Multiple sequence alignment - TraesCS4B01G213600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G213600 chr4B 100.000 4700 0 0 1 4700 452724349 452719650 0.000000e+00 8680
1 TraesCS4B01G213600 chr4B 81.481 621 76 16 3 594 608636831 608636221 1.530000e-129 473
2 TraesCS4B01G213600 chr4B 83.857 477 55 10 1 459 488140300 488140772 7.220000e-118 435
3 TraesCS4B01G213600 chr4D 96.319 1277 30 5 781 2052 367723597 367722333 0.000000e+00 2082
4 TraesCS4B01G213600 chr4D 86.919 818 70 16 2 789 367745795 367744985 0.000000e+00 883
5 TraesCS4B01G213600 chr4D 92.937 538 36 1 2079 2614 367722162 367721625 0.000000e+00 782
6 TraesCS4B01G213600 chr4D 86.585 492 50 13 2660 3145 367721536 367721055 3.220000e-146 529
7 TraesCS4B01G213600 chr4D 86.797 409 38 6 3538 3933 367720542 367720137 4.320000e-120 442
8 TraesCS4B01G213600 chr4D 87.568 370 24 11 4269 4627 367719533 367719175 4.380000e-110 409
9 TraesCS4B01G213600 chr4D 82.697 393 24 13 3965 4342 367719889 367719526 4.570000e-80 309
10 TraesCS4B01G213600 chr4D 87.736 106 10 3 3332 3437 469582364 469582262 2.300000e-23 121
11 TraesCS4B01G213600 chr4A 94.627 1247 48 9 801 2038 97528175 97529411 0.000000e+00 1914
12 TraesCS4B01G213600 chr4A 88.425 527 37 4 2088 2614 97529408 97529910 8.640000e-172 614
13 TraesCS4B01G213600 chr4A 82.712 671 78 18 2688 3343 97530154 97530801 3.180000e-156 562
14 TraesCS4B01G213600 chr4A 86.372 521 49 10 3424 3930 97530798 97531310 2.470000e-152 549
15 TraesCS4B01G213600 chr4A 86.245 269 14 15 4269 4524 97531968 97532226 2.160000e-68 270
16 TraesCS4B01G213600 chr4A 79.277 415 24 23 3963 4342 97531588 97531975 2.830000e-57 233
17 TraesCS4B01G213600 chr3D 87.603 605 69 5 1 599 355742944 355742340 0.000000e+00 697
18 TraesCS4B01G213600 chr3D 94.318 88 4 1 3340 3427 66523379 66523465 2.950000e-27 134
19 TraesCS4B01G213600 chr2D 83.740 615 78 12 1 594 607080783 607080170 3.180000e-156 562
20 TraesCS4B01G213600 chr2D 83.333 624 63 15 1 593 447684781 447684168 5.350000e-149 538
21 TraesCS4B01G213600 chr2D 80.285 492 83 11 114 594 318593712 318593224 4.470000e-95 359
22 TraesCS4B01G213600 chr2D 81.422 436 68 10 113 537 42555873 42555440 1.250000e-90 344
23 TraesCS4B01G213600 chr2D 93.333 90 5 1 3340 3429 382456024 382455936 1.060000e-26 132
24 TraesCS4B01G213600 chrUn 86.180 521 57 9 4 510 86834124 86834643 2.470000e-152 549
25 TraesCS4B01G213600 chr3B 81.759 614 91 9 1 594 627195783 627195171 1.170000e-135 494
26 TraesCS4B01G213600 chr3B 92.308 91 6 1 3340 3429 450376642 450376552 1.370000e-25 128
