Multiple sequence alignment - TraesCS4B01G215100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G215100 chr4B 100.000 6707 0 0 1 6707 454701522 454694816 0.000000e+00 12386.0
1 TraesCS4B01G215100 chr4B 96.471 85 3 0 2796 2880 159076810 159076726 2.520000e-29 141.0
2 TraesCS4B01G215100 chr4D 94.095 3946 134 29 330 4228 369263627 369259734 0.000000e+00 5904.0
3 TraesCS4B01G215100 chr4D 96.552 1624 42 6 4272 5893 369259622 369258011 0.000000e+00 2676.0
4 TraesCS4B01G215100 chr4D 94.580 369 9 7 5926 6284 369258014 369257647 1.630000e-155 560.0
5 TraesCS4B01G215100 chr4D 90.057 352 23 2 1 341 369312254 369311904 4.770000e-121 446.0
6 TraesCS4B01G215100 chr4D 80.328 366 39 17 6283 6621 369257608 369257249 5.190000e-61 246.0
7 TraesCS4B01G215100 chr4D 96.471 85 3 0 2796 2880 123721157 123721073 2.520000e-29 141.0
8 TraesCS4B01G215100 chr4D 88.350 103 10 2 4503 4604 270678643 270678542 9.130000e-24 122.0
9 TraesCS4B01G215100 chr4D 89.888 89 9 0 6619 6707 327573964 327574052 1.530000e-21 115.0
10 TraesCS4B01G215100 chr4A 97.067 1364 38 2 4529 5891 95187555 95188917 0.000000e+00 2296.0
11 TraesCS4B01G215100 chr4A 94.484 1414 64 8 1372 2775 95183948 95185357 0.000000e+00 2167.0
12 TraesCS4B01G215100 chr4A 91.782 1010 57 6 2774 3768 95185451 95186449 0.000000e+00 1382.0
13 TraesCS4B01G215100 chr4A 95.196 562 19 3 718 1274 95183053 95183611 0.000000e+00 881.0
14 TraesCS4B01G215100 chr4A 92.901 493 16 1 3755 4228 95186612 95187104 0.000000e+00 699.0
15 TraesCS4B01G215100 chr4A 98.069 259 4 1 4272 4530 95187216 95187473 3.690000e-122 449.0
16 TraesCS4B01G215100 chr4A 81.663 409 44 16 63 444 95181039 95181443 1.820000e-80 311.0
17 TraesCS4B01G215100 chr4A 84.459 148 22 1 6285 6432 95192300 95192446 1.950000e-30 145.0
18 TraesCS4B01G215100 chr4A 90.426 94 8 1 5942 6034 95188939 95189032 9.130000e-24 122.0
19 TraesCS4B01G215100 chr4A 95.918 49 2 0 1329 1377 95183888 95183936 5.580000e-11 80.5
20 TraesCS4B01G215100 chr3A 85.474 654 76 4 2909 3544 208803181 208803833 0.000000e+00 664.0
21 TraesCS4B01G215100 chr3A 88.318 214 15 4 2593 2797 208802951 208803163 1.440000e-61 248.0
22 TraesCS4B01G215100 chr3A 96.471 85 3 0 2796 2880 633115902 633115818 2.520000e-29 141.0
23 TraesCS4B01G215100 chr3A 86.885 61 6 2 6364 6423 629650529 629650470 4.340000e-07 67.6
24 TraesCS4B01G215100 chr3D 84.226 672 79 15 2886 3544 171333472 171334129 4.410000e-176 628.0
25 TraesCS4B01G215100 chr3D 88.318 214 15 4 2593 2797 171333252 171333464 1.440000e-61 248.0
26 TraesCS4B01G215100 chr3D 97.647 85 2 0 2796 2880 193418898 193418814 5.420000e-31 147.0
27 TraesCS4B01G215100 chr3B 83.804 673 82 12 2886 3544 250276786 250277445 1.240000e-171 614.0
28 TraesCS4B01G215100 chr5D 83.610 482 75 4 2888 3368 560451421 560450943 3.690000e-122 449.0
29 TraesCS4B01G215100 chr5D 86.441 59 7 1 6365 6422 157995719 157995777 5.620000e-06 63.9
30 TraesCS4B01G215100 chr2D 83.180 434 71 2 3059 3490 82224713 82224280 4.870000e-106 396.0
31 TraesCS4B01G215100 chr2D 97.753 89 2 0 6619 6707 387432763 387432675 3.240000e-33 154.0
32 TraesCS4B01G215100 chr2D 93.258 89 6 0 6619 6707 618315141 618315229 1.520000e-26 132.0
33 TraesCS4B01G215100 chr2D 90.588 85 8 0 6621 6705 238155456 238155540 5.500000e-21 113.0
34 TraesCS4B01G215100 chr7D 80.748 535 76 16 2901 3416 237407765 237408291 6.310000e-105 392.0
35 TraesCS4B01G215100 chr7D 96.471 85 3 0 2796 2880 203520131 203520047 2.520000e-29 141.0
36 TraesCS4B01G215100 chr7D 89.796 98 8 2 4501 4597 34845545 34845641 2.540000e-24 124.0
37 TraesCS4B01G215100 chr7D 76.889 225 33 9 2907 3114 611170663 611170885 7.110000e-20 110.0
38 TraesCS4B01G215100 chr2B 76.053 380 71 7 2960 3339 556969220 556969579 5.340000e-41 180.0
39 TraesCS4B01G215100 chr2B 84.906 159 23 1 2886 3043 3412210 3412368 6.960000e-35 159.0
40 TraesCS4B01G215100 chr2B 85.827 127 18 0 3128 3254 3412357 3412483 1.170000e-27 135.0
41 TraesCS4B01G215100 chr2B 89.610 77 7 1 2433 2508 283176123 283176047 5.540000e-16 97.1
42 TraesCS4B01G215100 chr7A 97.647 85 2 0 2796 2880 63431304 63431220 5.420000e-31 147.0
43 TraesCS4B01G215100 chr7A 92.453 53 3 1 6364 6415 69521373 69521321 2.590000e-09 75.0
44 TraesCS4B01G215100 chr7B 96.471 85 3 0 2796 2880 644472097 644472013 2.520000e-29 141.0
45 TraesCS4B01G215100 chr7B 92.135 89 7 0 6619 6707 591523673 591523585 7.060000e-25 126.0
46 TraesCS4B01G215100 chr7B 83.333 120 14 5 2645 2760 683759723 683759606 9.200000e-19 106.0
47 TraesCS4B01G215100 chr5A 92.553 94 3 4 4510 4601 51547343 51547434 1.520000e-26 132.0
48 TraesCS4B01G215100 chr5A 89.796 98 8 2 4503 4599 673184705 673184609 2.540000e-24 124.0
49 TraesCS4B01G215100 chr5A 89.412 85 7 2 2402 2485 246834588 246834505 9.200000e-19 106.0
50 TraesCS4B01G215100 chr5B 92.135 89 7 0 6619 6707 573078113 573078025 7.060000e-25 126.0
51 TraesCS4B01G215100 chr5B 89.655 58 5 1 6364 6420 348021062 348021005 9.330000e-09 73.1
52 TraesCS4B01G215100 chr2A 86.179 123 10 6 4488 4605 41474136 41474256 7.060000e-25 126.0
53 TraesCS4B01G215100 chr2A 86.441 59 7 1 6364 6421 14496625 14496683 5.620000e-06 63.9
54 TraesCS4B01G215100 chr1B 88.073 109 10 3 4499 4605 555953785 555953892 7.060000e-25 126.0
55 TraesCS4B01G215100 chr1B 84.270 89 11 3 2399 2485 678263519 678263606 4.310000e-12 84.2
56 TraesCS4B01G215100 chr1A 85.366 123 10 8 4502 4620 589484272 589484390 3.290000e-23 121.0
57 TraesCS4B01G215100 chr6B 92.500 80 6 0 6619 6698 448622408 448622329 1.530000e-21 115.0
58 TraesCS4B01G215100 chr6B 92.308 65 3 2 6357 6419 645380055 645379991 2.580000e-14 91.6
59 TraesCS4B01G215100 chr6A 86.486 74 8 2 2394 2465 30206353 30206426 5.580000e-11 80.5
60 TraesCS4B01G215100 chr6A 90.909 55 3 2 6370 6423 106877610 106877663 9.330000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G215100 chr4B 454694816 454701522 6706 True 12386.00 12386 100.00000 1 6707 1 chr4B.!!$R2 6706
1 TraesCS4B01G215100 chr4D 369257249 369263627 6378 True 2346.50 5904 91.38875 330 6621 4 chr4D.!!$R4 6291
2 TraesCS4B01G215100 chr4A 95181039 95192446 11407 False 853.25 2296 92.19650 63 6432 10 chr4A.!!$F1 6369
3 TraesCS4B01G215100 chr3A 208802951 208803833 882 False 456.00 664 86.89600 2593 3544 2 chr3A.!!$F1 951
