Multiple sequence alignment - TraesCS4B01G213900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G213900 chr4B 100.000 3598 0 0 1 3598 453244374 453247971 0.000000e+00 6645.0
1 TraesCS4B01G213900 chr4D 90.262 1068 56 18 837 1878 368004803 368005848 0.000000e+00 1352.0
2 TraesCS4B01G213900 chr4D 94.663 787 34 5 1958 2740 368005848 368006630 0.000000e+00 1214.0
3 TraesCS4B01G213900 chr4D 96.732 306 9 1 3293 3598 368007399 368007703 3.200000e-140 508.0
4 TraesCS4B01G213900 chr4D 96.154 78 3 0 3213 3290 365398690 365398767 1.050000e-25 128.0
5 TraesCS4B01G213900 chr4A 89.104 1083 59 21 837 1879 97262399 97261336 0.000000e+00 1291.0
6 TraesCS4B01G213900 chr4A 94.005 784 42 3 1961 2740 97261340 97260558 0.000000e+00 1182.0
7 TraesCS4B01G213900 chr4A 96.066 305 10 2 3293 3596 97259918 97259615 2.500000e-136 496.0
8 TraesCS4B01G213900 chr4A 90.278 72 5 2 3193 3262 649897856 649897927 3.820000e-15 93.5
9 TraesCS4B01G213900 chr1D 93.838 714 38 5 1 709 457046703 457045991 0.000000e+00 1070.0
10 TraesCS4B01G213900 chrUn 92.968 711 48 1 1 709 41025322 41024612 0.000000e+00 1035.0
11 TraesCS4B01G213900 chrUn 95.000 100 4 1 1866 1964 62690461 62690560 4.810000e-34 156.0
12 TraesCS4B01G213900 chr6B 92.827 711 47 3 1 709 707023230 707023938 0.000000e+00 1027.0
13 TraesCS4B01G213900 chr6B 89.347 704 71 3 8 709 341759602 341760303 0.000000e+00 881.0
14 TraesCS4B01G213900 chr6B 96.703 91 3 0 1869 1959 96970754 96970844 6.220000e-33 152.0
15 TraesCS4B01G213900 chr6B 92.208 77 0 3 3214 3290 129241325 129241255 1.770000e-18 104.0
16 TraesCS4B01G213900 chr3B 92.405 711 52 1 1 709 776525024 776524314 0.000000e+00 1013.0
17 TraesCS4B01G213900 chr3B 81.977 344 56 5 374 713 655035021 655035362 1.630000e-73 287.0
18 TraesCS4B01G213900 chr3B 100.000 86 0 0 1874 1959 407184976 407184891 3.720000e-35 159.0
19 TraesCS4B01G213900 chr3B 97.753 89 2 0 1874 1962 472309440 472309352 1.730000e-33 154.0
20 TraesCS4B01G213900 chr3B 96.739 92 2 1 1868 1959 18747559 18747649 6.220000e-33 152.0
21 TraesCS4B01G213900 chr3B 94.845 97 5 0 1872 1968 310291430 310291526 6.220000e-33 152.0
22 TraesCS4B01G213900 chr3B 91.358 81 4 3 3214 3293 62010524 62010446 1.370000e-19 108.0
23 TraesCS4B01G213900 chr3B 91.026 78 4 3 3214 3290 61290506 61290431 6.360000e-18 102.0
24 TraesCS4B01G213900 chr3B 89.157 83 5 4 3214 3294 67913358 67913278 2.290000e-17 100.0
25 TraesCS4B01G213900 chr7B 92.254 710 54 1 1 709 449818332 449817623 0.000000e+00 1005.0
26 TraesCS4B01G213900 chr1B 90.155 711 67 2 1 709 139068104 139068813 0.000000e+00 922.0
27 TraesCS4B01G213900 chr7D 89.540 631 59 6 55 681 65715344 65715971 0.000000e+00 793.0
28 TraesCS4B01G213900 chr7D 88.596 114 11 2 1874 1985 32381746 32381633 1.740000e-28 137.0
29 TraesCS4B01G213900 chr5B 88.409 509 54 5 9 517 9689837 9689334 3.070000e-170 608.0
30 TraesCS4B01G213900 chr5B 92.683 82 2 4 3210 3290 339425760 339425838 8.160000e-22 115.0
31 TraesCS4B01G213900 chr5A 94.949 99 3 2 1865 1963 207681821 207681917 1.730000e-33 154.0
32 TraesCS4B01G213900 chr7A 94.792 96 5 0 1871 1966 431990993 431990898 2.240000e-32 150.0
33 TraesCS4B01G213900 chr7A 93.827 81 4 1 3211 3291 733336880 733336959 1.750000e-23 121.0
34 TraesCS4B01G213900 chr2A 92.683 82 4 2 3214 3295 705538830 705538909 2.270000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G213900 chr4B 453244374 453247971 3597 False 6645.000000 6645 100.000000 1 3598 1 chr4B.!!$F1 3597
1 TraesCS4B01G213900 chr4D 368004803 368007703 2900 False 1024.666667 1352 93.885667 837 3598 3 chr4D.!!$F2 2761
2 TraesCS4B01G213900 chr4A 97259615 97262399 2784 True 989.666667 1291 93.058333 837 3596 3 chr4A.!!$R1 2759
3 TraesCS4B01G213900 chr1D 457045991 457046703 712 True 1070.000000 1070 93.838000 1 709 1 chr1D.!!$R1 708
4 TraesCS4B01G213900 chrUn 41024612 41025322 710 True 1035.000000 1035 92.968000 1 709 1 chrUn.!!$R1 708
5 TraesCS4B01G213900 chr6B 707023230 707023938 708 False 1027.000000 1027 92.827000 1 709 1 chr6B.!!$F3 708
6 TraesCS4B01G213900 chr6B 341759602 341760303 701 False 881.000000 881 89.347000 8 709 1 chr6B.!!$F2 701
7 TraesCS4B01G213900 chr3B 776524314 776525024 710 True 1013.000000 1013 92.405000 1 709 1 chr3B.!!$R6 708
8 TraesCS4B01G213900 chr7B 449817623 449818332 709 True 1005.000000 1005 92.254000 1 709 1 chr7B.!!$R1 708
9 TraesCS4B01G213900 chr1B 139068104 139068813 709 False 922.000000 922 90.155000 1 709 1 chr1B.!!$F1 708
10 TraesCS4B01G213900 chr7D 65715344 65715971 627 False 793.000000 793 89.540000 55 681 1 chr7D.!!$F1 626
11 TraesCS4B01G213900 chr5B 9689334 9689837 503 True 608.000000 608 88.409000 9 517 1 chr5B.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 824 0.107165 GCGGTGCTAATCCCCTTTCT 60.107 55.0 0.0 0.0 0.0 2.52 F
1889 1939 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.0 0.0 0.0 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 1986 0.258484 TCCCTCCGTCCCGTAATGTA 59.742 55.0 0.00 0.0 0.0 2.29 R
3072 3134 0.370273 CTTAAACAGCAGCGCTACCG 59.630 55.0 10.99 0.0 36.4 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.224315 CACCATCCCTCCGCATCAA 59.776 57.895 0.00 0.00 0.00 2.57
107 108 4.626402 TTCCCGACCCCGTCCACT 62.626 66.667 0.00 0.00 0.00 4.00
179 181 4.382541 CCCACCTTGCCCCCTTCC 62.383 72.222 0.00 0.00 0.00 3.46
326 331 0.256464 TGTGGGTGTCGTTTCCCTTT 59.744 50.000 11.35 0.00 43.74 3.11
352 357 2.019897 GCGCTGCCATGGCCTTTATT 62.020 55.000 33.44 0.00 41.09 1.40
422 427 2.027169 GATAGCGGCGGCGTAACT 59.973 61.111 32.35 22.46 46.35 2.24
459 466 3.475566 TGAAGGCGCTATCTTGCTAAT 57.524 42.857 7.64 0.00 0.00 1.73
509 516 4.238514 AGATGTTTGACGTCTTGCTAGTC 58.761 43.478 17.92 6.49 41.41 2.59
521 528 1.194121 TGCTAGTCTGGCTTGCCTCA 61.194 55.000 12.85 0.00 43.63 3.86
531 538 2.233922 TGGCTTGCCTCACTAGTTCTAC 59.766 50.000 13.18 0.00 0.00 2.59
640 649 5.515184 CGTTCATGTCATGTTTTGTAACCA 58.485 37.500 12.54 0.00 33.15 3.67
643 653 7.370383 GTTCATGTCATGTTTTGTAACCATCT 58.630 34.615 12.54 0.00 33.15 2.90
658 668 6.811665 TGTAACCATCTTCTGTACTCAATTCG 59.188 38.462 0.00 0.00 0.00 3.34
718 728 1.710013 TCGCGAGAAAGACAATGACC 58.290 50.000 3.71 0.00 37.03 4.02
719 729 1.272490 TCGCGAGAAAGACAATGACCT 59.728 47.619 3.71 0.00 37.03 3.85
720 730 1.656095 CGCGAGAAAGACAATGACCTC 59.344 52.381 0.00 0.00 0.00 3.85
721 731 2.672478 CGCGAGAAAGACAATGACCTCT 60.672 50.000 0.00 0.00 0.00 3.69
