Multiple sequence alignment - TraesCS4B01G214000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G214000 chr4B 100.000 7188 0 0 1 7188 453254085 453246898 0.000000e+00 13274.0
1 TraesCS4B01G214000 chr4B 100.000 52 0 0 6451 6502 311013940 311013991 5.940000e-16 97.1
2 TraesCS4B01G214000 chr4B 96.429 56 1 1 6451 6506 541921501 541921555 2.760000e-14 91.6
3 TraesCS4B01G214000 chr4B 78.505 107 16 4 3421 3526 253704022 253703922 6.020000e-06 63.9
4 TraesCS4B01G214000 chr4D 93.249 3066 117 34 522 3543 368011716 368008697 0.000000e+00 4433.0
5 TraesCS4B01G214000 chr4D 95.176 1078 45 5 5348 6420 368008474 368007399 0.000000e+00 1696.0
6 TraesCS4B01G214000 chr4D 87.664 381 21 9 113 490 368012071 368011714 3.100000e-113 420.0
7 TraesCS4B01G214000 chr4D 89.091 220 17 4 6973 7188 368006630 368006414 4.270000e-67 267.0
8 TraesCS4B01G214000 chr4D 96.154 78 3 0 6423 6500 365398767 365398690 2.100000e-25 128.0
9 TraesCS4B01G214000 chr4D 90.789 76 3 2 44 118 368012181 368012109 1.650000e-16 99.0
10 TraesCS4B01G214000 chr4D 98.113 53 0 1 6451 6503 379164286 379164235 2.760000e-14 91.6
11 TraesCS4B01G214000 chr4D 98.077 52 1 0 6451 6502 450206716 450206665 2.760000e-14 91.6
12 TraesCS4B01G214000 chr4D 96.296 54 2 0 6451 6504 53188079 53188132 9.930000e-14 89.8
13 TraesCS4B01G214000 chr4D 96.364 55 1 1 6449 6502 509340325 509340379 9.930000e-14 89.8
14 TraesCS4B01G214000 chr4D 83.178 107 6 9 3421 3524 362116410 362116507 3.570000e-13 87.9
15 TraesCS4B01G214000 chr4D 80.734 109 10 7 3421 3526 210457865 210457765 2.780000e-09 75.0
16 TraesCS4B01G214000 chr4D 90.909 55 4 1 3450 3504 356565167 356565220 1.000000e-08 73.1
17 TraesCS4B01G214000 chr4D 95.455 44 2 0 3477 3520 17861262 17861305 3.600000e-08 71.3
18 TraesCS4B01G214000 chr4D 95.238 42 2 0 3482 3523 322662549 322662508 4.650000e-07 67.6
19 TraesCS4B01G214000 chr4D 89.091 55 3 3 3475 3526 281208500 281208554 1.670000e-06 65.8
20 TraesCS4B01G214000 chr4D 95.122 41 2 0 3483 3523 320044218 320044258 1.670000e-06 65.8
21 TraesCS4B01G214000 chr4D 84.375 64 10 0 3473 3536 379169367 379169430 6.020000e-06 63.9
22 TraesCS4B01G214000 chr4A 93.836 2401 91 25 520 2884 97252872 97255251 0.000000e+00 3561.0
23 TraesCS4B01G214000 chr4A 95.442 1075 41 6 5348 6420 97258850 97259918 0.000000e+00 1707.0
24 TraesCS4B01G214000 chr4A 94.681 470 14 5 3002 3470 97258246 97258705 0.000000e+00 719.0
25 TraesCS4B01G214000 chr4A 90.000 220 18 2 6973 7188 97260558 97260777 1.530000e-71 281.0
26 TraesCS4B01G214000 chr4A 92.308 143 7 1 146 288 97252583 97252721 4.400000e-47 200.0
27 TraesCS4B01G214000 chr4A 90.278 72 5 2 6451 6520 649897927 649897856 7.680000e-15 93.5
28 TraesCS4B01G214000 chr4A 82.075 106 10 6 3421 3524 638173355 638173453 1.660000e-11 82.4
29 TraesCS4B01G214000 chr4A 84.337 83 1 2 387 469 97252776 97252846 3.600000e-08 71.3
30 TraesCS4B01G214000 chr6B 93.899 1803 88 9 3540 5322 502312716 502314516 0.000000e+00 2700.0
31 TraesCS4B01G214000 chr6B 89.684 1454 139 7 3845 5296 349228030 349229474 0.000000e+00 1844.0
32 TraesCS4B01G214000 chr6B 94.534 1116 59 2 3537 4650 19037762 19038877 0.000000e+00 1722.0
33 TraesCS4B01G214000 chr6B 93.266 698 46 1 4639 5336 346317647 346318343 0.000000e+00 1027.0
34 TraesCS4B01G214000 chr6B 92.208 77 0 3 6423 6499 129241255 129241325 3.550000e-18 104.0
35 TraesCS4B01G214000 chr6B 95.000 60 1 2 6451 6509 661923897 661923839 7.680000e-15 93.5
36 TraesCS4B01G214000 chr6B 92.308 65 3 2 6452 6516 599445665 599445603 2.760000e-14 91.6
37 TraesCS4B01G214000 chr1B 93.289 1803 101 14 3540 5322 605466599 605464797 0.000000e+00 2641.0
38 TraesCS4B01G214000 chr1B 94.449 1117 59 3 3543 4656 279911881 279910765 0.000000e+00 1716.0
39 TraesCS4B01G214000 chr1B 91.702 1181 64 4 4174 5322 321881179 321880001 0.000000e+00 1607.0
40 TraesCS4B01G214000 chr1B 93.787 676 40 2 4648 5322 672183797 672183123 0.000000e+00 1014.0
41 TraesCS4B01G214000 chr1B 96.491 57 1 1 6451 6507 289231430 289231375 7.680000e-15 93.5
42 TraesCS4B01G214000 chr7B 92.921 1780 122 3 3543 5320 45059492 45061269 0.000000e+00 2586.0
43 TraesCS4B01G214000 chr7B 92.204 1783 118 11 3543 5322 374315341 374317105 0.000000e+00 2503.0
44 TraesCS4B01G214000 chr7B 93.512 1156 69 6 3543 4692 188935667 188936822 0.000000e+00 1714.0
45 TraesCS4B01G214000 chr7B 96.552 58 1 1 6451 6507 733804774 733804717 2.130000e-15 95.3
46 TraesCS4B01G214000 chr7B 84.314 102 6 7 3425 3524 569937970 569937877 2.760000e-14 91.6
47 TraesCS4B01G214000 chr7B 86.747 83 5 3 3450 3532 657660068 657659992 3.570000e-13 87.9
48 TraesCS4B01G214000 chr2B 92.837 1801 93 19 3543 5322 441877766 441879551 0.000000e+00 2579.0
49 TraesCS4B01G214000 chr2B 92.919 692 48 1 4632 5322 464439324 464440015 0.000000e+00 1005.0
50 TraesCS4B01G214000 chr2B 100.000 53 0 0 6451 6503 166835533 166835585 1.650000e-16 99.0
51 TraesCS4B01G214000 chr2B 81.481 108 10 8 3422 3526 122712447 122712547 5.980000e-11 80.5
52 TraesCS4B01G214000 chr3B 95.845 1107 44 2 3540 4644 574700755 574701861 0.000000e+00 1788.0
53 TraesCS4B01G214000 chr3B 91.471 938 77 3 4256 5191 723631711 723632647 0.000000e+00 1286.0
54 TraesCS4B01G214000 chr3B 91.358 81 4 3 6420 6499 62010446 62010524 2.740000e-19 108.0
55 TraesCS4B01G214000 chr3B 91.026 78 4 3 6423 6499 61290431 61290506 1.280000e-17 102.0
56 TraesCS4B01G214000 chr3B 89.157 83 5 4 6419 6499 67913278 67913358 4.590000e-17 100.0
57 TraesCS4B01G214000 chr3B 90.541 74 7 0 1318 1391 40236262 40236335 1.650000e-16 99.0
58 TraesCS4B01G214000 chr3B 83.333 108 8 6 3423 3527 60259655 60259755 2.760000e-14 91.6
59 TraesCS4B01G214000 chr3B 88.312 77 3 4 6423 6499 773045466 773045536 3.570000e-13 87.9
60 TraesCS4B01G214000 chr3B 82.692 104 11 2 3424 3526 696979171 696979268 1.280000e-12 86.1
61 TraesCS4B01G214000 chr5B 92.028 1129 81 8 4174 5296 124770015 124768890 0.000000e+00 1578.0
62 TraesCS4B01G214000 chr5B 93.713 684 43 0 4639 5322 94094759 94094076 0.000000e+00 1026.0
63 TraesCS4B01G214000 chr5B 92.683 82 2 4 6423 6503 339425838 339425760 1.640000e-21 115.0
64 TraesCS4B01G214000 chr5B 97.368 38 1 0 7 44 635361962 635361925 1.670000e-06 65.8
65 TraesCS4B01G214000 chr6A 81.771 192 29 3 3143 3333 9357919 9358105 9.650000e-34 156.0
66 TraesCS4B01G214000 chr7A 93.827 81 4 1 6422 6502 733336959 733336880 3.520000e-23 121.0
67 TraesCS4B01G214000 chr7A 94.643 56 2 1 6451 6506 48622611 48622557 1.280000e-12 86.1
68 TraesCS4B01G214000 chr2A 92.683 82 4 2 6418 6499 705538909 705538830 4.560000e-22 117.0
69 TraesCS4B01G214000 chr2A 92.453 53 4 0 1 53 779492308 779492256 7.730000e-10 76.8
70 TraesCS4B01G214000 chr2A 92.308 52 4 0 1 52 779599950 779599899 2.780000e-09 75.0
71 TraesCS4B01G214000 chr2D 96.825 63 2 0 1939 2001 99686223 99686285 9.860000e-19 106.0
72 TraesCS4B01G214000 chr2D 97.222 36 1 0 7 42 374111922 374111887 2.170000e-05 62.1
73 TraesCS4B01G214000 chr3D 89.286 84 7 2 1309 1391 23058285 23058367 3.550000e-18 104.0
74 TraesCS4B01G214000 chr3D 95.238 63 3 0 1939 2001 560194802 560194740 4.590000e-17 100.0
75 TraesCS4B01G214000 chr3D 98.039 51 1 0 3473 3523 381989108 381989158 9.930000e-14 89.8
76 TraesCS4B01G214000 chr3D 83.019 106 8 7 3422 3524 375212267 375212365 3.570000e-13 87.9
77 TraesCS4B01G214000 chr3D 89.394 66 7 0 3473 3538 157099407 157099342 4.620000e-12 84.2
78 TraesCS4B01G214000 chr3A 89.286 84 7 2 1309 1391 32146625 32146707 3.550000e-18 104.0
79 TraesCS4B01G214000 chr3A 83.178 107 9 4 3422 3526 661792643 661792742 9.930000e-14 89.8
80 TraesCS4B01G214000 chr3A 90.000 70 5 2 6447 6515 743872102 743872034 9.930000e-14 89.8
81 TraesCS4B01G214000 chr3A 81.553 103 15 4 3422 3523 109987785 109987884 1.660000e-11 82.4
82 TraesCS4B01G214000 chr5D 100.000 54 0 0 6451 6504 266073249 266073302 4.590000e-17 100.0
83 TraesCS4B01G214000 chr5D 98.148 54 1 0 6446 6499 559427769 559427822 2.130000e-15 95.3
84 TraesCS4B01G214000 chr5D 96.078 51 2 0 3473 3523 60081607 60081657 4.620000e-12 84.2
85 TraesCS4B01G214000 chr5D 81.905 105 10 4 3422 3524 142904990 142905087 5.980000e-11 80.5
86 TraesCS4B01G214000 chr5D 94.340 53 2 1 3481 3532 432784409 432784357 5.980000e-11 80.5
87 TraesCS4B01G214000 chr5D 92.727 55 3 1 3473 3526 457676073 457676019 2.150000e-10 78.7
88 TraesCS4B01G214000 chr5D 82.796 93 7 8 3421 3511 533865227 533865142 2.780000e-09 75.0
89 TraesCS4B01G214000 chr7D 100.000 52 0 0 6451 6502 568753415 568753364 5.940000e-16 97.1
90 TraesCS4B01G214000 chr7D 98.148 54 0 1 6451 6504 174803207 174803259 7.680000e-15 93.5
