAGTATAAGTACAAGATTGTTGCCA 59.879 37.037 3.14 0.00 42.35 4.92
589 596 4.406456 ACAAGATTGTTGCCATCTGGTTA 58.594 39.130 0.00 0.00 38.47 2.85
602 609 8.565896 TGCCATCTGGTTAATATCATTGTATC 57.434 34.615 0.00 0.00 37.57 2.24
823 837 4.706962 GGGCATTACAGACTTTTTCCTGAT 59.293 41.667 0.00 0.00 34.65 2.90
833 847 4.526970 ACTTTTTCCTGATCATACGGCAT 58.473 39.130 0.00 0.00 0.00 4.40
838 852 8.684386 TTTTTCCTGATCATACGGCATATAAA 57.316 30.769 0.00 0.00 0.00 1.40
897 913 7.383843 GCTTATTATCTGAAGCTTACTCTCACC 59.616 40.741 0.00 0.00 43.84 4.02
907 923 3.568853 GCTTACTCTCACCGGAGCTTATA 59.431 47.826 9.46 0.00 41.13 0.98
941 2080 0.743345 ACGGGAGCTTATTTCCACGC 60.743 55.000 0.00 0.00 36.40 5.34
1255 2397 0.969917 GAGTCTGAGCTCCTCTGCCA 60.970 60.000 12.15 0.00 31.05 4.92
1406 2548 1.523938 GGTACAAGCAGATCCCGGC 60.524 63.158 0.00 0.00 0.00 6.13
1413 2555 4.147449 CAGATCCCGGCGCAGACA 62.147 66.667 10.83 0.00 27.25 3.41
1491 2633 2.815308 CTAGCTCCGGACGGCAAT 59.185 61.111 17.13 1.03 34.68 3.56
1512 2654 2.089980 CTCGTCCTCCTCCTAAACGAA 58.910 52.381 0.00 0.00 41.27 3.85
1715 2857 1.301716 TCGGGCTGAACAAGAGCAC 60.302 57.895 0.00 0.00 38.27 4.40
1740 2882 3.755628 TACCAGGCGCTCGTGTCC 61.756 66.667 7.64 0.00 0.00 4.02
1777 2919 2.986311 CCATCCACGGGATTGTACG 58.014 57.895 2.97 0.00 39.79 3.67
1783 2925 1.593265 ACGGGATTGTACGTGGACC 59.407 57.895 0.00 0.00 42.39 4.46
1905 3047 2.190313 GAGATGGGCATGTCGGCA 59.810 61.111 0.00 0.00 43.60 5.69
1947 3089 0.822532 ACAACGACGAGGAGGTCAGT 60.823 55.000 0.00 0.00 36.73 3.41
1983 3125 0.490017 TCAACCCCTCTACCCTGTCA 59.510 55.000 0.00 0.00 0.00 3.58
2022 3164 2.693762 CGGGCAGCTCACCATGTTG 61.694 63.158 4.72 0.00 0.00 3.33
2269 3411 1.904287 TCCGGTGGAAAATGTCAAGG 58.096 50.000 0.00 0.00 0.00 3.61
2303 3454 0.614979 TTCTCCGAGGCAGGTAGCTT 60.615 55.000 0.00 0.00 44.79 3.74
2413 3567 1.271597 GGAACATTCAGCAGGTCACCT 60.272 52.381 0.00 0.00 0.00 4.00
2520 3674 0.736636 ATGAACGCGACGTCATCCTA 59.263 50.000 15.93 0.00 39.99 2.94
2673 3827 1.766496 ACGGACAACTTCTCCCAGAAA 59.234 47.619 0.00 0.00 33.19 2.52
2810 3984 3.083997 GGTGAGGACCCTCGGCAT 61.084 66.667 11.11 0.00 45.48 4.40
3428 4623 1.153489 GCATTCAGCAGAGCGAGGA 60.153 57.895 0.00 0.00 44.79 3.71
3564 4759 2.432146 CTGAAGAGGACCCAATCGATGA 59.568 50.000 0.00 0.00 0.00 2.92
3640 4838 0.319813 GCCAACAAGCGCCAAATTCT 60.320 50.000 2.29 0.00 0.00 2.40
3650 4848 3.314635 AGCGCCAAATTCTCATTCATCTC 59.685 43.478 2.29 0.00 0.00 2.75
3672 4870 2.076863 GGAGCAAAGTACAGCGTGAAT 58.923 47.619 0.00 0.00 35.48 2.57
3674 4872 3.682858 GGAGCAAAGTACAGCGTGAATTA 59.317 43.478 0.00 0.00 35.48 1.40
3788 4986 9.660180 ATTCTATTCTTTAGTTGAGAACCTGAC 57.340 33.333 0.00 0.00 36.08 3.51
3789 4987 7.313646 TCTATTCTTTAGTTGAGAACCTGACG 58.686 38.462 0.00 0.00 36.08 4.35
3800 4998 1.978455 AACCTGACGAGCACAACCCA 61.978 55.000 0.00 0.00 0.00 4.51
3817 5015 1.832998 CCCAATTGATGTTTCTGGGGG 59.167 52.381 7.12 0.00 42.68 5.40
3821 5019 1.993956 TTGATGTTTCTGGGGGTGTG 58.006 50.000 0.00 0.00 0.00 3.82
3822 5020 1.144691 TGATGTTTCTGGGGGTGTGA 58.855 50.000 0.00 0.00 0.00 3.58
3823 5021 1.710244 TGATGTTTCTGGGGGTGTGAT 59.290 47.619 0.00 0.00 0.00 3.06
3824 5022 2.916269 TGATGTTTCTGGGGGTGTGATA 59.084 45.455 0.00 0.00 0.00 2.15
3825 5023 3.332187 TGATGTTTCTGGGGGTGTGATAA 59.668 43.478 0.00 0.00 0.00 1.75
3826 5024 3.885976 TGTTTCTGGGGGTGTGATAAA 57.114 42.857 0.00 0.00 0.00 1.40
3827 5025 3.492337 TGTTTCTGGGGGTGTGATAAAC 58.508 45.455 0.00 0.00 0.00 2.01
3828 5026 3.117474 TGTTTCTGGGGGTGTGATAAACA 60.117 43.478 0.00 0.00 34.12 2.83
3829 5027 3.885976 TTCTGGGGGTGTGATAAACAA 57.114 42.857 0.00 0.00 41.57 2.83
3830 5028 3.149005 TCTGGGGGTGTGATAAACAAC 57.851 47.619 0.00 0.00 46.59 3.32
3841 5039 8.728088 GGTGTGATAAACAACATTTAGACAAG 57.272 34.615 0.00 0.00 46.55 3.16
3842 5040 8.564574 GGTGTGATAAACAACATTTAGACAAGA 58.435 33.333 0.00 0.00 46.55 3.02
3859 5057 3.758554 ACAAGATGTGTCCTGCATAAACC 59.241 43.478 0.00 0.00 34.38 3.27