27 TraesCS4B01G213600 chr6D 78.773 603 99 17 7 583 378395158 378394559 1.230000e-100 377
28 TraesCS4B01G213600 chr6D 90.000 100 8 2 3340 3438 199210328 199210426 1.370000e-25 128
29 TraesCS4B01G213600 chr3A 78.696 460 87 7 27 478 490718603 490718147 3.560000e-76 296
30 TraesCS4B01G213600 chr7D 93.407 91 5 1 3336 3426 470204787 470204876 2.950000e-27 134
31 TraesCS4B01G213600 chr7B 91.667 96 7 1 3335 3430 8925271 8925177 1.060000e-26 132
32 TraesCS4B01G213600 chr1D 93.407 91 3 3 3340 3428 394271201 394271112 1.060000e-26 132
33 TraesCS4B01G213600 chr5B 89.899 99 8 2 3336 3433 264876298 264876395 4.940000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G213600 chr4B 452719650 452724349 4699 True 8680.000000 8680 100.000000 1 4700 1 chr4B.!!$R1 4699
1 TraesCS4B01G213600 chr4B 608636221 608636831 610 True 473.000000 473 81.481000 3 594 1 chr4B.!!$R2 591
2 TraesCS4B01G213600 chr4D 367744985 367745795 810 True 883.000000 883 86.919000 2 789 1 chr4D.!!$R1 787
3 TraesCS4B01G213600 chr4D 367719175 367723597 4422 True 758.833333 2082 88.817167 781 4627 6 chr4D.!!$R3 3846
4 TraesCS4B01G213600 chr4A 97528175 97532226 4051 False 690.333333 1914 86.276333 801 4524 6 chr4A.!!$F1 3723
5 TraesCS4B01G213600 chr3D 355742340 355742944 604 True 697.000000 697 87.603000 1 599 1 chr3D.!!$R1 598
6 TraesCS4B01G213600 chr2D 607080170 607080783 613 True 562.000000 562 83.740000 1 594 1 chr2D.!!$R5 593
7 TraesCS4B01G213600 chr2D 447684168 447684781 613 True 538.000000 538 83.333000 1 593 1 chr2D.!!$R4 592
8 TraesCS4B01G213600 chrUn 86834124 86834643 519 False 549.000000 549 86.180000 4 510 1 chrUn.!!$F1 506
9 TraesCS4B01G213600 chr3B 627195171 627195783 612 True 494.000000 494 81.759000 1 594 1 chr3B.!!$R2 593
10 TraesCS4B01G213600 chr6D 378394559 378395158 599 True 377.000000 377 78.773000 7 583 1 chr6D.!!$R1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 648 0.168128 GTTTTGATCCAAGCGGACGG 59.832 55.0 0.00 0.00 46.79 4.79 F
639 717 0.379669 GAGCGAGCATGACCCAATTG 59.620 55.0 0.00 0.00 0.00 2.32 F
1071 1159 0.467290 CCTCCTCCTTCCTCTCCTCG 60.467 65.0 0.00 0.00 0.00 4.63 F
2060 2258 0.692476 TCCCTCAGTCCCACAATGTG 59.308 55.0 6.37 6.37 0.00 3.21 F
3210 3657 0.166814 GCAAGTGAACGCATGGTCTC 59.833 55.0 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1807 0.530870 GCGTCCTGGGAGTTAGCATC 60.531 60.000 0.00 0.00 0.00 3.91 R
2616 2856 1.119684 TGCCACACAGTGTAGACAGT 58.880 50.000 5.69 0.00 0.00 3.55 R
2618 2858 1.484653 ACTTGCCACACAGTGTAGACA 59.515 47.619 5.69 2.06 0.00 3.41 R