91 TraesCS4B01G214000 chr7D 89.610 77 1 3 6423 6499 2237667 2237598 2.760000e-14 91.6
92 TraesCS4B01G214000 chr7D 96.364 55 0 2 6447 6499 638017584 638017638 9.930000e-14 89.8
93 TraesCS4B01G214000 chr7D 81.731 104 10 7 3422 3523 413545592 413545688 2.150000e-10 78.7
94 TraesCS4B01G214000 chr1A 100.000 52 0 0 6451 6502 449510050 449509999 5.940000e-16 97.1
95 TraesCS4B01G214000 chr1A 98.148 54 0 1 6451 6503 134973547 134973600 7.680000e-15 93.5
96 TraesCS4B01G214000 chr1A 98.148 54 0 1 6451 6504 241076245 241076193 7.680000e-15 93.5
97 TraesCS4B01G214000 chr1A 100.000 50 0 0 6450 6499 534535143 534535192 7.680000e-15 93.5
98 TraesCS4B01G214000 chr1A 96.429 56 1 1 6451 6506 466345395 466345341 2.760000e-14 91.6
99 TraesCS4B01G214000 chr1A 83.019 106 11 2 3422 3526 516728831 516728930 9.930000e-14 89.8
100 TraesCS4B01G214000 chr1A 94.118 51 3 0 3474 3524 564146598 564146548 2.150000e-10 78.7
101 TraesCS4B01G214000 chrUn 100.000 50 0 0 6450 6499 143995281 143995330 7.680000e-15 93.5
102 TraesCS4B01G214000 chrUn 100.000 49 0 0 6451 6499 40943182 40943134 2.760000e-14 91.6
103 TraesCS4B01G214000 chrUn 100.000 49 0 0 6451 6499 260324686 260324734 2.760000e-14 91.6
104 TraesCS4B01G214000 chrUn 100.000 49 0 0 6451 6499 267451452 267451404 2.760000e-14 91.6
105 TraesCS4B01G214000 chrUn 100.000 49 0 0 6451 6499 301836970 301836922 2.760000e-14 91.6
106 TraesCS4B01G214000 chrUn 100.000 49 0 0 6451 6499 323910795 323910747 2.760000e-14 91.6
107 TraesCS4B01G214000 chrUn 100.000 49 0 0 6451 6499 323913970 323913922 2.760000e-14 91.6
108 TraesCS4B01G214000 chrUn 100.000 49 0 0 6451 6499 340254820 340254772 2.760000e-14 91.6
109 TraesCS4B01G214000 chrUn 100.000 49 0 0 6451 6499 355880543 355880495 2.760000e-14 91.6
110 TraesCS4B01G214000 chrUn 96.364 55 1 1 6451 6504 480648038 480647984 9.930000e-14 89.8
111 TraesCS4B01G214000 chrUn 81.905 105 12 7 3422 3524 65440956 65440857 1.660000e-11 82.4
112 TraesCS4B01G214000 chrUn 92.105 38 3 0 3473 3510 105368205 105368168 4.000000e-03 54.7
113 TraesCS4B01G214000 chr6D 98.113 53 1 0 6451 6503 350272349 350272297 7.680000e-15 93.5
114 TraesCS4B01G214000 chr6D 100.000 50 0 0 6451 6500 419759842 419759793 7.680000e-15 93.5
115 TraesCS4B01G214000 chr6D 96.429 56 1 1 6452 6507 455247171 455247117 2.760000e-14 91.6
116 TraesCS4B01G214000 chr6D 97.959 49 1 0 6451 6499 424705715 424705763 1.280000e-12 86.1
117 TraesCS4B01G214000 chr6D 91.228 57 3 2 3475 3531 426495811 426495757 7.730000e-10 76.8
118 TraesCS4B01G214000 chr6D 92.308 52 4 0 3473 3524 11363732 11363681 2.780000e-09 75.0
119 TraesCS4B01G214000 chr6D 92.308 52 1 1 3473 3524 319255357 319255309 3.600000e-08 71.3
120 TraesCS4B01G214000 chr5A 93.651 63 3 1 6451 6513 540061741 540061680 7.680000e-15 93.5
121 TraesCS4B01G214000 chr5A 83.019 106 9 5 3422 3525 533944187 533944285 3.570000e-13 87.9
122 TraesCS4B01G214000 chr5A 82.692 104 9 7 3422 3523 533944283 533944187 4.620000e-12 84.2
123 TraesCS4B01G214000 chr1D 100.000 50 0 0 6451 6500 48024671 48024622 7.680000e-15 93.5
124 TraesCS4B01G214000 chr1D 98.077 52 1 0 6451 6502 321264201 321264150 2.760000e-14 91.6
125 TraesCS4B01G214000 chr1D 98.113 53 0 1 6451 6502 349422983 349423035 2.760000e-14 91.6
126 TraesCS4B01G214000 chr1D 94.118 51 2 1 3473 3523 49932252 49932203 7.730000e-10 76.8
127 TraesCS4B01G214000 chr1D 81.553 103 9 4 3422 3523 158098923 158099016 7.730000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G214000 chr4B 453246898 453254085 7187 True 13274.000000 13274 100.000000 1 7188 1 chr4B.!!$R2 7187
1 TraesCS4B01G214000 chr4D 368006414 368012181 5767 True 1383.000000 4433 91.193800 44 7188 5 chr4D.!!$R6 7144
2 TraesCS4B01G214000 chr4A 97252583 97260777 8194 False 1089.883333 3561 91.767333 146 7188 6 chr4A.!!$F2 7042
3 TraesCS4B01G214000 chr6B 502312716 502314516 1800 False 2700.000000 2700 93.899000 3540 5322 1 chr6B.!!$F5 1782
4 TraesCS4B01G214000 chr6B 349228030 349229474 1444 False 1844.000000 1844 89.684000 3845 5296 1 chr6B.!!$F4 1451
5 TraesCS4B01G214000 chr6B 19037762 19038877 1115 False 1722.000000 1722 94.534000 3537 4650 1 chr6B.!!$F1 1113
6 TraesCS4B01G214000 chr6B 346317647 346318343 696 False 1027.000000 1027 93.266000 4639 5336 1 chr6B.!!$F3 697
7 TraesCS4B01G214000 chr1B 605464797 605466599 1802 True 2641.000000 2641 93.289000 3540 5322 1 chr1B.!!$R4 1782
8 TraesCS4B01G214000 chr1B 279910765 279911881 1116 True 1716.000000 1716 94.449000 3543 4656 1 chr1B.!!$R1 1113
9 TraesCS4B01G214000 chr1B 321880001 321881179 1178 True 1607.000000 1607 91.702000 4174 5322 1 chr1B.!!$R3 1148
10 TraesCS4B01G214000 chr1B 672183123 672183797 674 True 1014.000000 1014 93.787000 4648 5322 1 chr1B.!!$R5 674
11 TraesCS4B01G214000 chr7B 45059492 45061269 1777 False 2586.000000 2586 92.921000 3543 5320 1 chr7B.!!$F1 1777
12 TraesCS4B01G214000 chr7B 374315341 374317105 1764 False 2503.000000 2503 92.204000 3543 5322 1 chr7B.!!$F3 1779
13 TraesCS4B01G214000 chr7B 188935667 188936822 1155 False 1714.000000 1714 93.512000 3543 4692 1 chr7B.!!$F2 1149
14 TraesCS4B01G214000 chr2B 441877766 441879551 1785 False 2579.000000 2579 92.837000 3543 5322 1 chr2B.!!$F3 1779
15 TraesCS4B01G214000 chr2B 464439324 464440015 691 False 1005.000000 1005 92.919000 4632 5322 1 chr2B.!!$F4 690
16 TraesCS4B01G214000 chr3B 574700755 574701861 1106 False 1788.000000 1788 95.845000 3540 4644 1 chr3B.!!$F6 1104
17 TraesCS4B01G214000 chr3B 723631711 723632647 936 False 1286.000000 1286 91.471000 4256 5191 1 chr3B.!!$F8 935
18 TraesCS4B01G214000 chr5B 124768890 124770015 1125 True 1578.000000 1578 92.028000 4174 5296 1 chr5B.!!$R2 1122
19 TraesCS4B01G214000 chr5B 94094076 94094759 683 True 1026.000000 1026 93.713000 4639 5322 1 chr5B.!!$R1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 611 0.033601 AAAACCACACACCTCAGCCA 60.034 50.000 0.00 0.0 0.00 4.75 F
1163 1253 0.100325 TTCCAAGTGTTTGCGCACAG 59.900 50.000 11.12 0.0 41.52 3.66 F
1481 1593 0.373716 CGGAATTGACGCCTGCTTAC 59.626 55.000 0.00 0.0 0.00 2.34 F
2178 2291 0.324943 TTTCCTCTGCTAGGTGCCAC 59.675 55.000 5.70 0.0 46.62 5.01 F
3443 6436 0.538118 TCCCTCCGTCCCAAATAACG 59.462 55.000 0.00 0.0 38.58 3.18 F
4024 7025 0.848735 CTGGATCCCATGGACACCAT 59.151 55.000 15.22 0.0 46.37 3.55 F
5694 8748 1.076549 GGCCATCTGTTTGACCCCA 59.923 57.895 0.00 0.0 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1481 1593 0.388649 CGACCAAGACCTGAACCGAG 60.389 60.0 0.00 0.0 0.00 4.63 R
2033 2146 1.691196 TGAGAAACCACAGGGCAAAG 58.309 50.0 0.00 0.0 37.90 2.77 R
2441 2554 2.866762 GGCAATAGCTACTGAAGGAACG 59.133 50.0 6.33 0.0 41.70 3.95 R
3502 6495 1.681229 ACTCCCTCTGCCCCAAAATA 58.319 50.0 0.00 0.0 0.00 1.40 R
5050 8100 0.103208 ATCAGCTAGCTTCGGTTCGG 59.897 55.0 16.46 0.7 0.00 4.30 R
5830 8886 0.322098 CAAATACGTCCCCACTGGCA 60.322 55.0 0.00 0.0 0.00 4.92 R
6879 10233 0.399454 ACATGCTGCTGAGGAACTGT 59.601 50.0 0.00 0.0 41.55 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.928661 ATACGATGCAGAAACTGTTCAC 57.071 40.909 0.00 0.00 36.09 3.18
23 24 2.560504 ACGATGCAGAAACTGTTCACA 58.439 42.857 0.00 0.00 36.09 3.58
24 25 2.942376 ACGATGCAGAAACTGTTCACAA 59.058 40.909 0.00 0.00 36.09 3.33
25 26 3.242739 ACGATGCAGAAACTGTTCACAAC 60.243 43.478 0.00 0.00 36.09 3.32
26 27 3.002656 CGATGCAGAAACTGTTCACAACT 59.997 43.478 0.00 0.00 36.09 3.16
27 28 4.496341 CGATGCAGAAACTGTTCACAACTT 60.496 41.667 0.00 0.00 36.09 2.66
28 29 4.095410 TGCAGAAACTGTTCACAACTTG 57.905 40.909 0.00 0.00 36.09 3.16
29 30 3.755905 TGCAGAAACTGTTCACAACTTGA 59.244 39.130 0.00 0.00 36.09 3.02
30 31 4.217334 TGCAGAAACTGTTCACAACTTGAA 59.783 37.500 0.00 0.00 35.45 2.69
39 40 3.479505 TCACAACTTGAACCAAACACG 57.520 42.857 0.00 0.00 0.00 4.49
40 41 2.814919 TCACAACTTGAACCAAACACGT 59.185 40.909 0.00 0.00 0.00 4.49
41 42 3.120130 TCACAACTTGAACCAAACACGTC 60.120 43.478 0.00 0.00 0.00 4.34
42 43 2.162809 ACAACTTGAACCAAACACGTCC 59.837 45.455 0.00 0.00 0.00 4.79
43 44 2.413310 ACTTGAACCAAACACGTCCT 57.587 45.000 0.00 0.00 0.00 3.85
44 45 3.547054 ACTTGAACCAAACACGTCCTA 57.453 42.857 0.00 0.00 0.00 2.94
45 46 3.876341 ACTTGAACCAAACACGTCCTAA 58.124 40.909 0.00 0.00 0.00 2.69
46 47 4.263435 ACTTGAACCAAACACGTCCTAAA 58.737 39.130 0.00 0.00 0.00 1.85
227 272 4.803426 GCCCGTCAGCACTCGAGG 62.803 72.222 18.41 6.97 0.00 4.63
228 273 4.135153 CCCGTCAGCACTCGAGGG 62.135 72.222 18.41 15.12 38.01 4.30
229 274 4.135153 CCGTCAGCACTCGAGGGG 62.135 72.222 18.15 9.47 35.28 4.79
230 275 4.135153 CGTCAGCACTCGAGGGGG 62.135 72.222 18.15 6.73 0.00 5.40
252 297 2.936202 ACCTCAATCATTCCCCATTCG 58.064 47.619 0.00 0.00 0.00 3.34