722 732 3.330267 GCGAGAAAGACAATGACCTCTT 58.670 45.455 0.00 0.00 0.00 2.85
723 733 3.748568 GCGAGAAAGACAATGACCTCTTT 59.251 43.478 0.00 0.00 39.04 2.52
724 734 4.214332 GCGAGAAAGACAATGACCTCTTTT 59.786 41.667 0.00 0.00 36.95 2.27
725 735 5.408604 GCGAGAAAGACAATGACCTCTTTTA 59.591 40.000 0.00 0.00 36.95 1.52
726 736 6.073222 GCGAGAAAGACAATGACCTCTTTTAA 60.073 38.462 0.00 0.00 36.95 1.52
727 737 7.361286 GCGAGAAAGACAATGACCTCTTTTAAT 60.361 37.037 0.00 0.00 36.95 1.40
728 738 8.507249 CGAGAAAGACAATGACCTCTTTTAATT 58.493 33.333 0.00 0.00 36.95 1.40
734 744 9.588096 AGACAATGACCTCTTTTAATTTAACCT 57.412 29.630 0.00 0.00 0.00 3.50
746 756 9.797556 CTTTTAATTTAACCTAAAGAATCCCCG 57.202 33.333 0.00 0.00 0.00 5.73
747 757 7.885009 TTAATTTAACCTAAAGAATCCCCGG 57.115 36.000 0.00 0.00 0.00 5.73
748 758 5.720486 ATTTAACCTAAAGAATCCCCGGA 57.280 39.130 0.73 0.00 0.00 5.14
749 759 5.517620 TTTAACCTAAAGAATCCCCGGAA 57.482 39.130 0.73 0.00 0.00 4.30
750 760 5.517620 TTAACCTAAAGAATCCCCGGAAA 57.482 39.130 0.73 0.00 0.00 3.13
751 761 3.646736 ACCTAAAGAATCCCCGGAAAG 57.353 47.619 0.73 0.00 0.00 2.62
752 762 2.298610 CCTAAAGAATCCCCGGAAAGC 58.701 52.381 0.73 0.00 0.00 3.51
753 763 2.298610 CTAAAGAATCCCCGGAAAGCC 58.701 52.381 0.73 0.00 0.00 4.35
763 773 2.962569 GGAAAGCCGAAACAGCCC 59.037 61.111 0.00 0.00 0.00 5.19
764 774 1.901464 GGAAAGCCGAAACAGCCCA 60.901 57.895 0.00 0.00 0.00 5.36
765 775 1.285950 GAAAGCCGAAACAGCCCAC 59.714 57.895 0.00 0.00 0.00 4.61
766 776 1.452145 GAAAGCCGAAACAGCCCACA 61.452 55.000 0.00 0.00 0.00 4.17
767 777 0.827507 AAAGCCGAAACAGCCCACAT 60.828 50.000 0.00 0.00 0.00 3.21
768 778 1.526575 AAGCCGAAACAGCCCACATG 61.527 55.000 0.00 0.00 0.00 3.21
769 779 1.971167 GCCGAAACAGCCCACATGA 60.971 57.895 0.00 0.00 0.00 3.07
770 780 1.875963 CCGAAACAGCCCACATGAC 59.124 57.895 0.00 0.00 0.00 3.06
771 781 1.586154 CCGAAACAGCCCACATGACC 61.586 60.000 0.00 0.00 0.00 4.02
772 782 1.875963 GAAACAGCCCACATGACCG 59.124 57.895 0.00 0.00 0.00 4.79
773 783 0.605319 GAAACAGCCCACATGACCGA 60.605 55.000 0.00 0.00 0.00 4.69
774 784 0.179004 AAACAGCCCACATGACCGAA 60.179 50.000 0.00 0.00 0.00 4.30
775 785 0.179004 AACAGCCCACATGACCGAAA 60.179 50.000 0.00 0.00 0.00 3.46
776 786 0.179004 ACAGCCCACATGACCGAAAA 60.179 50.000 0.00 0.00 0.00 2.29
777 787 1.176527 CAGCCCACATGACCGAAAAT 58.823 50.000 0.00 0.00 0.00 1.82
778 788 1.133025 CAGCCCACATGACCGAAAATC 59.867 52.381 0.00 0.00 0.00 2.17
779 789 1.173043 GCCCACATGACCGAAAATCA 58.827 50.000 0.00 0.00 0.00 2.57
780 790 1.543802 GCCCACATGACCGAAAATCAA 59.456 47.619 0.00 0.00 0.00 2.57
781 791 2.671070 GCCCACATGACCGAAAATCAAC 60.671 50.000 0.00 0.00 0.00 3.18
782 792 2.819608 CCCACATGACCGAAAATCAACT 59.180 45.455 0.00 0.00 0.00 3.16
783 793 3.119849 CCCACATGACCGAAAATCAACTC 60.120 47.826 0.00 0.00 0.00 3.01
784 794 3.424829 CCACATGACCGAAAATCAACTCG 60.425 47.826 0.00 0.00 34.83 4.18
789 799 1.423845 CGAAAATCAACTCGGGCCG 59.576 57.895 22.51 22.51 0.00 6.13
790 800 1.800681 GAAAATCAACTCGGGCCGG 59.199 57.895 27.98 19.08 0.00 6.13
791 801 0.958876 GAAAATCAACTCGGGCCGGT 60.959 55.000 27.98 19.79 0.00 5.28
792 802 0.958876 AAAATCAACTCGGGCCGGTC 60.959 55.000 27.98 0.00 0.00 4.79
793 803 3.659089 AATCAACTCGGGCCGGTCG 62.659 63.158 27.98 17.02 0.00 4.79
805 815 4.524318 CGGTCGGGCGGTGCTAAT 62.524 66.667 0.00 0.00 0.00 1.73
806 816 2.588034 GGTCGGGCGGTGCTAATC 60.588 66.667 0.00 0.00 0.00 1.75
807 817 2.588034 GTCGGGCGGTGCTAATCC 60.588 66.667 0.00 0.00 0.00 3.01
808 818 3.857038 TCGGGCGGTGCTAATCCC 61.857 66.667 0.00 0.00 35.42 3.85
809 819 4.929707 CGGGCGGTGCTAATCCCC 62.930 72.222 0.00 0.00 35.32 4.81
810 820 3.489513 GGGCGGTGCTAATCCCCT 61.490 66.667 0.00 0.00 32.60 4.79
811 821 2.595655 GGCGGTGCTAATCCCCTT 59.404 61.111 0.00 0.00 0.00 3.95
812 822 1.076995 GGCGGTGCTAATCCCCTTT 60.077 57.895 0.00 0.00 0.00 3.11
813 823 1.101635 GGCGGTGCTAATCCCCTTTC 61.102 60.000 0.00 0.00 0.00 2.62
814 824 0.107165 GCGGTGCTAATCCCCTTTCT 60.107 55.000 0.00 0.00 0.00 2.52
815 825 1.668419 CGGTGCTAATCCCCTTTCTG 58.332 55.000 0.00 0.00 0.00 3.02
816 826 1.065418 CGGTGCTAATCCCCTTTCTGT 60.065 52.381 0.00 0.00 0.00 3.41
817 827 2.618045 CGGTGCTAATCCCCTTTCTGTT 60.618 50.000 0.00 0.00 0.00 3.16
818 828 3.017442 GGTGCTAATCCCCTTTCTGTTC 58.983 50.000 0.00 0.00 0.00 3.18
819 829 3.017442 GTGCTAATCCCCTTTCTGTTCC 58.983 50.000 0.00 0.00 0.00 3.62
820 830 2.025321 TGCTAATCCCCTTTCTGTTCCC 60.025 50.000 0.00 0.00 0.00 3.97
821 831 2.687014 GCTAATCCCCTTTCTGTTCCCC 60.687 54.545 0.00 0.00 0.00 4.81
822 832 0.331616 AATCCCCTTTCTGTTCCCCG 59.668 55.000 0.00 0.00 0.00 5.73
823 833 0.845102 ATCCCCTTTCTGTTCCCCGT 60.845 55.000 0.00 0.00 0.00 5.28
824 834 1.002502 CCCCTTTCTGTTCCCCGTC 60.003 63.158 0.00 0.00 0.00 4.79
825 835 1.758592 CCCTTTCTGTTCCCCGTCA 59.241 57.895 0.00 0.00 0.00 4.35
826 836 0.109723 CCCTTTCTGTTCCCCGTCAA 59.890 55.000 0.00 0.00 0.00 3.18
827 837 1.477923 CCCTTTCTGTTCCCCGTCAAA 60.478 52.381 0.00 0.00 0.00 2.69
828 838 2.303175 CCTTTCTGTTCCCCGTCAAAA 58.697 47.619 0.00 0.00 0.00 2.44
829 839 2.691011 CCTTTCTGTTCCCCGTCAAAAA 59.309 45.455 0.00 0.00 0.00 1.94
856 866 6.459670 AAACCTTTCTGTTCGGTTGTTTAT 57.540 33.333 0.00 0.00 40.67 1.40
883 893 2.664851 CACGACGAAAGGCAGGCA 60.665 61.111 0.00 0.00 41.50 4.75
886 896 1.741401 CGACGAAAGGCAGGCATCA 60.741 57.895 0.00 0.00 41.50 3.07
887 897 1.699656 CGACGAAAGGCAGGCATCAG 61.700 60.000 0.00 0.00 41.50 2.90
958 969 4.483243 GGAAGGAATCCGCCGCCA 62.483 66.667 0.00 0.00 38.79 5.69
1020 1054 2.725008 GAGTCGGGAGCCAGATCG 59.275 66.667 0.00 0.00 0.00 3.69
1217 1262 3.741344 CGTAGCTGCACTTAGAACTTTGT 59.259 43.478 1.02 0.00 0.00 2.83
1280 1325 6.510879 TCTATCTCTCGTGCTTTCTTGTTA 57.489 37.500 0.00 0.00 0.00 2.41
1326 1371 2.427320 GCAGTCAGTCAGCACCCA 59.573 61.111 0.00 0.00 0.00 4.51
1344 1389 3.187700 CCCACATCTGCGAACTAAGTAC 58.812 50.000 0.00 0.00 0.00 2.73
1346 1391 3.859961 CCACATCTGCGAACTAAGTACTG 59.140 47.826 0.00 0.00 0.00 2.74
1450 1499 2.353269 CCAACTTGTCACAACTTACGCA 59.647 45.455 0.00 0.00 0.00 5.24
1473 1522 4.660303 AGTGGTGAAAGATCAGGGCATATA 59.340 41.667 0.00 0.00 35.88 0.86
1474 1523 5.311649 AGTGGTGAAAGATCAGGGCATATAT 59.688 40.000 0.00 0.00 35.88 0.86
1475 1524 6.006449 GTGGTGAAAGATCAGGGCATATATT 58.994 40.000 0.00 0.00 35.88 1.28
1477 1526 6.183361 TGGTGAAAGATCAGGGCATATATTGA 60.183 38.462 0.00 0.00 35.88 2.57
1486 1535 9.890629 GATCAGGGCATATATTGAAGTATGTAA 57.109 33.333 0.00 0.00 32.27 2.41