3305 3761 0.456221 CGAGGAACTATGGCAGACGT 59.544 55.000 0.00 0.00 41.55 4.34 R
4656 5645 0.321919 AGCGCACCACAGATGTCATT 60.322 50.000 11.47 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 1.200483 GCGACGACATACATCCACAG 58.800 55.000 0.00 0.00 0.00 3.66
96 98 0.615331 ATCTGAAAAGCTGGCGGAGA 59.385 50.000 0.00 0.00 0.00 3.71
100 102 1.927608 GAAAAGCTGGCGGAGAAGGC 61.928 60.000 0.00 0.00 37.19 4.35
103 105 4.760047 GCTGGCGGAGAAGGCGAA 62.760 66.667 0.00 0.00 39.82 4.70
111 113 0.899019 GGAGAAGGCGAAGGAGAAGT 59.101 55.000 0.00 0.00 0.00 3.01
352 402 0.980754 TGACCCCACGCCTATGTCAT 60.981 55.000 0.00 0.00 31.45 3.06
362 412 2.479560 CGCCTATGTCATTGACAGTCGA 60.480 50.000 22.82 8.89 46.04 4.20
518 571 2.600731 GGAAATGGGATGGGCCGA 59.399 61.111 0.00 0.00 37.63 5.54
588 641 5.390251 CGTCATCTGTCTGTTTTGATCCAAG 60.390 44.000 0.00 0.00 0.00 3.61
595 648 0.168128 GTTTTGATCCAAGCGGACGG 59.832 55.000 0.00 0.00 46.79 4.79
639 717 0.379669 GAGCGAGCATGACCCAATTG 59.620 55.000 0.00 0.00 0.00 2.32
698 776 1.298859 GCAGGACCGCTGACGATTTT 61.299 55.000 0.00 0.00 43.93 1.82
710 788 5.794945 CGCTGACGATTTTTATGTGATTTGT 59.205 36.000 0.00 0.00 43.93 2.83
725 803 5.937540 TGTGATTTGTTATGTCCGATGTCTT 59.062 36.000 0.00 0.00 0.00 3.01
755 833 9.382275 GTATTGTAAATCCGGTTTAGTAGGAAA 57.618 33.333 0.00 0.00 37.62 3.13
757 835 7.008021 TGTAAATCCGGTTTAGTAGGAAACT 57.992 36.000 0.00 0.00 42.62 2.66
773 851 6.422776 AGGAAACTGTGTAATATTTCTGCG 57.577 37.500 0.00 0.00 41.13 5.18
877 957 4.083862 GACGGGGACACTCCTGCC 62.084 72.222 0.00 0.00 36.57 4.85
878 958 4.954118 ACGGGGACACTCCTGCCA 62.954 66.667 0.00 0.00 36.57 4.92
879 959 3.636231 CGGGGACACTCCTGCCAA 61.636 66.667 0.00 0.00 36.57 4.52
880 960 2.843545 GGGGACACTCCTGCCAAA 59.156 61.111 0.00 0.00 36.57 3.28
881 961 1.603739 GGGGACACTCCTGCCAAAC 60.604 63.158 0.00 0.00 36.57 2.93
882 962 1.966451 GGGACACTCCTGCCAAACG 60.966 63.158 0.00 0.00 36.57 3.60
883 963 1.966451 GGACACTCCTGCCAAACGG 60.966 63.158 0.00 0.00 32.53 4.44
918 1006 6.440647 TGTGGTGTGGATAAAGAGATAGAAGT 59.559 38.462 0.00 0.00 0.00 3.01
1071 1159 0.467290 CCTCCTCCTTCCTCTCCTCG 60.467 65.000 0.00 0.00 0.00 4.63
1072 1160 1.076632 TCCTCCTTCCTCTCCTCGC 60.077 63.158 0.00 0.00 0.00 5.03
1073 1161 2.131067 CCTCCTTCCTCTCCTCGCC 61.131 68.421 0.00 0.00 0.00 5.54
1107 1195 4.548513 CTCCCCTCCCCCTCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
1701 1795 2.042831 GCTGAGCGGCAGGAACATT 61.043 57.895 1.45 0.00 45.03 2.71
1713 1807 0.890683 GGAACATTGGCACCCTCAAG 59.109 55.000 0.00 0.00 0.00 3.02