296 343 2.345991 CCTTCGCAGACGGGGAAA 59.654 61.111 6.55 0.00 46.35 3.13
297 344 1.302192 CCTTCGCAGACGGGGAAAA 60.302 57.895 6.55 0.00 46.35 2.29
298 345 1.574702 CCTTCGCAGACGGGGAAAAC 61.575 60.000 6.55 0.00 46.35 2.43
299 346 0.882927 CTTCGCAGACGGGGAAAACA 60.883 55.000 6.55 0.00 46.35 2.83
300 347 0.464013 TTCGCAGACGGGGAAAACAA 60.464 50.000 2.65 0.00 44.46 2.83
301 348 0.464013 TCGCAGACGGGGAAAACAAA 60.464 50.000 0.00 0.00 40.63 2.83
302 349 0.382515 CGCAGACGGGGAAAACAAAA 59.617 50.000 0.00 0.00 34.97 2.44
303 350 1.847818 GCAGACGGGGAAAACAAAAC 58.152 50.000 0.00 0.00 0.00 2.43
304 351 1.537348 GCAGACGGGGAAAACAAAACC 60.537 52.381 0.00 0.00 0.00 3.27
305 352 1.751924 CAGACGGGGAAAACAAAACCA 59.248 47.619 0.00 0.00 0.00 3.67
306 353 2.166664 CAGACGGGGAAAACAAAACCAA 59.833 45.455 0.00 0.00 0.00 3.67
310 357 3.069016 ACGGGGAAAACAAAACCAATCTC 59.931 43.478 0.00 0.00 0.00 2.75
327 374 5.115472 CCAATCTCATTTGTTTCACGTTTCG 59.885 40.000 0.00 0.00 0.00 3.46
332 379 4.093703 TCATTTGTTTCACGTTTCGTCAGT 59.906 37.500 0.00 0.00 38.32 3.41
357 404 1.136828 TGGCTAGTTTGACCACCACT 58.863 50.000 0.00 0.00 0.00 4.00
358 405 1.071699 TGGCTAGTTTGACCACCACTC 59.928 52.381 0.00 0.00 0.00 3.51
359 406 1.610886 GGCTAGTTTGACCACCACTCC 60.611 57.143 0.00 0.00 0.00 3.85
360 407 1.071699 GCTAGTTTGACCACCACTCCA 59.928 52.381 0.00 0.00 0.00 3.86
361 408 2.767505 CTAGTTTGACCACCACTCCAC 58.232 52.381 0.00 0.00 0.00 4.02
362 409 0.182775 AGTTTGACCACCACTCCACC 59.817 55.000 0.00 0.00 0.00 4.61
363 410 0.106918 GTTTGACCACCACTCCACCA 60.107 55.000 0.00 0.00 0.00 4.17
364 411 0.182537 TTTGACCACCACTCCACCAG 59.817 55.000 0.00 0.00 0.00 4.00
365 412 1.705002 TTGACCACCACTCCACCAGG 61.705 60.000 0.00 0.00 0.00 4.45
487 542 2.147150 GCCTCGGCAATTATTCTCTCC 58.853 52.381 2.41 0.00 41.49 3.71
488 543 2.772287 CCTCGGCAATTATTCTCTCCC 58.228 52.381 0.00 0.00 0.00 4.30
489 544 2.551071 CCTCGGCAATTATTCTCTCCCC 60.551 54.545 0.00 0.00 0.00 4.81
490 545 2.370189 CTCGGCAATTATTCTCTCCCCT 59.630 50.000 0.00 0.00 0.00 4.79
491 546 2.368875 TCGGCAATTATTCTCTCCCCTC 59.631 50.000 0.00 0.00 0.00 4.30
492 547 2.551071 CGGCAATTATTCTCTCCCCTCC 60.551 54.545 0.00 0.00 0.00 4.30
493 548 2.224892 GGCAATTATTCTCTCCCCTCCC 60.225 54.545 0.00 0.00 0.00 4.30
494 549 2.713708 GCAATTATTCTCTCCCCTCCCT 59.286 50.000 0.00 0.00 0.00 4.20
495 550 3.244735 GCAATTATTCTCTCCCCTCCCTC 60.245 52.174 0.00 0.00 0.00 4.30
496 551 2.797285 TTATTCTCTCCCCTCCCTCC 57.203 55.000 0.00 0.00 0.00 4.30
497 552 0.868186 TATTCTCTCCCCTCCCTCCC 59.132 60.000 0.00 0.00 0.00 4.30
498 553 1.238896 ATTCTCTCCCCTCCCTCCCA 61.239 60.000 0.00 0.00 0.00 4.37
499 554 1.460839 TTCTCTCCCCTCCCTCCCAA 61.461 60.000 0.00 0.00 0.00 4.12
500 555 1.383803 CTCTCCCCTCCCTCCCAAG 60.384 68.421 0.00 0.00 0.00 3.61
501 556 2.184631 TCTCCCCTCCCTCCCAAGT 61.185 63.158 0.00 0.00 0.00 3.16
502 557 1.690985 CTCCCCTCCCTCCCAAGTC 60.691 68.421 0.00 0.00 0.00 3.01
503 558 3.083997 CCCCTCCCTCCCAAGTCG 61.084 72.222 0.00 0.00 0.00 4.18
504 559 3.787001 CCCTCCCTCCCAAGTCGC 61.787 72.222 0.00 0.00 0.00 5.19
505 560 2.685380 CCTCCCTCCCAAGTCGCT 60.685 66.667 0.00 0.00 0.00 4.93
506 561 2.726351 CCTCCCTCCCAAGTCGCTC 61.726 68.421 0.00 0.00 0.00 5.03
507 562 2.683933 TCCCTCCCAAGTCGCTCC 60.684 66.667 0.00 0.00 0.00 4.70
508 563 3.787001 CCCTCCCAAGTCGCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
509 564 2.685380 CCTCCCAAGTCGCTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
510 565 2.726351 CCTCCCAAGTCGCTCCCTC 61.726 68.421 0.00 0.00 0.00 4.30
511 566 2.683933 TCCCAAGTCGCTCCCTCC 60.684 66.667 0.00 0.00 0.00 4.30
512 567 4.148825 CCCAAGTCGCTCCCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
513 568 4.148825 CCAAGTCGCTCCCTCCGG 62.149 72.222 0.00 0.00 0.00 5.14
514 569 4.821589 CAAGTCGCTCCCTCCGGC 62.822 72.222 0.00 0.00 0.00 6.13
520 575 4.610714 GCTCCCTCCGGCCGATTC 62.611 72.222 30.73 4.15 0.00 2.52
540 595 4.139859 TCCCCGATTACGATTAGCAAAA 57.860 40.909 0.00 0.00 42.66 2.44
553 608 1.392589 AGCAAAACCACACACCTCAG 58.607 50.000 0.00 0.00 0.00 3.35
554 609 0.249031 GCAAAACCACACACCTCAGC 60.249 55.000 0.00 0.00 0.00 4.26
555 610 0.385390 CAAAACCACACACCTCAGCC 59.615 55.000 0.00 0.00 0.00 4.85
556 611 0.033601 AAAACCACACACCTCAGCCA 60.034 50.000 0.00 0.00 0.00 4.75
575 635 3.233231 GCCAAGCCAAGCCACCAA 61.233 61.111 0.00 0.00 0.00 3.67
597 657 2.523168 TCAGTCCACCACGCCTCA 60.523 61.111 0.00 0.00 0.00 3.86
632 692 3.772522 GAACCCGATTCGATTCGATTC 57.227 47.619 26.39 22.98 41.62 2.52
675 741 1.580845 CGTCCGTTGTACGACCTCCT 61.581 60.000 7.69 0.00 46.05 3.69
677 743 0.250858 TCCGTTGTACGACCTCCTCA 60.251 55.000 7.69 0.00 46.05 3.86
680 746 0.889306 GTTGTACGACCTCCTCAGCT 59.111 55.000 1.31 0.00 0.00 4.24
681 747 0.888619 TTGTACGACCTCCTCAGCTG 59.111 55.000 7.63 7.63 0.00 4.24
682 748 0.965866 TGTACGACCTCCTCAGCTGG 60.966 60.000 15.13 4.45 0.00 4.85
683 749 1.379977 TACGACCTCCTCAGCTGGG 60.380 63.158 15.13 11.13 0.00 4.45
684 750 2.856039 TACGACCTCCTCAGCTGGGG 62.856 65.000 28.07 28.07 0.00 4.96
904 976 0.395311 CACGGCTGGGAGGAGTAGTA 60.395 60.000 0.00 0.00 0.00 1.82
937 1012 0.932399 GCCGGCGTTGTATAATTCGT 59.068 50.000 12.58 0.00 0.00 3.85
945 1020 2.674357 GTTGTATAATTCGTGCGGTGGT 59.326 45.455 0.00 0.00 0.00 4.16
1126 1201 2.344203 CCCTTCGCGTCAGTCTCCT 61.344 63.158 5.77 0.00 0.00 3.69
1127 1202 1.137825 CCTTCGCGTCAGTCTCCTC 59.862 63.158 5.77 0.00 0.00 3.71
1129 1204 1.303398 TTCGCGTCAGTCTCCTCCT 60.303 57.895 5.77 0.00 0.00 3.69
1130 1205 1.306642 TTCGCGTCAGTCTCCTCCTC 61.307 60.000 5.77 0.00 0.00 3.71
1143 1233 3.036959 TCCTCCCTCCTCCTCCCC 61.037 72.222 0.00 0.00 0.00 4.81
1144 1234 3.039526 CCTCCCTCCTCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
1145 1235 2.652113 CCTCCCTCCTCCTCCCCTT 61.652 68.421 0.00 0.00 0.00 3.95
1155 1245 1.425448 CTCCTCCCCTTCCAAGTGTTT 59.575 52.381 0.00 0.00 0.00 2.83
1156 1246 1.144913 TCCTCCCCTTCCAAGTGTTTG 59.855 52.381 0.00 0.00 0.00 2.93
1163 1253 0.100325 TTCCAAGTGTTTGCGCACAG 59.900 50.000 11.12 0.00 41.52 3.66
1184 1277 1.291877 GCGCTGGCCGGATTATAGTG 61.292 60.000 18.31 4.23 37.44 2.74
1276 1381 1.542472 TGACGCGTCTTTGATCTACCA 59.458 47.619 36.27 12.56 0.00 3.25
1303 1409 3.153130 TCCCGAGTCAATGCATTTTTCA 58.847 40.909 9.83 0.00 0.00 2.69
1396 1502 0.468226 TGGGCGATGAGGTATCCAAC 59.532 55.000 0.00 0.00 31.82 3.77
1409 1515 4.606210 GGTATCCAACCCTTGTTACCAAT 58.394 43.478 0.00 0.00 43.16 3.16
1481 1593 0.373716 CGGAATTGACGCCTGCTTAC 59.626 55.000 0.00 0.00 0.00 2.34
1589 1701 3.610040 TCCAGCACAAACTATCGTCAT 57.390 42.857 0.00 0.00 0.00 3.06
1599 1711 5.657302 ACAAACTATCGTCATCCTCTACCTT 59.343 40.000 0.00 0.00 0.00 3.50
1608 1720 3.821600 TCATCCTCTACCTTAGCGATCAC 59.178 47.826 0.00 0.00 0.00 3.06
1674 1786 3.813529 AGCACAGAACGCAGAAAATAC 57.186 42.857 0.00 0.00 0.00 1.89
1701 1813 3.425162 ACATTTTCAGAGGAGTGTCCC 57.575 47.619 0.00 0.00 37.19 4.46
1754 1866 8.773645 CATTTGCTAGATATATTGTGAAACGGA 58.226 33.333 0.00 0.00 42.39 4.69
1815 1928 7.444183 ACTTTCTAAATTTGGAATGTCGTCAGA 59.556 33.333 22.23 5.16 33.04 3.27
1839 1952 7.976175 AGAATTCAGTTTGTGGAAAACTTCTTC 59.024 33.333 8.44 5.27 38.32 2.87
1842 1955 6.563422 TCAGTTTGTGGAAAACTTCTTCATG 58.437 36.000 0.82 0.00 38.32 3.07
1860 1973 4.570930 TCATGTTGCATGTACTTCGGTTA 58.429 39.130 8.68 0.00 0.00 2.85
1866 1979 4.751060 TGCATGTACTTCGGTTACCTAAG 58.249 43.478 13.22 13.22 33.29 2.18
1868 1981 4.751060 CATGTACTTCGGTTACCTAAGCA 58.249 43.478 14.50 6.94 30.62 3.91
1924 2037 0.396435 TGTTCCACTCTCGTTGGCAT 59.604 50.000 0.00 0.00 0.00 4.40
2033 2146 5.796424 AACTCAATATTCATCCATTGCCC 57.204 39.130 0.00 0.00 33.14 5.36
2122 2235 5.909621 AGATGATTTCAGTTCCAATGGTG 57.090 39.130 0.00 0.00 0.00 4.17
2164 2277 2.158813 TCCAGCGTGAGTTTCTTTTCCT 60.159 45.455 0.00 0.00 0.00 3.36
2175 2288 2.770164 TCTTTTCCTCTGCTAGGTGC 57.230 50.000 5.70 0.00 46.62 5.01
2178 2291 0.324943 TTTCCTCTGCTAGGTGCCAC 59.675 55.000 5.70 0.00 46.62 5.01
2201 2314 4.714632 CTGGTTCAGGGTTGTTAAGAGAA 58.285 43.478 0.00 0.00 0.00 2.87
2203 2316 5.701224 TGGTTCAGGGTTGTTAAGAGAATT 58.299 37.500 0.00 0.00 0.00 2.17
2208 2321 3.826729 AGGGTTGTTAAGAGAATTGCACC 59.173 43.478 0.00 0.00 0.00 5.01
2441 2554 3.699038 ACAGGTCTGCAGATCTTACTCTC 59.301 47.826 27.13 6.70 32.11 3.20
2694 2807 5.358922 TGCTTCAAATTCAACAAGGAAAGG 58.641 37.500 0.00 0.00 0.00 3.11
2711 2824 4.401202 GGAAAGGGTTGAAGAAGACAACAA 59.599 41.667 0.00 0.00 46.16 2.83
2819 2933 6.866248 GGCGTGAAAAGAATTTGGATTTTCTA 59.134 34.615 14.64 5.07 41.38 2.10
2846 2960 3.694566 GGTTAGCTTTTCCCATACACAGG 59.305 47.826 0.00 0.00 0.00 4.00
2854 2968 5.477607 TTTCCCATACACAGGATATACCG 57.522 43.478 0.00 0.00 44.74 4.02