1504 1553 4.817517 TGTAAAGATGTTCCTTCTCGGTC 58.182 43.478 0.00 0.00 0.00 4.79
1505 1554 3.336138 AAAGATGTTCCTTCTCGGTCC 57.664 47.619 0.00 0.00 0.00 4.46
1506 1555 0.818296 AGATGTTCCTTCTCGGTCCG 59.182 55.000 4.39 4.39 0.00 4.79
1507 1556 0.531200 GATGTTCCTTCTCGGTCCGT 59.469 55.000 11.88 0.00 0.00 4.69
1513 1562 2.731572 TCCTTCTCGGTCCGTAGAAAT 58.268 47.619 19.77 0.00 31.61 2.17
1531 1580 5.189180 AGAAATAGACAGCAATTGAGGTCC 58.811 41.667 19.97 9.32 0.00 4.46
1536 1585 1.004044 ACAGCAATTGAGGTCCCTCTG 59.996 52.381 10.34 6.75 43.12 3.35
1543 1592 1.342074 TGAGGTCCCTCTGTCAACTG 58.658 55.000 14.20 0.00 43.12 3.16
1548 1597 1.141053 GTCCCTCTGTCAACTGTTGGT 59.859 52.381 19.55 0.00 0.00 3.67
1554 1603 3.476552 TCTGTCAACTGTTGGTCCATTC 58.523 45.455 19.55 4.10 0.00 2.67
1579 1628 2.812011 GGGCACTGTTCGTCATTAGTTT 59.188 45.455 0.00 0.00 0.00 2.66
1586 1636 5.694910 ACTGTTCGTCATTAGTTTTGTCGAT 59.305 36.000 0.00 0.00 35.30 3.59
1588 1638 7.041187 TGTTCGTCATTAGTTTTGTCGATAC 57.959 36.000 0.00 0.00 35.30 2.24
1626 1676 3.989787 CACCCGTTTTGCAGCCCC 61.990 66.667 0.00 0.00 0.00 5.80
1698 1748 7.237471 TCATGAATTGGTAGCTGATAGGGATAA 59.763 37.037 0.00 0.00 0.00 1.75
1730 1780 8.871686 ATATTTTGGTCTTTGTCAAGTTTCAC 57.128 30.769 0.00 0.00 0.00 3.18
1767 1817 3.481453 TGACGTTGACATGAATTTGGGA 58.519 40.909 0.00 0.00 0.00 4.37
1770 1820 4.870363 ACGTTGACATGAATTTGGGAAAG 58.130 39.130 0.00 0.00 0.00 2.62
1817 1867 0.694771 AGTGCAAGAGGCCAAGATCA 59.305 50.000 5.01 0.00 43.89 2.92
1839 1889 5.101628 CACACGGCAATAACAAGCATTTAT 58.898 37.500 0.00 0.00 0.00 1.40
1878 1928 8.668510 TGGCTTTCATTTCTTATCATCTACTC 57.331 34.615 0.00 0.00 0.00 2.59
1879 1929 7.716998 TGGCTTTCATTTCTTATCATCTACTCC 59.283 37.037 0.00 0.00 0.00 3.85
1880 1930 7.174080 GGCTTTCATTTCTTATCATCTACTCCC 59.826 40.741 0.00 0.00 0.00 4.30
1881 1931 7.936301 GCTTTCATTTCTTATCATCTACTCCCT 59.064 37.037 0.00 0.00 0.00 4.20
1882 1932 9.487790 CTTTCATTTCTTATCATCTACTCCCTC 57.512 37.037 0.00 0.00 0.00 4.30
1883 1933 7.546250 TCATTTCTTATCATCTACTCCCTCC 57.454 40.000 0.00 0.00 0.00 4.30
1884 1934 6.209589 TCATTTCTTATCATCTACTCCCTCCG 59.790 42.308 0.00 0.00 0.00 4.63
1885 1935 4.726035 TCTTATCATCTACTCCCTCCGT 57.274 45.455 0.00 0.00 0.00 4.69
1886 1936 4.653868 TCTTATCATCTACTCCCTCCGTC 58.346 47.826 0.00 0.00 0.00 4.79
1887 1937 2.296073 ATCATCTACTCCCTCCGTCC 57.704 55.000 0.00 0.00 0.00 4.79
1888 1938 0.185416 TCATCTACTCCCTCCGTCCC 59.815 60.000 0.00 0.00 0.00 4.46
1889 1939 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
1890 1940 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
1891 1941 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
1892 1942 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
1893 1943 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
1894 1944 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1895 1945 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1896 1946 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1897 1947 2.563179 CTCCCTCCGTCCCATAATGTAG 59.437 54.545 0.00 0.00 0.00 2.74
1898 1948 1.623811 CCCTCCGTCCCATAATGTAGG 59.376 57.143 0.00 0.00 0.00 3.18
1899 1949 2.605257 CCTCCGTCCCATAATGTAGGA 58.395 52.381 0.00 0.00 0.00 2.94
1900 1950 2.299297 CCTCCGTCCCATAATGTAGGAC 59.701 54.545 0.00 0.00 45.49 3.85
1948 1998 5.596268 AAAAACGTCTTACATTACGGGAC 57.404 39.130 0.00 0.00 43.25 4.46
2083 2133 2.803451 CACTGCATAGTCGGTCTCTTC 58.197 52.381 0.00 0.00 34.07 2.87
2108 2158 5.353394 TCTGACGCCACCTTATTTAATCT 57.647 39.130 0.00 0.00 0.00 2.40
2129 2179 2.824936 TGGGCTTACCATGATTGTGTTG 59.175 45.455 0.00 0.00 46.80 3.33
2189 2239 2.417787 GCTGGATGGGATTGCTGAAAAC 60.418 50.000 0.00 0.00 0.00 2.43
2417 2467 2.498481 CAATGTACCCGTCAGGAGGTTA 59.502 50.000 0.00 0.00 41.02 2.85
2447 2497 3.334891 ACCGGCAGGCATTGGGTA 61.335 61.111 0.00 0.00 42.76 3.69
2537 2587 6.336566 TCAGTGCAAAGAAAAACTAATTGCA 58.663 32.000 7.33 7.33 44.69 4.08
2615 2665 2.004733 TGATTGCACTGCTTCAGATCG 58.995 47.619 1.98 0.00 35.18 3.69
2616 2666 1.329906 GATTGCACTGCTTCAGATCGG 59.670 52.381 1.98 0.00 35.18 4.18
2626 2680 0.687757 TTCAGATCGGGGCTACAGCT 60.688 55.000 0.54 0.00 41.70 4.24
2628 2682 1.040646 CAGATCGGGGCTACAGCTAA 58.959 55.000 0.54 0.00 41.70 3.09
2683 2737 6.921857 CCATATTTCTGAATTGGCAATGAGAC 59.078 38.462 14.47 6.74 0.00 3.36
2685 2739 2.358957 TCTGAATTGGCAATGAGACCG 58.641 47.619 14.47 3.31 0.00 4.79
2687 2741 1.098050 GAATTGGCAATGAGACCGCT 58.902 50.000 14.47 0.00 0.00 5.52
2718 2772 8.150945 TCTGCAATAGTAACTTCTCTGAAACTT 58.849 33.333 0.00 0.00 0.00 2.66
2751 2806 3.943381 TGAGAATCATGACAGTCATTGGC 59.057 43.478 13.79 4.13 42.56 4.52
2752 2807 3.285484 AGAATCATGACAGTCATTGGCC 58.715 45.455 13.79 0.00 34.28 5.36
2753 2808 3.053842 AGAATCATGACAGTCATTGGCCT 60.054 43.478 13.79 6.41 34.28 5.19
2754 2809 2.885135 TCATGACAGTCATTGGCCTT 57.115 45.000 13.79 0.00 34.28 4.35
2756 2811 2.821378 TCATGACAGTCATTGGCCTTTG 59.179 45.455 13.79 1.80 34.28 2.77
2757 2812 2.363306 TGACAGTCATTGGCCTTTGT 57.637 45.000 3.32 0.00 31.91 2.83
2759 2814 4.032960 TGACAGTCATTGGCCTTTGTAT 57.967 40.909 3.32 0.00 31.91 2.29
2760 2815 4.406456 TGACAGTCATTGGCCTTTGTATT 58.594 39.130 3.32 0.00 31.91 1.89
2763 2818 6.491745 TGACAGTCATTGGCCTTTGTATTTAA 59.508 34.615 3.32 0.00 31.91 1.52
2764 2819 6.687604 ACAGTCATTGGCCTTTGTATTTAAC 58.312 36.000 3.32 0.00 0.00 2.01
2767 2822 6.719370 AGTCATTGGCCTTTGTATTTAACTGA 59.281 34.615 3.32 0.00 0.00 3.41
2768 2823 7.397192 AGTCATTGGCCTTTGTATTTAACTGAT 59.603 33.333 3.32 0.00 0.00 2.90
2770 2825 8.592809 TCATTGGCCTTTGTATTTAACTGATTT 58.407 29.630 3.32 0.00 0.00 2.17
2771 2826 9.218440 CATTGGCCTTTGTATTTAACTGATTTT 57.782 29.630 3.32 0.00 0.00 1.82
2772 2827 8.600449 TTGGCCTTTGTATTTAACTGATTTTG 57.400 30.769 3.32 0.00 0.00 2.44
2775 2830 7.655732 GGCCTTTGTATTTAACTGATTTTGTGT 59.344 33.333 0.00 0.00 0.00 3.72
2786 2841 7.642071 AACTGATTTTGTGTATGTCAAATGC 57.358 32.000 0.00 0.00 35.25 3.56
2787 2842 6.158598 ACTGATTTTGTGTATGTCAAATGCC 58.841 36.000 0.00 0.00 35.25 4.40
2788 2843 6.094193 TGATTTTGTGTATGTCAAATGCCA 57.906 33.333 0.00 0.00 35.25 4.92
2789 2844 6.519382 TGATTTTGTGTATGTCAAATGCCAA 58.481 32.000 0.00 0.00 35.25 4.52
2790 2845 6.423302 TGATTTTGTGTATGTCAAATGCCAAC 59.577 34.615 0.00 0.00 35.25 3.77
2791 2846 4.926140 TTGTGTATGTCAAATGCCAACA 57.074 36.364 0.00 0.00 0.00 3.33
2796 2851 5.175491 GTGTATGTCAAATGCCAACAAGTTG 59.825 40.000 0.00 0.00 40.13 3.16