4 TraesCS4B01G215100 chr3D 171333252 171334129 877 False 438.00 628 86.27200 2593 3544 2 chr3D.!!$F1 951
5 TraesCS4B01G215100 chr3B 250276786 250277445 659 False 614.00 614 83.80400 2886 3544 1 chr3B.!!$F1 658
6 TraesCS4B01G215100 chr7D 237407765 237408291 526 False 392.00 392 80.74800 2901 3416 1 chr7D.!!$F2 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.039035 ACTCCAGCCTCGAAGACTCT 59.961 55.000 0.00 0.0 0.00 3.24 F
133 134 0.322816 GCTTGAGGGGATGCAAGTCA 60.323 55.000 0.00 0.0 42.57 3.41 F
1170 2576 0.847035 GAGGAGTCGCGCTAAAATCG 59.153 55.000 5.56 0.0 0.00 3.34 F
1491 3136 1.131504 GAGAACTCGCAGATGTCGTCT 59.868 52.381 0.00 0.0 37.80 4.18 F
2299 3948 0.954452 CGAGCAAAACAGAAGCCCTT 59.046 50.000 0.00 0.0 0.00 3.95 F
3056 4834 0.181587 TCTTGGTGTGCGGGAAAAGA 59.818 50.000 0.00 0.0 0.00 2.52 F
4032 6006 0.841289 TCCCAAAACTCACCGAACCT 59.159 50.000 0.00 0.0 0.00 3.50 F
4765 6890 1.264288 CAGTTGAGTTGCCGACTTTCC 59.736 52.381 0.00 0.0 39.19 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1170 2576 0.393808 TTCACGGGCATTAGGAAGGC 60.394 55.0 0.00 0.0 37.49 4.35 R
1790 3435 0.828677 ACGCTTCGCTAATTACCCCT 59.171 50.0 0.00 0.0 0.00 4.79 R
2221 3869 0.251354 AGCTGCGGACAGTGATCATT 59.749 50.0 0.00 0.0 46.30 2.57 R
2325 3974 0.616964 AGGTCTGCTCCATCTGCTCA 60.617 55.0 0.00 0.0 0.00 4.26 R
3694 5475 0.469892 AAAACTGGGCCTCCAACAGG 60.470 55.0 4.53 0.0 46.82 4.00 R
4311 6353 0.180406 ACTGCTCAAACGACCTTGGT 59.820 50.0 0.00 0.0 0.00 3.67 R
4963 7088 0.460987 CTTGCTTAGCCCTCACTCGG 60.461 60.0 0.29 0.0 0.00 4.63 R
6679 11903 0.039437 TGAGCGAACCGAGAACTGAC 60.039 55.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.290493 TCCATCGTTGATATTGCCTAACT 57.710 39.130 0.00 0.00 0.00 2.24
23 24 5.297547 TCCATCGTTGATATTGCCTAACTC 58.702 41.667 0.00 0.00 0.00 3.01
24 25 4.452455 CCATCGTTGATATTGCCTAACTCC 59.548 45.833 0.00 0.00 0.00 3.85
25 26 4.746535 TCGTTGATATTGCCTAACTCCA 57.253 40.909 0.00 0.00 0.00 3.86
26 27 4.693283 TCGTTGATATTGCCTAACTCCAG 58.307 43.478 0.00 0.00 0.00 3.86
27 28 3.248602 CGTTGATATTGCCTAACTCCAGC 59.751 47.826 0.00 0.00 0.00 4.85
28 29 3.492102 TGATATTGCCTAACTCCAGCC 57.508 47.619 0.00 0.00 0.00 4.85
29 30 3.048600 TGATATTGCCTAACTCCAGCCT 58.951 45.455 0.00 0.00 0.00 4.58
30 31 3.071602 TGATATTGCCTAACTCCAGCCTC 59.928 47.826 0.00 0.00 0.00 4.70
31 32 0.179000 ATTGCCTAACTCCAGCCTCG 59.821 55.000 0.00 0.00 0.00 4.63
32 33 0.902984 TTGCCTAACTCCAGCCTCGA 60.903 55.000 0.00 0.00 0.00 4.04
33 34 0.902984 TGCCTAACTCCAGCCTCGAA 60.903 55.000 0.00 0.00 0.00 3.71
34 35 0.179097 GCCTAACTCCAGCCTCGAAG 60.179 60.000 0.00 0.00 0.00 3.79
35 36 1.475403 CCTAACTCCAGCCTCGAAGA 58.525 55.000 0.00 0.00 0.00 2.87
36 37 1.135333 CCTAACTCCAGCCTCGAAGAC 59.865 57.143 0.00 0.00 0.00 3.01
37 38 2.096248 CTAACTCCAGCCTCGAAGACT 58.904 52.381 0.00 0.00 0.00 3.24
38 39 0.892063 AACTCCAGCCTCGAAGACTC 59.108 55.000 0.00 0.00 0.00 3.36
39 40 0.039035 ACTCCAGCCTCGAAGACTCT 59.961 55.000 0.00 0.00 0.00 3.24
40 41 1.282447 ACTCCAGCCTCGAAGACTCTA 59.718 52.381 0.00 0.00 0.00 2.43
41 42 2.092103 ACTCCAGCCTCGAAGACTCTAT 60.092 50.000 0.00 0.00 0.00 1.98
42 43 2.293122 CTCCAGCCTCGAAGACTCTATG 59.707 54.545 0.00 0.00 0.00 2.23
43 44 2.092375 TCCAGCCTCGAAGACTCTATGA 60.092 50.000 0.00 0.00 0.00 2.15
44 45 2.293122 CCAGCCTCGAAGACTCTATGAG 59.707 54.545 0.00 0.00 35.52 2.90
45 46 3.210227 CAGCCTCGAAGACTCTATGAGA 58.790 50.000 8.41 0.00 33.32 3.27
46 47 3.820467 CAGCCTCGAAGACTCTATGAGAT 59.180 47.826 8.41 0.00 33.32 2.75
47 48 5.000591 CAGCCTCGAAGACTCTATGAGATA 58.999 45.833 8.41 0.00 33.32 1.98
48 49 5.001232 AGCCTCGAAGACTCTATGAGATAC 58.999 45.833 8.41 0.75 33.32 2.24
49 50 5.001232 GCCTCGAAGACTCTATGAGATACT 58.999 45.833 8.41 0.00 33.32 2.12
50 51 5.472137 GCCTCGAAGACTCTATGAGATACTT 59.528 44.000 8.41 4.44 33.32 2.24
51 52 6.567701 GCCTCGAAGACTCTATGAGATACTTG 60.568 46.154 8.41 1.71 33.32 3.16
52 53 6.072728 CCTCGAAGACTCTATGAGATACTTGG 60.073 46.154 8.41 5.88 33.32 3.61
53 54 6.592870 TCGAAGACTCTATGAGATACTTGGA 58.407 40.000 1.25 7.64 33.32 3.53
54 55 7.227873 TCGAAGACTCTATGAGATACTTGGAT 58.772 38.462 1.25 0.00 33.32 3.41
55 56 7.389330 TCGAAGACTCTATGAGATACTTGGATC 59.611 40.741 1.25 0.00 33.32 3.36
56 57 7.361713 CGAAGACTCTATGAGATACTTGGATCC 60.362 44.444 4.20 4.20 33.32 3.36
57 58 5.943416 AGACTCTATGAGATACTTGGATCCG 59.057 44.000 7.39 0.00 33.32 4.18
58 59 5.013547 ACTCTATGAGATACTTGGATCCGG 58.986 45.833 7.39 5.09 33.32 5.14
59 60 4.344978 TCTATGAGATACTTGGATCCGGG 58.655 47.826 7.39 4.70 0.00 5.73
60 61 2.471815 TGAGATACTTGGATCCGGGT 57.528 50.000 7.39 10.71 0.00 5.28
61 62 2.759355 TGAGATACTTGGATCCGGGTT 58.241 47.619 13.42 0.00 0.00 4.11
71 72 3.321901 ATCCGGGTTCCCCTACCGT 62.322 63.158 0.00 0.00 45.85 4.83
75 76 1.669999 CGGGTTCCCCTACCGTAGTG 61.670 65.000 4.86 0.00 42.67 2.74
79 80 0.409092 TTCCCCTACCGTAGTGGACA 59.591 55.000 9.12 0.00 42.00 4.02
91 92 1.402787 AGTGGACAACAAAGGCCAAG 58.597 50.000 5.01 0.00 31.18 3.61
96 97 1.068588 GACAACAAAGGCCAAGGGAAC 59.931 52.381 5.01 0.00 0.00 3.62
110 111 2.202878 GAACCTGCGGCGATGCTA 60.203 61.111 12.98 0.00 35.36 3.49
117 118 2.202932 CGGCGATGCTAGTGGCTT 60.203 61.111 0.00 0.00 42.39 4.35
124 125 0.621571 ATGCTAGTGGCTTGAGGGGA 60.622 55.000 0.00 0.00 42.39 4.81
133 134 0.322816 GCTTGAGGGGATGCAAGTCA 60.323 55.000 0.00 0.00 42.57 3.41
156 168 4.528987 ACCTCTCTCAAGAAACCCTAGAAC 59.471 45.833 0.00 0.00 0.00 3.01
157 169 4.775253 CCTCTCTCAAGAAACCCTAGAACT 59.225 45.833 0.00 0.00 0.00 3.01
158 170 5.247337 CCTCTCTCAAGAAACCCTAGAACTT 59.753 44.000 0.00 0.00 0.00 2.66
159 171 6.239743 CCTCTCTCAAGAAACCCTAGAACTTT 60.240 42.308 0.00 0.00 0.00 2.66
161 173 7.574607 TCTCTCAAGAAACCCTAGAACTTTTT 58.425 34.615 0.00 0.00 0.00 1.94
218 230 9.585099 CTATTCTAAAATGCAAAACCAATAGCA 57.415 29.630 0.00 0.00 41.73 3.49
221 233 7.315142 TCTAAAATGCAAAACCAATAGCAGAG 58.685 34.615 0.00 0.00 40.71 3.35
236 248 1.004440 AGAGCCACTCGTCCAAAGC 60.004 57.895 0.00 0.00 35.36 3.51
242 254 3.777925 CTCGTCCAAAGCGCACCG 61.778 66.667 11.47 1.86 0.00 4.94
249 261 1.404391 TCCAAAGCGCACCGTTTAAAA 59.596 42.857 11.47 0.00 28.99 1.52
250 262 2.034812 TCCAAAGCGCACCGTTTAAAAT 59.965 40.909 11.47 0.00 28.99 1.82
251 263 2.407026 CCAAAGCGCACCGTTTAAAATC 59.593 45.455 11.47 0.00 28.99 2.17
253 265 1.240256 AGCGCACCGTTTAAAATCCA 58.760 45.000 11.47 0.00 0.00 3.41