3136 6128 8.106247 TGTTAGCATTACTTAAACCTTTCCTG 57.894 34.615 0.00 0.00 0.00 3.86
3443 6436 0.538118 TCCCTCCGTCCCAAATAACG 59.462 55.000 0.00 0.00 38.58 3.18
3446 6439 2.420967 CCCTCCGTCCCAAATAACGATT 60.421 50.000 0.00 0.00 41.29 3.34
3502 6495 5.989777 ACTTTGTACTAAATCAGCGACACTT 59.010 36.000 0.00 0.00 0.00 3.16
3513 6512 0.885196 GCGACACTTATTTTGGGGCA 59.115 50.000 0.00 0.00 0.00 5.36
3537 6536 7.619050 CAGAGGGAGTATATGCTAATTCACAT 58.381 38.462 0.00 0.00 0.00 3.21
3701 6701 2.683211 ATTTGACTCCCAAGCAAGGT 57.317 45.000 0.00 0.00 35.94 3.50
3748 6748 8.813951 CGACCCTTATCTCTAATTAACCCTAAT 58.186 37.037 0.00 0.00 0.00 1.73
3935 6936 2.649312 TCAACCTGAAATGGACTGGGAT 59.351 45.455 0.00 0.00 0.00 3.85
4024 7025 0.848735 CTGGATCCCATGGACACCAT 59.151 55.000 15.22 0.00 46.37 3.55
4233 7234 1.202417 GCGATGGAGAATGACGAGGAA 60.202 52.381 0.00 0.00 0.00 3.36
4305 7308 2.650196 GAAAACAGCATGCCCGCA 59.350 55.556 15.66 0.00 42.53 5.69
4394 7398 1.719063 AAGGGCAACTTGGAGGAGCA 61.719 55.000 0.00 0.00 38.21 4.26
4504 7510 2.883574 CGGGTAGCGATACAAGACAAA 58.116 47.619 13.56 0.00 0.00 2.83
4552 7558 2.731571 GCTGGATGTGGACGCCCTA 61.732 63.158 0.00 0.00 0.00 3.53
4875 7924 2.444895 GGCGGATCTCCTGGACCT 60.445 66.667 0.00 0.00 0.00 3.85
4919 7968 1.390926 GGACACCTCCTCCCAGGTA 59.609 63.158 0.00 0.00 45.81 3.08
4933 7982 2.608678 GGTAAGGACGGTGGGGGT 60.609 66.667 0.00 0.00 0.00 4.95
4961 8010 3.857764 GAGGATCCCGACGATGGT 58.142 61.111 8.55 0.00 0.00 3.55
4968 8017 1.828660 CCCGACGATGGTAGGAGCT 60.829 63.158 8.60 0.00 41.05 4.09
5027 8077 2.636412 CGGCAGTGGAAGAGACGGA 61.636 63.158 0.00 0.00 0.00 4.69
5050 8100 2.740714 GCGGCGGTGAAGACATGAC 61.741 63.158 9.78 0.00 0.00 3.06
5099 8149 1.342074 TATGGCGCTGCTAGAAGGAT 58.658 50.000 7.64 0.00 0.00 3.24
5238 8288 3.733709 CTTGACTCCCAAGCAAGGT 57.266 52.632 0.00 0.00 44.90 3.50
5328 8378 3.680642 TGACGTACTCTAACGCATACC 57.319 47.619 0.00 0.00 46.71 2.73
5329 8379 3.009026 TGACGTACTCTAACGCATACCA 58.991 45.455 0.00 0.00 46.71 3.25
5330 8380 3.628942 TGACGTACTCTAACGCATACCAT 59.371 43.478 0.00 0.00 46.71 3.55
5331 8381 4.815846 TGACGTACTCTAACGCATACCATA 59.184 41.667 0.00 0.00 46.71 2.74
5332 8382 5.471116 TGACGTACTCTAACGCATACCATAT 59.529 40.000 0.00 0.00 46.71 1.78
5333 8383 6.650390 TGACGTACTCTAACGCATACCATATA 59.350 38.462 0.00 0.00 46.71 0.86
5334 8384 7.335171 TGACGTACTCTAACGCATACCATATAT 59.665 37.037 0.00 0.00 46.71 0.86
5335 8385 8.722480 ACGTACTCTAACGCATACCATATATA 57.278 34.615 0.00 0.00 46.71 0.86
5336 8386 9.334947 ACGTACTCTAACGCATACCATATATAT 57.665 33.333 0.00 0.00 46.71 0.86
5337 8387 9.595357 CGTACTCTAACGCATACCATATATATG 57.405 37.037 14.78 14.78 35.87 1.78
5366 8416 3.567478 AAAGTCTCAAGTGGTCAAGCT 57.433 42.857 0.00 0.00 0.00 3.74
5377 8427 4.826556 AGTGGTCAAGCTTATCTTCACTC 58.173 43.478 0.00 0.00 34.29 3.51
5405 8458 2.746362 GAGTTGTGAGAAGATGGCCTTG 59.254 50.000 3.32 0.00 34.68 3.61
5547 8601 5.810080 ACTTCTGGACTAAGCAAGTAAGT 57.190 39.130 0.00 0.00 39.07 2.24
5563 8617 6.404734 GCAAGTAAGTTAATGCAGCCAGTAAT 60.405 38.462 14.09 0.00 38.63 1.89
5694 8748 1.076549 GGCCATCTGTTTGACCCCA 59.923 57.895 0.00 0.00 0.00 4.96
5733 8787 5.670792 ATTCTGGAGACGTTTACACCATA 57.329 39.130 0.00 0.00 0.00 2.74
5830 8886 2.725008 GAGCTCTCGCAGGCGTAT 59.275 61.111 13.83 0.00 40.74 3.06
5872 8928 0.884514 TGCCTTCAGAGTCTGAGACG 59.115 55.000 21.64 14.10 41.75 4.18
6014 9070 2.415608 GGGGATCTCGACGAGTGCA 61.416 63.158 23.41 5.98 0.00 4.57
6037 9093 1.480137 AGGAAGATCGAACAGCTCCTG 59.520 52.381 9.31 0.00 37.52 3.86
6079 9135 3.706373 GTCGGAAGGGCTGCCAGA 61.706 66.667 22.05 8.36 0.00 3.86
6210 9266 3.833304 GCTTATCCAGCCAGGCAC 58.167 61.111 15.80 0.00 43.65 5.01
6240 9296 3.385111 GCTGCCCTGTCTACTGTTATACT 59.615 47.826 0.00 0.00 0.00 2.12
6241 9297 4.583489 GCTGCCCTGTCTACTGTTATACTA 59.417 45.833 0.00 0.00 0.00 1.82
6242 9298 5.507650 GCTGCCCTGTCTACTGTTATACTAC 60.508 48.000 0.00 0.00 0.00 2.73
6247 9303 6.379133 CCCTGTCTACTGTTATACTACAACCA 59.621 42.308 0.00 0.00 0.00 3.67
6304 9360 2.688526 CTTGTGTGGCTTGCTGCACC 62.689 60.000 0.00 1.36 45.15 5.01
6354 9410 1.993369 GCCGCTTGTATGCAGTTCCC 61.993 60.000 0.00 0.00 0.00 3.97
6428 9485 9.747293 GTCTGTTTCTACTAATTATGTACTCCC 57.253 37.037 0.00 0.00 0.00 4.30
6430 9487 9.968870 CTGTTTCTACTAATTATGTACTCCCTC 57.031 37.037 0.00 0.00 0.00 4.30
6431 9488 8.921205 TGTTTCTACTAATTATGTACTCCCTCC 58.079 37.037 0.00 0.00 0.00 4.30
6432 9489 7.756395 TTCTACTAATTATGTACTCCCTCCG 57.244 40.000 0.00 0.00 0.00 4.63
6433 9490 7.083062 TCTACTAATTATGTACTCCCTCCGA 57.917 40.000 0.00 0.00 0.00 4.55
6435 9492 8.168725 TCTACTAATTATGTACTCCCTCCGATT 58.831 37.037 0.00 0.00 0.00 3.34
6436 9493 7.229581 ACTAATTATGTACTCCCTCCGATTC 57.770 40.000 0.00 0.00 0.00 2.52
6437 9494 4.785511 ATTATGTACTCCCTCCGATTCG 57.214 45.455 0.00 0.00 0.00 3.34
6457 9514 9.627395 CGATTCGGAATTACTTGTATTCTAGAT 57.373 33.333 4.47 0.00 33.51 1.98
6472 9529 8.523658 TGTATTCTAGATACATCCATTTCCGAG 58.476 37.037 0.00 0.00 30.34 4.63
6473 9530 7.782897 ATTCTAGATACATCCATTTCCGAGA 57.217 36.000 0.00 0.00 0.00 4.04
6478 9535 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
6479 9536 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
6480 9537 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
6481 9538 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
6482 9539 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
6483 9540 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
6485 9542 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
6488 9545 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
6489 9546 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
6490 9547 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
6491 9548 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
6492 9549 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
6493 9550 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
6494 9551 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6496 9553 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6497 9554 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
6509 9627 3.450096 ACGGAGGGAGTAATAAGGTTGAC 59.550 47.826 0.00 0.00 0.00 3.18
6528 9875 3.618690 ACGCAAGGCTTCTCTAATCTT 57.381 42.857 0.00 0.00 46.39 2.40
6552 9899 4.984161 CCAATGCATTAACCCATTCGATTC 59.016 41.667 12.53 0.00 29.71 2.52
6553 9900 5.221303 CCAATGCATTAACCCATTCGATTCT 60.221 40.000 12.53 0.00 29.71 2.40
6562 9909 8.624367 TTAACCCATTCGATTCTTCAAGTTAA 57.376 30.769 0.00 0.00 0.00 2.01
6575 9922 9.678941 ATTCTTCAAGTTAAAGATTTCGAAACC 57.321 29.630 13.81 2.58 33.01 3.27
6578 9925 7.562454 TCAAGTTAAAGATTTCGAAACCACT 57.438 32.000 13.81 10.15 0.00 4.00
6585 9932 1.770294 TTTCGAAACCACTGGCCTTT 58.230 45.000 6.47 0.00 0.00 3.11
6597 9944 1.630878 CTGGCCTTTCTTCCAGGTACT 59.369 52.381 3.32 0.00 44.64 2.73
6600 9947 3.653836 TGGCCTTTCTTCCAGGTACTAAA 59.346 43.478 3.32 0.00 36.02 1.85
6608 9955 7.554959 TTCTTCCAGGTACTAAACAGAAGAT 57.445 36.000 0.00 0.00 38.75 2.40
6609 9956 8.660295 TTCTTCCAGGTACTAAACAGAAGATA 57.340 34.615 0.00 0.00 38.75 1.98
6610 9957 8.660295 TCTTCCAGGTACTAAACAGAAGATAA 57.340 34.615 0.00 0.00 36.31 1.75
6614 9961 6.758886 CCAGGTACTAAACAGAAGATAAGCTG 59.241 42.308 0.00 0.00 36.02 4.24
6639 9986 0.370273 CTTAAACAGCAGCGCTACCG 59.630 55.000 10.99 0.00 36.40 4.02
6662 10009 6.255020 CCGCTGTCGATAATTTTAACAGTACT 59.745 38.462 10.51 0.00 39.56 2.73
6665 10012 7.903431 GCTGTCGATAATTTTAACAGTACTTGG 59.097 37.037 0.00 0.00 39.56 3.61
6672 10019 5.916661 TTTTAACAGTACTTGGCCAACAA 57.083 34.783 16.05 1.89 37.55 2.83
6683 10030 1.895798 TGGCCAACAAGAAACACACAA 59.104 42.857 0.61 0.00 0.00 3.33
6684 10031 2.094286 TGGCCAACAAGAAACACACAAG 60.094 45.455 0.61 0.00 0.00 3.16
6685 10032 2.539476 GCCAACAAGAAACACACAAGG 58.461 47.619 0.00 0.00 0.00 3.61
6686 10033 2.165437 GCCAACAAGAAACACACAAGGA 59.835 45.455 0.00 0.00 0.00 3.36
6689 10036 5.418676 CCAACAAGAAACACACAAGGAAAT 58.581 37.500 0.00 0.00 0.00 2.17
6709 10062 9.088987 AGGAAATATAAAACTCACACCAAATGT 57.911 29.630 0.00 0.00 44.81 2.71
6737 10090 4.326278 AGATGTAATGTACACGTCAAAGCG 59.674 41.667 0.00 0.00 42.23 4.68
6762 10116 4.278170 TGCTCACAAAATAGTTTCCACAGG 59.722 41.667 0.00 0.00 0.00 4.00
6780 10134 4.943705 CACAGGGCATATACACTTCAGTTT 59.056 41.667 0.00 0.00 0.00 2.66
6782 10136 4.576463 CAGGGCATATACACTTCAGTTTCC 59.424 45.833 0.00 0.00 0.00 3.13
6783 10137 3.883489 GGGCATATACACTTCAGTTTCCC 59.117 47.826 0.00 0.00 0.00 3.97
6784 10138 4.523083 GGCATATACACTTCAGTTTCCCA 58.477 43.478 0.00 0.00 0.00 4.37
6785 10139 4.576463 GGCATATACACTTCAGTTTCCCAG 59.424 45.833 0.00 0.00 0.00 4.45