3860 5058 4.012374 CAAGATGTGTCCTGCATAAACCT 58.988 43.478 0.00 0.00 0.00 3.50
3861 5059 5.185454 CAAGATGTGTCCTGCATAAACCTA 58.815 41.667 0.00 0.00 0.00 3.08
3862 5060 4.770795 AGATGTGTCCTGCATAAACCTAC 58.229 43.478 0.00 0.00 0.00 3.18
3863 5061 4.225042 AGATGTGTCCTGCATAAACCTACA 59.775 41.667 0.00 0.00 0.00 2.74
3864 5062 3.937814 TGTGTCCTGCATAAACCTACAG 58.062 45.455 0.00 0.00 0.00 2.74
3865 5063 3.580895 TGTGTCCTGCATAAACCTACAGA 59.419 43.478 0.00 0.00 31.67 3.41
3866 5064 4.041075 TGTGTCCTGCATAAACCTACAGAA 59.959 41.667 0.00 0.00 31.67 3.02
3867 5065 5.001232 GTGTCCTGCATAAACCTACAGAAA 58.999 41.667 0.00 0.00 31.67 2.52
3868 5066 5.122396 GTGTCCTGCATAAACCTACAGAAAG 59.878 44.000 0.00 0.00 31.67 2.62
3869 5067 4.636206 GTCCTGCATAAACCTACAGAAAGG 59.364 45.833 0.00 0.00 42.82 3.11
3870 5068 3.947834 CCTGCATAAACCTACAGAAAGGG 59.052 47.826 0.00 0.00 41.32 3.95
3871 5069 4.567747 CCTGCATAAACCTACAGAAAGGGT 60.568 45.833 0.00 0.00 41.32 4.34
3873 5071 4.764823 TGCATAAACCTACAGAAAGGGTTG 59.235 41.667 3.43 0.00 46.29 3.77
3874 5072 4.380550 GCATAAACCTACAGAAAGGGTTGC 60.381 45.833 3.43 0.00 46.29 4.17
3875 5073 1.892209 AACCTACAGAAAGGGTTGCG 58.108 50.000 0.00 0.00 41.18 4.85
3876 5074 1.053424 ACCTACAGAAAGGGTTGCGA 58.947 50.000 0.00 0.00 41.32 5.10
3877 5075 1.270678 ACCTACAGAAAGGGTTGCGAC 60.271 52.381 0.00 0.00 41.32 5.19
3878 5076 1.270625 CCTACAGAAAGGGTTGCGACA 60.271 52.381 6.39 0.00 32.55 4.35
3879 5077 2.615493 CCTACAGAAAGGGTTGCGACAT 60.615 50.000 6.39 0.00 32.55 3.06
3880 5078 1.523758 ACAGAAAGGGTTGCGACATC 58.476 50.000 6.39 0.00 0.00 3.06
3881 5079 1.072331 ACAGAAAGGGTTGCGACATCT 59.928 47.619 6.39 0.00 0.00 2.90
3921 5119 1.542679 GATCTCGGGTAGGGGGTCT 59.457 63.158 0.00 0.00 0.00 3.85
4000 5198 1.048724 TTCGGGCCTTCTCGATGGAT 61.049 55.000 0.84 0.00 35.25 3.41
4094 5292 2.834113 AGAGGCTAAACCCTAGAAGCA 58.166 47.619 0.00 0.00 40.58 3.91
4116 5314 7.006509 AGCAAGCCTATGGTATGATTGTTATT 58.993 34.615 0.00 0.00 0.00 1.40
4248 5452 0.832135 TTCCACGCCAAGGAGAGTCT 60.832 55.000 0.00 0.00 36.33 3.24
4303 5507 5.719563 TGTATCTTCATAGTCCAACAGTCCA 59.280 40.000 0.00 0.00 0.00 4.02
4320 5524 5.900123 ACAGTCCAGCCAAAGTATATAGTCT 59.100 40.000 0.00 0.00 0.00 3.24
4370 5574 0.343372 TCCCTCAGTAGCCCCTGAAT 59.657 55.000 4.66 0.00 40.78 2.57
4408 5612 1.808390 GTCCGGCGCGTAGATTGTT 60.808 57.895 8.43 0.00 0.00 2.83
4418 5622 3.242155 CGCGTAGATTGTTTTCGGCATTA 60.242 43.478 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.133483 AGATCAACTCTTGTAACCCCTATACT 58.867 38.462 0.00 0.00 0.00 2.12
3 4 7.508296 GGTAGATCAACTCTTGTAACCCCTATA 59.492 40.741 0.00 0.00 35.28 1.31
4 5 6.326843 GGTAGATCAACTCTTGTAACCCCTAT 59.673 42.308 0.00 0.00 35.28 2.57
5 6 5.659971 GGTAGATCAACTCTTGTAACCCCTA 59.340 44.000 0.00 0.00 35.28 3.53
6 7 4.470304 GGTAGATCAACTCTTGTAACCCCT 59.530 45.833 0.00 0.00 35.28 4.79
10 11 6.093771 TCTCGAGGTAGATCAACTCTTGTAAC 59.906 42.308 13.56 0.00 35.28 2.50
11 12 6.178324 TCTCGAGGTAGATCAACTCTTGTAA 58.822 40.000 13.56 0.00 35.28 2.41
12 13 5.742063 TCTCGAGGTAGATCAACTCTTGTA 58.258 41.667 13.56 0.00 35.28 2.41
13 14 4.590918 TCTCGAGGTAGATCAACTCTTGT 58.409 43.478 13.56 0.00 35.28 3.16
14 15 5.766150 ATCTCGAGGTAGATCAACTCTTG 57.234 43.478 13.56 0.00 35.28 3.02
22 23 4.437659 GCCATTACGATCTCGAGGTAGATC 60.438 50.000 13.13 7.50 45.64 2.75
23 24 3.440872 GCCATTACGATCTCGAGGTAGAT 59.559 47.826 13.13 0.00 43.02 1.98
24 25 2.812591 GCCATTACGATCTCGAGGTAGA 59.187 50.000 13.13 0.00 43.02 2.59
25 26 2.814919 AGCCATTACGATCTCGAGGTAG 59.185 50.000 13.56 8.65 43.02 3.18
26 27 2.860009 AGCCATTACGATCTCGAGGTA 58.140 47.619 13.56 4.20 43.02 3.08
27 28 1.693627 AGCCATTACGATCTCGAGGT 58.306 50.000 13.56 4.76 43.02 3.85
28 29 3.917329 TTAGCCATTACGATCTCGAGG 57.083 47.619 13.56 0.00 43.02 4.63
29 30 3.982058 GGTTTAGCCATTACGATCTCGAG 59.018 47.826 5.93 5.93 38.95 4.04
30 31 3.243636 GGGTTTAGCCATTACGATCTCGA 60.244 47.826 6.60 0.00 40.13 4.04