257 269 3.121160 GCGCACCGTTTAAAATCCAAAAG 60.121 43.478 0.30 0.00 0.00 2.27
258 270 4.291783 CGCACCGTTTAAAATCCAAAAGA 58.708 39.130 0.00 0.00 0.00 2.52
259 271 4.740695 CGCACCGTTTAAAATCCAAAAGAA 59.259 37.500 0.00 0.00 0.00 2.52
264 277 7.116233 CACCGTTTAAAATCCAAAAGAATGAGG 59.884 37.037 0.00 0.00 0.00 3.86
282 295 5.068215 TGAGGTTTTGGGAAATTAGGTGA 57.932 39.130 0.00 0.00 0.00 4.02
286 299 5.663556 AGGTTTTGGGAAATTAGGTGAAACA 59.336 36.000 0.00 0.00 39.98 2.83
292 305 6.022315 TGGGAAATTAGGTGAAACATCCAAT 58.978 36.000 0.00 0.00 39.98 3.16
419 446 5.985530 CACTAATAGCCATGAAGTGATTCGA 59.014 40.000 0.00 0.00 39.93 3.71
508 1764 3.679980 CACGTCCTCCTCTAAAACACATG 59.320 47.826 0.00 0.00 0.00 3.21
649 1910 7.492669 TCATTGAATCCTGTAAATCTCGTCTTC 59.507 37.037 0.00 0.00 0.00 2.87
672 1933 7.925043 TCATGAATGCAAGGCAAAAATATTT 57.075 28.000 0.00 0.00 43.62 1.40
718 1979 2.791347 TAACTTGTGTGGGTGTGTGT 57.209 45.000 0.00 0.00 0.00 3.72
719 1980 1.173043 AACTTGTGTGGGTGTGTGTG 58.827 50.000 0.00 0.00 0.00 3.82
767 2167 8.519799 TTTAGGAACAATATGAAGGGCTTTAG 57.480 34.615 0.00 0.00 0.00 1.85
776 2176 9.090692 CAATATGAAGGGCTTTAGAACAAAATG 57.909 33.333 0.00 0.00 0.00 2.32
990 2396 4.821589 CCCTCTCGCGCACCTTCC 62.822 72.222 8.75 0.00 0.00 3.46
991 2397 3.764466 CCTCTCGCGCACCTTCCT 61.764 66.667 8.75 0.00 0.00 3.36
1116 2522 1.533711 CCCCATCTCAATTCCGGCT 59.466 57.895 0.00 0.00 0.00 5.52
1153 2559 2.737252 GTCTGTTTTCCTGCGGTAAGAG 59.263 50.000 0.00 0.00 0.00 2.85
1170 2576 0.847035 GAGGAGTCGCGCTAAAATCG 59.153 55.000 5.56 0.00 0.00 3.34
1307 2713 1.882623 GCAGCCACAGAGTAAGCTTTT 59.117 47.619 3.20 0.00 31.93 2.27
1332 2960 1.956629 GCGAATCTCCCCCTTCGTCA 61.957 60.000 6.56 0.00 44.54 4.35
1335 2963 2.420129 CGAATCTCCCCCTTCGTCATTT 60.420 50.000 0.00 0.00 39.42 2.32
1385 3030 2.094675 CGAGGGATTGGATTTTGCTGT 58.905 47.619 0.00 0.00 0.00 4.40
1391 3036 4.462483 GGGATTGGATTTTGCTGTGTTCTA 59.538 41.667 0.00 0.00 0.00 2.10
1393 3038 6.268566 GGATTGGATTTTGCTGTGTTCTATC 58.731 40.000 0.00 0.00 0.00 2.08
1491 3136 1.131504 GAGAACTCGCAGATGTCGTCT 59.868 52.381 0.00 0.00 37.80 4.18
1712 3357 3.175240 CACGCGCTCTCGAACCTG 61.175 66.667 5.73 0.00 38.10 4.00
1769 3414 3.552604 TGCTTTACATGCGGTCTTTTC 57.447 42.857 0.00 0.00 0.00 2.29
1790 3435 3.006430 TCATCAGCTGACGAAGGTTTGTA 59.994 43.478 20.97 0.00 33.14 2.41
1802 3447 4.573607 CGAAGGTTTGTAGGGGTAATTAGC 59.426 45.833 6.10 6.10 0.00 3.09
2088 3736 6.653989 TGGTTCAATTAAACACCACCAAAAT 58.346 32.000 0.00 0.00 34.23 1.82
2245 3894 3.241530 ACTGTCCGCAGCTTGGGA 61.242 61.111 1.99 0.12 46.30 4.37
2278 3927 6.099845 CCAGGAACCTAACAGATACCAATACT 59.900 42.308 0.00 0.00 0.00 2.12
2284 3933 4.323553 AACAGATACCAATACTCCGAGC 57.676 45.455 0.00 0.00 0.00 5.03
2299 3948 0.954452 CGAGCAAAACAGAAGCCCTT 59.046 50.000 0.00 0.00 0.00 3.95
2316 3965 4.344968 AGCCCTTGTCTTAATTTGCAGTTT 59.655 37.500 0.00 0.00 0.00 2.66
2325 3974 7.136772 GTCTTAATTTGCAGTTTTACCGAACT 58.863 34.615 0.00 0.00 40.37 3.01
2400 4049 5.478332 TGCATACATGGTTCCACACAAATTA 59.522 36.000 0.00 0.00 0.00 1.40
2445 4094 3.150335 TTTTGCCACCGCCTTGCA 61.150 55.556 0.00 0.00 0.00 4.08
2525 4174 4.644498 ACTAGGCACGCCTTTTTAACTAA 58.356 39.130 17.25 0.00 45.70 2.24
2526 4175 4.694037 ACTAGGCACGCCTTTTTAACTAAG 59.306 41.667 17.25 6.53 45.70 2.18
2527 4176 3.483421 AGGCACGCCTTTTTAACTAAGT 58.517 40.909 4.27 0.00 45.70 2.24
2529 4178 4.023450 AGGCACGCCTTTTTAACTAAGTTC 60.023 41.667 4.27 0.00 45.70 3.01
2535 4184 5.209977 GCCTTTTTAACTAAGTTCCACGTG 58.790 41.667 9.08 9.08 0.00 4.49
2573 4223 0.983467 TGGTGTATCTTCTGCAGGCA 59.017 50.000 15.13 0.00 0.00 4.75
2635 4292 7.225931 TCCTGTATAAATCGGTACTGCAAAATC 59.774 37.037 0.00 0.00 0.00 2.17
2661 4325 7.868415 CGTTTTACCCTAAAATGATTTTGTGGA 59.132 33.333 20.19 3.09 43.79 4.02
2761 4426 1.869774 ACAAAACCGGAGTTCGTACC 58.130 50.000 9.46 0.00 34.19 3.34
2843 4604 2.886523 TGTCATCCCTTGCTTTGTTCTG 59.113 45.455 0.00 0.00 0.00 3.02
2895 4656 3.365265 CTGGGTTGCCGGCTCAAC 61.365 66.667 29.70 23.56 44.07 3.18
2990 4768 3.007973 GCCTTCTTCTCCGACCGCT 62.008 63.158 0.00 0.00 0.00 5.52
3056 4834 0.181587 TCTTGGTGTGCGGGAAAAGA 59.818 50.000 0.00 0.00 0.00 2.52
3088 4866 2.670592 GTTAAAGCCGGCCCACGT 60.671 61.111 26.15 0.00 42.24 4.49
3305 5083 2.420022 GCTAATTGCTCGCCTGAGAAAA 59.580 45.455 0.00 0.00 43.11 2.29
3464 5245 1.474332 TTTAGCGGACCTGTTCGGGT 61.474 55.000 2.65 2.65 43.07 5.28
3593 5374 2.045708 GCCGACCCATGCATTCACA 61.046 57.895 0.00 0.00 0.00 3.58
3640 5421 2.623502 GGACTACAGCCTCCAGGAACTA 60.624 54.545 0.00 0.00 36.02 2.24
3693 5474 2.681848 CCTCCTGCATTCTTAGCTGTTG 59.318 50.000 0.00 0.00 0.00 3.33
3694 5475 2.086869 TCCTGCATTCTTAGCTGTTGC 58.913 47.619 0.00 0.00 40.05 4.17
3695 5476 1.133790 CCTGCATTCTTAGCTGTTGCC 59.866 52.381 0.00 0.00 40.80 4.52
3696 5477 2.089980 CTGCATTCTTAGCTGTTGCCT 58.910 47.619 0.00 0.00 40.80 4.75
3697 5478 1.814394 TGCATTCTTAGCTGTTGCCTG 59.186 47.619 0.00 0.00 40.80 4.85
3698 5479 1.815003 GCATTCTTAGCTGTTGCCTGT 59.185 47.619 0.00 0.00 40.80 4.00
3699 5480 2.229784 GCATTCTTAGCTGTTGCCTGTT 59.770 45.455 0.00 0.00 40.80 3.16
3740 5521 6.712547 CCTTTTCAATAACTTGGTCAGAGAGT 59.287 38.462 0.00 0.00 32.95 3.24
3752 5533 8.157476 ACTTGGTCAGAGAGTAATTAACACAAT 58.843 33.333 0.00 0.00 0.00 2.71
3753 5534 7.905604 TGGTCAGAGAGTAATTAACACAATG 57.094 36.000 0.00 0.00 0.00 2.82
3820 5775 3.119101 CCACTAGTGTAGATTCTGCCGTT 60.119 47.826 21.18 0.00 0.00 4.44
3846 5801 7.104290 GCCTCTTAGTAACCACTTGTCTTATT 58.896 38.462 0.00 0.00 36.14 1.40
3873 5828 6.653320 GTGTCAGTTTTGTTAGATGGATACCA 59.347 38.462 0.00 0.00 38.19 3.25
3889 5844 6.129179 TGGATACCAAAGAAATTCCCTCATC 58.871 40.000 0.00 0.00 0.00 2.92
3903 5858 1.350351 CCTCATCTTATGCTCCCCCAG 59.650 57.143 0.00 0.00 0.00 4.45
4032 6006 0.841289 TCCCAAAACTCACCGAACCT 59.159 50.000 0.00 0.00 0.00 3.50
4097 6071 2.751806 CAGCTCTTGGGTTTTCATCCTC 59.248 50.000 0.00 0.00 0.00 3.71
4103 6077 3.426787 TGGGTTTTCATCCTCGCTTTA 57.573 42.857 0.00 0.00 0.00 1.85
4181 6155 3.197983 GGTGCAGTCCATAGTAACTTCCT 59.802 47.826 0.00 0.00 0.00 3.36
4182 6156 4.184629 GTGCAGTCCATAGTAACTTCCTG 58.815 47.826 0.00 0.00 0.00 3.86
4228 6202 1.270785 CCACTACACATGTGCACCTGA 60.271 52.381 26.20 3.24 34.38 3.86
4229 6203 2.616256 CCACTACACATGTGCACCTGAT 60.616 50.000 26.20 16.31 34.38 2.90