6786 10140 5.428253 GCATATACACTTCAGTTTCCCAGA 58.572 41.667 0.00 0.00 0.00 3.86
6787 10141 5.880332 GCATATACACTTCAGTTTCCCAGAA 59.120 40.000 0.00 0.00 0.00 3.02
6814 10168 1.815421 GGCACATACACTGCCGGAG 60.815 63.158 5.05 1.84 44.78 4.63
6848 10202 2.813754 TCCAAAGCTCTGCATACACAAC 59.186 45.455 0.00 0.00 0.00 3.32
6849 10203 2.816087 CCAAAGCTCTGCATACACAACT 59.184 45.455 0.00 0.00 0.00 3.16
6850 10204 3.365666 CCAAAGCTCTGCATACACAACTG 60.366 47.826 0.00 0.00 0.00 3.16
6851 10205 3.407424 AAGCTCTGCATACACAACTGA 57.593 42.857 0.00 0.00 0.00 3.41
6852 10206 2.693069 AGCTCTGCATACACAACTGAC 58.307 47.619 0.00 0.00 0.00 3.51
6853 10207 2.037641 AGCTCTGCATACACAACTGACA 59.962 45.455 0.00 0.00 0.00 3.58
6854 10208 2.414481 GCTCTGCATACACAACTGACAG 59.586 50.000 0.00 0.00 0.00 3.51
6855 10209 3.657634 CTCTGCATACACAACTGACAGT 58.342 45.455 1.07 1.07 0.00 3.55
6856 10210 4.060900 CTCTGCATACACAACTGACAGTT 58.939 43.478 15.23 15.23 39.39 3.16
6857 10211 4.058124 TCTGCATACACAACTGACAGTTC 58.942 43.478 18.02 5.99 36.03 3.01
6859 10213 2.484264 GCATACACAACTGACAGTTCCC 59.516 50.000 18.02 0.00 36.03 3.97
6860 10214 3.807209 GCATACACAACTGACAGTTCCCT 60.807 47.826 18.02 5.75 36.03 4.20
6861 10215 2.622064 ACACAACTGACAGTTCCCTC 57.378 50.000 18.02 0.00 36.03 4.30
6863 10217 2.158900 ACACAACTGACAGTTCCCTCAG 60.159 50.000 18.02 8.51 36.03 3.35
6864 10218 1.417890 ACAACTGACAGTTCCCTCAGG 59.582 52.381 18.02 7.82 36.03 3.86
6868 10222 1.902508 CTGACAGTTCCCTCAGGCTTA 59.097 52.381 0.00 0.00 31.80 3.09
6869 10223 2.303022 CTGACAGTTCCCTCAGGCTTAA 59.697 50.000 0.00 0.00 31.80 1.85
6871 10225 3.137544 TGACAGTTCCCTCAGGCTTAAAA 59.862 43.478 0.00 0.00 0.00 1.52
6872 10226 4.142038 GACAGTTCCCTCAGGCTTAAAAA 58.858 43.478 0.00 0.00 0.00 1.94
6893 10247 6.566197 AAAAATAAGACAGTTCCTCAGCAG 57.434 37.500 0.00 0.00 0.00 4.24
6894 10248 2.751166 TAAGACAGTTCCTCAGCAGC 57.249 50.000 0.00 0.00 0.00 5.25
6896 10250 0.982704 AGACAGTTCCTCAGCAGCAT 59.017 50.000 0.00 0.00 0.00 3.79
6897 10251 1.085091 GACAGTTCCTCAGCAGCATG 58.915 55.000 0.00 0.00 40.87 4.06
6899 10253 0.803117 CAGTTCCTCAGCAGCATGTG 59.197 55.000 0.00 0.00 39.31 3.21
6900 10254 0.689055 AGTTCCTCAGCAGCATGTGA 59.311 50.000 0.00 0.00 39.31 3.58
6903 10257 3.136077 AGTTCCTCAGCAGCATGTGATAT 59.864 43.478 0.00 0.00 39.31 1.63
6904 10258 3.121738 TCCTCAGCAGCATGTGATATG 57.878 47.619 0.00 0.00 39.31 1.78
6905 10259 1.535896 CCTCAGCAGCATGTGATATGC 59.464 52.381 6.00 6.00 44.85 3.14
6906 10260 1.535896 CTCAGCAGCATGTGATATGCC 59.464 52.381 10.64 0.00 45.59 4.40
6907 10261 1.142262 TCAGCAGCATGTGATATGCCT 59.858 47.619 10.64 0.00 45.59 4.75
6908 10262 1.535896 CAGCAGCATGTGATATGCCTC 59.464 52.381 10.64 3.12 45.59 4.70
6909 10263 1.420514 AGCAGCATGTGATATGCCTCT 59.579 47.619 10.64 5.37 45.59 3.69
6910 10264 1.535896 GCAGCATGTGATATGCCTCTG 59.464 52.381 10.64 4.22 45.59 3.35
6911 10265 2.847441 CAGCATGTGATATGCCTCTGT 58.153 47.619 10.64 0.00 45.59 3.41
6912 10266 2.806818 CAGCATGTGATATGCCTCTGTC 59.193 50.000 10.64 0.00 45.59 3.51
6913 10267 1.797046 GCATGTGATATGCCTCTGTCG 59.203 52.381 2.45 0.00 39.01 4.35
6914 10268 2.546584 GCATGTGATATGCCTCTGTCGA 60.547 50.000 2.45 0.00 39.01 4.20
6915 10269 2.871182 TGTGATATGCCTCTGTCGAC 57.129 50.000 9.11 9.11 0.00 4.20
6916 10270 2.099405 TGTGATATGCCTCTGTCGACA 58.901 47.619 18.88 18.88 0.00 4.35
6917 10271 2.495669 TGTGATATGCCTCTGTCGACAA 59.504 45.455 20.49 4.31 0.00 3.18
6918 10272 2.860735 GTGATATGCCTCTGTCGACAAC 59.139 50.000 20.49 9.86 0.00 3.32
6919 10273 2.760650 TGATATGCCTCTGTCGACAACT 59.239 45.455 20.49 3.38 0.00 3.16
6920 10274 3.195610 TGATATGCCTCTGTCGACAACTT 59.804 43.478 20.49 9.80 0.00 2.66
6921 10275 1.800805 ATGCCTCTGTCGACAACTTG 58.199 50.000 20.49 7.98 0.00 3.16
6922 10276 0.464036 TGCCTCTGTCGACAACTTGT 59.536 50.000 20.49 0.00 0.00 3.16
6923 10277 1.134521 TGCCTCTGTCGACAACTTGTT 60.135 47.619 20.49 0.00 0.00 2.83
6924 10278 1.261619 GCCTCTGTCGACAACTTGTTG 59.738 52.381 20.49 11.44 33.03 3.33
6925 10279 1.867233 CCTCTGTCGACAACTTGTTGG 59.133 52.381 20.49 10.44 32.62 3.77
6926 10280 1.261619 CTCTGTCGACAACTTGTTGGC 59.738 52.381 20.49 13.06 36.91 4.52
6927 10281 1.013596 CTGTCGACAACTTGTTGGCA 58.986 50.000 20.49 14.49 43.51 4.92
6928 10282 1.603802 CTGTCGACAACTTGTTGGCAT 59.396 47.619 20.49 0.00 44.52 4.40
6929 10283 2.020720 TGTCGACAACTTGTTGGCATT 58.979 42.857 17.62 0.00 41.11 3.56
6930 10284 2.425312 TGTCGACAACTTGTTGGCATTT 59.575 40.909 17.62 0.00 41.11 2.32
6931 10285 2.788786 GTCGACAACTTGTTGGCATTTG 59.211 45.455 18.02 3.40 36.41 2.32
6932 10286 2.685388 TCGACAACTTGTTGGCATTTGA 59.315 40.909 18.02 5.55 32.62 2.69
6933 10287 2.788786 CGACAACTTGTTGGCATTTGAC 59.211 45.455 18.02 0.00 0.00 3.18
6934 10288 3.733380 CGACAACTTGTTGGCATTTGACA 60.733 43.478 18.02 0.00 0.00 3.58
6935 10289 4.370917 GACAACTTGTTGGCATTTGACAT 58.629 39.130 13.84 0.00 30.06 3.06
6936 10290 5.527951 GACAACTTGTTGGCATTTGACATA 58.472 37.500 13.84 0.00 30.06 2.29
6937 10291 5.288804 ACAACTTGTTGGCATTTGACATAC 58.711 37.500 16.48 0.00 30.06 2.39
6938 10292 5.163468 ACAACTTGTTGGCATTTGACATACA 60.163 36.000 16.48 0.00 30.06 2.29
6939 10293 4.870363 ACTTGTTGGCATTTGACATACAC 58.130 39.130 0.00 0.00 30.06 2.90
6940 10294 4.340666 ACTTGTTGGCATTTGACATACACA 59.659 37.500 0.00 0.00 30.06 3.72
6941 10295 4.926140 TGTTGGCATTTGACATACACAA 57.074 36.364 0.00 0.00 30.06 3.33
6942 10296 5.268118 TGTTGGCATTTGACATACACAAA 57.732 34.783 0.00 0.00 40.62 2.83
6943 10297 5.664457 TGTTGGCATTTGACATACACAAAA 58.336 33.333 0.00 0.00 39.95 2.44
6944 10298 6.286758 TGTTGGCATTTGACATACACAAAAT 58.713 32.000 0.00 0.00 39.95 1.82
6945 10299 6.423302 TGTTGGCATTTGACATACACAAAATC 59.577 34.615 0.00 0.00 39.95 2.17
6946 10300 6.094193 TGGCATTTGACATACACAAAATCA 57.906 33.333 0.00 0.00 39.95 2.57
6947 10301 6.157904 TGGCATTTGACATACACAAAATCAG 58.842 36.000 0.00 0.00 39.95 2.90
6948 10302 6.158598 GGCATTTGACATACACAAAATCAGT 58.841 36.000 0.00 0.00 39.95 3.41
6949 10303 6.646240 GGCATTTGACATACACAAAATCAGTT 59.354 34.615 0.00 0.00 39.95 3.16
6950 10304 7.812191 GGCATTTGACATACACAAAATCAGTTA 59.188 33.333 0.00 0.00 39.95 2.24
6951 10305 9.190858 GCATTTGACATACACAAAATCAGTTAA 57.809 29.630 0.00 0.00 39.95 2.01
6961 10315 8.587952 ACACAAAATCAGTTAAATACAAAGGC 57.412 30.769 0.00 0.00 0.00 4.35
6962 10316 7.655732 ACACAAAATCAGTTAAATACAAAGGCC 59.344 33.333 0.00 0.00 0.00 5.19
6963 10317 7.655328 CACAAAATCAGTTAAATACAAAGGCCA 59.345 33.333 5.01 0.00 0.00 5.36
6964 10318 8.207545 ACAAAATCAGTTAAATACAAAGGCCAA 58.792 29.630 5.01 0.00 0.00 4.52
6965 10319 9.218440 CAAAATCAGTTAAATACAAAGGCCAAT 57.782 29.630 5.01 0.00 0.00 3.16
6966 10320 8.776376 AAATCAGTTAAATACAAAGGCCAATG 57.224 30.769 5.01 5.77 0.00 2.82
6967 10321 7.716799 ATCAGTTAAATACAAAGGCCAATGA 57.283 32.000 14.09 0.09 0.00 2.57
6968 10322 6.919721 TCAGTTAAATACAAAGGCCAATGAC 58.080 36.000 14.09 1.69 0.00 3.06
6969 10323 6.719370 TCAGTTAAATACAAAGGCCAATGACT 59.281 34.615 14.09 3.80 0.00 3.41
6970 10324 6.808212 CAGTTAAATACAAAGGCCAATGACTG 59.192 38.462 14.09 11.26 0.00 3.51
6971 10325 6.493458 AGTTAAATACAAAGGCCAATGACTGT 59.507 34.615 14.09 5.84 0.00 3.55
6989 10343 5.698089 TGACTGTCATGATTCTCACAAAGAC 59.302 40.000 6.36 0.00 32.27 3.01
6993 10348 6.290605 TGTCATGATTCTCACAAAGACTGAA 58.709 36.000 0.00 0.00 32.27 3.02
7069 10424 2.452600 ATGGGCAACGGGTAAATCAT 57.547 45.000 0.00 0.00 37.60 2.45
7070 10425 1.468985 TGGGCAACGGGTAAATCATG 58.531 50.000 0.00 0.00 37.60 3.07
7083 10438 3.967467 AAATCATGGAGGAGAAGCCAT 57.033 42.857 0.00 0.00 45.47 4.40
7085 10440 5.393068 AAATCATGGAGGAGAAGCCATTA 57.607 39.130 0.00 0.00 42.03 1.90
7174 10533 0.976641 TGAGAACGCTGTCCAGGAAT 59.023 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.560504 TGTGAACAGTTTCTGCATCGT 58.439 42.857 0.00 0.00 34.37 3.73
4 5 3.002656 AGTTGTGAACAGTTTCTGCATCG 59.997 43.478 0.00 0.00 34.37 3.84
5 6 4.558538 AGTTGTGAACAGTTTCTGCATC 57.441 40.909 0.00 0.00 34.37 3.91
6 7 4.398988 TCAAGTTGTGAACAGTTTCTGCAT 59.601 37.500 2.11 0.00 34.37 3.96
7 8 3.755905 TCAAGTTGTGAACAGTTTCTGCA 59.244 39.130 2.11 0.00 34.37 4.41
8 9 4.355543 TCAAGTTGTGAACAGTTTCTGC 57.644 40.909 2.11 0.00 34.37 4.26
18 19 3.253677 ACGTGTTTGGTTCAAGTTGTGAA 59.746 39.130 2.11 0.00 44.20 3.18
19 20 2.814919 ACGTGTTTGGTTCAAGTTGTGA 59.185 40.909 2.11 0.00 0.00 3.58
20 21 3.168193 GACGTGTTTGGTTCAAGTTGTG 58.832 45.455 2.11 0.00 0.00 3.33
21 22 2.162809 GGACGTGTTTGGTTCAAGTTGT 59.837 45.455 2.11 0.00 0.00 3.32
22 23 2.422127 AGGACGTGTTTGGTTCAAGTTG 59.578 45.455 0.00 0.00 0.00 3.16
23 24 2.718563 AGGACGTGTTTGGTTCAAGTT 58.281 42.857 0.00 0.00 0.00 2.66