1911 2005 4.171234 AGGGAGAAGAAATCACAGAGGAA 58.829 43.478 0.00 0.00 0.00 3.36
2005 2099 7.473735 TTCTATGCTAGATATGTGGGAAGAG 57.526 40.000 0.00 0.00 34.22 2.85
2016 2110 4.386867 TGTGGGAAGAGCTAGTAATTCG 57.613 45.455 0.00 0.00 0.00 3.34
2033 2127 8.738645 AGTAATTCGAAGCTGAAATCCTTTAT 57.261 30.769 3.35 0.00 0.00 1.40
2050 2248 6.127793 TCCTTTATGTACTACTCCCTCAGTC 58.872 44.000 0.00 0.00 36.43 3.51
2054 2252 2.291411 TGTACTACTCCCTCAGTCCCAC 60.291 54.545 0.00 0.00 36.43 4.61
2058 2256 0.987294 ACTCCCTCAGTCCCACAATG 59.013 55.000 0.00 0.00 0.00 2.82
2060 2258 0.692476 TCCCTCAGTCCCACAATGTG 59.308 55.000 6.37 6.37 0.00 3.21
2064 2262 2.038952 CCTCAGTCCCACAATGTGAGAA 59.961 50.000 15.91 0.00 37.43 2.87
2065 2263 3.332919 CTCAGTCCCACAATGTGAGAAG 58.667 50.000 15.91 3.70 37.43 2.85
2066 2264 2.705658 TCAGTCCCACAATGTGAGAAGT 59.294 45.455 15.91 0.00 35.23 3.01
2102 2342 7.737869 TGAGGGAGTAGTACATGTTTAAACAA 58.262 34.615 23.97 6.12 43.03 2.83
2109 2349 6.072112 AGTACATGTTTAAACAAGCAGTGG 57.928 37.500 23.97 10.47 43.03 4.00
2127 2367 2.234414 GTGGGGTGAACACGTAGGAATA 59.766 50.000 0.00 0.00 0.00 1.75
2146 2386 8.159229 AGGAATAATTAGGTTGTTAGGACACT 57.841 34.615 0.00 0.00 34.98 3.55
2162 2402 3.751698 GGACACTGATGTTACAAACCCTC 59.248 47.826 0.00 0.00 39.95 4.30
2173 2413 5.299782 TGTTACAAACCCTCAACATTACCAC 59.700 40.000 0.00 0.00 0.00 4.16
2177 2417 1.002773 ACCCTCAACATTACCACGGTC 59.997 52.381 0.00 0.00 0.00 4.79
2222 2462 4.084287 ACATGAATTGAGTTGCCTGTGAT 58.916 39.130 0.00 0.00 0.00 3.06
2372 2612 3.150848 TGCAGCGACACTTACTGATAG 57.849 47.619 0.00 0.00 33.10 2.08
2386 2626 8.616076 CACTTACTGATAGCATTAAAGGGAAAG 58.384 37.037 0.00 0.00 0.00 2.62
2445 2685 8.773404 TGATGTTAAAAGTCCTAGCTTAAGTC 57.227 34.615 4.02 0.00 0.00 3.01
2466 2706 0.883833 GGGCACACCAATCAAGACAG 59.116 55.000 0.00 0.00 39.85 3.51
2506 2746 9.765795 TGTTAACACCATTTTATTTGTTAAGGG 57.234 29.630 3.59 0.00 42.28 3.95
2519 2759 4.668138 TGTTAAGGGTGGATAAAGGCTT 57.332 40.909 0.00 0.00 0.00 4.35
2520 2760 5.005628 TGTTAAGGGTGGATAAAGGCTTT 57.994 39.130 17.76 17.76 0.00 3.51
2521 2761 4.770010 TGTTAAGGGTGGATAAAGGCTTTG 59.230 41.667 22.32 0.00 0.00 2.77
2526 2766 2.525368 GTGGATAAAGGCTTTGTGGGT 58.475 47.619 22.32 3.37 0.00 4.51
2535 2775 3.431415 AGGCTTTGTGGGTTTAGGATTC 58.569 45.455 0.00 0.00 0.00 2.52
2548 2788 7.947890 TGGGTTTAGGATTCTATGTTTTTGACT 59.052 33.333 0.00 0.00 0.00 3.41
2550 2790 7.755373 GGTTTAGGATTCTATGTTTTTGACTGC 59.245 37.037 0.00 0.00 0.00 4.40