31 32 3.057734 GGGTTTAGCCATTACGATCTCG 58.942 50.000 0.00 0.00 41.74 4.04
32 33 4.338379 AGGGTTTAGCCATTACGATCTC 57.662 45.455 0.26 0.00 39.65 2.75
33 34 5.145564 TCTAGGGTTTAGCCATTACGATCT 58.854 41.667 0.26 0.00 39.65 2.75
34 35 5.464030 TCTAGGGTTTAGCCATTACGATC 57.536 43.478 0.26 0.00 39.65 3.69
35 36 6.183361 ACAATCTAGGGTTTAGCCATTACGAT 60.183 38.462 0.26 0.00 39.65 3.73
36 37 5.129815 ACAATCTAGGGTTTAGCCATTACGA 59.870 40.000 0.26 0.00 39.65 3.43
37 38 5.365619 ACAATCTAGGGTTTAGCCATTACG 58.634 41.667 0.26 0.00 39.65 3.18
38 39 9.654663 CTATACAATCTAGGGTTTAGCCATTAC 57.345 37.037 0.26 0.00 39.65 1.89
39 40 8.319146 GCTATACAATCTAGGGTTTAGCCATTA 58.681 37.037 15.06 0.00 38.09 1.90
40 41 7.168905 GCTATACAATCTAGGGTTTAGCCATT 58.831 38.462 15.06 0.00 38.09 3.16
41 42 6.712276 GCTATACAATCTAGGGTTTAGCCAT 58.288 40.000 15.06 0.00 38.09 4.40
42 43 6.110411 GCTATACAATCTAGGGTTTAGCCA 57.890 41.667 15.06 0.00 38.09 4.75
44 45 6.361768 AGGCTATACAATCTAGGGTTTAGC 57.638 41.667 16.45 16.45 41.10 3.09
45 46 9.256228 TCATAGGCTATACAATCTAGGGTTTAG 57.744 37.037 6.72 0.00 0.00 1.85
46 47 9.610104 TTCATAGGCTATACAATCTAGGGTTTA 57.390 33.333 6.72 0.00 0.00 2.01
47 48 8.506196 TTCATAGGCTATACAATCTAGGGTTT 57.494 34.615 6.72 0.00 0.00 3.27
48 49 8.543774 CATTCATAGGCTATACAATCTAGGGTT 58.456 37.037 6.72 0.00 0.00 4.11
49 50 7.680310 ACATTCATAGGCTATACAATCTAGGGT 59.320 37.037 6.72 0.82 0.00 4.34
50 51 8.083828 ACATTCATAGGCTATACAATCTAGGG 57.916 38.462 6.72 0.27 0.00 3.53
57 58 9.890629 GGATCATAACATTCATAGGCTATACAA 57.109 33.333 6.72 3.73 0.00 2.41
58 59 8.486210 GGGATCATAACATTCATAGGCTATACA 58.514 37.037 6.72 0.00 0.00 2.29
59 60 7.934120 GGGGATCATAACATTCATAGGCTATAC 59.066 40.741 6.72 0.00 0.00 1.47
60 61 7.851451 AGGGGATCATAACATTCATAGGCTATA 59.149 37.037 6.72 0.00 0.00 1.31
61 62 6.680197 AGGGGATCATAACATTCATAGGCTAT 59.320 38.462 0.00 0.00 0.00 2.97
62 63 6.032039 AGGGGATCATAACATTCATAGGCTA 58.968 40.000 0.00 0.00 0.00 3.93
63 64 4.854436 AGGGGATCATAACATTCATAGGCT 59.146 41.667 0.00 0.00 0.00 4.58
64 65 5.045286 AGAGGGGATCATAACATTCATAGGC 60.045 44.000 0.00 0.00 0.00 3.93
65 66 6.352565 GGAGAGGGGATCATAACATTCATAGG 60.353 46.154 0.00 0.00 0.00 2.57
66 67 6.629068 CGGAGAGGGGATCATAACATTCATAG 60.629 46.154 0.00 0.00 0.00 2.23
67 68 5.187772 CGGAGAGGGGATCATAACATTCATA 59.812 44.000 0.00 0.00 0.00 2.15
68 69 4.019860 CGGAGAGGGGATCATAACATTCAT 60.020 45.833 0.00 0.00 0.00 2.57
69 70 3.324846 CGGAGAGGGGATCATAACATTCA 59.675 47.826 0.00 0.00 0.00 2.57
70 71 3.307059 CCGGAGAGGGGATCATAACATTC 60.307 52.174 0.00 0.00 35.97 2.67
71 72 2.639839 CCGGAGAGGGGATCATAACATT 59.360 50.000 0.00 0.00 35.97 2.71
72 73 2.260822 CCGGAGAGGGGATCATAACAT 58.739 52.381 0.00 0.00 35.97 2.71
73 74 1.062428 ACCGGAGAGGGGATCATAACA 60.062 52.381 9.46 0.00 46.96 2.41
74 75 1.619332 GACCGGAGAGGGGATCATAAC 59.381 57.143 9.46 0.00 46.96 1.89
75 76 1.503784 AGACCGGAGAGGGGATCATAA 59.496 52.381 9.46 0.00 46.96 1.90
76 77 1.158904 AGACCGGAGAGGGGATCATA 58.841 55.000 9.46 0.00 46.96 2.15
77 78 1.158904 TAGACCGGAGAGGGGATCAT 58.841 55.000 9.46 0.00 46.96 2.45
78 79 0.931468 TTAGACCGGAGAGGGGATCA 59.069 55.000 9.46 0.00 46.96 2.92
79 80 1.623163 CTTAGACCGGAGAGGGGATC 58.377 60.000 9.46 0.00 46.96 3.36
80 81 0.470268 GCTTAGACCGGAGAGGGGAT 60.470 60.000 9.46 0.00 46.96 3.85
81 82 1.076192 GCTTAGACCGGAGAGGGGA 60.076 63.158 9.46 0.00 46.96 4.81
82 83 2.134933 GGCTTAGACCGGAGAGGGG 61.135 68.421 9.46 0.00 46.96 4.79
83 84 2.134933 GGGCTTAGACCGGAGAGGG 61.135 68.421 9.46 0.00 46.96 4.30
85 86 1.110518 GGAGGGCTTAGACCGGAGAG 61.111 65.000 9.46 0.62 34.63 3.20
86 87 1.076192 GGAGGGCTTAGACCGGAGA 60.076 63.158 9.46 0.00 34.63 3.71
87 88 2.491022 CGGAGGGCTTAGACCGGAG 61.491 68.421 9.46 0.00 41.41 4.63
88 89 2.441532 CGGAGGGCTTAGACCGGA 60.442 66.667 9.46 0.00 41.41 5.14
105 106 3.260128 CCCCTCCGGTGTCTATATAAACC 59.740 52.174 0.00 0.68 0.00 3.27
106 107 3.306571 GCCCCTCCGGTGTCTATATAAAC 60.307 52.174 0.00 0.00 0.00 2.01