2799 2854 2.788786 GTCAAATGCCAACAAGTTGTCG 59.211 45.455 9.40 0.00 38.85 4.35
2800 2855 2.685388 TCAAATGCCAACAAGTTGTCGA 59.315 40.909 9.40 0.00 38.85 4.20
2801 2856 2.774439 AATGCCAACAAGTTGTCGAC 57.226 45.000 9.40 9.11 38.85 4.20
2802 2857 1.674359 ATGCCAACAAGTTGTCGACA 58.326 45.000 15.76 15.76 38.85 4.35
2803 2858 1.013596 TGCCAACAAGTTGTCGACAG 58.986 50.000 19.11 9.66 38.85 3.51
2804 2859 1.295792 GCCAACAAGTTGTCGACAGA 58.704 50.000 19.11 7.32 38.85 3.41
2805 2860 1.261619 GCCAACAAGTTGTCGACAGAG 59.738 52.381 19.11 11.98 38.85 3.35
2806 2861 1.867233 CCAACAAGTTGTCGACAGAGG 59.133 52.381 19.11 11.99 38.85 3.69
2807 2862 1.261619 CAACAAGTTGTCGACAGAGGC 59.738 52.381 19.11 10.39 35.92 4.70
2808 2863 0.464036 ACAAGTTGTCGACAGAGGCA 59.536 50.000 19.11 0.00 0.00 4.75
2809 2864 1.070758 ACAAGTTGTCGACAGAGGCAT 59.929 47.619 19.11 1.47 0.00 4.40
2810 2865 2.299013 ACAAGTTGTCGACAGAGGCATA 59.701 45.455 19.11 0.00 0.00 3.14
2811 2866 3.055819 ACAAGTTGTCGACAGAGGCATAT 60.056 43.478 19.11 0.00 0.00 1.78
2812 2867 3.444703 AGTTGTCGACAGAGGCATATC 57.555 47.619 19.11 2.72 0.00 1.63
2813 2868 2.760650 AGTTGTCGACAGAGGCATATCA 59.239 45.455 19.11 0.00 0.00 2.15
2814 2869 2.860735 GTTGTCGACAGAGGCATATCAC 59.139 50.000 19.11 6.15 0.00 3.06
2815 2870 2.099405 TGTCGACAGAGGCATATCACA 58.901 47.619 15.76 0.00 0.00 3.58
2816 2871 2.695147 TGTCGACAGAGGCATATCACAT 59.305 45.455 15.76 0.00 0.00 3.21
2817 2872 3.055591 GTCGACAGAGGCATATCACATG 58.944 50.000 11.55 0.00 0.00 3.21
2818 2873 1.797046 CGACAGAGGCATATCACATGC 59.203 52.381 0.55 0.55 43.85 4.06
2819 2874 2.547430 CGACAGAGGCATATCACATGCT 60.547 50.000 8.94 0.00 44.02 3.79
2820 2875 2.806818 GACAGAGGCATATCACATGCTG 59.193 50.000 8.94 2.96 44.02 4.41
2821 2876 1.535896 CAGAGGCATATCACATGCTGC 59.464 52.381 8.94 0.00 44.02 5.25
2822 2877 1.420514 AGAGGCATATCACATGCTGCT 59.579 47.619 8.94 4.40 44.02 4.24
2823 2878 1.535896 GAGGCATATCACATGCTGCTG 59.464 52.381 8.94 0.00 44.02 4.41
2824 2879 1.142262 AGGCATATCACATGCTGCTGA 59.858 47.619 8.94 0.00 44.02 4.26
2825 2880 1.535896 GGCATATCACATGCTGCTGAG 59.464 52.381 8.94 0.00 44.02 3.35
2826 2881 1.535896 GCATATCACATGCTGCTGAGG 59.464 52.381 0.00 0.00 41.52 3.86
2827 2882 2.809299 GCATATCACATGCTGCTGAGGA 60.809 50.000 0.00 1.81 41.52 3.71
2828 2883 3.473625 CATATCACATGCTGCTGAGGAA 58.526 45.455 0.00 0.00 0.00 3.36
2829 2884 1.747709 ATCACATGCTGCTGAGGAAC 58.252 50.000 0.00 0.00 0.00 3.62
2831 2886 0.803117 CACATGCTGCTGAGGAACTG 59.197 55.000 0.00 0.00 41.55 3.16
2832 2887 0.399454 ACATGCTGCTGAGGAACTGT 59.601 50.000 0.00 0.00 41.55 3.55
2833 2888 1.085091 CATGCTGCTGAGGAACTGTC 58.915 55.000 0.00 0.00 41.55 3.51
2834 2889 0.982704 ATGCTGCTGAGGAACTGTCT 59.017 50.000 0.00 0.00 41.55 3.41
2835 2890 0.761187 TGCTGCTGAGGAACTGTCTT 59.239 50.000 0.00 0.00 41.55 3.01
2836 2891 1.970640 TGCTGCTGAGGAACTGTCTTA 59.029 47.619 0.00 0.00 41.55 2.10
2837 2892 2.568956 TGCTGCTGAGGAACTGTCTTAT 59.431 45.455 0.00 0.00 41.55 1.73
2838 2893 3.008375 TGCTGCTGAGGAACTGTCTTATT 59.992 43.478 0.00 0.00 41.55 1.40
2839 2894 4.006319 GCTGCTGAGGAACTGTCTTATTT 58.994 43.478 0.00 0.00 41.55 1.40
2840 2895 4.457257 GCTGCTGAGGAACTGTCTTATTTT 59.543 41.667 0.00 0.00 41.55 1.82
2841 2896 5.048434 GCTGCTGAGGAACTGTCTTATTTTT 60.048 40.000 0.00 0.00 41.55 1.94
2860 2915 3.876309 TTTTAAGCCTGAGGGAACTGT 57.124 42.857 0.00 0.00 44.43 3.55
2861 2916 3.418684 TTTAAGCCTGAGGGAACTGTC 57.581 47.619 0.00 0.00 44.43 3.51
2862 2917 2.024176 TAAGCCTGAGGGAACTGTCA 57.976 50.000 0.00 0.00 44.43 3.58
2863 2918 0.689623 AAGCCTGAGGGAACTGTCAG 59.310 55.000 0.00 0.00 44.43 3.51
2881 2936 3.499918 GTCAGTTGTGTATGCAGAGCTTT 59.500 43.478 0.00 0.00 27.43 3.51
2897 2952 3.087781 AGCTTTGGAAAGGAGAATCTGC 58.912 45.455 0.00 0.00 36.53 4.26
2949 3004 4.523083 TGGGAAACTGAAGTGTATATGCC 58.477 43.478 0.00 0.00 0.00 4.40
2974 3030 6.012658 TGTGGAAACTATTTTGTGAGCATC 57.987 37.500 0.00 0.00 0.00 3.91
2999 3055 6.034150 CGCTTTGACGTGTACATTACATCTTA 59.966 38.462 0.00 0.00 41.34 2.10
3027 3085 9.705290 AACATTTGGTGTGAGTTTTATATTTCC 57.295 29.630 0.00 0.00 41.14 3.13
3034 3096 7.807907 GGTGTGAGTTTTATATTTCCTTGTGTG 59.192 37.037 0.00 0.00 0.00 3.82
3036 3098 8.908903 TGTGAGTTTTATATTTCCTTGTGTGTT 58.091 29.630 0.00 0.00 0.00 3.32
3046 3108 2.165437 TCCTTGTGTGTTTCTTGTTGGC 59.835 45.455 0.00 0.00 0.00 4.52
3049 3111 1.895798 TGTGTGTTTCTTGTTGGCCAA 59.104 42.857 16.05 16.05 0.00 4.52
3063 3125 6.472686 TGTTGGCCAAGTACTGTTAAAATT 57.527 33.333 21.21 0.00 0.00 1.82
3072 3134 7.903431 CCAAGTACTGTTAAAATTATCGACAGC 59.097 37.037 0.00 0.00 40.95 4.40
3078 3140 5.005971 TGTTAAAATTATCGACAGCGGTAGC 59.994 40.000 0.00 0.00 45.58 3.58
3114 3176 7.366847 AGCCTATCAGCTTATCTTCTGTTTA 57.633 36.000 0.00 0.00 41.41 2.01
3116 3178 7.070571 AGCCTATCAGCTTATCTTCTGTTTAGT 59.929 37.037 0.00 0.00 41.41 2.24
3119 3181 9.685828 CTATCAGCTTATCTTCTGTTTAGTACC 57.314 37.037 0.00 0.00 0.00 3.34
3126 3188 8.660295 TTATCTTCTGTTTAGTACCTGGAAGA 57.340 34.615 0.00 0.00 38.70 2.87
3133 3195 1.742308 AGTACCTGGAAGAAAGGCCA 58.258 50.000 5.01 0.00 38.48 5.36
3149 3211 1.886542 GGCCAGTGGTTTCGAAATCTT 59.113 47.619 21.13 7.69 0.00 2.40
3158 3220 7.913297 CAGTGGTTTCGAAATCTTTAACTTGAA 59.087 33.333 21.13 0.00 0.00 2.69
3159 3221 8.129211 AGTGGTTTCGAAATCTTTAACTTGAAG 58.871 33.333 21.13 0.00 0.00 3.02
3183 3245 3.625853 TCGAATGGGTTAATGCATTGGA 58.374 40.909 22.27 7.68 0.00 3.53
3186 3248 4.097741 CGAATGGGTTAATGCATTGGAAGA 59.902 41.667 22.27 0.00 0.00 2.87
3193 3255 6.772716 GGGTTAATGCATTGGAAGATTAGAGA 59.227 38.462 22.27 0.00 0.00 3.10
3194 3256 7.285401 GGGTTAATGCATTGGAAGATTAGAGAA 59.715 37.037 22.27 0.25 0.00 2.87
3195 3257 8.348507 GGTTAATGCATTGGAAGATTAGAGAAG 58.651 37.037 22.27 0.00 0.00 2.85
3202 3591 2.869192 GGAAGATTAGAGAAGCCTTGCG 59.131 50.000 0.00 0.00 0.00 4.85
3214 3603 3.343941 AGCCTTGCGTCAACCTTATTA 57.656 42.857 0.00 0.00 0.00 0.98
3215 3604 3.007635 AGCCTTGCGTCAACCTTATTAC 58.992 45.455 0.00 0.00 0.00 1.89
3216 3605 3.007635 GCCTTGCGTCAACCTTATTACT 58.992 45.455 0.00 0.00 0.00 2.24
3218 3607 3.621715 CCTTGCGTCAACCTTATTACTCC 59.378 47.826 0.00 0.00 0.00 3.85
3219 3608 3.255969 TGCGTCAACCTTATTACTCCC 57.744 47.619 0.00 0.00 0.00 4.30
3220 3609 2.835764 TGCGTCAACCTTATTACTCCCT 59.164 45.455 0.00 0.00 0.00 4.20
3221 3610 3.118884 TGCGTCAACCTTATTACTCCCTC 60.119 47.826 0.00 0.00 0.00 4.30