2556 2796 7.334421 GGATTCTATGTTTTTGACTGCTGTAGA 59.666 37.037 0.00 0.00 0.00 2.59
2563 2803 7.771183 TGTTTTTGACTGCTGTAGAATTCTTT 58.229 30.769 14.36 0.00 0.00 2.52
2564 2804 7.701924 TGTTTTTGACTGCTGTAGAATTCTTTG 59.298 33.333 14.36 5.56 0.00 2.77
2595 2835 7.545362 TTAAGAAAGTCTATCATGCTTGAGC 57.455 36.000 8.40 0.00 42.50 4.26
2610 2850 4.818546 TGCTTGAGCCTCTTATTAATCTGC 59.181 41.667 0.00 0.00 41.18 4.26
2614 2854 6.731292 TGAGCCTCTTATTAATCTGCACTA 57.269 37.500 0.00 0.00 0.00 2.74
2616 2856 6.098266 TGAGCCTCTTATTAATCTGCACTACA 59.902 38.462 0.00 0.00 0.00 2.74
2618 2858 6.098982 AGCCTCTTATTAATCTGCACTACACT 59.901 38.462 0.00 0.00 0.00 3.55
2619 2859 6.201806 GCCTCTTATTAATCTGCACTACACTG 59.798 42.308 0.00 0.00 0.00 3.66
2621 2861 7.436673 CCTCTTATTAATCTGCACTACACTGTC 59.563 40.741 0.00 0.00 0.00 3.51
2624 2864 9.239002 CTTATTAATCTGCACTACACTGTCTAC 57.761 37.037 0.00 0.00 0.00 2.59
2625 2865 6.584185 TTAATCTGCACTACACTGTCTACA 57.416 37.500 0.00 0.00 0.00 2.74
2626 2866 3.917329 TCTGCACTACACTGTCTACAC 57.083 47.619 0.00 0.00 0.00 2.90
2627 2867 3.487372 TCTGCACTACACTGTCTACACT 58.513 45.455 0.00 0.00 0.00 3.55
2628 2868 3.253432 TCTGCACTACACTGTCTACACTG 59.747 47.826 0.00 0.00 0.00 3.66
2629 2869 2.956333 TGCACTACACTGTCTACACTGT 59.044 45.455 0.00 1.86 35.17 3.55
2649 2902 2.039418 TGTGGCAAGTGTAGAGTGAGT 58.961 47.619 0.00 0.00 0.00 3.41
2737 3179 5.047021 GCTTACAGATCCACCTATGCTGATA 60.047 44.000 0.00 0.00 0.00 2.15
2739 3181 5.894298 ACAGATCCACCTATGCTGATAAA 57.106 39.130 0.00 0.00 0.00 1.40
2751 3195 7.893302 ACCTATGCTGATAAAGTCTATCTAGCT 59.107 37.037 0.00 0.00 33.45 3.32
2765 3209 6.811170 GTCTATCTAGCTCTTGTATGGATTGC 59.189 42.308 0.00 0.00 0.00 3.56
2773 3217 3.615056 TCTTGTATGGATTGCGTACAACG 59.385 43.478 16.26 12.99 45.88 4.10
2784 3228 5.570262 TTGCGTACAACGATATGCTAATC 57.430 39.130 3.22 0.00 46.05 1.75
2798 3242 7.965655 CGATATGCTAATCCTGTACTTCTGTAG 59.034 40.741 0.00 0.00 0.00 2.74
2799 3243 8.713708 ATATGCTAATCCTGTACTTCTGTAGT 57.286 34.615 0.00 0.00 41.04 2.73
2800 3244 6.852420 TGCTAATCCTGTACTTCTGTAGTT 57.148 37.500 0.00 0.00 38.33 2.24
2803 3247 6.127423 GCTAATCCTGTACTTCTGTAGTTGGA 60.127 42.308 0.00 0.09 38.33 3.53
2805 3249 3.510360 TCCTGTACTTCTGTAGTTGGAGC 59.490 47.826 0.00 0.00 38.33 4.70
2823 3267 9.336171 AGTTGGAGCAATTTAATCTCTTAGATC 57.664 33.333 0.00 0.00 32.89 2.75
2824 3268 7.953158 TGGAGCAATTTAATCTCTTAGATCG 57.047 36.000 0.00 0.00 32.89 3.69
2825 3269 7.726216 TGGAGCAATTTAATCTCTTAGATCGA 58.274 34.615 0.00 0.00 32.89 3.59
2826 3270 8.204160 TGGAGCAATTTAATCTCTTAGATCGAA 58.796 33.333 0.00 0.00 32.89 3.71