107 108 2.901839 GCCCCTCCGGTGTCTATATAAA 59.098 50.000 0.00 0.00 0.00 1.40
108 109 2.532843 GCCCCTCCGGTGTCTATATAA 58.467 52.381 0.00 0.00 0.00 0.98
109 110 1.272872 GGCCCCTCCGGTGTCTATATA 60.273 57.143 0.00 0.00 0.00 0.86
110 111 0.544595 GGCCCCTCCGGTGTCTATAT 60.545 60.000 0.00 0.00 0.00 0.86
111 112 1.152398 GGCCCCTCCGGTGTCTATA 60.152 63.158 0.00 0.00 0.00 1.31
112 113 1.661990 TAGGCCCCTCCGGTGTCTAT 61.662 60.000 0.00 0.00 40.77 1.98
113 114 2.294170 CTAGGCCCCTCCGGTGTCTA 62.294 65.000 0.00 0.00 40.77 2.59
114 115 3.680196 TAGGCCCCTCCGGTGTCT 61.680 66.667 0.00 0.00 40.77 3.41
115 116 3.155167 CTAGGCCCCTCCGGTGTC 61.155 72.222 0.00 0.00 40.77 3.67
116 117 4.798682 CCTAGGCCCCTCCGGTGT 62.799 72.222 0.00 0.00 40.77 4.16
119 120 4.817909 AACCCTAGGCCCCTCCGG 62.818 72.222 2.05 0.00 40.77 5.14
120 121 2.884179 TACAACCCTAGGCCCCTCCG 62.884 65.000 2.05 0.00 40.77 4.63
121 122 1.003835 TACAACCCTAGGCCCCTCC 59.996 63.158 2.05 0.00 0.00 4.30
122 123 0.619543 TGTACAACCCTAGGCCCCTC 60.620 60.000 2.05 0.00 0.00 4.30
123 124 0.178855 TTGTACAACCCTAGGCCCCT 60.179 55.000 3.59 0.00 0.00 4.79
124 125 0.699981 TTTGTACAACCCTAGGCCCC 59.300 55.000 8.07 0.00 0.00 5.80
125 126 1.353358 ACTTTGTACAACCCTAGGCCC 59.647 52.381 8.07 0.00 0.00 5.80
126 127 2.708051 GACTTTGTACAACCCTAGGCC 58.292 52.381 8.07 0.00 0.00 5.19
127 128 2.344025 CGACTTTGTACAACCCTAGGC 58.656 52.381 8.07 4.20 0.00 3.93
128 129 2.301009 ACCGACTTTGTACAACCCTAGG 59.699 50.000 8.07 10.70 0.00 3.02
129 130 3.672767 ACCGACTTTGTACAACCCTAG 57.327 47.619 8.07 5.62 0.00 3.02
130 131 4.420522 AAACCGACTTTGTACAACCCTA 57.579 40.909 8.07 0.00 0.00 3.53
131 132 3.286329 AAACCGACTTTGTACAACCCT 57.714 42.857 8.07 0.00 0.00 4.34
132 133 3.876320 TGTAAACCGACTTTGTACAACCC 59.124 43.478 8.07 0.00 0.00 4.11
133 134 5.294060 TCTTGTAAACCGACTTTGTACAACC 59.706 40.000 8.07 0.00 0.00 3.77
134 135 6.348621 TCTTGTAAACCGACTTTGTACAAC 57.651 37.500 8.07 0.00 0.00 3.32
135 136 6.981762 TTCTTGTAAACCGACTTTGTACAA 57.018 33.333 3.59 3.59 0.00 2.41
136 137 6.037391 CCTTTCTTGTAAACCGACTTTGTACA 59.963 38.462 0.00 0.00 0.00 2.90
137 138 6.258507 TCCTTTCTTGTAAACCGACTTTGTAC 59.741 38.462 0.00 0.00 0.00 2.90
138 139 6.347696 TCCTTTCTTGTAAACCGACTTTGTA 58.652 36.000 0.00 0.00 0.00 2.41
139 140 5.187687 TCCTTTCTTGTAAACCGACTTTGT 58.812 37.500 0.00 0.00 0.00 2.83
140 141 5.744666 TCCTTTCTTGTAAACCGACTTTG 57.255 39.130 0.00 0.00 0.00 2.77
141 142 6.151480 TGTTTCCTTTCTTGTAAACCGACTTT 59.849 34.615 0.00 0.00 32.18 2.66
142 143 5.648960 TGTTTCCTTTCTTGTAAACCGACTT 59.351 36.000 0.00 0.00 32.18 3.01
143 144 5.187687 TGTTTCCTTTCTTGTAAACCGACT 58.812 37.500 0.00 0.00 32.18 4.18
144 145 5.065602 ACTGTTTCCTTTCTTGTAAACCGAC 59.934 40.000 0.00 0.00 32.18 4.79
145 146 5.187687 ACTGTTTCCTTTCTTGTAAACCGA 58.812 37.500 0.00 0.00 32.18 4.69
146 147 5.494632 ACTGTTTCCTTTCTTGTAAACCG 57.505 39.130 0.00 0.00 32.18 4.44
149 150 9.158233 CGGATATACTGTTTCCTTTCTTGTAAA 57.842 33.333 0.00 0.00 0.00 2.01
150 151 7.767198 CCGGATATACTGTTTCCTTTCTTGTAA 59.233 37.037 0.00 0.00 0.00 2.41
151 152 7.124599 TCCGGATATACTGTTTCCTTTCTTGTA 59.875 37.037 0.00 0.00 0.00 2.41
152 153 6.070424 TCCGGATATACTGTTTCCTTTCTTGT 60.070 38.462 0.00 0.00 0.00 3.16
153 154 6.258068 GTCCGGATATACTGTTTCCTTTCTTG 59.742 42.308 7.81 0.00 0.00 3.02
154 155 6.070424 TGTCCGGATATACTGTTTCCTTTCTT 60.070 38.462 7.81 0.00 0.00 2.52
155 156 5.424252 TGTCCGGATATACTGTTTCCTTTCT 59.576 40.000 7.81 0.00 0.00 2.52
156 157 5.522824 GTGTCCGGATATACTGTTTCCTTTC 59.477 44.000 7.81 0.00 0.00 2.62
157 158 5.189145 AGTGTCCGGATATACTGTTTCCTTT 59.811 40.000 7.81 0.00 0.00 3.11
158 159 4.715297 AGTGTCCGGATATACTGTTTCCTT 59.285 41.667 7.81 0.00 0.00 3.36
159 160 4.287552 AGTGTCCGGATATACTGTTTCCT 58.712 43.478 7.81 0.00 0.00 3.36
160 161 4.667519 AGTGTCCGGATATACTGTTTCC 57.332 45.455 7.81 0.00 0.00 3.13
161 162 8.142551 AGATTAAGTGTCCGGATATACTGTTTC 58.857 37.037 7.81 10.13 0.00 2.78
162 163 8.019656 AGATTAAGTGTCCGGATATACTGTTT 57.980 34.615 7.81 1.18 0.00 2.83