3222 3611 3.740452 GCGTCAACCTTATTACTCCCTCC 60.740 52.174 0.00 0.00 0.00 4.30
3223 3612 3.490419 CGTCAACCTTATTACTCCCTCCG 60.490 52.174 0.00 0.00 0.00 4.63
3224 3613 3.450096 GTCAACCTTATTACTCCCTCCGT 59.550 47.826 0.00 0.00 0.00 4.69
3225 3614 4.081254 GTCAACCTTATTACTCCCTCCGTT 60.081 45.833 0.00 0.00 0.00 4.44
3228 3617 2.035576 CCTTATTACTCCCTCCGTTCGG 59.964 54.545 4.74 4.74 0.00 4.30
3229 3618 2.734755 TATTACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
3230 3619 1.856629 ATTACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.04 33.41 4.30
3232 3621 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3234 3623 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3237 3626 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3238 3627 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3239 3628 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3240 3629 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
3241 3630 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3242 3631 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
3243 3632 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
3247 3636 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
3249 3638 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
3251 3640 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
3252 3641 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
3253 3642 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
3254 3643 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
3255 3644 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
3256 3645 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
3257 3646 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
3258 3647 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
3259 3648 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
3260 3649 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
3261 3650 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
3262 3651 7.233553 TGTCTCGGAAATGGATGTATCTAGAAT 59.766 37.037 0.00 0.00 0.00 2.40
3263 3652 8.740906 GTCTCGGAAATGGATGTATCTAGAATA 58.259 37.037 0.00 0.00 0.00 1.75
3264 3653 8.740906 TCTCGGAAATGGATGTATCTAGAATAC 58.259 37.037 0.00 1.22 0.00 1.89
3265 3654 8.417273 TCGGAAATGGATGTATCTAGAATACA 57.583 34.615 13.76 13.76 38.66 2.29
3266 3655 8.866093 TCGGAAATGGATGTATCTAGAATACAA 58.134 33.333 14.78 4.48 37.93 2.41
3267 3656 9.144747 CGGAAATGGATGTATCTAGAATACAAG 57.855 37.037 14.78 0.00 37.93 3.16
3280 3669 9.627395 ATCTAGAATACAAGTAATTCCGAATCG 57.373 33.333 0.00 0.00 0.00 3.34
3322 3711 3.819337 AGAAACAGACTAGCAGTACGACA 59.181 43.478 0.00 0.00 0.00 4.35
3405 3795 4.380841 TCATCCGTAACTGTGGACATAC 57.619 45.455 0.00 0.00 37.02 2.39
3464 3854 5.185056 GCTGGGTACAATGTACAAATCCTTT 59.815 40.000 23.04 0.00 0.00 3.11
3469 3859 6.866248 GGTACAATGTACAAATCCTTTGGTTG 59.134 38.462 23.04 0.00 44.81 3.77
3471 3861 7.589958 ACAATGTACAAATCCTTTGGTTGTA 57.410 32.000 0.00 0.00 44.81 2.41
3501 3891 2.281761 ACAGGGCAGCAAACGGAG 60.282 61.111 0.00 0.00 0.00 4.63
3517 3907 0.179034 GGAGTGCCTGGCTGGATAAG 60.179 60.000 21.03 0.00 38.35 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.809013 GGGATGGTGGTGGCCGAT 61.809 66.667 0.00 0.00 0.00 4.18
509 516 1.277557 AGAACTAGTGAGGCAAGCCAG 59.722 52.381 14.40 3.85 38.92 4.85
521 528 1.549170 CCCACCAAGCGTAGAACTAGT 59.451 52.381 0.00 0.00 0.00 2.57
531 538 1.001815 CACAACTAAACCCACCAAGCG 60.002 52.381 0.00 0.00 0.00 4.68
640 649 6.402222 AGAAAGCGAATTGAGTACAGAAGAT 58.598 36.000 0.00 0.00 0.00 2.40
643 653 6.223852 AGAAGAAAGCGAATTGAGTACAGAA 58.776 36.000 0.00 0.00 0.00 3.02
697 707 2.159827 GGTCATTGTCTTTCTCGCGAAC 60.160 50.000 11.33 5.47 0.00 3.95
720 730 9.797556 CGGGGATTCTTTAGGTTAAATTAAAAG 57.202 33.333 0.00 0.00 0.00 2.27
721 731 8.751242 CCGGGGATTCTTTAGGTTAAATTAAAA 58.249 33.333 0.00 0.00 0.00 1.52
722 732 8.114743 TCCGGGGATTCTTTAGGTTAAATTAAA 58.885 33.333 0.00 0.00 0.00 1.52
723 733 7.641249 TCCGGGGATTCTTTAGGTTAAATTAA 58.359 34.615 0.00 0.00 0.00 1.40
724 734 7.210618 TCCGGGGATTCTTTAGGTTAAATTA 57.789 36.000 0.00 0.00 0.00 1.40
725 735 6.082228 TCCGGGGATTCTTTAGGTTAAATT 57.918 37.500 0.00 0.00 0.00 1.82
726 736 5.720486 TCCGGGGATTCTTTAGGTTAAAT 57.280 39.130 0.00 0.00 0.00 1.40
727 737 5.517620 TTCCGGGGATTCTTTAGGTTAAA 57.482 39.130 0.00 0.00 0.00 1.52
728 738 5.503002 CTTTCCGGGGATTCTTTAGGTTAA 58.497 41.667 0.00 0.00 0.00 2.01
729 739 4.627013 GCTTTCCGGGGATTCTTTAGGTTA 60.627 45.833 0.00 0.00 0.00 2.85
730 740 3.876550 GCTTTCCGGGGATTCTTTAGGTT 60.877 47.826 0.00 0.00 0.00 3.50
731 741 2.356844 GCTTTCCGGGGATTCTTTAGGT 60.357 50.000 0.00 0.00 0.00 3.08
732 742 2.298610 GCTTTCCGGGGATTCTTTAGG 58.701 52.381 0.00 0.00 0.00 2.69
733 743 2.298610 GGCTTTCCGGGGATTCTTTAG 58.701 52.381 0.00 0.00 0.00 1.85
734 744 2.430248 GGCTTTCCGGGGATTCTTTA 57.570 50.000 0.00 0.00 0.00 1.85
735 745 3.283020 GGCTTTCCGGGGATTCTTT 57.717 52.632 0.00 0.00 0.00 2.52
746 756 1.901464 TGGGCTGTTTCGGCTTTCC 60.901 57.895 0.66 0.00 35.82 3.13
747 757 1.285950 GTGGGCTGTTTCGGCTTTC 59.714 57.895 0.66 0.00 35.82 2.62
748 758 0.827507 ATGTGGGCTGTTTCGGCTTT 60.828 50.000 0.66 0.00 35.82 3.51
749 759 1.228552 ATGTGGGCTGTTTCGGCTT 60.229 52.632 0.66 0.00 35.82 4.35
750 760 1.973281 CATGTGGGCTGTTTCGGCT 60.973 57.895 0.66 0.00 35.82 5.52
751 761 1.971167 TCATGTGGGCTGTTTCGGC 60.971 57.895 0.00 0.00 34.56 5.54
752 762 1.586154 GGTCATGTGGGCTGTTTCGG 61.586 60.000 0.00 0.00 0.00 4.30
753 763 1.875963 GGTCATGTGGGCTGTTTCG 59.124 57.895 0.00 0.00 0.00 3.46
754 764 0.605319 TCGGTCATGTGGGCTGTTTC 60.605 55.000 0.00 0.00 0.00 2.78
755 765 0.179004 TTCGGTCATGTGGGCTGTTT 60.179 50.000 0.00 0.00 0.00 2.83
756 766 0.179004 TTTCGGTCATGTGGGCTGTT 60.179 50.000 0.00 0.00 0.00 3.16
757 767 0.179004 TTTTCGGTCATGTGGGCTGT 60.179 50.000 0.00 0.00 0.00 4.40
758 768 1.133025 GATTTTCGGTCATGTGGGCTG 59.867 52.381 0.00 0.00 0.00 4.85
759 769 1.271871 TGATTTTCGGTCATGTGGGCT 60.272 47.619 0.00 0.00 0.00 5.19
760 770 1.173043 TGATTTTCGGTCATGTGGGC 58.827 50.000 0.00 0.00 0.00 5.36
761 771 2.819608 AGTTGATTTTCGGTCATGTGGG 59.180 45.455 0.00 0.00 0.00 4.61
762 772 3.424829 CGAGTTGATTTTCGGTCATGTGG 60.425 47.826 0.00 0.00 33.39 4.17
763 773 3.736213 CGAGTTGATTTTCGGTCATGTG 58.264 45.455 0.00 0.00 33.39 3.21
771 781 1.423845 CGGCCCGAGTTGATTTTCG 59.576 57.895 0.00 0.00 36.62 3.46
772 782 0.958876 ACCGGCCCGAGTTGATTTTC 60.959 55.000 3.71 0.00 0.00 2.29