2831 3275 6.420913 TTTAATCTCTTAGATCGAAGGGGG 57.579 41.667 14.63 6.67 32.89 5.40
2875 3321 3.417069 TGACCTCACGTGATGGAATTT 57.583 42.857 29.15 14.43 0.00 1.82
2933 3379 4.625311 GCATTGAACCGACAAATAAAAGGG 59.375 41.667 0.00 0.00 33.44 3.95
2934 3380 5.565834 GCATTGAACCGACAAATAAAAGGGA 60.566 40.000 0.00 0.00 33.44 4.20
2945 3391 6.710278 ACAAATAAAAGGGATGAAACCATGG 58.290 36.000 11.19 11.19 0.00 3.66
2989 3436 3.320541 AGAACTCTAGGAATCCTGATGCG 59.679 47.826 12.96 0.00 34.61 4.73
2996 3443 2.771943 AGGAATCCTGATGCGTTCCTTA 59.228 45.455 0.00 0.00 46.16 2.69
3001 3448 4.322080 TCCTGATGCGTTCCTTATAGTG 57.678 45.455 0.00 0.00 0.00 2.74
3040 3487 0.254178 CTGCCCACCACTAATCAGCT 59.746 55.000 0.00 0.00 0.00 4.24
3057 3504 3.378112 TCAGCTGTTCACCTGAAACTTTG 59.622 43.478 14.67 0.00 35.32 2.77
3058 3505 3.129287 CAGCTGTTCACCTGAAACTTTGT 59.871 43.478 5.25 0.00 35.58 2.83
3060 3507 4.947388 AGCTGTTCACCTGAAACTTTGTTA 59.053 37.500 0.00 0.00 35.58 2.41
3061 3508 5.066505 AGCTGTTCACCTGAAACTTTGTTAG 59.933 40.000 0.00 0.00 35.58 2.34
3062 3509 5.163652 GCTGTTCACCTGAAACTTTGTTAGT 60.164 40.000 0.00 0.00 39.32 2.24
3094 3541 6.995686 TGCTCTCACCATTTACTTCAAAGTTA 59.004 34.615 0.00 0.00 40.37 2.24
3097 3544 9.831737 CTCTCACCATTTACTTCAAAGTTATTG 57.168 33.333 0.00 0.00 40.37 1.90
3140 3587 4.484537 AGATGGATGTCTCAGTTGAAGG 57.515 45.455 0.00 0.00 0.00 3.46
3145 3592 3.557898 GGATGTCTCAGTTGAAGGCTTGA 60.558 47.826 3.46 0.00 0.00 3.02
3146 3593 3.558931 TGTCTCAGTTGAAGGCTTGAA 57.441 42.857 3.46 0.00 0.00 2.69
3147 3594 3.206150 TGTCTCAGTTGAAGGCTTGAAC 58.794 45.455 20.00 20.00 0.00 3.18
3148 3595 2.550180 GTCTCAGTTGAAGGCTTGAACC 59.450 50.000 23.11 6.51 0.00 3.62
3149 3596 2.439507 TCTCAGTTGAAGGCTTGAACCT 59.560 45.455 23.11 10.09 43.91 3.50
3162 3609 4.279420 GGCTTGAACCTTGTTTGAGAAGAT 59.721 41.667 0.00 0.00 0.00 2.40
3173 3620 6.274157 TGTTTGAGAAGATGAGAGTAGTCC 57.726 41.667 0.00 0.00 0.00 3.85
3174 3621 5.106118 TGTTTGAGAAGATGAGAGTAGTCCG 60.106 44.000 0.00 0.00 0.00 4.79
3175 3622 2.946329 TGAGAAGATGAGAGTAGTCCGC 59.054 50.000 0.00 0.00 0.00 5.54
3176 3623 2.946329 GAGAAGATGAGAGTAGTCCGCA 59.054 50.000 0.00 0.00 0.00 5.69
3177 3624 2.685897 AGAAGATGAGAGTAGTCCGCAC 59.314 50.000 0.00 0.00 0.00 5.34
3178 3625 1.394618 AGATGAGAGTAGTCCGCACC 58.605 55.000 0.00 0.00 0.00 5.01
3179 3626 0.386113 GATGAGAGTAGTCCGCACCC 59.614 60.000 0.00 0.00 0.00 4.61
3180 3627 0.324368 ATGAGAGTAGTCCGCACCCA 60.324 55.000 0.00 0.00 0.00 4.51
3200 3647 1.656441 CAGGCAGTGGCAAGTGAAC 59.344 57.895 20.04 0.00 43.71 3.18