24 25 2.413310 AGGACGTGTTTGGTTCAAGT 57.587 45.000 0.00 0.00 0.00 3.16
25 26 4.095185 TGTTTAGGACGTGTTTGGTTCAAG 59.905 41.667 0.00 0.00 0.00 3.02
26 27 4.008330 TGTTTAGGACGTGTTTGGTTCAA 58.992 39.130 0.00 0.00 0.00 2.69
27 28 3.374678 GTGTTTAGGACGTGTTTGGTTCA 59.625 43.478 0.00 0.00 0.00 3.18
28 29 3.242837 GGTGTTTAGGACGTGTTTGGTTC 60.243 47.826 0.00 0.00 0.00 3.62
29 30 2.684374 GGTGTTTAGGACGTGTTTGGTT 59.316 45.455 0.00 0.00 0.00 3.67
30 31 2.092807 AGGTGTTTAGGACGTGTTTGGT 60.093 45.455 0.00 0.00 0.00 3.67
31 32 2.546789 GAGGTGTTTAGGACGTGTTTGG 59.453 50.000 0.00 0.00 0.00 3.28
32 33 3.463944 AGAGGTGTTTAGGACGTGTTTG 58.536 45.455 0.00 0.00 0.00 2.93
33 34 3.832615 AGAGGTGTTTAGGACGTGTTT 57.167 42.857 0.00 0.00 0.00 2.83
34 35 3.257624 CCTAGAGGTGTTTAGGACGTGTT 59.742 47.826 0.00 0.00 39.02 3.32
35 36 2.824341 CCTAGAGGTGTTTAGGACGTGT 59.176 50.000 0.00 0.00 39.02 4.49
36 37 2.416972 GCCTAGAGGTGTTTAGGACGTG 60.417 54.545 0.00 0.00 39.02 4.49
37 38 1.823610 GCCTAGAGGTGTTTAGGACGT 59.176 52.381 0.00 0.00 39.02 4.34
38 39 1.136500 GGCCTAGAGGTGTTTAGGACG 59.864 57.143 0.00 0.00 39.02 4.79
39 40 1.485480 GGGCCTAGAGGTGTTTAGGAC 59.515 57.143 0.84 0.00 43.22 3.85
40 41 1.079825 TGGGCCTAGAGGTGTTTAGGA 59.920 52.381 4.53 0.00 39.02 2.94
41 42 1.580059 TGGGCCTAGAGGTGTTTAGG 58.420 55.000 4.53 0.00 39.56 2.69
42 43 3.041946 AGATGGGCCTAGAGGTGTTTAG 58.958 50.000 4.53 0.00 37.57 1.85
43 44 3.039011 GAGATGGGCCTAGAGGTGTTTA 58.961 50.000 4.53 0.00 37.57 2.01
44 45 1.840635 GAGATGGGCCTAGAGGTGTTT 59.159 52.381 4.53 0.00 37.57 2.83
45 46 1.273838 TGAGATGGGCCTAGAGGTGTT 60.274 52.381 4.53 0.00 37.57 3.32
46 47 0.339859 TGAGATGGGCCTAGAGGTGT 59.660 55.000 4.53 0.00 37.57 4.16
100 101 0.931202 CACGCATGTGCACAAGTGTG 60.931 55.000 38.36 38.36 45.32 3.82
138 183 4.643387 GCCAACGGTCCTGCCTGT 62.643 66.667 0.00 0.00 34.25 4.00
229 274 2.826674 TGGGGAATGATTGAGGTTCC 57.173 50.000 0.00 0.00 40.50 3.62
230 275 3.316308 CGAATGGGGAATGATTGAGGTTC 59.684 47.826 0.00 0.00 0.00 3.62
252 297 2.444895 AGCACGGGAGGGGAGATC 60.445 66.667 0.00 0.00 0.00 2.75
283 330 0.382515 TTTTGTTTTCCCCGTCTGCG 59.617 50.000 0.00 0.00 37.95 5.18
288 335 3.035363 AGATTGGTTTTGTTTTCCCCGT 58.965 40.909 0.00 0.00 0.00 5.28
290 337 4.681074 TGAGATTGGTTTTGTTTTCCCC 57.319 40.909 0.00 0.00 0.00 4.81
292 339 7.552458 ACAAATGAGATTGGTTTTGTTTTCC 57.448 32.000 0.00 0.00 38.72 3.13
297 344 6.255453 CGTGAAACAAATGAGATTGGTTTTGT 59.745 34.615 3.83 0.00 44.27 2.83
298 345 6.255453 ACGTGAAACAAATGAGATTGGTTTTG 59.745 34.615 3.83 0.00 44.27 2.44
299 346 6.337356 ACGTGAAACAAATGAGATTGGTTTT 58.663 32.000 3.83 0.00 44.27 2.43
300 347 5.901552 ACGTGAAACAAATGAGATTGGTTT 58.098 33.333 2.12 2.12 46.27 3.27
301 348 5.514274 ACGTGAAACAAATGAGATTGGTT 57.486 34.783 0.00 0.00 42.69 3.67
302 349 5.514274 AACGTGAAACAAATGAGATTGGT 57.486 34.783 0.00 0.00 35.74 3.67
303 350 5.115472 CGAAACGTGAAACAAATGAGATTGG 59.885 40.000 0.00 0.00 35.74 3.16
304 351 5.681105 ACGAAACGTGAAACAAATGAGATTG 59.319 36.000 0.00 0.00 39.18 2.67
305 352 5.816919 ACGAAACGTGAAACAAATGAGATT 58.183 33.333 0.00 0.00 39.18 2.40
306 353 5.007234 TGACGAAACGTGAAACAAATGAGAT 59.993 36.000 0.62 0.00 41.37 2.75
310 357 4.339429 ACTGACGAAACGTGAAACAAATG 58.661 39.130 0.62 0.00 41.37 2.32
338 385 1.071699 GAGTGGTGGTCAAACTAGCCA 59.928 52.381 0.00 0.00 0.00 4.75
340 387 1.071699 TGGAGTGGTGGTCAAACTAGC 59.928 52.381 0.00 0.00 0.00 3.42
342 389 1.418637 GGTGGAGTGGTGGTCAAACTA 59.581 52.381 0.00 0.00 0.00 2.24
343 390 0.182775 GGTGGAGTGGTGGTCAAACT 59.817 55.000 0.00 0.00 0.00 2.66
357 404 3.324930 CTGCTGCCTCCTGGTGGA 61.325 66.667 18.68 3.29 40.69 4.02
487 542 3.787001 GCGACTTGGGAGGGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
488 543 2.685380 AGCGACTTGGGAGGGAGG 60.685 66.667 0.00 0.00 0.00 4.30
489 544 2.726351 GGAGCGACTTGGGAGGGAG 61.726 68.421 0.00 0.00 0.00 4.30
490 545 2.683933 GGAGCGACTTGGGAGGGA 60.684 66.667 0.00 0.00 0.00 4.20
491 546 3.787001 GGGAGCGACTTGGGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
492 547 2.685380 AGGGAGCGACTTGGGAGG 60.685 66.667 0.00 0.00 0.00 4.30
493 548 2.726351 GGAGGGAGCGACTTGGGAG 61.726 68.421 0.00 0.00 0.00 4.30
494 549 2.683933 GGAGGGAGCGACTTGGGA 60.684 66.667 0.00 0.00 0.00 4.37
495 550 4.148825 CGGAGGGAGCGACTTGGG 62.149 72.222 0.00 0.00 0.00 4.12
510 565 2.874664 TAATCGGGGAATCGGCCGG 61.875 63.158 27.83 7.21 0.00 6.13
511 566 1.666872 GTAATCGGGGAATCGGCCG 60.667 63.158 22.12 22.12 0.00 6.13
512 567 1.666872 CGTAATCGGGGAATCGGCC 60.667 63.158 0.00 0.00 0.00 6.13
513 568 0.037605 ATCGTAATCGGGGAATCGGC 60.038 55.000 0.00 0.00 37.69 5.54
514 569 2.450609 AATCGTAATCGGGGAATCGG 57.549 50.000 0.00 0.00 37.69 4.18
515 570 2.921754 GCTAATCGTAATCGGGGAATCG 59.078 50.000 0.00 0.00 37.69 3.34
516 571 3.921677 TGCTAATCGTAATCGGGGAATC 58.078 45.455 0.00 0.00 37.69 2.52
517 572 4.345859 TTGCTAATCGTAATCGGGGAAT 57.654 40.909 0.00 0.00 37.69 3.01
518 573 3.823281 TTGCTAATCGTAATCGGGGAA 57.177 42.857 0.00 0.00 37.69 3.97
519 574 3.823281 TTTGCTAATCGTAATCGGGGA 57.177 42.857 0.00 0.00 37.69 4.81
520 575 3.002965 GGTTTTGCTAATCGTAATCGGGG 59.997 47.826 0.00 0.00 37.69 5.73
540 595 1.149174 CTTGGCTGAGGTGTGTGGT 59.851 57.895 0.00 0.00 0.00 4.16
553 608 4.383861 GGCTTGGCTTGGCTTGGC 62.384 66.667 0.00 0.00 0.00 4.52
554 609 2.918802 TGGCTTGGCTTGGCTTGG 60.919 61.111 5.64 0.00 0.00 3.61
555 610 2.341176 GTGGCTTGGCTTGGCTTG 59.659 61.111 5.64 0.00 0.00 4.01
556 611 2.919328 GGTGGCTTGGCTTGGCTT 60.919 61.111 5.64 0.00 0.00 4.35
575 635 3.039988 CGTGGTGGACTGACGACT 58.960 61.111 0.00 0.00 35.05 4.18
687 753 4.853142 ATCGGAGCGGGGGTAGCA 62.853 66.667 0.00 0.00 37.01 3.49
688 754 3.516866 GAATCGGAGCGGGGGTAGC 62.517 68.421 0.00 0.00 0.00 3.58
689 755 2.735237 GAATCGGAGCGGGGGTAG 59.265 66.667 0.00 0.00 0.00 3.18
690 756 2.841044 GGAATCGGAGCGGGGGTA 60.841 66.667 0.00 0.00 0.00 3.69
691 757 4.798682 AGGAATCGGAGCGGGGGT 62.799 66.667 0.00 0.00 0.00 4.95
692 758 3.930012 GAGGAATCGGAGCGGGGG 61.930 72.222 0.00 0.00 0.00 5.40
693 759 3.930012 GGAGGAATCGGAGCGGGG 61.930 72.222 0.00 0.00 0.00 5.73
694 760 3.930012 GGGAGGAATCGGAGCGGG 61.930 72.222 0.00 0.00 0.00 6.13
695 761 4.286320 CGGGAGGAATCGGAGCGG 62.286 72.222 0.00 0.00 0.00 5.52
696 762 2.573609 AAACGGGAGGAATCGGAGCG 62.574 60.000 0.00 0.00 0.00 5.03
697 763 0.392595 AAAACGGGAGGAATCGGAGC 60.393 55.000 0.00 0.00 0.00 4.70
698 764 1.207329 AGAAAACGGGAGGAATCGGAG 59.793 52.381 0.00 0.00 0.00 4.63
699 765 1.206371 GAGAAAACGGGAGGAATCGGA 59.794 52.381 0.00 0.00 0.00 4.55
918 990 0.932399 ACGAATTATACAACGCCGGC 59.068 50.000 19.07 19.07 0.00 6.13
925 997 2.673862 CACCACCGCACGAATTATACAA 59.326 45.455 0.00 0.00 0.00 2.41
996 1071 3.883549 GGAGCCTGCCCCATCCTC 61.884 72.222 0.00 0.00 0.00 3.71
1061 1136 4.925861 GCGGCCTGGAGCTCCATC 62.926 72.222 35.11 26.96 46.46 3.51
1126 1201 3.036959 GGGGAGGAGGAGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
1127 1202 2.613576 GAAGGGGAGGAGGAGGGAGG 62.614 70.000 0.00 0.00 0.00 4.30
1129 1204 2.647949 GGAAGGGGAGGAGGAGGGA 61.648 68.421 0.00 0.00 0.00 4.20
1130 1205 2.040359 GGAAGGGGAGGAGGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
1143 1233 0.100325 TGTGCGCAAACACTTGGAAG 59.900 50.000 14.00 0.00 41.30 3.46
1144 1234 0.100325 CTGTGCGCAAACACTTGGAA 59.900 50.000 14.00 0.00 41.30 3.53
1145 1235 1.723608 CCTGTGCGCAAACACTTGGA 61.724 55.000 14.00 0.00 41.30 3.53
1171 1262 3.936372 TCTAGCACACTATAATCCGGC 57.064 47.619 0.00 0.00 0.00 6.13
1173 1264 6.025749 TCCAATCTAGCACACTATAATCCG 57.974 41.667 0.00 0.00 0.00 4.18
1175 1266 8.526978 TCTGATCCAATCTAGCACACTATAATC 58.473 37.037 0.00 0.00 0.00 1.75
1176 1267 8.427902 TCTGATCCAATCTAGCACACTATAAT 57.572 34.615 0.00 0.00 0.00 1.28
1178 1269 7.671398 TGATCTGATCCAATCTAGCACACTATA 59.329 37.037 14.71 0.00 0.00 1.31
1179 1270 6.496218 TGATCTGATCCAATCTAGCACACTAT 59.504 38.462 14.71 0.00 0.00 2.12
1184 1277 5.465532 TCTGATCTGATCCAATCTAGCAC 57.534 43.478 14.71 0.00 0.00 4.40
1276 1381 1.347707 TGCATTGACTCGGGAGTTCTT 59.652 47.619 2.39 0.00 42.66 2.52
1409 1515 1.202521 TCAAGTCAAGCAGCGACAAGA 60.203 47.619 3.59 0.00 35.77 3.02
1481 1593 0.388649 CGACCAAGACCTGAACCGAG 60.389 60.000 0.00 0.00 0.00 4.63
1589 1701 3.478509 GAGTGATCGCTAAGGTAGAGGA 58.521 50.000 9.20 0.00 0.00 3.71
1599 1711 1.064685 TCTGGAGTGGAGTGATCGCTA 60.065 52.381 9.20 0.00 0.00 4.26
1608 1720 3.684788 CGTTTGGTATTTCTGGAGTGGAG 59.315 47.826 0.00 0.00 0.00 3.86
1674 1786 4.093998 CACTCCTCTGAAAATGTTCCATCG 59.906 45.833 0.00 0.00 32.28 3.84
1687 1799 2.291346 TGATTACGGGACACTCCTCTGA 60.291 50.000 0.00 0.00 36.57 3.27
1701 1813 2.009051 TCAGCATGGCAGTTGATTACG 58.991 47.619 0.00 0.00 36.16 3.18