163 164 7.598759 AGATTAAGTGTCCGGATATACTGTT 57.401 36.000 7.81 1.89 0.00 3.16
164 165 7.434492 CAAGATTAAGTGTCCGGATATACTGT 58.566 38.462 7.81 6.86 0.00 3.55
165 166 6.366332 GCAAGATTAAGTGTCCGGATATACTG 59.634 42.308 7.81 1.81 0.00 2.74
166 167 6.456501 GCAAGATTAAGTGTCCGGATATACT 58.543 40.000 7.81 10.37 0.00 2.12
167 168 5.638234 GGCAAGATTAAGTGTCCGGATATAC 59.362 44.000 7.81 7.95 0.00 1.47
168 169 5.566032 CGGCAAGATTAAGTGTCCGGATATA 60.566 44.000 7.81 0.00 33.58 0.86
169 170 4.642429 GGCAAGATTAAGTGTCCGGATAT 58.358 43.478 7.81 0.00 0.00 1.63
170 171 3.491964 CGGCAAGATTAAGTGTCCGGATA 60.492 47.826 7.81 0.10 33.58 2.59
171 172 2.741878 CGGCAAGATTAAGTGTCCGGAT 60.742 50.000 7.81 0.00 33.58 4.18
172 173 1.404986 CGGCAAGATTAAGTGTCCGGA 60.405 52.381 0.00 0.00 33.58 5.14
173 174 1.006832 CGGCAAGATTAAGTGTCCGG 58.993 55.000 0.00 0.00 33.58 5.14
174 175 1.722011 ACGGCAAGATTAAGTGTCCG 58.278 50.000 13.07 13.07 39.08 4.79
175 176 3.071479 TGAACGGCAAGATTAAGTGTCC 58.929 45.455 0.00 0.00 0.00 4.02
176 177 3.423123 CGTGAACGGCAAGATTAAGTGTC 60.423 47.826 0.00 0.00 35.37 3.67
177 178 2.478894 CGTGAACGGCAAGATTAAGTGT 59.521 45.455 0.00 0.00 35.37 3.55
178 179 2.724839 GCGTGAACGGCAAGATTAAGTG 60.725 50.000 4.84 0.00 40.23 3.16
179 180 1.463444 GCGTGAACGGCAAGATTAAGT 59.537 47.619 4.84 0.00 40.23 2.24
180 181 1.463056 TGCGTGAACGGCAAGATTAAG 59.537 47.619 4.84 0.00 40.23 1.85
181 182 1.514003 TGCGTGAACGGCAAGATTAA 58.486 45.000 4.84 0.00 40.23 1.40
182 183 1.732941 ATGCGTGAACGGCAAGATTA 58.267 45.000 4.84 0.00 40.23 1.75
183 184 1.396996 GTATGCGTGAACGGCAAGATT 59.603 47.619 4.84 0.00 40.23 2.40
184 185 1.006832 GTATGCGTGAACGGCAAGAT 58.993 50.000 4.84 0.00 40.23 2.40
185 186 0.319986 TGTATGCGTGAACGGCAAGA 60.320 50.000 4.84 0.00 40.23 3.02
186 187 0.515127 TTGTATGCGTGAACGGCAAG 59.485 50.000 4.84 0.00 40.23 4.01
187 188 0.945099 TTTGTATGCGTGAACGGCAA 59.055 45.000 4.84 0.00 40.23 4.52
188 189 0.945099 TTTTGTATGCGTGAACGGCA 59.055 45.000 4.84 3.92 40.23 5.69
189 190 1.069500 ACTTTTGTATGCGTGAACGGC 60.069 47.619 4.84 0.00 40.23 5.68
190 191 2.412325 GGACTTTTGTATGCGTGAACGG 60.412 50.000 4.84 0.00 40.23 4.44
191 192 2.412325 GGGACTTTTGTATGCGTGAACG 60.412 50.000 0.00 0.00 43.27 3.95
192 193 2.550606 TGGGACTTTTGTATGCGTGAAC 59.449 45.455 0.00 0.00 0.00 3.18
193 194 2.852449 TGGGACTTTTGTATGCGTGAA 58.148 42.857 0.00 0.00 0.00 3.18
194 195 2.550606 GTTGGGACTTTTGTATGCGTGA 59.449 45.455 0.00 0.00 0.00 4.35
195 196 2.351350 GGTTGGGACTTTTGTATGCGTG 60.351 50.000 0.00 0.00 0.00 5.34
196 197 1.883926 GGTTGGGACTTTTGTATGCGT 59.116 47.619 0.00 0.00 0.00 5.24
197 198 1.135803 CGGTTGGGACTTTTGTATGCG 60.136 52.381 0.00 0.00 0.00 4.73
198 199 1.201414 CCGGTTGGGACTTTTGTATGC 59.799 52.381 0.00 0.00 38.47 3.14
199 200 2.785562 TCCGGTTGGGACTTTTGTATG 58.214 47.619 0.00 0.00 40.94 2.39
218 219 3.607370 GAAGGCCACCTCCCGTGTC 62.607 68.421 5.01 0.00 41.26 3.67
219 220 3.637273 GAAGGCCACCTCCCGTGT 61.637 66.667 5.01 0.00 41.26 4.49
220 221 2.804828 GAAGAAGGCCACCTCCCGTG 62.805 65.000 5.01 0.00 42.62 4.94
221 222 2.529389 AAGAAGGCCACCTCCCGT 60.529 61.111 5.01 0.00 30.89 5.28
222 223 2.269241 GAAGAAGGCCACCTCCCG 59.731 66.667 5.01 0.00 30.89 5.14
223 224 1.501654 AAGGAAGAAGGCCACCTCCC 61.502 60.000 5.01 0.00 30.89 4.30
224 225 0.405973 AAAGGAAGAAGGCCACCTCC 59.594 55.000 5.01 7.53 30.89 4.30
225 226 3.201045 AGATAAAGGAAGAAGGCCACCTC 59.799 47.826 5.01 0.00 30.89 3.85
226 227 3.193782 AGATAAAGGAAGAAGGCCACCT 58.806 45.455 5.01 2.32 33.87 4.00
227 228 3.546724 GAGATAAAGGAAGAAGGCCACC 58.453 50.000 5.01 0.00 0.00 4.61
228 229 3.118738 TCGAGATAAAGGAAGAAGGCCAC 60.119 47.826 5.01 0.00 0.00 5.01
229 230 3.104512 TCGAGATAAAGGAAGAAGGCCA 58.895 45.455 5.01 0.00 0.00 5.36
230 231 3.118738 TGTCGAGATAAAGGAAGAAGGCC 60.119 47.826 0.00 0.00 0.00 5.19
231 232 4.116238 CTGTCGAGATAAAGGAAGAAGGC 58.884 47.826 0.00 0.00 0.00 4.35
232 233 4.116238 GCTGTCGAGATAAAGGAAGAAGG 58.884 47.826 0.00 0.00 0.00 3.46