4230 6204 3.369366 CCACTACACATGTGCACCTGATA 60.369 47.826 26.20 16.53 34.38 2.15
4232 6206 4.877823 CACTACACATGTGCACCTGATATT 59.122 41.667 26.20 10.84 0.00 1.28
4233 6207 5.355071 CACTACACATGTGCACCTGATATTT 59.645 40.000 26.20 4.13 0.00 1.40
4234 6208 4.970662 ACACATGTGCACCTGATATTTC 57.029 40.909 26.20 0.00 0.00 2.17
4236 6210 4.951715 ACACATGTGCACCTGATATTTCAT 59.048 37.500 26.20 1.25 0.00 2.57
4237 6211 5.419788 ACACATGTGCACCTGATATTTCATT 59.580 36.000 26.20 0.09 0.00 2.57
4238 6212 5.975344 CACATGTGCACCTGATATTTCATTC 59.025 40.000 26.20 0.00 0.00 2.67
4239 6213 4.880886 TGTGCACCTGATATTTCATTCG 57.119 40.909 15.69 0.00 0.00 3.34
4240 6214 4.512484 TGTGCACCTGATATTTCATTCGA 58.488 39.130 15.69 0.00 0.00 3.71
4241 6215 5.125356 TGTGCACCTGATATTTCATTCGAT 58.875 37.500 15.69 0.00 0.00 3.59
4243 6217 5.237127 GTGCACCTGATATTTCATTCGATGA 59.763 40.000 5.22 0.00 37.55 2.92
4320 6362 7.812648 TGAAATAACTATTGAAACCAAGGTCG 58.187 34.615 0.00 0.00 0.00 4.79
4333 6375 2.288825 CCAAGGTCGTTTGAGCAGTAGA 60.289 50.000 0.00 0.00 45.10 2.59
4540 6665 7.655490 TCCCTCTGTAAACTAATATAAGACGC 58.345 38.462 0.00 0.00 0.00 5.19
4742 6867 5.221126 GGAAGAGAAGCTTTTGTCACATGTT 60.221 40.000 0.00 0.00 36.83 2.71
4745 6870 5.238214 AGAGAAGCTTTTGTCACATGTTCTC 59.762 40.000 0.00 2.03 39.20 2.87
4765 6890 1.264288 CAGTTGAGTTGCCGACTTTCC 59.736 52.381 0.00 0.00 39.19 3.13
4963 7088 9.736023 ACATCAAAAGAAAAGATACACTTGAAC 57.264 29.630 0.00 0.00 38.98 3.18
5025 7150 5.012148 ACAAGTAGCATTCAGTTCTACCACT 59.988 40.000 0.00 0.00 34.70 4.00
5075 7200 0.319405 AGTAGGGTTTGGGTCGAACG 59.681 55.000 0.00 0.00 0.00 3.95
5105 7230 6.408548 CCCTGGTATCATCACAATCTGTACTT 60.409 42.308 0.00 0.00 0.00 2.24
5150 7276 9.677567 TTGATGCTTGAAAGTATTGTAGTTTTC 57.322 29.630 0.00 0.00 31.23 2.29
5460 7587 3.217626 CAAGGACTTCAAAGAAGGCTGT 58.782 45.455 11.98 0.00 0.00 4.40
5484 7611 2.934553 CGACAGTGAGGTAGACGATACA 59.065 50.000 0.00 0.00 0.00 2.29
5658 7785 0.686224 AGAGCAAGCTGAGCTTCTGT 59.314 50.000 18.16 12.73 46.77 3.41
5673 7800 2.607750 TGTCCCCTCTGCCAGTCC 60.608 66.667 0.00 0.00 0.00 3.85
5839 7966 5.337571 CCATTTCTGGTAGAGTTACTGCAGA 60.338 44.000 23.35 0.48 37.79 4.26
5885 8012 8.896744 CATGATTTGAACTTCTGAGGCTTATTA 58.103 33.333 0.00 0.00 0.00 0.98
5889 8016 9.959721 ATTTGAACTTCTGAGGCTTATTAAGTA 57.040 29.630 5.38 0.00 0.00 2.24
5890 8017 8.773404 TTGAACTTCTGAGGCTTATTAAGTAC 57.227 34.615 5.38 0.00 0.00 2.73
5891 8018 8.135382 TGAACTTCTGAGGCTTATTAAGTACT 57.865 34.615 5.38 0.00 0.00 2.73
5892 8019 8.251721 TGAACTTCTGAGGCTTATTAAGTACTC 58.748 37.037 16.66 16.66 36.13 2.59
5893 8020 7.114866 ACTTCTGAGGCTTATTAAGTACTCC 57.885 40.000 18.90 8.09 35.31 3.85
5894 8021 6.098552 ACTTCTGAGGCTTATTAAGTACTCCC 59.901 42.308 18.90 7.82 35.31 4.30
5895 8022 5.778542 TCTGAGGCTTATTAAGTACTCCCT 58.221 41.667 18.90 11.27 35.31 4.20
5896 8023 5.834204 TCTGAGGCTTATTAAGTACTCCCTC 59.166 44.000 18.90 17.04 38.43 4.30
5897 8024 4.900054 TGAGGCTTATTAAGTACTCCCTCC 59.100 45.833 17.42 5.12 37.42 4.30
5898 8025 4.892198 AGGCTTATTAAGTACTCCCTCCA 58.108 43.478 0.00 0.00 0.00 3.86
5899 8026 5.477913 AGGCTTATTAAGTACTCCCTCCAT 58.522 41.667 0.00 0.00 0.00 3.41
5900 8027 5.544562 AGGCTTATTAAGTACTCCCTCCATC 59.455 44.000 0.00 0.00 0.00 3.51
5901 8028 5.280062 GGCTTATTAAGTACTCCCTCCATCC 60.280 48.000 0.00 0.00 0.00 3.51
5902 8029 5.307196 GCTTATTAAGTACTCCCTCCATCCA 59.693 44.000 0.00 0.00 0.00 3.41
5903 8030 6.013293 GCTTATTAAGTACTCCCTCCATCCAT 60.013 42.308 0.00 0.00 0.00 3.41
5904 8031 7.180408 GCTTATTAAGTACTCCCTCCATCCATA 59.820 40.741 0.00 0.00 0.00 2.74
5905 8032 8.666129 TTATTAAGTACTCCCTCCATCCATAG 57.334 38.462 0.00 0.00 0.00 2.23
5906 8033 4.561254 AAGTACTCCCTCCATCCATAGT 57.439 45.455 0.00 0.00 0.00 2.12
5907 8034 3.850752 AGTACTCCCTCCATCCATAGTG 58.149 50.000 0.00 0.00 0.00 2.74
5908 8035 2.877154 ACTCCCTCCATCCATAGTGT 57.123 50.000 0.00 0.00 0.00 3.55
5909 8036 3.993658 ACTCCCTCCATCCATAGTGTA 57.006 47.619 0.00 0.00 0.00 2.90
5910 8037 4.280789 ACTCCCTCCATCCATAGTGTAA 57.719 45.455 0.00 0.00 0.00 2.41
5911 8038 4.227197 ACTCCCTCCATCCATAGTGTAAG 58.773 47.826 0.00 0.00 0.00 2.34
5912 8039 2.972713 TCCCTCCATCCATAGTGTAAGC 59.027 50.000 0.00 0.00 0.00 3.09
5913 8040 2.039084 CCCTCCATCCATAGTGTAAGCC 59.961 54.545 0.00 0.00 0.00 4.35
5914 8041 2.289072 CCTCCATCCATAGTGTAAGCCG 60.289 54.545 0.00 0.00 0.00 5.52
5915 8042 2.365617 CTCCATCCATAGTGTAAGCCGT 59.634 50.000 0.00 0.00 0.00 5.68
5916 8043 2.769663 TCCATCCATAGTGTAAGCCGTT 59.230 45.455 0.00 0.00 0.00 4.44
5917 8044 3.199071 TCCATCCATAGTGTAAGCCGTTT 59.801 43.478 0.00 0.00 0.00 3.60
5918 8045 3.945285 CCATCCATAGTGTAAGCCGTTTT 59.055 43.478 0.00 0.00 0.00 2.43
5919 8046 4.398044 CCATCCATAGTGTAAGCCGTTTTT 59.602 41.667 0.00 0.00 0.00 1.94
6193 11342 1.267121 AGCCCTAAAAGACAGCGAGA 58.733 50.000 0.00 0.00 0.00 4.04
6210 11364 3.062639 GCGAGACAACATGGTCAACATAG 59.937 47.826 0.00 0.00 40.29 2.23
6242 11396 7.716123 TCCCAACGTTGAGATAAAAGAAGTAAA 59.284 33.333 29.35 0.00 0.00 2.01
6377 11571 8.336080 CAACTCACTAAGGTTCAAGTCTTAAAC 58.664 37.037 0.00 0.00 0.00 2.01
6401 11595 5.041951 TGACATTGGTGCTCGTATTTTTC 57.958 39.130 0.00 0.00 0.00 2.29
6403 11597 5.046910 ACATTGGTGCTCGTATTTTTCTG 57.953 39.130 0.00 0.00 0.00 3.02
6412 11606 9.010366 GGTGCTCGTATTTTTCTGAATTATTTC 57.990 33.333 0.00 0.00 0.00 2.17
6452 11668 1.000955 CTGGACTACTGAGCCGTTTGT 59.999 52.381 0.00 0.00 0.00 2.83
6453 11669 1.270094 TGGACTACTGAGCCGTTTGTG 60.270 52.381 0.00 0.00 0.00 3.33
6454 11670 1.000506 GGACTACTGAGCCGTTTGTGA 59.999 52.381 0.00 0.00 0.00 3.58
6455 11671 2.353803 GGACTACTGAGCCGTTTGTGAT 60.354 50.000 0.00 0.00 0.00 3.06
6456 11672 2.668457 GACTACTGAGCCGTTTGTGATG 59.332 50.000 0.00 0.00 0.00 3.07
6457 11673 2.299013 ACTACTGAGCCGTTTGTGATGA 59.701 45.455 0.00 0.00 0.00 2.92
6460 11676 1.728971 CTGAGCCGTTTGTGATGACTC 59.271 52.381 0.00 0.00 0.00 3.36
6488 11704 3.076621 TCTCAAAATGATGTGCTCGCTT 58.923 40.909 0.00 0.00 0.00 4.68
6494 11710 3.533606 ATGATGTGCTCGCTTAGTCTT 57.466 42.857 0.00 0.00 0.00 3.01
6501 11717 2.228103 TGCTCGCTTAGTCTTTCGAAGA 59.772 45.455 0.00 0.00 31.87 2.87
6506 11722 3.241784 CGCTTAGTCTTTCGAAGATGCTC 59.758 47.826 0.00 0.00 40.18 4.26
6511 11727 7.306515 GCTTAGTCTTTCGAAGATGCTCATAAG 60.307 40.741 0.00 2.63 40.18 1.73
6513 11729 6.039616 AGTCTTTCGAAGATGCTCATAAGAC 58.960 40.000 10.02 10.02 40.18 3.01