773 783 0.958876 GACCGGCCCGAGTTGATTTT 60.959 55.000 3.71 0.00 0.00 1.82
774 784 1.376812 GACCGGCCCGAGTTGATTT 60.377 57.895 3.71 0.00 0.00 2.17
775 785 2.267961 GACCGGCCCGAGTTGATT 59.732 61.111 3.71 0.00 0.00 2.57
776 786 4.143333 CGACCGGCCCGAGTTGAT 62.143 66.667 3.71 0.00 0.00 2.57
788 798 4.524318 ATTAGCACCGCCCGACCG 62.524 66.667 0.00 0.00 0.00 4.79
789 799 2.588034 GATTAGCACCGCCCGACC 60.588 66.667 0.00 0.00 0.00 4.79
790 800 2.588034 GGATTAGCACCGCCCGAC 60.588 66.667 0.00 0.00 0.00 4.79
791 801 3.857038 GGGATTAGCACCGCCCGA 61.857 66.667 0.00 0.00 0.00 5.14
792 802 4.929707 GGGGATTAGCACCGCCCG 62.930 72.222 0.00 0.00 41.63 6.13
797 807 2.808906 ACAGAAAGGGGATTAGCACC 57.191 50.000 0.00 0.00 41.99 5.01
798 808 3.017442 GGAACAGAAAGGGGATTAGCAC 58.983 50.000 0.00 0.00 0.00 4.40
799 809 2.025321 GGGAACAGAAAGGGGATTAGCA 60.025 50.000 0.00 0.00 0.00 3.49
800 810 2.656002 GGGAACAGAAAGGGGATTAGC 58.344 52.381 0.00 0.00 0.00 3.09
801 811 2.421529 CGGGGAACAGAAAGGGGATTAG 60.422 54.545 0.00 0.00 0.00 1.73
802 812 1.562475 CGGGGAACAGAAAGGGGATTA 59.438 52.381 0.00 0.00 0.00 1.75
803 813 0.331616 CGGGGAACAGAAAGGGGATT 59.668 55.000 0.00 0.00 0.00 3.01
804 814 0.845102 ACGGGGAACAGAAAGGGGAT 60.845 55.000 0.00 0.00 0.00 3.85
805 815 1.462627 ACGGGGAACAGAAAGGGGA 60.463 57.895 0.00 0.00 0.00 4.81
806 816 1.002502 GACGGGGAACAGAAAGGGG 60.003 63.158 0.00 0.00 0.00 4.79
807 817 0.109723 TTGACGGGGAACAGAAAGGG 59.890 55.000 0.00 0.00 0.00 3.95
808 818 1.975660 TTTGACGGGGAACAGAAAGG 58.024 50.000 0.00 0.00 0.00 3.11
831 841 4.794278 ACAACCGAACAGAAAGGTTTTT 57.206 36.364 0.00 0.00 45.04 1.94
832 842 4.794278 AACAACCGAACAGAAAGGTTTT 57.206 36.364 0.00 0.00 45.04 2.43
833 843 4.794278 AAACAACCGAACAGAAAGGTTT 57.206 36.364 0.00 0.00 45.04 3.27
835 845 5.358725 ACAATAAACAACCGAACAGAAAGGT 59.641 36.000 0.00 0.00 40.50 3.50
836 846 5.827666 ACAATAAACAACCGAACAGAAAGG 58.172 37.500 0.00 0.00 0.00 3.11
837 847 6.291585 GCAACAATAAACAACCGAACAGAAAG 60.292 38.462 0.00 0.00 0.00 2.62
838 848 5.517054 GCAACAATAAACAACCGAACAGAAA 59.483 36.000 0.00 0.00 0.00 2.52
839 849 5.038033 GCAACAATAAACAACCGAACAGAA 58.962 37.500 0.00 0.00 0.00 3.02
840 850 4.602995 GCAACAATAAACAACCGAACAGA 58.397 39.130 0.00 0.00 0.00 3.41
841 851 3.420576 CGCAACAATAAACAACCGAACAG 59.579 43.478 0.00 0.00 0.00 3.16
874 884 1.376424 CACGACTGATGCCTGCCTT 60.376 57.895 0.00 0.00 0.00 4.35
1020 1054 1.301677 CCTCGTCTGGCTTTGCTTCC 61.302 60.000 0.00 0.00 0.00 3.46
1326 1371 5.386958 TTCAGTACTTAGTTCGCAGATGT 57.613 39.130 0.00 0.00 35.04 3.06
1344 1389 2.222819 GCTTCACGCCGAGTAATTTCAG 60.223 50.000 0.00 0.00 0.00 3.02
1346 1391 2.000447 AGCTTCACGCCGAGTAATTTC 59.000 47.619 0.00 0.00 40.39 2.17
1450 1499 1.067295 TGCCCTGATCTTTCACCACT 58.933 50.000 0.00 0.00 0.00 4.00
1473 1522 9.965902 AGAAGGAACATCTTTACATACTTCAAT 57.034 29.630 0.00 0.00 29.18 2.57
1474 1523 9.436957 GAGAAGGAACATCTTTACATACTTCAA 57.563 33.333 0.00 0.00 36.11 2.69
1475 1524 7.759886 CGAGAAGGAACATCTTTACATACTTCA 59.240 37.037 0.00 0.00 36.11 3.02
1477 1526 7.042335 CCGAGAAGGAACATCTTTACATACTT 58.958 38.462 0.00 0.00 45.00 2.24
1486 1535 1.204941 CGGACCGAGAAGGAACATCTT 59.795 52.381 8.64 0.00 45.00 2.40
1491 1540 1.457346 TCTACGGACCGAGAAGGAAC 58.543 55.000 23.38 0.00 45.00 3.62
1504 1553 5.235186 CCTCAATTGCTGTCTATTTCTACGG 59.765 44.000 0.00 0.00 0.00 4.02
1505 1554 5.812642 ACCTCAATTGCTGTCTATTTCTACG 59.187 40.000 0.00 0.00 0.00 3.51
1506 1555 6.258947 GGACCTCAATTGCTGTCTATTTCTAC 59.741 42.308 19.82 4.60 0.00 2.59
1507 1556 6.349300 GGACCTCAATTGCTGTCTATTTCTA 58.651 40.000 19.82 0.00 0.00 2.10
1513 1562 2.501723 GAGGGACCTCAATTGCTGTCTA 59.498 50.000 19.82 0.00 42.31 2.59
1531 1580 1.140852 TGGACCAACAGTTGACAGAGG 59.859 52.381 15.36 0.00 0.00 3.69
1536 1585 3.003689 CACTGAATGGACCAACAGTTGAC 59.996 47.826 25.23 8.18 40.84 3.18
1579 1628 3.523547 CCACCCATAAACGTATCGACAA 58.476 45.455 0.00 0.00 0.00 3.18
1586 1636 1.003349 CCACACCCACCCATAAACGTA 59.997 52.381 0.00 0.00 0.00 3.57
1588 1638 0.250989 ACCACACCCACCCATAAACG 60.251 55.000 0.00 0.00 0.00 3.60
1626 1676 3.260475 TCATTGTATTCGGTGGACAGG 57.740 47.619 0.00 0.00 0.00 4.00
1789 1839 1.310933 CCTCTTGCACTCACATGGCC 61.311 60.000 0.00 0.00 0.00 5.36
1817 1867 3.658757 AAATGCTTGTTATTGCCGTGT 57.341 38.095 0.00 0.00 0.00 4.49
1847 1897 7.104043 TGATAAGAAATGAAAGCCAATCAGG 57.896 36.000 0.00 0.00 41.84 3.86
1878 1928 1.623811 CCTACATTATGGGACGGAGGG 59.376 57.143 0.00 0.00 0.00 4.30
1879 1929 2.605257 TCCTACATTATGGGACGGAGG 58.395 52.381 0.00 0.00 31.72 4.30
1926 1976 4.150451 CGTCCCGTAATGTAAGACGTTTTT 59.850 41.667 0.00 0.00 43.89 1.94
1927 1977 3.674753 CGTCCCGTAATGTAAGACGTTTT 59.325 43.478 0.00 0.00 43.89 2.43
1928 1978 3.244976 CGTCCCGTAATGTAAGACGTTT 58.755 45.455 2.88 0.00 43.89 3.60
1929 1979 2.415893 CCGTCCCGTAATGTAAGACGTT 60.416 50.000 9.63 0.00 46.62 3.99
1930 1980 1.133025 CCGTCCCGTAATGTAAGACGT 59.867 52.381 9.63 0.00 46.62 4.34
1932 1982 2.223665 CCTCCGTCCCGTAATGTAAGAC 60.224 54.545 0.00 0.00 0.00 3.01
1933 1983 2.026641 CCTCCGTCCCGTAATGTAAGA 58.973 52.381 0.00 0.00 0.00 2.10
1934 1984 1.068127 CCCTCCGTCCCGTAATGTAAG 59.932 57.143 0.00 0.00 0.00 2.34
1935 1985 1.113788 CCCTCCGTCCCGTAATGTAA 58.886 55.000 0.00 0.00 0.00 2.41
1936 1986 0.258484 TCCCTCCGTCCCGTAATGTA 59.742 55.000 0.00 0.00 0.00 2.29
1937 1987 1.000739 TCCCTCCGTCCCGTAATGT 59.999 57.895 0.00 0.00 0.00 2.71
1938 1988 1.041447 ACTCCCTCCGTCCCGTAATG 61.041 60.000 0.00 0.00 0.00 1.90
1939 1989 0.552848 TACTCCCTCCGTCCCGTAAT 59.447 55.000 0.00 0.00 0.00 1.89
1940 1990 0.331278 TTACTCCCTCCGTCCCGTAA 59.669 55.000 0.00 0.00 0.00 3.18
1941 1991 0.552848 ATTACTCCCTCCGTCCCGTA 59.447 55.000 0.00 0.00 0.00 4.02
1942 1992 0.552848 TATTACTCCCTCCGTCCCGT 59.447 55.000 0.00 0.00 0.00 5.28
1943 1993 1.696063 TTATTACTCCCTCCGTCCCG 58.304 55.000 0.00 0.00 0.00 5.14
1944 1994 3.236896 TGATTATTACTCCCTCCGTCCC 58.763 50.000 0.00 0.00 0.00 4.46
1945 1995 3.896272 ACTGATTATTACTCCCTCCGTCC 59.104 47.826 0.00 0.00 0.00 4.79
1946 1996 6.433404 TCATACTGATTATTACTCCCTCCGTC 59.567 42.308 0.00 0.00 0.00 4.79
1947 1997 6.312529 TCATACTGATTATTACTCCCTCCGT 58.687 40.000 0.00 0.00 0.00 4.69
1948 1998 6.835819 TCATACTGATTATTACTCCCTCCG 57.164 41.667 0.00 0.00 0.00 4.63
1949 1999 9.847224 TTTTTCATACTGATTATTACTCCCTCC 57.153 33.333 0.00 0.00 0.00 4.30
2012 2062 3.890756 TGTTGATGAGTGAAAGTGCCAAT 59.109 39.130 0.00 0.00 0.00 3.16