1779 1891 8.617290 TCCAAATTTAGAAAGTTGACTAGGAC 57.383 34.615 14.84 0.00 44.19 3.85
1815 1928 7.610865 TGAAGAAGTTTTCCACAAACTGAATT 58.389 30.769 0.82 0.00 40.10 2.17
1839 1952 3.829886 AACCGAAGTACATGCAACATG 57.170 42.857 6.03 6.03 0.00 3.21
1842 1955 3.332034 AGGTAACCGAAGTACATGCAAC 58.668 45.455 0.00 0.00 37.17 4.17
1860 1973 2.553247 GCTGAAAAGGAGGTGCTTAGGT 60.553 50.000 0.00 0.00 0.00 3.08
1866 1979 1.270826 GGAAAGCTGAAAAGGAGGTGC 59.729 52.381 0.00 0.00 0.00 5.01
1868 1981 3.160269 CATGGAAAGCTGAAAAGGAGGT 58.840 45.455 0.00 0.00 0.00 3.85
2033 2146 1.691196 TGAGAAACCACAGGGCAAAG 58.309 50.000 0.00 0.00 37.90 2.77
2122 2235 6.108687 TGGAAGATGTGTGTGATAAGACATC 58.891 40.000 6.40 6.40 43.33 3.06
2188 2301 5.453567 AAGGTGCAATTCTCTTAACAACC 57.546 39.130 0.00 0.00 0.00 3.77
2201 2314 6.993902 ACAAGAAATCAATTCAAAGGTGCAAT 59.006 30.769 0.00 0.00 40.72 3.56
2203 2316 5.916318 ACAAGAAATCAATTCAAAGGTGCA 58.084 33.333 0.00 0.00 40.72 4.57
2208 2321 6.863126 AGCCGTTACAAGAAATCAATTCAAAG 59.137 34.615 0.00 0.00 40.72 2.77
2441 2554 2.866762 GGCAATAGCTACTGAAGGAACG 59.133 50.000 6.33 0.00 41.70 3.95
2520 2633 8.095169 GGATAGACGAAGGGTTGAAATGTATAT 58.905 37.037 0.00 0.00 0.00 0.86
2694 2807 4.105486 GCTGTTTGTTGTCTTCTTCAACC 58.895 43.478 6.38 0.00 42.82 3.77
2711 2824 8.871686 ACGAAAAGAAAAATCAATAAGCTGTT 57.128 26.923 0.00 0.00 0.00 3.16
2819 2933 5.710567 GTGTATGGGAAAAGCTAACCTCTTT 59.289 40.000 0.00 0.00 35.47 2.52
2871 2985 8.684386 TTACTTCCATGTAGTTCAAATTGTCA 57.316 30.769 3.39 0.00 0.00 3.58
3090 6082 4.275936 ACATGAAGTGTTCACTTTGCTACC 59.724 41.667 17.44 6.33 43.48 3.18
3136 6128 6.387465 TGTAGCAAACACATACTCTACAGAC 58.613 40.000 0.00 0.00 33.63 3.51
3475 6468 5.756347 TGTCGCTGATTTAGTACAAAGTTGT 59.244 36.000 1.75 1.75 44.86 3.32
3478 6471 5.539048 AGTGTCGCTGATTTAGTACAAAGT 58.461 37.500 0.00 0.00 0.00 2.66
3502 6495 1.681229 ACTCCCTCTGCCCCAAAATA 58.319 50.000 0.00 0.00 0.00 1.40
3513 6512 7.805083 ATGTGAATTAGCATATACTCCCTCT 57.195 36.000 0.00 0.00 0.00 3.69
3537 6536 4.082190 CCTTCTAGCAGCGCCATAATAGTA 60.082 45.833 2.29 0.00 0.00 1.82
3683 6683 2.452600 AACCTTGCTTGGGAGTCAAA 57.547 45.000 0.00 0.00 34.56 2.69
3701 6701 3.418047 GCTTGCTTAGGGGTCAAGTAAA 58.582 45.455 0.00 0.00 39.36 2.01
3772 6772 3.127721 GGGGTGTAGTGTTAGAGTACGTC 59.872 52.174 0.00 0.00 33.62 4.34
3935 6936 5.148502 TGTTAAGGGGTCCAAAATAAAGCA 58.851 37.500 0.00 0.00 0.00 3.91
4024 7025 2.158623 ACATGCACTCCTTTTGTCCAGA 60.159 45.455 0.00 0.00 0.00 3.86
4139 7140 2.110213 GCAGGGTGTCACCGACAA 59.890 61.111 15.93 0.00 44.49 3.18
4495 7499 1.433837 GCCGTCACCGTTTGTCTTGT 61.434 55.000 0.00 0.00 0.00 3.16
4564 7570 2.227089 GACCTCGTTCCCATCAGCGT 62.227 60.000 0.00 0.00 0.00 5.07
4957 8006 2.041922 TCGCCCAGCTCCTACCAT 60.042 61.111 0.00 0.00 0.00 3.55
4958 8007 3.075005 GTCGCCCAGCTCCTACCA 61.075 66.667 0.00 0.00 0.00 3.25
4961 8010 4.753662 ACCGTCGCCCAGCTCCTA 62.754 66.667 0.00 0.00 0.00 2.94
5027 8077 3.936203 TCTTCACCGCCGCCAAGT 61.936 61.111 0.00 0.00 0.00 3.16
5050 8100 0.103208 ATCAGCTAGCTTCGGTTCGG 59.897 55.000 16.46 0.70 0.00 4.30
5238 8288 3.418047 GCTTGCTTAGGGGTCAAGTAAA 58.582 45.455 0.00 0.00 39.36 2.01
5344 8394 4.273318 AGCTTGACCACTTGAGACTTTTT 58.727 39.130 0.00 0.00 0.00 1.94
5345 8395 3.891049 AGCTTGACCACTTGAGACTTTT 58.109 40.909 0.00 0.00 0.00 2.27
5346 8396 3.567478 AGCTTGACCACTTGAGACTTT 57.433 42.857 0.00 0.00 0.00 2.66
5377 8427 4.244066 CATCTTCTCACAACTCAGTCAGG 58.756 47.826 0.00 0.00 0.00 3.86
5405 8458 5.220605 GGAATACTAATCCGCAACTTGTGAC 60.221 44.000 3.78 0.00 0.00 3.67
5547 8601 8.410141 GGTACATTTAATTACTGGCTGCATTAA 58.590 33.333 0.50 0.04 0.00 1.40
5563 8617 6.321435 TGTTTGTGGACATGTGGTACATTTAA 59.679 34.615 1.15 0.00 43.82 1.52
5647 8701 7.370383 CACAATAAGTTGGTTATCACTTGCTT 58.630 34.615 0.00 0.00 39.70 3.91
5694 8748 3.441572 CAGAATTGAAGAGGAAACCGCAT 59.558 43.478 0.00 0.00 0.00 4.73
5733 8787 2.025037 TCAGCCCTGCCAAGATAAACAT 60.025 45.455 0.00 0.00 0.00 2.71
5776 8832 2.568062 TCCGGTGAAAACTACAGGCATA 59.432 45.455 0.00 0.00 34.03 3.14
5784 8840 2.706890 GGAGCATTCCGGTGAAAACTA 58.293 47.619 0.00 0.00 33.32 2.24
5830 8886 0.322098 CAAATACGTCCCCACTGGCA 60.322 55.000 0.00 0.00 0.00 4.92
5872 8928 0.737715 CCAGCACTACTTGTCCGAGC 60.738 60.000 0.00 0.00 0.00 5.03
6014 9070 2.102252 GGAGCTGTTCGATCTTCCTCAT 59.898 50.000 0.00 0.00 0.00 2.90
6037 9093 1.343465 TCCCTGAGGTCTTTCGACAAC 59.657 52.381 0.00 0.00 42.05 3.32
6039 9095 1.257743 CTCCCTGAGGTCTTTCGACA 58.742 55.000 0.00 0.00 42.05 4.35
6046 9102 1.000646 GACCGACTCCCTGAGGTCT 60.001 63.158 0.00 0.00 46.99 3.85
6079 9135 1.110442 CGCAGTTCTCCATCTCCTCT 58.890 55.000 0.00 0.00 0.00 3.69
6194 9250 0.179034 GGAGTGCCTGGCTGGATAAG 60.179 60.000 21.03 0.00 38.35 1.73
6210 9266 2.281761 ACAGGGCAGCAAACGGAG 60.282 61.111 0.00 0.00 0.00 4.63
6240 9296 7.589958 ACAATGTACAAATCCTTTGGTTGTA 57.410 32.000 0.00 0.00 44.81 2.41
6241 9297 6.478512 ACAATGTACAAATCCTTTGGTTGT 57.521 33.333 0.00 0.00 44.81 3.32
6242 9298 6.866248 GGTACAATGTACAAATCCTTTGGTTG 59.134 38.462 23.04 0.00 44.81 3.77
6247 9303 5.185056 GCTGGGTACAATGTACAAATCCTTT 59.815 40.000 23.04 0.00 0.00 3.11
6306 9362 4.380841 TCATCCGTAACTGTGGACATAC 57.619 45.455 0.00 0.00 37.02 2.39
6389 9446 3.819337 AGAAACAGACTAGCAGTACGACA 59.181 43.478 0.00 0.00 0.00 4.35
6431 9488 9.627395 ATCTAGAATACAAGTAATTCCGAATCG 57.373 33.333 0.00 0.00 0.00 3.34
6444 9501 9.144747 CGGAAATGGATGTATCTAGAATACAAG 57.855 37.037 14.78 0.00 37.93 3.16
6445 9502 8.866093 TCGGAAATGGATGTATCTAGAATACAA 58.134 33.333 14.78 4.48 37.93 2.41
6446 9503 8.417273 TCGGAAATGGATGTATCTAGAATACA 57.583 34.615 13.76 13.76 38.66 2.29
6447 9504 8.740906 TCTCGGAAATGGATGTATCTAGAATAC 58.259 37.037 0.00 1.22 0.00 1.89
6448 9505 8.740906 GTCTCGGAAATGGATGTATCTAGAATA 58.259 37.037 0.00 0.00 0.00 1.75
6449 9506 7.233553 TGTCTCGGAAATGGATGTATCTAGAAT 59.766 37.037 0.00 0.00 0.00 2.40
6452 9509 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
6454 9511 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
6455 9512 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
6457 9514 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
6458 9515 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
6459 9516 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
6460 9517 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
6461 9518 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
6462 9519 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
6463 9520 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
6465 9522 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
6466 9523 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
6467 9524 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
6468 9525 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
6469 9526 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
6472 9529 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6473 9530 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
6478 9535 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6479 9536 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
6480 9537 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
6481 9538 1.856629 ATTACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.04 33.41 4.30
6482 9539 2.734755 TATTACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
6483 9540 2.035576 CCTTATTACTCCCTCCGTTCGG 59.964 54.545 4.74 4.74 0.00 4.30
6485 9542 4.161001 TCAACCTTATTACTCCCTCCGTTC 59.839 45.833 0.00 0.00 0.00 3.95
6488 9545 3.490419 CGTCAACCTTATTACTCCCTCCG 60.490 52.174 0.00 0.00 0.00 4.63
6489 9546 3.740452 GCGTCAACCTTATTACTCCCTCC 60.740 52.174 0.00 0.00 0.00 4.30
6490 9547 3.118884 TGCGTCAACCTTATTACTCCCTC 60.119 47.826 0.00 0.00 0.00 4.30
6491 9548 2.835764 TGCGTCAACCTTATTACTCCCT 59.164 45.455 0.00 0.00 0.00 4.20
6492 9549 3.255969 TGCGTCAACCTTATTACTCCC 57.744 47.619 0.00 0.00 0.00 4.30
6493 9550 3.621715 CCTTGCGTCAACCTTATTACTCC 59.378 47.826 0.00 0.00 0.00 3.85
6494 9551 3.063588 GCCTTGCGTCAACCTTATTACTC 59.936 47.826 0.00 0.00 0.00 2.59
6496 9553 3.007635 AGCCTTGCGTCAACCTTATTAC 58.992 45.455 0.00 0.00 0.00 1.89
6497 9554 3.343941 AGCCTTGCGTCAACCTTATTA 57.656 42.857 0.00 0.00 0.00 0.98
6509 9627 2.869192 GGAAGATTAGAGAAGCCTTGCG 59.131 50.000 0.00 0.00 0.00 4.85
6516 9634 8.348507 GGTTAATGCATTGGAAGATTAGAGAAG 58.651 37.037 22.27 0.00 0.00 2.85
6517 9635 7.285401 GGGTTAATGCATTGGAAGATTAGAGAA 59.715 37.037 22.27 0.25 0.00 2.87
6518 9636 6.772716 GGGTTAATGCATTGGAAGATTAGAGA 59.227 38.462 22.27 0.00 0.00 3.10