6523 11739 3.849911 TGCTCATAAGACTAGTGTGTGC 58.150 45.455 0.00 7.12 0.00 4.57
6524 11740 2.854777 GCTCATAAGACTAGTGTGTGCG 59.145 50.000 0.00 0.00 0.00 5.34
6525 11741 2.854777 CTCATAAGACTAGTGTGTGCGC 59.145 50.000 0.00 0.00 0.00 6.09
6528 11744 1.432514 AAGACTAGTGTGTGCGCATG 58.567 50.000 15.91 0.71 0.00 4.06
6529 11745 0.318441 AGACTAGTGTGTGCGCATGT 59.682 50.000 15.91 4.18 0.00 3.21
6532 11748 2.930040 GACTAGTGTGTGCGCATGTATT 59.070 45.455 15.91 2.29 0.00 1.89
6533 11749 2.930040 ACTAGTGTGTGCGCATGTATTC 59.070 45.455 15.91 0.00 0.00 1.75
6535 11751 2.358957 AGTGTGTGCGCATGTATTCAT 58.641 42.857 15.91 0.00 34.21 2.57
6551 11767 9.264719 CATGTATTCATGTGAGTGTATGTACAT 57.735 33.333 13.93 13.93 44.37 2.29
6563 11779 7.446013 TGAGTGTATGTACATATGTATGACCGA 59.554 37.037 18.27 0.00 38.63 4.69
6607 11831 1.215423 AGAAACAACCCTTGAGTGGCT 59.785 47.619 0.00 0.00 0.00 4.75
6611 11835 1.064017 ACAACCCTTGAGTGGCTGAAA 60.064 47.619 0.00 0.00 0.00 2.69
6621 11845 4.661222 TGAGTGGCTGAAATAAACCATCA 58.339 39.130 0.00 0.00 34.04 3.07
6622 11846 4.458989 TGAGTGGCTGAAATAAACCATCAC 59.541 41.667 0.00 0.00 34.04 3.06
6623 11847 4.666512 AGTGGCTGAAATAAACCATCACT 58.333 39.130 0.00 0.00 34.04 3.41
6624 11848 5.079643 AGTGGCTGAAATAAACCATCACTT 58.920 37.500 0.00 0.00 34.04 3.16
6625 11849 5.047802 AGTGGCTGAAATAAACCATCACTTG 60.048 40.000 0.00 0.00 34.04 3.16
6635 11859 1.656652 CCATCACTTGGGAAGCTACG 58.343 55.000 0.00 0.00 42.33 3.51
6636 11860 1.656652 CATCACTTGGGAAGCTACGG 58.343 55.000 0.00 0.00 0.00 4.02
6637 11861 1.207089 CATCACTTGGGAAGCTACGGA 59.793 52.381 0.00 0.00 0.00 4.69
6638 11862 0.895530 TCACTTGGGAAGCTACGGAG 59.104 55.000 0.00 0.00 0.00 4.63
6639 11863 0.895530 CACTTGGGAAGCTACGGAGA 59.104 55.000 0.00 0.00 0.00 3.71
6640 11864 1.275291 CACTTGGGAAGCTACGGAGAA 59.725 52.381 0.00 0.00 0.00 2.87
6641 11865 1.275573 ACTTGGGAAGCTACGGAGAAC 59.724 52.381 0.00 0.00 0.00 3.01
6642 11866 1.275291 CTTGGGAAGCTACGGAGAACA 59.725 52.381 0.00 0.00 0.00 3.18
6643 11867 1.568504 TGGGAAGCTACGGAGAACAT 58.431 50.000 0.00 0.00 0.00 2.71
6644 11868 1.207089 TGGGAAGCTACGGAGAACATG 59.793 52.381 0.00 0.00 0.00 3.21
6645 11869 1.291132 GGAAGCTACGGAGAACATGC 58.709 55.000 0.00 0.00 0.00 4.06
6646 11870 1.405526 GGAAGCTACGGAGAACATGCA 60.406 52.381 0.00 0.00 0.00 3.96
6647 11871 2.555199 GAAGCTACGGAGAACATGCAT 58.445 47.619 0.00 0.00 0.00 3.96
6648 11872 1.945387 AGCTACGGAGAACATGCATG 58.055 50.000 25.09 25.09 0.00 4.06
6649 11873 1.482182 AGCTACGGAGAACATGCATGA 59.518 47.619 32.75 6.99 0.00 3.07
6650 11874 2.103771 AGCTACGGAGAACATGCATGAT 59.896 45.455 32.75 22.02 0.00 2.45
6651 11875 2.222678 GCTACGGAGAACATGCATGATG 59.777 50.000 32.75 16.11 38.15 3.07
6652 11876 2.696989 ACGGAGAACATGCATGATGA 57.303 45.000 32.75 0.00 35.80 2.92
6653 11877 2.989909 ACGGAGAACATGCATGATGAA 58.010 42.857 32.75 0.00 35.80 2.57
6654 11878 3.346315 ACGGAGAACATGCATGATGAAA 58.654 40.909 32.75 0.00 35.80 2.69
6655 11879 3.949754 ACGGAGAACATGCATGATGAAAT 59.050 39.130 32.75 11.83 35.80 2.17
6656 11880 4.400251 ACGGAGAACATGCATGATGAAATT 59.600 37.500 32.75 15.31 35.80 1.82
6657 11881 5.105635 ACGGAGAACATGCATGATGAAATTT 60.106 36.000 32.75 14.56 35.80 1.82
6658 11882 5.457799 CGGAGAACATGCATGATGAAATTTC 59.542 40.000 32.75 21.65 35.80 2.17
6659 11883 6.334989 GGAGAACATGCATGATGAAATTTCA 58.665 36.000 32.75 22.52 42.14 2.69
6670 11894 3.824001 TGAAATTTCATGGTCCTGGGA 57.176 42.857 16.91 0.00 31.01 4.37
6671 11895 3.700538 TGAAATTTCATGGTCCTGGGAG 58.299 45.455 16.91 0.00 31.01 4.30
6672 11896 3.333381 TGAAATTTCATGGTCCTGGGAGA 59.667 43.478 16.91 0.00 31.01 3.71
6673 11897 3.372440 AATTTCATGGTCCTGGGAGAC 57.628 47.619 0.00 0.00 35.95 3.36
6674 11898 7.801590 TGAAATTTCATGGTCCTGGGAGACC 62.802 48.000 16.91 3.72 43.45 3.85
6690 11914 1.366366 ACCAACGGTCAGTTCTCGG 59.634 57.895 0.00 0.00 42.02 4.63
6691 11915 1.366366 CCAACGGTCAGTTCTCGGT 59.634 57.895 0.00 0.00 42.02 4.69
6692 11916 0.249741 CCAACGGTCAGTTCTCGGTT 60.250 55.000 0.00 0.00 42.02 4.44
6693 11917 1.137513 CAACGGTCAGTTCTCGGTTC 58.862 55.000 0.00 0.00 42.02 3.62
6694 11918 0.318445 AACGGTCAGTTCTCGGTTCG 60.318 55.000 0.00 0.00 39.16 3.95
6695 11919 2.087009 CGGTCAGTTCTCGGTTCGC 61.087 63.158 0.00 0.00 0.00 4.70
6696 11920 1.289380 GGTCAGTTCTCGGTTCGCT 59.711 57.895 0.00 0.00 0.00 4.93
6697 11921 0.733223 GGTCAGTTCTCGGTTCGCTC 60.733 60.000 0.00 0.00 0.00 5.03
6698 11922 0.039437 GTCAGTTCTCGGTTCGCTCA 60.039 55.000 0.00 0.00 0.00 4.26
6699 11923 0.241213 TCAGTTCTCGGTTCGCTCAG 59.759 55.000 0.00 0.00 0.00 3.35
6700 11924 1.080434 AGTTCTCGGTTCGCTCAGC 60.080 57.895 0.00 0.00 0.00 4.26
6701 11925 1.372997 GTTCTCGGTTCGCTCAGCA 60.373 57.895 0.00 0.00 0.00 4.41
6702 11926 0.737715 GTTCTCGGTTCGCTCAGCAT 60.738 55.000 0.00 0.00 0.00 3.79
6703 11927 0.815095 TTCTCGGTTCGCTCAGCATA 59.185 50.000 0.00 0.00 0.00 3.14
6704 11928 1.032794 TCTCGGTTCGCTCAGCATAT 58.967 50.000 0.00 0.00 0.00 1.78
6705 11929 1.135046 CTCGGTTCGCTCAGCATATG 58.865 55.000 0.00 0.00 0.00 1.78
6706 11930 0.875908 TCGGTTCGCTCAGCATATGC 60.876 55.000 20.36 20.36 42.49 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.290493 AGTTAGGCAATATCAACGATGGA 57.710 39.130 0.00 0.00 0.00 3.41
1 2 4.452455 GGAGTTAGGCAATATCAACGATGG 59.548 45.833 0.00 0.00 0.00 3.51
2 3 5.056480 TGGAGTTAGGCAATATCAACGATG 58.944 41.667 0.00 0.00 0.00 3.84
3 4 5.290493 TGGAGTTAGGCAATATCAACGAT 57.710 39.130 0.00 0.00 0.00 3.73
4 5 4.693283 CTGGAGTTAGGCAATATCAACGA 58.307 43.478 0.00 0.00 0.00 3.85
5 6 3.248602 GCTGGAGTTAGGCAATATCAACG 59.751 47.826 0.00 0.00 0.00 4.10
6 7 3.565902 GGCTGGAGTTAGGCAATATCAAC 59.434 47.826 0.00 0.00 42.34 3.18
7 8 3.459598 AGGCTGGAGTTAGGCAATATCAA 59.540 43.478 0.00 0.00 44.95 2.57
8 9 3.048600 AGGCTGGAGTTAGGCAATATCA 58.951 45.455 0.00 0.00 44.95 2.15
9 10 3.669536 GAGGCTGGAGTTAGGCAATATC 58.330 50.000 0.00 0.00 44.95 1.63
10 11 2.037772 CGAGGCTGGAGTTAGGCAATAT 59.962 50.000 0.00 0.00 44.95 1.28
11 12 1.412710 CGAGGCTGGAGTTAGGCAATA 59.587 52.381 0.00 0.00 44.95 1.90
12 13 0.179000 CGAGGCTGGAGTTAGGCAAT 59.821 55.000 0.00 0.00 44.95 3.56
13 14 0.902984 TCGAGGCTGGAGTTAGGCAA 60.903 55.000 0.00 0.00 44.95 4.52
14 15 0.902984 TTCGAGGCTGGAGTTAGGCA 60.903 55.000 0.00 0.00 44.95 4.75