2083 2133 0.460284 AATAAGGTGGCGTCAGAGCG 60.460 55.000 0.00 0.00 38.18 5.03
2129 2179 4.712122 TTCTTTTTCCTGAACCACACAC 57.288 40.909 0.00 0.00 0.00 3.82
2189 2239 6.633500 TTGTTTGGATCAGTAAGAACAAGG 57.367 37.500 0.00 0.00 33.55 3.61
2372 2422 3.787001 AGCCCTACCAGCGCTTCC 61.787 66.667 7.50 0.00 34.64 3.46
2387 2437 2.802816 GACGGGTACATTGATCATCAGC 59.197 50.000 0.00 0.00 0.00 4.26
2435 2485 1.066002 CGAATTGCTACCCAATGCCTG 59.934 52.381 0.00 0.00 43.22 4.85
2447 2497 2.480759 GCCATCAATGCTTCGAATTGCT 60.481 45.455 10.33 0.00 35.43 3.91
2537 2587 0.976641 TGAGAACGCTGTCCAGGAAT 59.023 50.000 0.00 0.00 0.00 3.01
2615 2665 4.483090 GCCATTAGCTGTAGCCCC 57.517 61.111 0.00 0.00 43.38 5.80
2626 2680 5.393068 AAATCATGGAGGAGAAGCCATTA 57.607 39.130 0.00 0.00 42.03 1.90
2628 2682 3.967467 AAATCATGGAGGAGAAGCCAT 57.033 42.857 0.00 0.00 45.47 4.40
2641 2695 1.468985 TGGGCAACGGGTAAATCATG 58.531 50.000 0.00 0.00 37.60 3.07
2642 2696 2.452600 ATGGGCAACGGGTAAATCAT 57.547 45.000 0.00 0.00 37.60 2.45
2718 2772 6.290605 TGTCATGATTCTCACAAAGACTGAA 58.709 36.000 0.00 0.00 32.27 3.02
2740 2795 6.493458 AGTTAAATACAAAGGCCAATGACTGT 59.507 34.615 14.09 5.84 0.00 3.55
2741 2796 6.808212 CAGTTAAATACAAAGGCCAATGACTG 59.192 38.462 14.09 11.26 0.00 3.51
2742 2797 6.719370 TCAGTTAAATACAAAGGCCAATGACT 59.281 34.615 14.09 3.80 0.00 3.41
2743 2798 6.919721 TCAGTTAAATACAAAGGCCAATGAC 58.080 36.000 14.09 1.69 0.00 3.06
2744 2799 7.716799 ATCAGTTAAATACAAAGGCCAATGA 57.283 32.000 14.09 0.09 0.00 2.57
2746 2801 9.218440 CAAAATCAGTTAAATACAAAGGCCAAT 57.782 29.630 5.01 0.00 0.00 3.16
2748 2803 7.655328 CACAAAATCAGTTAAATACAAAGGCCA 59.345 33.333 5.01 0.00 0.00 5.36
2749 2804 7.655732 ACACAAAATCAGTTAAATACAAAGGCC 59.344 33.333 0.00 0.00 0.00 5.19
2750 2805 8.587952 ACACAAAATCAGTTAAATACAAAGGC 57.412 30.769 0.00 0.00 0.00 4.35
2760 2815 9.190858 GCATTTGACATACACAAAATCAGTTAA 57.809 29.630 0.00 0.00 39.95 2.01
2763 2818 6.158598 GGCATTTGACATACACAAAATCAGT 58.841 36.000 0.00 0.00 39.95 3.41
2764 2819 6.157904 TGGCATTTGACATACACAAAATCAG 58.842 36.000 0.00 0.00 39.95 2.90
2767 2822 6.286758 TGTTGGCATTTGACATACACAAAAT 58.713 32.000 0.00 0.00 39.95 1.82
2768 2823 5.664457 TGTTGGCATTTGACATACACAAAA 58.336 33.333 0.00 0.00 39.95 2.44
2770 2825 4.926140 TGTTGGCATTTGACATACACAA 57.074 36.364 0.00 0.00 30.06 3.33
2771 2826 4.340666 ACTTGTTGGCATTTGACATACACA 59.659 37.500 0.00 0.00 30.06 3.72
2772 2827 4.870363 ACTTGTTGGCATTTGACATACAC 58.130 39.130 0.00 0.00 30.06 2.90
2775 2830 5.527951 GACAACTTGTTGGCATTTGACATA 58.472 37.500 13.84 0.00 30.06 2.29
2777 2832 3.733380 CGACAACTTGTTGGCATTTGACA 60.733 43.478 18.02 0.00 0.00 3.58
2778 2833 2.788786 CGACAACTTGTTGGCATTTGAC 59.211 45.455 18.02 0.00 0.00 3.18
2779 2834 2.685388 TCGACAACTTGTTGGCATTTGA 59.315 40.909 18.02 5.55 32.62 2.69
2780 2835 2.788786 GTCGACAACTTGTTGGCATTTG 59.211 45.455 18.02 3.40 36.41 2.32
2781 2836 2.425312 TGTCGACAACTTGTTGGCATTT 59.575 40.909 17.62 0.00 41.11 2.32
2783 2838 1.603802 CTGTCGACAACTTGTTGGCAT 59.396 47.619 20.49 0.00 44.52 4.40
2784 2839 1.013596 CTGTCGACAACTTGTTGGCA 58.986 50.000 20.49 14.49 43.51 4.92
2785 2840 1.261619 CTCTGTCGACAACTTGTTGGC 59.738 52.381 20.49 13.06 36.91 4.52
2786 2841 1.867233 CCTCTGTCGACAACTTGTTGG 59.133 52.381 20.49 10.44 32.62 3.77
2787 2842 1.261619 GCCTCTGTCGACAACTTGTTG 59.738 52.381 20.49 11.44 33.03 3.33
2788 2843 1.134521 TGCCTCTGTCGACAACTTGTT 60.135 47.619 20.49 0.00 0.00 2.83
2789 2844 0.464036 TGCCTCTGTCGACAACTTGT 59.536 50.000 20.49 0.00 0.00 3.16
2790 2845 1.800805 ATGCCTCTGTCGACAACTTG 58.199 50.000 20.49 7.98 0.00 3.16
2791 2846 3.195610 TGATATGCCTCTGTCGACAACTT 59.804 43.478 20.49 9.80 0.00 2.66
2796 2851 2.871182 TGTGATATGCCTCTGTCGAC 57.129 50.000 9.11 9.11 0.00 4.20
2799 2854 2.806818 CAGCATGTGATATGCCTCTGTC 59.193 50.000 10.64 0.00 45.59 3.51
2800 2855 2.847441 CAGCATGTGATATGCCTCTGT 58.153 47.619 10.64 0.00 45.59 3.41
2801 2856 1.535896 GCAGCATGTGATATGCCTCTG 59.464 52.381 10.64 4.22 45.59 3.35
2802 2857 1.420514 AGCAGCATGTGATATGCCTCT 59.579 47.619 10.64 5.37 45.59 3.69
2803 2858 1.535896 CAGCAGCATGTGATATGCCTC 59.464 52.381 10.64 3.12 45.59 4.70
2804 2859 1.142262 TCAGCAGCATGTGATATGCCT 59.858 47.619 10.64 0.00 45.59 4.75
2805 2860 1.535896 CTCAGCAGCATGTGATATGCC 59.464 52.381 10.64 0.00 45.59 4.40
2806 2861 1.535896 CCTCAGCAGCATGTGATATGC 59.464 52.381 6.00 6.00 44.85 3.14
2807 2862 3.121738 TCCTCAGCAGCATGTGATATG 57.878 47.619 0.00 0.00 39.31 1.78
2808 2863 3.136077 AGTTCCTCAGCAGCATGTGATAT 59.864 43.478 0.00 0.00 39.31 1.63
2809 2864 2.502947 AGTTCCTCAGCAGCATGTGATA 59.497 45.455 0.00 0.00 39.31 2.15
2810 2865 1.281287 AGTTCCTCAGCAGCATGTGAT 59.719 47.619 0.00 0.00 39.31 3.06
2811 2866 0.689055 AGTTCCTCAGCAGCATGTGA 59.311 50.000 0.00 0.00 39.31 3.58
2812 2867 0.803117 CAGTTCCTCAGCAGCATGTG 59.197 55.000 0.00 0.00 39.31 3.21
2813 2868 0.399454 ACAGTTCCTCAGCAGCATGT 59.601 50.000 0.00 0.00 39.31 3.21
2814 2869 1.085091 GACAGTTCCTCAGCAGCATG 58.915 55.000 0.00 0.00 40.87 4.06
2815 2870 0.982704 AGACAGTTCCTCAGCAGCAT 59.017 50.000 0.00 0.00 0.00 3.79
2816 2871 0.761187 AAGACAGTTCCTCAGCAGCA 59.239 50.000 0.00 0.00 0.00 4.41
2817 2872 2.751166 TAAGACAGTTCCTCAGCAGC 57.249 50.000 0.00 0.00 0.00 5.25
2818 2873 6.566197 AAAAATAAGACAGTTCCTCAGCAG 57.434 37.500 0.00 0.00 0.00 4.24
2839 2894 4.142038 GACAGTTCCCTCAGGCTTAAAAA 58.858 43.478 0.00 0.00 0.00 1.94
2840 2895 3.137544 TGACAGTTCCCTCAGGCTTAAAA 59.862 43.478 0.00 0.00 0.00 1.52
2841 2896 2.708861 TGACAGTTCCCTCAGGCTTAAA 59.291 45.455 0.00 0.00 0.00 1.52
2842 2897 2.303022 CTGACAGTTCCCTCAGGCTTAA 59.697 50.000 0.00 0.00 31.80 1.85
2843 2898 1.902508 CTGACAGTTCCCTCAGGCTTA 59.097 52.381 0.00 0.00 31.80 3.09
2844 2899 0.689623 CTGACAGTTCCCTCAGGCTT 59.310 55.000 0.00 0.00 31.80 4.35
2845 2900 0.472734 ACTGACAGTTCCCTCAGGCT 60.473 55.000 1.07 0.00 38.63 4.58
2846 2901 0.398318 AACTGACAGTTCCCTCAGGC 59.602 55.000 15.23 0.00 38.63 4.85
2847 2902 1.417890 ACAACTGACAGTTCCCTCAGG 59.582 52.381 18.02 7.82 36.03 3.86
2848 2903 2.158900 ACACAACTGACAGTTCCCTCAG 60.159 50.000 18.02 8.51 36.03 3.35
2849 2904 1.837439 ACACAACTGACAGTTCCCTCA 59.163 47.619 18.02 0.00 36.03 3.86
2850 2905 2.622064 ACACAACTGACAGTTCCCTC 57.378 50.000 18.02 0.00 36.03 4.30
2851 2906 3.807209 GCATACACAACTGACAGTTCCCT 60.807 47.826 18.02 5.75 36.03 4.20
2852 2907 2.484264 GCATACACAACTGACAGTTCCC 59.516 50.000 18.02 0.00 36.03 3.97