233 234 4.116238 GGCTGTCGAGATAAAGGAAGAAG 58.884 47.826 0.00 0.00 0.00 2.85
234 235 3.118738 GGGCTGTCGAGATAAAGGAAGAA 60.119 47.826 0.00 0.00 0.00 2.52
235 236 2.431057 GGGCTGTCGAGATAAAGGAAGA 59.569 50.000 0.00 0.00 0.00 2.87
236 237 2.168521 TGGGCTGTCGAGATAAAGGAAG 59.831 50.000 0.00 0.00 0.00 3.46
237 238 2.184533 TGGGCTGTCGAGATAAAGGAA 58.815 47.619 0.00 0.00 0.00 3.36
238 239 1.860641 TGGGCTGTCGAGATAAAGGA 58.139 50.000 0.00 0.00 0.00 3.36
239 240 2.918712 ATGGGCTGTCGAGATAAAGG 57.081 50.000 0.00 0.00 0.00 3.11
240 241 4.950050 ACTAATGGGCTGTCGAGATAAAG 58.050 43.478 0.00 0.00 0.00 1.85
241 242 4.202223 GGACTAATGGGCTGTCGAGATAAA 60.202 45.833 0.00 0.00 0.00 1.40
242 243 3.321111 GGACTAATGGGCTGTCGAGATAA 59.679 47.826 0.00 0.00 0.00 1.75
243 244 2.891580 GGACTAATGGGCTGTCGAGATA 59.108 50.000 0.00 0.00 0.00 1.98
244 245 1.689273 GGACTAATGGGCTGTCGAGAT 59.311 52.381 0.00 0.00 0.00 2.75
245 246 1.112113 GGACTAATGGGCTGTCGAGA 58.888 55.000 0.00 0.00 0.00 4.04
246 247 0.249073 CGGACTAATGGGCTGTCGAG 60.249 60.000 0.00 0.00 0.00 4.04
247 248 1.672854 CCGGACTAATGGGCTGTCGA 61.673 60.000 0.00 0.00 0.00 4.20
248 249 1.227263 CCGGACTAATGGGCTGTCG 60.227 63.158 0.00 0.00 0.00 4.35
249 250 1.523938 GCCGGACTAATGGGCTGTC 60.524 63.158 5.05 0.00 43.52 3.51
250 251 2.590092 GCCGGACTAATGGGCTGT 59.410 61.111 5.05 0.00 43.52 4.40
251 252 2.203209 GGCCGGACTAATGGGCTG 60.203 66.667 5.05 0.00 46.62 4.85
254 255 0.991920 ATATGGGCCGGACTAATGGG 59.008 55.000 7.57 0.00 0.00 4.00
255 256 2.039746 TCAATATGGGCCGGACTAATGG 59.960 50.000 7.57 0.00 0.00 3.16
256 257 3.417069 TCAATATGGGCCGGACTAATG 57.583 47.619 7.57 2.17 0.00 1.90
257 258 4.657814 ATTCAATATGGGCCGGACTAAT 57.342 40.909 7.57 3.89 0.00 1.73
258 259 4.019681 CCTATTCAATATGGGCCGGACTAA 60.020 45.833 7.57 0.00 0.00 2.24
259 260 3.517901 CCTATTCAATATGGGCCGGACTA 59.482 47.826 7.57 0.00 0.00 2.59
260 261 2.305927 CCTATTCAATATGGGCCGGACT 59.694 50.000 7.57 0.00 0.00 3.85
261 262 2.039879 ACCTATTCAATATGGGCCGGAC 59.960 50.000 5.05 0.00 0.00 4.79
262 263 2.304761 GACCTATTCAATATGGGCCGGA 59.695 50.000 5.05 0.00 0.00 5.14
263 264 2.711542 GACCTATTCAATATGGGCCGG 58.288 52.381 0.00 0.00 0.00 6.13
264 265 2.346803 CGACCTATTCAATATGGGCCG 58.653 52.381 0.00 0.00 0.00 6.13
265 266 2.304761 TCCGACCTATTCAATATGGGCC 59.695 50.000 0.00 0.00 0.00 5.80
266 267 3.335579 GTCCGACCTATTCAATATGGGC 58.664 50.000 0.00 0.00 0.00 5.36
267 268 3.585862 CGTCCGACCTATTCAATATGGG 58.414 50.000 0.00 0.00 0.00 4.00
268 269 2.993899 GCGTCCGACCTATTCAATATGG 59.006 50.000 0.00 0.00 0.00 2.74
269 270 2.993899 GGCGTCCGACCTATTCAATATG 59.006 50.000 0.00 0.00 0.00 1.78
270 271 2.028385 GGGCGTCCGACCTATTCAATAT 60.028 50.000 3.82 0.00 41.04 1.28
271 272 1.342174 GGGCGTCCGACCTATTCAATA 59.658 52.381 3.82 0.00 41.04 1.90
272 273 0.106149 GGGCGTCCGACCTATTCAAT 59.894 55.000 3.82 0.00 41.04 2.57
273 274 1.518774 GGGCGTCCGACCTATTCAA 59.481 57.895 3.82 0.00 41.04 2.69
274 275 3.213264 GGGCGTCCGACCTATTCA 58.787 61.111 3.82 0.00 41.04 2.57
286 287 4.387343 TAAGGGGTCCTCGGGCGT 62.387 66.667 0.00 0.00 30.89 5.68
287 288 3.537874 CTAAGGGGTCCTCGGGCG 61.538 72.222 0.00 0.00 30.89 6.13
288 289 2.365237 ACTAAGGGGTCCTCGGGC 60.365 66.667 0.00 0.00 30.89 6.13
289 290 3.951765 GACTAAGGGGTCCTCGGG 58.048 66.667 0.00 0.00 30.89 5.14
295 296 1.487300 GAGTCCTGGACTAAGGGGTC 58.513 60.000 28.41 11.40 43.53 4.46
296 297 0.042881 GGAGTCCTGGACTAAGGGGT 59.957 60.000 28.41 5.74 43.53 4.95
297 298 0.691413 GGGAGTCCTGGACTAAGGGG 60.691 65.000 28.41 0.00 43.53 4.79
298 299 0.340208 AGGGAGTCCTGGACTAAGGG 59.660 60.000 28.41 0.00 43.53 3.95
299 300 1.007238 TGAGGGAGTCCTGGACTAAGG 59.993 57.143 28.41 0.00 43.53 2.69
300 301 2.498078 GTTGAGGGAGTCCTGGACTAAG 59.502 54.545 28.41 0.00 43.53 2.18
301 302 2.537143 GTTGAGGGAGTCCTGGACTAA 58.463 52.381 28.41 16.09 43.53 2.24
302 303 1.616187 CGTTGAGGGAGTCCTGGACTA 60.616 57.143 28.41 10.70 43.53 2.59