15 16 0.179097 CTTCGAGGCTGGAGTTAGGC 60.179 60.000 0.00 0.00 43.04 3.93
16 17 1.135333 GTCTTCGAGGCTGGAGTTAGG 59.865 57.143 0.00 0.00 0.00 2.69
17 18 2.096248 AGTCTTCGAGGCTGGAGTTAG 58.904 52.381 0.00 0.00 0.00 2.34
18 19 2.093106 GAGTCTTCGAGGCTGGAGTTA 58.907 52.381 0.00 0.00 24.78 2.24
19 20 0.892063 GAGTCTTCGAGGCTGGAGTT 59.108 55.000 0.00 0.00 24.78 3.01
20 21 0.039035 AGAGTCTTCGAGGCTGGAGT 59.961 55.000 0.00 0.00 24.78 3.85
21 22 2.045561 TAGAGTCTTCGAGGCTGGAG 57.954 55.000 0.00 0.00 24.78 3.86
22 23 2.092375 TCATAGAGTCTTCGAGGCTGGA 60.092 50.000 0.00 0.00 24.78 3.86
23 24 2.293122 CTCATAGAGTCTTCGAGGCTGG 59.707 54.545 0.00 0.00 24.78 4.85
24 25 3.210227 TCTCATAGAGTCTTCGAGGCTG 58.790 50.000 15.03 0.00 24.78 4.85
25 26 3.569194 TCTCATAGAGTCTTCGAGGCT 57.431 47.619 15.03 0.00 29.26 4.58
26 27 5.001232 AGTATCTCATAGAGTCTTCGAGGC 58.999 45.833 15.03 8.51 0.00 4.70
27 28 6.072728 CCAAGTATCTCATAGAGTCTTCGAGG 60.073 46.154 15.03 0.00 0.00 4.63
28 29 6.708502 TCCAAGTATCTCATAGAGTCTTCGAG 59.291 42.308 0.00 5.07 0.00 4.04
29 30 6.592870 TCCAAGTATCTCATAGAGTCTTCGA 58.407 40.000 0.00 0.00 0.00 3.71
30 31 6.869315 TCCAAGTATCTCATAGAGTCTTCG 57.131 41.667 0.00 0.00 0.00 3.79
31 32 7.361713 CGGATCCAAGTATCTCATAGAGTCTTC 60.362 44.444 13.41 0.00 0.00 2.87
32 33 6.432783 CGGATCCAAGTATCTCATAGAGTCTT 59.567 42.308 13.41 0.00 0.00 3.01
33 34 5.943416 CGGATCCAAGTATCTCATAGAGTCT 59.057 44.000 13.41 0.00 0.00 3.24
34 35 5.124776 CCGGATCCAAGTATCTCATAGAGTC 59.875 48.000 13.41 0.00 0.00 3.36
35 36 5.013547 CCGGATCCAAGTATCTCATAGAGT 58.986 45.833 13.41 0.00 0.00 3.24
36 37 4.400884 CCCGGATCCAAGTATCTCATAGAG 59.599 50.000 13.41 0.00 0.00 2.43
37 38 4.202684 ACCCGGATCCAAGTATCTCATAGA 60.203 45.833 13.41 0.00 0.00 1.98
38 39 4.090090 ACCCGGATCCAAGTATCTCATAG 58.910 47.826 13.41 0.00 0.00 2.23
39 40 4.127918 ACCCGGATCCAAGTATCTCATA 57.872 45.455 13.41 0.00 0.00 2.15
40 41 2.977808 ACCCGGATCCAAGTATCTCAT 58.022 47.619 13.41 0.00 0.00 2.90
41 42 2.471815 ACCCGGATCCAAGTATCTCA 57.528 50.000 13.41 0.00 0.00 3.27
42 43 2.037381 GGAACCCGGATCCAAGTATCTC 59.963 54.545 18.31 2.98 36.92 2.75
43 44 2.047830 GGAACCCGGATCCAAGTATCT 58.952 52.381 18.31 0.00 36.92 1.98
44 45 2.545537 GGAACCCGGATCCAAGTATC 57.454 55.000 18.31 8.26 36.92 2.24
71 72 2.582052 CTTGGCCTTTGTTGTCCACTA 58.418 47.619 3.32 0.00 0.00 2.74
75 76 0.469144 TCCCTTGGCCTTTGTTGTCC 60.469 55.000 3.32 0.00 0.00 4.02
79 80 0.264657 AGGTTCCCTTGGCCTTTGTT 59.735 50.000 3.32 0.00 0.00 2.83
107 108 0.179034 CATCCCCTCAAGCCACTAGC 60.179 60.000 0.00 0.00 44.25 3.42
110 111 1.792757 TTGCATCCCCTCAAGCCACT 61.793 55.000 0.00 0.00 0.00 4.00
117 118 0.842030 AGGTGACTTGCATCCCCTCA 60.842 55.000 0.00 0.00 37.44 3.86
124 125 2.902486 TCTTGAGAGAGGTGACTTGCAT 59.098 45.455 0.00 0.00 44.43 3.96
133 134 4.405756 TCTAGGGTTTCTTGAGAGAGGT 57.594 45.455 0.00 0.00 32.44 3.85
212 224 0.461961 GGACGAGTGGCTCTGCTATT 59.538 55.000 0.00 0.00 0.00 1.73
218 230 1.004440 GCTTTGGACGAGTGGCTCT 60.004 57.895 0.00 0.00 0.00 4.09
221 233 4.090057 GCGCTTTGGACGAGTGGC 62.090 66.667 0.00 0.00 0.00 5.01
236 248 4.291783 TCTTTTGGATTTTAAACGGTGCG 58.708 39.130 0.00 0.00 0.00 5.34
253 265 8.156820 CCTAATTTCCCAAAACCTCATTCTTTT 58.843 33.333 0.00 0.00 0.00 2.27
257 269 6.210584 TCACCTAATTTCCCAAAACCTCATTC 59.789 38.462 0.00 0.00 0.00 2.67
258 270 6.081356 TCACCTAATTTCCCAAAACCTCATT 58.919 36.000 0.00 0.00 0.00 2.57
259 271 5.650283 TCACCTAATTTCCCAAAACCTCAT 58.350 37.500 0.00 0.00 0.00 2.90
264 277 6.649141 GGATGTTTCACCTAATTTCCCAAAAC 59.351 38.462 0.00 0.00 0.00 2.43
268 281 5.004361 TGGATGTTTCACCTAATTTCCCA 57.996 39.130 0.00 0.00 0.00 4.37
309 334 7.552687 GTGACATGGATCATACCAGAAACTAAA 59.447 37.037 0.00 0.00 43.49 1.85
312 337 5.431765 GTGACATGGATCATACCAGAAACT 58.568 41.667 0.00 0.00 43.49 2.66
379 406 7.926555 GGCTATTAGTGCAATACTCTACAGAAA 59.073 37.037 0.00 0.00 40.89 2.52
419 446 7.048512 GCTATAGTAGACCAAAGGTGTTTCAT 58.951 38.462 0.84 0.00 35.25 2.57
490 1746 6.373005 TGATTCATGTGTTTTAGAGGAGGA 57.627 37.500 0.00 0.00 0.00 3.71
518 1774 1.134946 GCATGGCGCAGAATTTTACCT 59.865 47.619 10.83 0.00 41.79 3.08
531 1787 6.974622 ACAAAGAGAAATAATAAAGCATGGCG 59.025 34.615 0.00 0.00 0.00 5.69
649 1910 8.973835 AAAAATATTTTTGCCTTGCATTCATG 57.026 26.923 22.30 0.00 38.76 3.07
672 1933 5.176590 GCCTTGCATTTCGTATTGTCAAAAA 59.823 36.000 0.00 0.00 0.00 1.94
718 1979 9.661954 AAATCTACTCTTCTCCCTCAATATACA 57.338 33.333 0.00 0.00 0.00 2.29
776 2176 5.680229 CGTGCTTCATTAGATTTTGAGATGC 59.320 40.000 0.00 0.00 0.00 3.91
964 2370 3.798511 GCGAGAGGGGAAAGGGGG 61.799 72.222 0.00 0.00 0.00 5.40
990 2396 1.227497 GAAGGCCATGGCGAGAGAG 60.227 63.158 29.90 0.00 43.06 3.20
991 2397 1.267574 AAGAAGGCCATGGCGAGAGA 61.268 55.000 29.90 0.00 43.06 3.10
1116 2522 1.079405 GACGGAGAAATGGCACGGA 60.079 57.895 0.00 0.00 0.00 4.69
1153 2559 1.273007 GCGATTTTAGCGCGACTCC 59.727 57.895 12.10 0.00 45.27 3.85
1170 2576 0.393808 TTCACGGGCATTAGGAAGGC 60.394 55.000 0.00 0.00 37.49 4.35
1332 2960 7.388500 AGCGTCAATTCAATTGGATTTTCAAAT 59.612 29.630 9.38 0.00 40.61 2.32
1335 2963 5.634439 CAGCGTCAATTCAATTGGATTTTCA 59.366 36.000 9.38 0.00 40.61 2.69
1385 3030 3.558829 CGCGTCCACTACTAGATAGAACA 59.441 47.826 0.00 0.00 34.65 3.18
1391 3036 1.783031 CGCCGCGTCCACTACTAGAT 61.783 60.000 4.92 0.00 0.00 1.98
1393 3038 2.024305 CGCCGCGTCCACTACTAG 59.976 66.667 4.92 0.00 0.00 2.57
1491 3136 1.068588 CCCGTCTGCAGGAAATCGATA 59.931 52.381 15.13 0.00 0.00 2.92
1536 3181 1.610327 CCGGTCCTCCAGAGAGAGA 59.390 63.158 0.00 0.00 43.39 3.10
1769 3414 2.146342 ACAAACCTTCGTCAGCTGATG 58.854 47.619 27.02 27.02 0.00 3.07
1790 3435 0.828677 ACGCTTCGCTAATTACCCCT 59.171 50.000 0.00 0.00 0.00 4.79
1802 3447 1.070577 CCTGACAAAGTGAACGCTTCG 60.071 52.381 1.12 0.00 0.00 3.79
1908 3553 4.264253 TCCAGAATTGCCACATGTCTTAG 58.736 43.478 0.00 0.00 0.00 2.18
1920 3568 2.548480 GCTACCGGTAATCCAGAATTGC 59.452 50.000 16.65 7.57 0.00 3.56
2025 3673 9.411189 GGTACCAATGATATTTACCCAGTTTTA 57.589 33.333 7.15 0.00 0.00 1.52
2088 3736 4.074970 GCAAATGGAAGAGGAGTTTGAGA 58.925 43.478 0.00 0.00 32.93 3.27
2189 3837 4.389890 AGCTGAGTGTTCAGATCTCATC 57.610 45.455 8.64 0.00 46.66 2.92
2221 3869 0.251354 AGCTGCGGACAGTGATCATT 59.749 50.000 0.00 0.00 46.30 2.57
2245 3894 2.197465 GTTAGGTTCCTGGGGACTGAT 58.803 52.381 1.12 0.00 0.00 2.90