6525 9872 4.097741 CGAATGGGTTAATGCATTGGAAGA 59.902 41.667 22.27 0.00 0.00 2.87
6528 9875 3.625853 TCGAATGGGTTAATGCATTGGA 58.374 40.909 22.27 7.68 0.00 3.53
6552 9899 8.129211 AGTGGTTTCGAAATCTTTAACTTGAAG 58.871 33.333 21.13 0.00 0.00 3.02
6553 9900 7.913297 CAGTGGTTTCGAAATCTTTAACTTGAA 59.087 33.333 21.13 0.00 0.00 2.69
6562 9909 1.886542 GGCCAGTGGTTTCGAAATCTT 59.113 47.619 21.13 7.69 0.00 2.40
6578 9925 1.742308 AGTACCTGGAAGAAAGGCCA 58.258 50.000 5.01 0.00 38.48 5.36
6585 9932 8.660295 TTATCTTCTGTTTAGTACCTGGAAGA 57.340 34.615 0.00 0.00 38.70 2.87
6592 9939 9.685828 CTATCAGCTTATCTTCTGTTTAGTACC 57.314 37.037 0.00 0.00 0.00 3.34
6595 9942 7.070571 AGCCTATCAGCTTATCTTCTGTTTAGT 59.929 37.037 0.00 0.00 41.41 2.24
6597 9944 7.366847 AGCCTATCAGCTTATCTTCTGTTTA 57.633 36.000 0.00 0.00 41.41 2.01
6633 9980 5.005971 TGTTAAAATTATCGACAGCGGTAGC 59.994 40.000 0.00 0.00 45.58 3.58
6639 9986 7.903431 CCAAGTACTGTTAAAATTATCGACAGC 59.097 37.037 0.00 0.00 40.95 4.40
6648 9995 6.472686 TGTTGGCCAAGTACTGTTAAAATT 57.527 33.333 21.21 0.00 0.00 1.82
6662 10009 1.895798 TGTGTGTTTCTTGTTGGCCAA 59.104 42.857 16.05 16.05 0.00 4.52
6665 10012 2.165437 TCCTTGTGTGTTTCTTGTTGGC 59.835 45.455 0.00 0.00 0.00 4.52
6675 10022 8.908903 TGTGAGTTTTATATTTCCTTGTGTGTT 58.091 29.630 0.00 0.00 0.00 3.32
6677 10024 7.807907 GGTGTGAGTTTTATATTTCCTTGTGTG 59.192 37.037 0.00 0.00 0.00 3.82
6683 10030 9.088987 ACATTTGGTGTGAGTTTTATATTTCCT 57.911 29.630 0.00 0.00 40.28 3.36
6684 10031 9.705290 AACATTTGGTGTGAGTTTTATATTTCC 57.295 29.630 0.00 0.00 41.14 3.13
6712 10065 6.034150 CGCTTTGACGTGTACATTACATCTTA 59.966 38.462 0.00 0.00 41.34 2.10
6737 10090 6.012658 TGTGGAAACTATTTTGTGAGCATC 57.987 37.500 0.00 0.00 0.00 3.91
6762 10116 4.523083 TGGGAAACTGAAGTGTATATGCC 58.477 43.478 0.00 0.00 0.00 4.40
6814 10168 3.087781 AGCTTTGGAAAGGAGAATCTGC 58.912 45.455 0.00 0.00 36.53 4.26
6830 10184 3.499918 GTCAGTTGTGTATGCAGAGCTTT 59.500 43.478 0.00 0.00 27.43 3.51
6848 10202 0.689623 AAGCCTGAGGGAACTGTCAG 59.310 55.000 0.00 0.00 44.43 3.51
6849 10203 2.024176 TAAGCCTGAGGGAACTGTCA 57.976 50.000 0.00 0.00 44.43 3.58
6850 10204 3.418684 TTTAAGCCTGAGGGAACTGTC 57.581 47.619 0.00 0.00 44.43 3.51
6851 10205 3.876309 TTTTAAGCCTGAGGGAACTGT 57.124 42.857 0.00 0.00 44.43 3.55
6871 10225 4.457257 GCTGCTGAGGAACTGTCTTATTTT 59.543 41.667 0.00 0.00 41.55 1.82
6872 10226 4.006319 GCTGCTGAGGAACTGTCTTATTT 58.994 43.478 0.00 0.00 41.55 1.40
6874 10228 2.568956 TGCTGCTGAGGAACTGTCTTAT 59.431 45.455 0.00 0.00 41.55 1.73
6876 10230 0.761187 TGCTGCTGAGGAACTGTCTT 59.239 50.000 0.00 0.00 41.55 3.01
6877 10231 0.982704 ATGCTGCTGAGGAACTGTCT 59.017 50.000 0.00 0.00 41.55 3.41
6878 10232 1.085091 CATGCTGCTGAGGAACTGTC 58.915 55.000 0.00 0.00 41.55 3.51
6879 10233 0.399454 ACATGCTGCTGAGGAACTGT 59.601 50.000 0.00 0.00 41.55 3.55
6880 10234 0.803117 CACATGCTGCTGAGGAACTG 59.197 55.000 0.00 0.00 41.55 3.16
6882 10236 1.747709 ATCACATGCTGCTGAGGAAC 58.252 50.000 0.00 0.00 0.00 3.62
6884 10238 2.809299 GCATATCACATGCTGCTGAGGA 60.809 50.000 0.00 1.81 41.52 3.71
6886 10240 1.535896 GGCATATCACATGCTGCTGAG 59.464 52.381 8.94 0.00 44.02 3.35
6888 10242 1.535896 GAGGCATATCACATGCTGCTG 59.464 52.381 8.94 0.00 44.02 4.41
6889 10243 1.420514 AGAGGCATATCACATGCTGCT 59.579 47.619 8.94 4.40 44.02 4.24
6890 10244 1.535896 CAGAGGCATATCACATGCTGC 59.464 52.381 8.94 0.00 44.02 5.25
6891 10245 2.806818 GACAGAGGCATATCACATGCTG 59.193 50.000 8.94 2.96 44.02 4.41
6892 10246 2.547430 CGACAGAGGCATATCACATGCT 60.547 50.000 8.94 0.00 44.02 3.79
6893 10247 1.797046 CGACAGAGGCATATCACATGC 59.203 52.381 0.55 0.55 43.85 4.06
6894 10248 3.055591 GTCGACAGAGGCATATCACATG 58.944 50.000 11.55 0.00 0.00 3.21
6896 10250 2.099405 TGTCGACAGAGGCATATCACA 58.901 47.619 15.76 0.00 0.00 3.58
6897 10251 2.860735 GTTGTCGACAGAGGCATATCAC 59.139 50.000 19.11 6.15 0.00 3.06
6899 10253 3.444703 AGTTGTCGACAGAGGCATATC 57.555 47.619 19.11 2.72 0.00 1.63
6900 10254 3.055819 ACAAGTTGTCGACAGAGGCATAT 60.056 43.478 19.11 0.00 0.00 1.78
6903 10257 0.464036 ACAAGTTGTCGACAGAGGCA 59.536 50.000 19.11 0.00 0.00 4.75
6904 10258 1.261619 CAACAAGTTGTCGACAGAGGC 59.738 52.381 19.11 10.39 35.92 4.70
6905 10259 1.867233 CCAACAAGTTGTCGACAGAGG 59.133 52.381 19.11 11.99 38.85 3.69
6906 10260 1.261619 GCCAACAAGTTGTCGACAGAG 59.738 52.381 19.11 11.98 38.85 3.35
6907 10261 1.295792 GCCAACAAGTTGTCGACAGA 58.704 50.000 19.11 7.32 38.85 3.41
6908 10262 1.013596 TGCCAACAAGTTGTCGACAG 58.986 50.000 19.11 9.66 38.85 3.51
6909 10263 1.674359 ATGCCAACAAGTTGTCGACA 58.326 45.000 15.76 15.76 38.85 4.35
6910 10264 2.774439 AATGCCAACAAGTTGTCGAC 57.226 45.000 9.40 9.11 38.85 4.20
6911 10265 2.685388 TCAAATGCCAACAAGTTGTCGA 59.315 40.909 9.40 0.00 38.85 4.20
6912 10266 2.788786 GTCAAATGCCAACAAGTTGTCG 59.211 45.455 9.40 0.00 38.85 4.35
6913 10267 3.779759 TGTCAAATGCCAACAAGTTGTC 58.220 40.909 9.40 0.00 38.85 3.18
6914 10268 3.883830 TGTCAAATGCCAACAAGTTGT 57.116 38.095 1.64 1.64 38.85 3.32
6915 10269 5.175491 GTGTATGTCAAATGCCAACAAGTTG 59.825 40.000 0.00 0.00 40.13 3.16
6916 10270 5.163468 TGTGTATGTCAAATGCCAACAAGTT 60.163 36.000 0.00 0.00 0.00 2.66
6917 10271 4.340666 TGTGTATGTCAAATGCCAACAAGT 59.659 37.500 0.00 0.00 0.00 3.16
6918 10272 4.869215 TGTGTATGTCAAATGCCAACAAG 58.131 39.130 0.00 0.00 0.00 3.16
6919 10273 4.926140 TGTGTATGTCAAATGCCAACAA 57.074 36.364 0.00 0.00 0.00 2.83
6920 10274 4.926140 TTGTGTATGTCAAATGCCAACA 57.074 36.364 0.00 0.00 0.00 3.33
6921 10275 6.423302 TGATTTTGTGTATGTCAAATGCCAAC 59.577 34.615 0.00 0.00 35.25 3.77
6922 10276 6.519382 TGATTTTGTGTATGTCAAATGCCAA 58.481 32.000 0.00 0.00 35.25 4.52
6923 10277 6.094193 TGATTTTGTGTATGTCAAATGCCA 57.906 33.333 0.00 0.00 35.25 4.92
6924 10278 6.158598 ACTGATTTTGTGTATGTCAAATGCC 58.841 36.000 0.00 0.00 35.25 4.40
6925 10279 7.642071 AACTGATTTTGTGTATGTCAAATGC 57.358 32.000 0.00 0.00 35.25 3.56
6935 10289 9.685828 GCCTTTGTATTTAACTGATTTTGTGTA 57.314 29.630 0.00 0.00 0.00 2.90
6936 10290 7.655732 GGCCTTTGTATTTAACTGATTTTGTGT 59.344 33.333 0.00 0.00 0.00 3.72
6937 10291 7.655328 TGGCCTTTGTATTTAACTGATTTTGTG 59.345 33.333 3.32 0.00 0.00 3.33
6938 10292 7.731054 TGGCCTTTGTATTTAACTGATTTTGT 58.269 30.769 3.32 0.00 0.00 2.83
6939 10293 8.600449 TTGGCCTTTGTATTTAACTGATTTTG 57.400 30.769 3.32 0.00 0.00 2.44
6940 10294 9.218440 CATTGGCCTTTGTATTTAACTGATTTT 57.782 29.630 3.32 0.00 0.00 1.82
6941 10295 8.592809 TCATTGGCCTTTGTATTTAACTGATTT 58.407 29.630 3.32 0.00 0.00 2.17
6942 10296 8.034804 GTCATTGGCCTTTGTATTTAACTGATT 58.965 33.333 3.32 0.00 0.00 2.57
6943 10297 7.397192 AGTCATTGGCCTTTGTATTTAACTGAT 59.603 33.333 3.32 0.00 0.00 2.90
6944 10298 6.719370 AGTCATTGGCCTTTGTATTTAACTGA 59.281 34.615 3.32 0.00 0.00 3.41
6945 10299 6.808212 CAGTCATTGGCCTTTGTATTTAACTG 59.192 38.462 3.32 6.37 0.00 3.16
6946 10300 6.493458 ACAGTCATTGGCCTTTGTATTTAACT 59.507 34.615 3.32 0.00 0.00 2.24
6947 10301 6.687604 ACAGTCATTGGCCTTTGTATTTAAC 58.312 36.000 3.32 0.00 0.00 2.01
6948 10302 6.491745 TGACAGTCATTGGCCTTTGTATTTAA 59.508 34.615 3.32 0.00 31.91 1.52
6949 10303 6.007076 TGACAGTCATTGGCCTTTGTATTTA 58.993 36.000 3.32 0.00 31.91 1.40
6950 10304 4.832266 TGACAGTCATTGGCCTTTGTATTT 59.168 37.500 3.32 0.00 31.91 1.40
6951 10305 4.406456 TGACAGTCATTGGCCTTTGTATT 58.594 39.130 3.32 0.00 31.91 1.89
6952 10306 4.032960 TGACAGTCATTGGCCTTTGTAT 57.967 40.909 3.32 0.00 31.91 2.29
6953 10307 3.500448 TGACAGTCATTGGCCTTTGTA 57.500 42.857 3.32 0.00 31.91 2.41
6954 10308 2.363306 TGACAGTCATTGGCCTTTGT 57.637 45.000 3.32 0.00 31.91 2.83
6955 10309 2.821378 TCATGACAGTCATTGGCCTTTG 59.179 45.455 13.79 1.80 34.28 2.77
6956 10310 3.159213 TCATGACAGTCATTGGCCTTT 57.841 42.857 13.79 0.00 34.28 3.11
6957 10311 2.885135 TCATGACAGTCATTGGCCTT 57.115 45.000 13.79 0.00 34.28 4.35
6958 10312 3.053842 AGAATCATGACAGTCATTGGCCT 60.054 43.478 13.79 6.41 34.28 5.19
6959 10313 3.285484 AGAATCATGACAGTCATTGGCC 58.715 45.455 13.79 0.00 34.28 5.36
6960 10314 3.943381 TGAGAATCATGACAGTCATTGGC 59.057 43.478 13.79 4.13 42.56 4.52
6993 10348 8.150945 TCTGCAATAGTAACTTCTCTGAAACTT 58.849 33.333 0.00 0.00 0.00 2.66
7024 10379 1.098050 GAATTGGCAATGAGACCGCT 58.902 50.000 14.47 0.00 0.00 5.52
7026 10381 2.358957 TCTGAATTGGCAATGAGACCG 58.641 47.619 14.47 3.31 0.00 4.79
7028 10383 6.921857 CCATATTTCTGAATTGGCAATGAGAC 59.078 38.462 14.47 6.74 0.00 3.36
7083 10438 1.040646 CAGATCGGGGCTACAGCTAA 58.959 55.000 0.54 0.00 41.70 3.09
7085 10440 0.687757 TTCAGATCGGGGCTACAGCT 60.688 55.000 0.54 0.00 41.70 4.24
7095 10450 1.329906 GATTGCACTGCTTCAGATCGG 59.670 52.381 1.98 0.00 35.18 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.