303 304 0.900647 CGTTGAGGGAGTCCTGGACT 60.901 60.000 28.70 28.70 46.42 3.85
304 305 0.898789 TCGTTGAGGGAGTCCTGGAC 60.899 60.000 19.20 19.20 45.05 4.02
305 306 0.898789 GTCGTTGAGGGAGTCCTGGA 60.899 60.000 9.58 0.00 45.05 3.86
306 307 1.592223 GTCGTTGAGGGAGTCCTGG 59.408 63.158 9.58 0.00 45.05 4.45
307 308 1.213013 CGTCGTTGAGGGAGTCCTG 59.787 63.158 9.58 0.00 45.05 3.86
309 310 2.126031 GCGTCGTTGAGGGAGTCC 60.126 66.667 0.00 0.00 0.00 3.85
310 311 2.126031 GGCGTCGTTGAGGGAGTC 60.126 66.667 0.00 0.00 0.00 3.36
311 312 3.692406 GGGCGTCGTTGAGGGAGT 61.692 66.667 0.00 0.00 0.00 3.85
312 313 3.691342 TGGGCGTCGTTGAGGGAG 61.691 66.667 0.00 0.00 0.00 4.30
313 314 3.998672 GTGGGCGTCGTTGAGGGA 61.999 66.667 0.00 0.00 0.00 4.20
314 315 3.934391 GAGTGGGCGTCGTTGAGGG 62.934 68.421 0.00 0.00 0.00 4.30
315 316 2.432628 GAGTGGGCGTCGTTGAGG 60.433 66.667 0.00 0.00 0.00 3.86
316 317 2.432628 GGAGTGGGCGTCGTTGAG 60.433 66.667 0.00 0.00 0.00 3.02
317 318 4.351938 CGGAGTGGGCGTCGTTGA 62.352 66.667 0.00 0.00 0.00 3.18
469 470 9.294030 GAATCAAGATGAAAACAACATACATCC 57.706 33.333 0.00 0.00 38.32 3.51
496 497 4.036852 CAGATATGAGCAACACCTCGTAGA 59.963 45.833 0.00 0.00 36.92 2.59
517 524 9.850628 CATCCATATCAAAATTAGTTATGCCAG 57.149 33.333 0.00 0.00 0.00 4.85
523 530 9.625747 TGAGCACATCCATATCAAAATTAGTTA 57.374 29.630 0.00 0.00 0.00 2.24
581 588 9.970553 ATGCAGATACAATGATATTAACCAGAT 57.029 29.630 0.00 0.00 0.00 2.90
589 596 9.511272 TGCTTTCTATGCAGATACAATGATATT 57.489 29.630 0.00 0.00 35.31 1.28
684 693 3.004419 CCATATGCCAGTGCTTTCATCTG 59.996 47.826 0.00 0.00 38.71 2.90
685 694 3.220110 CCATATGCCAGTGCTTTCATCT 58.780 45.455 0.00 0.00 38.71 2.90
787 801 7.512746 AGTCTGTAATGCCCTTGGACTATATTA 59.487 37.037 0.00 0.00 31.93 0.98
823 837 7.334671 TGTTTTGTCAGTTTATATGCCGTATGA 59.665 33.333 0.00 0.00 0.00 2.15
838 852 7.156876 TCTTTTTCATGTCTGTTTTGTCAGT 57.843 32.000 0.00 0.00 36.85 3.41
907 923 3.742640 GCTCCCGTGAGAATAAGCTTCAT 60.743 47.826 0.00 0.00 41.42 2.57
924 2063 0.393808 TGGCGTGGAAATAAGCTCCC 60.394 55.000 0.00 0.00 31.32 4.30
941 2080 2.424956 GGCCAGTTCTTTTGAGCTATGG 59.575 50.000 0.00 0.00 37.94 2.74
1091 2230 4.872691 CAGGTAGTAAGTGCTCTTCATTGG 59.127 45.833 3.91 0.00 35.36 3.16
1169 2308 1.369091 CTGTCGGCCGGAGAAAATGG 61.369 60.000 27.83 1.76 0.00 3.16
1262 2404 1.524165 GAGAGCGAGACGGAGGCTA 60.524 63.158 0.00 0.00 37.10 3.93
1406 2548 0.518636 CACCCAAATGACTGTCTGCG 59.481 55.000 9.51 0.00 0.00 5.18
1413 2555 3.424703 CCTGTTCATCACCCAAATGACT 58.575 45.455 0.00 0.00 33.01 3.41
1491 2633 1.280133 TCGTTTAGGAGGAGGACGAGA 59.720 52.381 0.00 0.00 37.76 4.04
1512 2654 0.185901 TTGGCCTCTTCTGCTGGTTT 59.814 50.000 3.32 0.00 0.00 3.27
1947 3089 3.551846 GTTGACCACCTCAAAGGAGAAA 58.448 45.455 0.00 0.00 44.26 2.52
1983 3125 1.528824 CGGGCTCATCACCATCCTT 59.471 57.895 0.00 0.00 0.00 3.36
2269 3411 1.666189 GGAGAAATAACTGCTCGGCAC 59.334 52.381 0.00 0.00 33.79 5.01
2303 3454 4.847516 CCGACGCGCAATCTCCGA 62.848 66.667 5.73 0.00 0.00 4.55
2520 3674 1.093159 AAGATACCGAAGACGCGACT 58.907 50.000 15.93 10.02 38.29 4.18
2643 3797 3.980989 TTGTCCGTACACCGCGCT 61.981 61.111 5.56 0.00 34.61 5.92
2652 3806 2.297698 TCTGGGAGAAGTTGTCCGTA 57.702 50.000 12.62 4.05 34.56 4.02
2673 3827 2.003548 GAAGCTCCCCATCCCCAGT 61.004 63.158 0.00 0.00 0.00 4.00
2810 3984 1.135112 CGAGATTGACGTGGTGGATCA 60.135 52.381 0.00 0.00 0.00 2.92
3414 4609 0.394899 TCATCTCCTCGCTCTGCTGA 60.395 55.000 0.00 0.00 0.00 4.26
3428 4623 2.502492 CCCATCGTCGGCCTCATCT 61.502 63.158 0.00 0.00 0.00 2.90
3495 4690 2.523168 TCGAGGTGTCTGGGCACA 60.523 61.111 7.63 0.00 40.89 4.57
3640 4838 4.564782 ACTTTGCTCCTGAGATGAATGA 57.435 40.909 0.00 0.00 0.00 2.57
3650 4848 0.792640 CACGCTGTACTTTGCTCCTG 59.207 55.000 0.00 0.00 0.00 3.86
3672 4870 4.942944 TCTTCAGGTGAGAGGGTATGTAA 58.057 43.478 0.00 0.00 0.00 2.41
3674 4872 3.474798 TCTTCAGGTGAGAGGGTATGT 57.525 47.619 0.00 0.00 0.00 2.29
3781 4979 1.227853 GGGTTGTGCTCGTCAGGTT 60.228 57.895 0.00 0.00 0.00 3.50