2278 3927 0.889186 GGGCTTCTGTTTTGCTCGGA 60.889 55.000 0.00 0.00 0.00 4.55
2284 3933 5.514274 TTAAGACAAGGGCTTCTGTTTTG 57.486 39.130 0.00 0.00 0.00 2.44
2299 3948 6.621316 TCGGTAAAACTGCAAATTAAGACA 57.379 33.333 0.00 0.00 0.00 3.41
2316 3965 2.166459 CTCCATCTGCTCAGTTCGGTAA 59.834 50.000 0.00 0.00 0.00 2.85
2325 3974 0.616964 AGGTCTGCTCCATCTGCTCA 60.617 55.000 0.00 0.00 0.00 4.26
2405 4054 5.014202 ACAGCCAATTAAACCCTATCGTTT 58.986 37.500 0.00 0.00 39.28 3.60
2407 4056 4.230745 ACAGCCAATTAAACCCTATCGT 57.769 40.909 0.00 0.00 0.00 3.73
2424 4073 3.150647 AAGGCGGTGGCAAAACAGC 62.151 57.895 0.00 0.00 42.47 4.40
2445 4094 3.491447 GCATGCACTTTGGTCAGAAAAGT 60.491 43.478 14.21 0.00 46.25 2.66
2535 4184 3.900855 CAGCAGATGCCACCTCAC 58.099 61.111 0.14 0.00 43.38 3.51
2573 4223 4.135306 CTCTAATGATGAGCACCAGCAAT 58.865 43.478 1.35 0.00 45.12 3.56
2635 4292 7.868415 TCCACAAAATCATTTTAGGGTAAAACG 59.132 33.333 11.64 0.00 40.12 3.60
2661 4325 2.346365 GCCGGGACCTTCGAGTTT 59.654 61.111 2.18 0.00 0.00 2.66
2798 4559 1.068885 TCAATGCGCGAAATCCGTTTT 60.069 42.857 12.10 0.00 41.15 2.43
2843 4604 2.195741 AACTTAAAGGAAGGGCGGTC 57.804 50.000 0.00 0.00 39.74 4.79
2895 4656 1.067821 GTTCTACCTCAGCCTCGATGG 59.932 57.143 0.00 0.00 39.35 3.51
3056 4834 3.672781 GCTTTAACGAGCTCTACGAGGTT 60.673 47.826 12.85 9.67 40.67 3.50
3305 5083 1.490574 CCCTCCGTCATCTCCTTTCT 58.509 55.000 0.00 0.00 0.00 2.52
3348 5127 1.730612 CTTTTTAGGGTTCGCGTCCTC 59.269 52.381 18.24 5.72 34.75 3.71
3478 5259 1.228533 TCCGGCGGTTTTACAGTTTC 58.771 50.000 27.32 0.00 0.00 2.78
3593 5374 2.226962 ATCAGATGTTTGCTTGGCCT 57.773 45.000 3.32 0.00 0.00 5.19
3640 5421 7.125204 AGTGGAATTTCATGTTGAATCATCCAT 59.875 33.333 15.86 0.00 40.96 3.41
3694 5475 0.469892 AAAACTGGGCCTCCAACAGG 60.470 55.000 4.53 0.00 46.82 4.00
3695 5476 1.886542 GTAAAACTGGGCCTCCAACAG 59.113 52.381 4.53 3.13 43.51 3.16
3696 5477 1.479757 GGTAAAACTGGGCCTCCAACA 60.480 52.381 4.53 0.00 43.51 3.33
3697 5478 1.203013 AGGTAAAACTGGGCCTCCAAC 60.203 52.381 4.53 0.00 43.51 3.77
3698 5479 1.154430 AGGTAAAACTGGGCCTCCAA 58.846 50.000 4.53 0.00 43.51 3.53
3699 5480 1.154430 AAGGTAAAACTGGGCCTCCA 58.846 50.000 4.53 0.00 41.58 3.86
3740 5521 8.673711 GGCTACAGAACATCATTGTGTTAATTA 58.326 33.333 0.00 0.00 42.08 1.40
3789 5744 7.928167 CAGAATCTACACTAGTGGCAATCATTA 59.072 37.037 26.12 6.61 34.19 1.90
3820 5775 3.901844 AGACAAGTGGTTACTAAGAGGCA 59.098 43.478 0.00 0.00 35.69 4.75
3846 5801 7.174253 GGTATCCATCTAACAAAACTGACACAA 59.826 37.037 0.00 0.00 0.00 3.33
3873 5828 6.548993 GGAGCATAAGATGAGGGAATTTCTTT 59.451 38.462 0.00 0.00 31.29 2.52
3889 5844 1.748591 GCAAGACTGGGGGAGCATAAG 60.749 57.143 0.00 0.00 0.00 1.73
3903 5858 2.206576 AGGGAAAGTGGATGCAAGAC 57.793 50.000 0.00 0.00 0.00 3.01
4013 5987 0.841289 AGGTTCGGTGAGTTTTGGGA 59.159 50.000 0.00 0.00 0.00 4.37
4097 6071 2.095372 GGTGATCCTTTTCGGTAAAGCG 59.905 50.000 1.95 0.00 41.60 4.68
4103 6077 0.999712 ATGGGGTGATCCTTTTCGGT 59.000 50.000 0.00 0.00 35.33 4.69
4254 6228 8.181573 TCTTGCGGTTTCAATAGTTATTTCATC 58.818 33.333 0.00 0.00 0.00 2.92
4255 6229 7.968405 GTCTTGCGGTTTCAATAGTTATTTCAT 59.032 33.333 0.00 0.00 0.00 2.57
4256 6230 7.041030 TGTCTTGCGGTTTCAATAGTTATTTCA 60.041 33.333 0.00 0.00 0.00 2.69
4257 6231 7.302524 TGTCTTGCGGTTTCAATAGTTATTTC 58.697 34.615 0.00 0.00 0.00 2.17
4258 6232 7.209471 TGTCTTGCGGTTTCAATAGTTATTT 57.791 32.000 0.00 0.00 0.00 1.40
4261 6235 6.621316 TTTGTCTTGCGGTTTCAATAGTTA 57.379 33.333 0.00 0.00 0.00 2.24
4262 6236 5.508200 TTTGTCTTGCGGTTTCAATAGTT 57.492 34.783 0.00 0.00 0.00 2.24
4263 6237 5.705609 ATTTGTCTTGCGGTTTCAATAGT 57.294 34.783 0.00 0.00 0.00 2.12
4265 6239 6.507900 TGAAATTTGTCTTGCGGTTTCAATA 58.492 32.000 0.00 0.00 33.97 1.90
4268 6242 4.377839 TGAAATTTGTCTTGCGGTTTCA 57.622 36.364 0.00 0.00 34.35 2.69
4269 6243 5.387342 CGAATGAAATTTGTCTTGCGGTTTC 60.387 40.000 0.00 0.00 36.07 2.78
4270 6244 4.444056 CGAATGAAATTTGTCTTGCGGTTT 59.556 37.500 0.00 0.00 36.07 3.27
4311 6353 0.180406 ACTGCTCAAACGACCTTGGT 59.820 50.000 0.00 0.00 0.00 3.67
4320 6362 4.319177 AGGAACACATCTACTGCTCAAAC 58.681 43.478 0.00 0.00 0.00 2.93
4333 6375 3.767309 AGAGAGGGTCTAGGAACACAT 57.233 47.619 0.00 0.00 31.71 3.21
4718 6843 4.276926 ACATGTGACAAAAGCTTCTCTTCC 59.723 41.667 0.00 0.00 32.88 3.46
4742 6867 1.040646 AGTCGGCAACTCAACTGAGA 58.959 50.000 13.61 0.00 44.74 3.27
4745 6870 1.264288 GGAAAGTCGGCAACTCAACTG 59.736 52.381 0.00 0.00 37.17 3.16
4765 6890 5.157067 ACATCGATCATATAGCTGTCAACG 58.843 41.667 0.00 0.00 0.00 4.10
4798 6923 2.422945 GGGTCAGACCACCAGAAAAACT 60.423 50.000 21.75 0.00 41.02 2.66
4963 7088 0.460987 CTTGCTTAGCCCTCACTCGG 60.461 60.000 0.29 0.00 0.00 4.63
5075 7200 4.422073 TTGTGATGATACCAGGGATGAC 57.578 45.455 0.00 0.00 0.00 3.06
5105 7230 9.328845 AGCATCAAAGCAAGATTTCTTTTTAAA 57.671 25.926 0.00 0.00 36.85 1.52
5125 7250 8.296713 GGAAAACTACAATACTTTCAAGCATCA 58.703 33.333 0.00 0.00 30.89 3.07
5150 7276 4.749598 GCCAGTTAAACCATTTTTGTCAGG 59.250 41.667 0.00 0.00 0.00 3.86
5460 7587 1.583495 CGTCTACCTCACTGTCGCCA 61.583 60.000 0.00 0.00 0.00 5.69
5469 7596 2.885266 GGATGCTGTATCGTCTACCTCA 59.115 50.000 0.00 0.00 36.62 3.86
5658 7785 2.039624 GAGGACTGGCAGAGGGGA 59.960 66.667 23.66 0.00 0.00 4.81
5673 7800 3.474600 CTCCATGCCAAGTATCTTGGAG 58.525 50.000 26.37 13.97 43.51 3.86
5839 7966 6.233434 TCATGCACTTGTAATCAGAAGTTCT 58.767 36.000 0.00 0.00 36.18 3.01
5885 8012 4.227197 CACTATGGATGGAGGGAGTACTT 58.773 47.826 0.00 0.00 0.00 2.24
5889 8016 2.877154 ACACTATGGATGGAGGGAGT 57.123 50.000 0.00 0.00 0.00 3.85
5890 8017 3.007398 GCTTACACTATGGATGGAGGGAG 59.993 52.174 0.00 0.00 0.00 4.30
5891 8018 2.972713 GCTTACACTATGGATGGAGGGA 59.027 50.000 0.00 0.00 0.00 4.20
5892 8019 2.039084 GGCTTACACTATGGATGGAGGG 59.961 54.545 0.00 0.00 0.00 4.30
5893 8020 2.289072 CGGCTTACACTATGGATGGAGG 60.289 54.545 0.00 0.00 0.00 4.30
5894 8021 2.365617 ACGGCTTACACTATGGATGGAG 59.634 50.000 0.00 0.00 0.00 3.86
5895 8022 2.394632 ACGGCTTACACTATGGATGGA 58.605 47.619 0.00 0.00 0.00 3.41
5896 8023 2.910688 ACGGCTTACACTATGGATGG 57.089 50.000 0.00 0.00 0.00 3.51
5897 8024 5.560966 AAAAACGGCTTACACTATGGATG 57.439 39.130 0.00 0.00 0.00 3.51
6000 8135 5.391312 AAATGCAGGACACTAACCATTTC 57.609 39.130 0.00 0.00 30.18 2.17
6193 11342 4.713553 TGTCACTATGTTGACCATGTTGT 58.286 39.130 6.17 0.00 44.63 3.32