2853 2908 3.138304 TGCATACACAACTGACAGTTCC 58.862 45.455 18.02 2.29 36.03 3.62
2854 2909 4.058124 TCTGCATACACAACTGACAGTTC 58.942 43.478 18.02 5.99 36.03 3.01
2855 2910 4.060900 CTCTGCATACACAACTGACAGTT 58.939 43.478 15.23 15.23 39.39 3.16
2856 2911 3.657634 CTCTGCATACACAACTGACAGT 58.342 45.455 1.07 1.07 0.00 3.55
2857 2912 2.414481 GCTCTGCATACACAACTGACAG 59.586 50.000 0.00 0.00 0.00 3.51
2858 2913 2.037641 AGCTCTGCATACACAACTGACA 59.962 45.455 0.00 0.00 0.00 3.58
2859 2914 2.693069 AGCTCTGCATACACAACTGAC 58.307 47.619 0.00 0.00 0.00 3.51
2860 2915 3.407424 AAGCTCTGCATACACAACTGA 57.593 42.857 0.00 0.00 0.00 3.41
2861 2916 3.365666 CCAAAGCTCTGCATACACAACTG 60.366 47.826 0.00 0.00 0.00 3.16
2862 2917 2.816087 CCAAAGCTCTGCATACACAACT 59.184 45.455 0.00 0.00 0.00 3.16
2863 2918 2.813754 TCCAAAGCTCTGCATACACAAC 59.186 45.455 0.00 0.00 0.00 3.32
2897 2952 1.815421 GGCACATACACTGCCGGAG 60.815 63.158 5.05 1.84 44.78 4.63
2924 2979 5.880332 GCATATACACTTCAGTTTCCCAGAA 59.120 40.000 0.00 0.00 0.00 3.02
2926 2981 4.576463 GGCATATACACTTCAGTTTCCCAG 59.424 45.833 0.00 0.00 0.00 4.45
2927 2982 4.523083 GGCATATACACTTCAGTTTCCCA 58.477 43.478 0.00 0.00 0.00 4.37
2928 2983 3.883489 GGGCATATACACTTCAGTTTCCC 59.117 47.826 0.00 0.00 0.00 3.97
2929 2984 4.576463 CAGGGCATATACACTTCAGTTTCC 59.424 45.833 0.00 0.00 0.00 3.13
2930 2985 5.065218 CACAGGGCATATACACTTCAGTTTC 59.935 44.000 0.00 0.00 0.00 2.78
2931 2986 4.943705 CACAGGGCATATACACTTCAGTTT 59.056 41.667 0.00 0.00 0.00 2.66
2949 3004 4.278170 TGCTCACAAAATAGTTTCCACAGG 59.722 41.667 0.00 0.00 0.00 4.00
2974 3030 4.326278 AGATGTAATGTACACGTCAAAGCG 59.674 41.667 0.00 0.00 42.23 4.68
3002 3058 9.088987 AGGAAATATAAAACTCACACCAAATGT 57.911 29.630 0.00 0.00 44.81 2.71
3022 3080 5.418676 CCAACAAGAAACACACAAGGAAAT 58.581 37.500 0.00 0.00 0.00 2.17
3024 3082 3.367910 GCCAACAAGAAACACACAAGGAA 60.368 43.478 0.00 0.00 0.00 3.36
3026 3084 2.539476 GCCAACAAGAAACACACAAGG 58.461 47.619 0.00 0.00 0.00 3.61
3027 3085 2.094286 TGGCCAACAAGAAACACACAAG 60.094 45.455 0.61 0.00 0.00 3.16
3039 3101 5.916661 TTTTAACAGTACTTGGCCAACAA 57.083 34.783 16.05 1.89 37.55 2.83
3046 3108 7.903431 GCTGTCGATAATTTTAACAGTACTTGG 59.097 37.037 0.00 0.00 39.56 3.61
3049 3111 6.255020 CCGCTGTCGATAATTTTAACAGTACT 59.745 38.462 10.51 0.00 39.56 2.73
3072 3134 0.370273 CTTAAACAGCAGCGCTACCG 59.630 55.000 10.99 0.00 36.40 4.02
3097 3159 6.758886 CCAGGTACTAAACAGAAGATAAGCTG 59.241 42.308 0.00 0.00 36.02 4.24
3101 3163 8.660295 TCTTCCAGGTACTAAACAGAAGATAA 57.340 34.615 0.00 0.00 36.31 1.75
3102 3164 8.660295 TTCTTCCAGGTACTAAACAGAAGATA 57.340 34.615 0.00 0.00 38.75 1.98
3103 3165 7.554959 TTCTTCCAGGTACTAAACAGAAGAT 57.445 36.000 0.00 0.00 38.75 2.40
3111 3173 3.653836 TGGCCTTTCTTCCAGGTACTAAA 59.346 43.478 3.32 0.00 36.02 1.85
3114 3176 1.630878 CTGGCCTTTCTTCCAGGTACT 59.369 52.381 3.32 0.00 44.64 2.73
3126 3188 1.770294 TTTCGAAACCACTGGCCTTT 58.230 45.000 6.47 0.00 0.00 3.11
3133 3195 7.562454 TCAAGTTAAAGATTTCGAAACCACT 57.438 32.000 13.81 10.15 0.00 4.00
3136 3198 9.678941 ATTCTTCAAGTTAAAGATTTCGAAACC 57.321 29.630 13.81 2.58 33.01 3.27
3149 3211 8.624367 TTAACCCATTCGATTCTTCAAGTTAA 57.376 30.769 0.00 0.00 0.00 2.01
3158 3220 5.221303 CCAATGCATTAACCCATTCGATTCT 60.221 40.000 12.53 0.00 29.71 2.40
3159 3221 4.984161 CCAATGCATTAACCCATTCGATTC 59.016 41.667 12.53 0.00 29.71 2.52
3183 3245 3.618690 ACGCAAGGCTTCTCTAATCTT 57.381 42.857 0.00 0.00 46.39 2.40
3202 3591 3.450096 ACGGAGGGAGTAATAAGGTTGAC 59.550 47.826 0.00 0.00 0.00 3.18
3214 3603 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
3215 3604 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3216 3605 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3218 3607 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3219 3608 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
3220 3609 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
3221 3610 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
3222 3611 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
3223 3612 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
3224 3613 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
3225 3614 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
3228 3617 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
3229 3618 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
3230 3619 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
3232 3621 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
3234 3623 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
3237 3626 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
3238 3627 7.782897 ATTCTAGATACATCCATTTCCGAGA 57.217 36.000 0.00 0.00 0.00 4.04
3239 3628 8.523658 TGTATTCTAGATACATCCATTTCCGAG 58.476 37.037 0.00 0.00 30.34 4.63
3240 3629 8.417273 TGTATTCTAGATACATCCATTTCCGA 57.583 34.615 0.00 0.00 30.34 4.55
3241 3630 9.144747 CTTGTATTCTAGATACATCCATTTCCG 57.855 37.037 12.73 0.00 34.83 4.30
3254 3643 9.627395 CGATTCGGAATTACTTGTATTCTAGAT 57.373 33.333 4.47 0.00 33.51 1.98
3274 3663 4.785511 ATTATGTACTCCCTCCGATTCG 57.214 45.455 0.00 0.00 0.00 3.34
3275 3664 7.229581 ACTAATTATGTACTCCCTCCGATTC 57.770 40.000 0.00 0.00 0.00 2.52
3276 3665 8.168725 TCTACTAATTATGTACTCCCTCCGATT 58.831 37.037 0.00 0.00 0.00 3.34
3277 3666 7.696981 TCTACTAATTATGTACTCCCTCCGAT 58.303 38.462 0.00 0.00 0.00 4.18
3278 3667 7.083062 TCTACTAATTATGTACTCCCTCCGA 57.917 40.000 0.00 0.00 0.00 4.55
3279 3668 7.756395 TTCTACTAATTATGTACTCCCTCCG 57.244 40.000 0.00 0.00 0.00 4.63
3280 3669 8.921205 TGTTTCTACTAATTATGTACTCCCTCC 58.079 37.037 0.00 0.00 0.00 4.30
3281 3670 9.968870 CTGTTTCTACTAATTATGTACTCCCTC 57.031 37.037 0.00 0.00 0.00 4.30
3282 3671 9.710818 TCTGTTTCTACTAATTATGTACTCCCT 57.289 33.333 0.00 0.00 0.00 4.20
3283 3672 9.747293 GTCTGTTTCTACTAATTATGTACTCCC 57.253 37.037 0.00 0.00 0.00 4.30
3357 3747 1.993369 GCCGCTTGTATGCAGTTCCC 61.993 60.000 0.00 0.00 0.00 3.97
3407 3797 2.688526 CTTGTGTGGCTTGCTGCACC 62.689 60.000 0.00 1.36 45.15 5.01
3464 3854 6.379133 CCCTGTCTACTGTTATACTACAACCA 59.621 42.308 0.00 0.00 0.00 3.67
3469 3859 5.507650 GCTGCCCTGTCTACTGTTATACTAC 60.508 48.000 0.00 0.00 0.00 2.73
3471 3861 3.385111 GCTGCCCTGTCTACTGTTATACT 59.615 47.826 0.00 0.00 0.00 2.12
3501 3891 3.833304 GCTTATCCAGCCAGGCAC 58.167 61.111 15.80 0.00 43.65 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.