3788 4986 1.541147 ACATCAATTGGGTTGTGCTCG 59.459 47.619 5.42 0.00 38.95 5.03
3789 4987 3.665745 AACATCAATTGGGTTGTGCTC 57.334 42.857 13.34 0.00 38.95 4.26
3800 4998 2.899256 CACACCCCCAGAAACATCAATT 59.101 45.455 0.00 0.00 0.00 2.32
3837 5035 3.758554 GGTTTATGCAGGACACATCTTGT 59.241 43.478 0.00 0.00 43.10 3.16
3838 5036 4.012374 AGGTTTATGCAGGACACATCTTG 58.988 43.478 0.00 0.00 35.06 3.02
3839 5037 4.307032 AGGTTTATGCAGGACACATCTT 57.693 40.909 0.00 0.00 0.00 2.40
3840 5038 4.225042 TGTAGGTTTATGCAGGACACATCT 59.775 41.667 0.00 0.00 0.00 2.90
3841 5039 4.513442 TGTAGGTTTATGCAGGACACATC 58.487 43.478 0.00 0.00 0.00 3.06
3842 5040 4.225042 TCTGTAGGTTTATGCAGGACACAT 59.775 41.667 0.00 0.00 34.10 3.21
3843 5041 3.580895 TCTGTAGGTTTATGCAGGACACA 59.419 43.478 0.00 0.00 34.10 3.72
3844 5042 4.202245 TCTGTAGGTTTATGCAGGACAC 57.798 45.455 0.00 0.00 34.10 3.67
3845 5043 4.901197 TTCTGTAGGTTTATGCAGGACA 57.099 40.909 0.00 0.00 34.10 4.02
3846 5044 4.636206 CCTTTCTGTAGGTTTATGCAGGAC 59.364 45.833 0.00 0.00 34.10 3.85
3847 5045 4.324254 CCCTTTCTGTAGGTTTATGCAGGA 60.324 45.833 0.00 0.00 34.10 3.86
3848 5046 3.947834 CCCTTTCTGTAGGTTTATGCAGG 59.052 47.826 0.00 0.00 34.10 4.85
3849 5047 4.589908 ACCCTTTCTGTAGGTTTATGCAG 58.410 43.478 0.00 0.00 34.56 4.41
3850 5048 4.650972 ACCCTTTCTGTAGGTTTATGCA 57.349 40.909 0.00 0.00 33.17 3.96
3851 5049 4.380550 GCAACCCTTTCTGTAGGTTTATGC 60.381 45.833 0.00 0.00 41.97 3.14
3852 5050 4.142687 CGCAACCCTTTCTGTAGGTTTATG 60.143 45.833 0.00 0.00 41.97 1.90
3853 5051 4.007659 CGCAACCCTTTCTGTAGGTTTAT 58.992 43.478 0.00 0.00 41.97 1.40
3854 5052 3.071312 TCGCAACCCTTTCTGTAGGTTTA 59.929 43.478 0.00 0.00 41.97 2.01
3855 5053 2.158726 TCGCAACCCTTTCTGTAGGTTT 60.159 45.455 0.00 0.00 41.97 3.27
3856 5054 1.418637 TCGCAACCCTTTCTGTAGGTT 59.581 47.619 0.00 0.00 44.72 3.50
3857 5055 1.053424 TCGCAACCCTTTCTGTAGGT 58.947 50.000 0.00 0.00 33.17 3.08
3858 5056 1.270625 TGTCGCAACCCTTTCTGTAGG 60.271 52.381 0.00 0.00 34.92 3.18
3859 5057 2.163818 TGTCGCAACCCTTTCTGTAG 57.836 50.000 0.00 0.00 0.00 2.74
3860 5058 2.301870 AGATGTCGCAACCCTTTCTGTA 59.698 45.455 0.00 0.00 0.00 2.74
3861 5059 1.072331 AGATGTCGCAACCCTTTCTGT 59.928 47.619 0.00 0.00 0.00 3.41
3862 5060 1.734465 GAGATGTCGCAACCCTTTCTG 59.266 52.381 0.00 0.00 0.00 3.02
3863 5061 1.625818 AGAGATGTCGCAACCCTTTCT 59.374 47.619 0.00 0.00 0.00 2.52
3864 5062 1.734465 CAGAGATGTCGCAACCCTTTC 59.266 52.381 0.00 0.00 0.00 2.62
3865 5063 1.072331 ACAGAGATGTCGCAACCCTTT 59.928 47.619 0.00 0.00 0.00 3.11
3866 5064 0.687354 ACAGAGATGTCGCAACCCTT 59.313 50.000 0.00 0.00 0.00 3.95
3867 5065 0.247736 GACAGAGATGTCGCAACCCT 59.752 55.000 0.00 0.00 0.00 4.34
3868 5066 2.755929 GACAGAGATGTCGCAACCC 58.244 57.895 0.00 0.00 0.00 4.11
3875 5073 2.724977 TTGACACCGACAGAGATGTC 57.275 50.000 0.00 0.00 41.51 3.06
3876 5074 3.131396 GTTTTGACACCGACAGAGATGT 58.869 45.455 0.00 0.00 0.00 3.06
3877 5075 2.480419 GGTTTTGACACCGACAGAGATG 59.520 50.000 0.00 0.00 0.00 2.90
3878 5076 2.767505 GGTTTTGACACCGACAGAGAT 58.232 47.619 0.00 0.00 0.00 2.75
3879 5077 2.234300 GGTTTTGACACCGACAGAGA 57.766 50.000 0.00 0.00 0.00 3.10
3921 5119 1.878088 AGTCTTAGACGCACAGTTCGA 59.122 47.619 6.73 0.00 37.67 3.71
3953 5151 0.188342 AACATTGTGTCCCCAGCCTT 59.812 50.000 0.00 0.00 0.00 4.35
3989 5187 6.312529 AGTAGGGTATTACATCCATCGAGAA 58.687 40.000 0.00 0.00 0.00 2.87
4000 5198 5.027460 TCAAGCAGGAAGTAGGGTATTACA 58.973 41.667 0.00 0.00 0.00 2.41
4065 5263 3.846588 AGGGTTTAGCCTCTTTGATCTCA 59.153 43.478 0.00 0.00 37.43 3.27
4094 5292 8.632679 CAACAATAACAATCATACCATAGGCTT 58.367 33.333 0.00 0.00 0.00 4.35
4248 5452 0.896479 TTCGTCCTGTGTCCGGATGA 60.896 55.000 7.81 0.00 43.08 2.92
4320 5524 1.692749 GGGGGTATCTGGACAGCCA 60.693 63.158 0.00 0.00 43.47 4.75
4370 5574 0.601057 TCGTCGTCATTGAAGCCTGA 59.399 50.000 0.00 0.00 0.00 3.86
4408 5612 1.812093 CCGCCTCGTAATGCCGAAA 60.812 57.895 0.00 0.00 36.24 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.