6210 11364 2.163818 TCTCAACGTTGGGATGTCAC 57.836 50.000 26.70 0.00 31.45 3.67
6242 11396 4.630894 TTCTTTTCTCATGTTGCGTTGT 57.369 36.364 0.00 0.00 0.00 3.32
6353 11547 7.793036 AGTTTAAGACTTGAACCTTAGTGAGT 58.207 34.615 16.77 0.00 33.92 3.41
6377 11571 4.685169 AAATACGAGCACCAATGTCAAG 57.315 40.909 0.00 0.00 0.00 3.02
6422 11616 6.116126 GGCTCAGTAGTCCAGAAACATTATT 58.884 40.000 0.00 0.00 0.00 1.40
6432 11626 1.000955 ACAAACGGCTCAGTAGTCCAG 59.999 52.381 0.00 0.00 0.00 3.86
6434 11628 1.000506 TCACAAACGGCTCAGTAGTCC 59.999 52.381 0.00 0.00 0.00 3.85
6438 11654 2.299013 AGTCATCACAAACGGCTCAGTA 59.701 45.455 0.00 0.00 0.00 2.74
6454 11670 7.560262 ACATCATTTTGAGATTGATGGAGTCAT 59.440 33.333 14.53 0.00 44.60 3.06
6455 11671 6.888088 ACATCATTTTGAGATTGATGGAGTCA 59.112 34.615 14.53 0.00 44.60 3.41
6456 11672 7.194278 CACATCATTTTGAGATTGATGGAGTC 58.806 38.462 14.53 0.00 44.60 3.36
6457 11673 6.405508 GCACATCATTTTGAGATTGATGGAGT 60.406 38.462 14.53 0.00 44.60 3.85
6460 11676 5.902681 AGCACATCATTTTGAGATTGATGG 58.097 37.500 14.53 6.65 44.60 3.51
6464 11680 3.789756 GCGAGCACATCATTTTGAGATTG 59.210 43.478 0.00 0.00 0.00 2.67
6473 11689 3.533606 AGACTAAGCGAGCACATCATT 57.466 42.857 0.00 0.00 0.00 2.57
6476 11692 2.280183 CGAAAGACTAAGCGAGCACATC 59.720 50.000 0.00 0.00 0.00 3.06
6488 11704 7.067615 AGTCTTATGAGCATCTTCGAAAGACTA 59.932 37.037 16.24 0.00 43.05 2.59
6494 11710 6.095580 ACACTAGTCTTATGAGCATCTTCGAA 59.904 38.462 0.00 0.00 34.92 3.71
6501 11717 4.437239 GCACACACTAGTCTTATGAGCAT 58.563 43.478 0.00 0.00 0.00 3.79
6506 11722 2.606108 TGCGCACACACTAGTCTTATG 58.394 47.619 5.66 0.00 0.00 1.90
6511 11727 1.990799 TACATGCGCACACACTAGTC 58.009 50.000 14.90 0.00 0.00 2.59
6513 11729 2.929398 TGAATACATGCGCACACACTAG 59.071 45.455 14.90 0.00 0.00 2.57
6525 11741 9.264719 ATGTACATACACTCACATGAATACATG 57.735 33.333 6.56 8.38 46.87 3.21
6532 11748 9.912634 CATACATATGTACATACACTCACATGA 57.087 33.333 17.69 2.68 39.30 3.07
6533 11749 9.912634 TCATACATATGTACATACACTCACATG 57.087 33.333 17.69 12.51 39.30 3.21
6535 11751 8.357402 GGTCATACATATGTACATACACTCACA 58.643 37.037 17.69 0.00 39.30 3.58
6536 11752 7.537649 CGGTCATACATATGTACATACACTCAC 59.462 40.741 17.69 10.05 39.30 3.51
6537 11753 7.446013 TCGGTCATACATATGTACATACACTCA 59.554 37.037 17.69 0.00 39.30 3.41
6551 11767 5.179929 CACGGTACATAGTCGGTCATACATA 59.820 44.000 0.00 0.00 0.00 2.29
6586 11802 1.609072 GCCACTCAAGGGTTGTTTCTC 59.391 52.381 0.00 0.00 0.00 2.87
6587 11803 1.215423 AGCCACTCAAGGGTTGTTTCT 59.785 47.619 0.00 0.00 35.44 2.52
6588 11804 1.338020 CAGCCACTCAAGGGTTGTTTC 59.662 52.381 0.00 0.00 37.26 2.78
6589 11805 1.064017 TCAGCCACTCAAGGGTTGTTT 60.064 47.619 0.00 0.00 37.26 2.83
6599 11823 4.458989 GTGATGGTTTATTTCAGCCACTCA 59.541 41.667 0.00 0.00 33.42 3.41
6600 11824 4.702131 AGTGATGGTTTATTTCAGCCACTC 59.298 41.667 0.00 0.00 33.42 3.51
6621 11845 1.275573 GTTCTCCGTAGCTTCCCAAGT 59.724 52.381 0.00 0.00 0.00 3.16
6622 11846 1.275291 TGTTCTCCGTAGCTTCCCAAG 59.725 52.381 0.00 0.00 0.00 3.61
6623 11847 1.344065 TGTTCTCCGTAGCTTCCCAA 58.656 50.000 0.00 0.00 0.00 4.12
6624 11848 1.207089 CATGTTCTCCGTAGCTTCCCA 59.793 52.381 0.00 0.00 0.00 4.37
6625 11849 1.941325 CATGTTCTCCGTAGCTTCCC 58.059 55.000 0.00 0.00 0.00 3.97
6626 11850 1.291132 GCATGTTCTCCGTAGCTTCC 58.709 55.000 0.00 0.00 0.00 3.46
6627 11851 2.010145 TGCATGTTCTCCGTAGCTTC 57.990 50.000 0.00 0.00 0.00 3.86
6628 11852 2.093500 TCATGCATGTTCTCCGTAGCTT 60.093 45.455 25.43 0.00 0.00 3.74
6629 11853 1.482182 TCATGCATGTTCTCCGTAGCT 59.518 47.619 25.43 0.00 0.00 3.32
6630 11854 1.939974 TCATGCATGTTCTCCGTAGC 58.060 50.000 25.43 0.00 0.00 3.58
6631 11855 3.721035 TCATCATGCATGTTCTCCGTAG 58.279 45.455 25.43 4.83 33.66 3.51
6632 11856 3.817709 TCATCATGCATGTTCTCCGTA 57.182 42.857 25.43 4.73 33.66 4.02
6633 11857 2.696989 TCATCATGCATGTTCTCCGT 57.303 45.000 25.43 2.79 33.66 4.69
6634 11858 4.563337 ATTTCATCATGCATGTTCTCCG 57.437 40.909 25.43 6.54 33.66 4.63
6635 11859 6.334989 TGAAATTTCATCATGCATGTTCTCC 58.665 36.000 25.43 8.42 33.66 3.71
6636 11860 7.841486 CATGAAATTTCATCATGCATGTTCTC 58.159 34.615 27.08 12.20 45.62 2.87
6637 11861 7.770801 CATGAAATTTCATCATGCATGTTCT 57.229 32.000 27.08 9.64 45.62 3.01
6646 11870 4.652421 CCCAGGACCATGAAATTTCATCAT 59.348 41.667 27.08 18.95 45.62 2.45
6647 11871 4.025360 CCCAGGACCATGAAATTTCATCA 58.975 43.478 27.08 5.74 45.62 3.07
6648 11872 4.280819 TCCCAGGACCATGAAATTTCATC 58.719 43.478 27.08 18.38 45.62 2.92
6650 11874 3.333381 TCTCCCAGGACCATGAAATTTCA 59.667 43.478 22.52 22.52 42.14 2.69
6651 11875 3.696548 GTCTCCCAGGACCATGAAATTTC 59.303 47.826 11.41 11.41 0.00 2.17
6652 11876 3.701664 GTCTCCCAGGACCATGAAATTT 58.298 45.455 0.00 0.00 0.00 1.82
6653 11877 3.372440 GTCTCCCAGGACCATGAAATT 57.628 47.619 0.00 0.00 0.00 1.82
6662 11886 2.214920 ACCGTTGGTCTCCCAGGAC 61.215 63.158 0.00 0.00 43.15 3.85
6663 11887 2.203182 ACCGTTGGTCTCCCAGGA 59.797 61.111 0.00 0.00 43.15 3.86
6672 11896 1.366366 CCGAGAACTGACCGTTGGT 59.634 57.895 0.00 0.00 39.44 3.67
6673 11897 0.249741 AACCGAGAACTGACCGTTGG 60.250 55.000 0.00 0.00 35.56 3.77
6674 11898 1.137513 GAACCGAGAACTGACCGTTG 58.862 55.000 0.00 0.00 35.56 4.10
6675 11899 0.318445 CGAACCGAGAACTGACCGTT 60.318 55.000 0.00 0.00 38.91 4.44
6676 11900 1.285023 CGAACCGAGAACTGACCGT 59.715 57.895 0.00 0.00 0.00 4.83
6677 11901 2.087009 GCGAACCGAGAACTGACCG 61.087 63.158 0.00 0.00 0.00 4.79
6678 11902 0.733223 GAGCGAACCGAGAACTGACC 60.733 60.000 0.00 0.00 0.00 4.02
6679 11903 0.039437 TGAGCGAACCGAGAACTGAC 60.039 55.000 0.00 0.00 0.00 3.51
6680 11904 0.241213 CTGAGCGAACCGAGAACTGA 59.759 55.000 0.00 0.00 0.00 3.41
6681 11905 1.347817 GCTGAGCGAACCGAGAACTG 61.348 60.000 0.00 0.00 0.00 3.16
6682 11906 1.080434 GCTGAGCGAACCGAGAACT 60.080 57.895 0.00 0.00 0.00 3.01
6683 11907 0.737715 ATGCTGAGCGAACCGAGAAC 60.738 55.000 0.00 0.00 0.00 3.01
6684 11908 0.815095 TATGCTGAGCGAACCGAGAA 59.185 50.000 0.00 0.00 0.00 2.87
6685 11909 1.032794 ATATGCTGAGCGAACCGAGA 58.967 50.000 0.00 0.00 0.00 4.04
6686 11910 1.135046 CATATGCTGAGCGAACCGAG 58.865 55.000 0.00 0.00 0.00 4.63
6687 11911 0.875908 GCATATGCTGAGCGAACCGA 60.876 55.000 20.64 0.00 38.21 4.69
6688 11912 1.566563 GCATATGCTGAGCGAACCG 59.433 57.895 20.64 0.00 38.21 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.