3210 3657 0.166814 GCAAGTGAACGCATGGTCTC 59.833 55.000 0.00 0.00 0.00 3.36
3211 3658 1.800805 CAAGTGAACGCATGGTCTCT 58.199 50.000 0.00 0.00 0.00 3.10
3212 3659 2.930887 GCAAGTGAACGCATGGTCTCTA 60.931 50.000 0.00 0.00 0.00 2.43
3213 3660 3.325870 CAAGTGAACGCATGGTCTCTAA 58.674 45.455 0.00 0.00 0.00 2.10
3215 3662 1.661112 GTGAACGCATGGTCTCTAAGC 59.339 52.381 0.00 0.00 0.00 3.09
3217 3664 2.093500 TGAACGCATGGTCTCTAAGCAT 60.093 45.455 0.00 0.00 46.92 3.79
3218 3665 3.132111 TGAACGCATGGTCTCTAAGCATA 59.868 43.478 0.00 0.00 44.18 3.14
3219 3666 3.819564 ACGCATGGTCTCTAAGCATAA 57.180 42.857 0.00 0.00 44.18 1.90
3220 3667 4.342862 ACGCATGGTCTCTAAGCATAAT 57.657 40.909 0.00 0.00 44.18 1.28
3229 3676 7.326454 TGGTCTCTAAGCATAATAGCATGATC 58.674 38.462 0.00 0.00 36.85 2.92
3266 3713 3.564053 TTTTTCCCTACAAGTGGTCGT 57.436 42.857 0.00 0.00 0.00 4.34
3267 3714 4.686191 TTTTTCCCTACAAGTGGTCGTA 57.314 40.909 0.00 0.00 0.00 3.43
3268 3715 3.665745 TTTCCCTACAAGTGGTCGTAC 57.334 47.619 0.00 0.00 0.00 3.67
3271 3718 1.135575 CCCTACAAGTGGTCGTACGTC 60.136 57.143 16.05 9.80 0.00 4.34
3272 3719 1.808945 CCTACAAGTGGTCGTACGTCT 59.191 52.381 16.05 7.12 0.00 4.18
3274 3721 0.318445 ACAAGTGGTCGTACGTCTGC 60.318 55.000 16.05 6.92 0.00 4.26
3275 3722 1.007336 CAAGTGGTCGTACGTCTGCC 61.007 60.000 16.05 13.37 0.00 4.85
3277 3724 1.214589 GTGGTCGTACGTCTGCCAT 59.785 57.895 16.05 0.00 0.00 4.40
3278 3725 0.452987 GTGGTCGTACGTCTGCCATA 59.547 55.000 16.05 0.00 0.00 2.74
3282 3738 2.448219 GTCGTACGTCTGCCATAGTTC 58.552 52.381 16.05 0.00 0.00 3.01
3283 3739 1.402968 TCGTACGTCTGCCATAGTTCC 59.597 52.381 16.05 0.00 0.00 3.62
3287 3743 1.478510 ACGTCTGCCATAGTTCCTCTG 59.521 52.381 0.00 0.00 0.00 3.35
3290 3746 2.497675 GTCTGCCATAGTTCCTCTGTCA 59.502 50.000 0.00 0.00 0.00 3.58
3305 3761 2.156917 CTGTCAAAATGAGAGGCAGCA 58.843 47.619 0.00 0.00 34.48 4.41
3320 3776 1.002366 CAGCACGTCTGCCATAGTTC 58.998 55.000 0.00 0.00 45.53 3.01
3328 3784 2.166664 GTCTGCCATAGTTCCTCGAAGT 59.833 50.000 0.00 0.00 0.00 3.01
3348 3804 6.294620 CGAAGTAGAAAACAACTACTCCCTCT 60.295 42.308 0.00 0.00 46.29 3.69
3351 3807 7.008941 AGTAGAAAACAACTACTCCCTCTGTA 58.991 38.462 0.00 0.00 44.58 2.74
3352 3808 6.742559 AGAAAACAACTACTCCCTCTGTAA 57.257 37.500 0.00 0.00 0.00 2.41
3353 3809 7.133133 AGAAAACAACTACTCCCTCTGTAAA 57.867 36.000 0.00 0.00 0.00 2.01
3354 3810 7.217906 AGAAAACAACTACTCCCTCTGTAAAG 58.782 38.462 0.00 0.00 0.00 1.85
3358 3814 7.317722 ACAACTACTCCCTCTGTAAAGAAAT 57.682 36.000 0.00 0.00 0.00 2.17
3359 3815 8.431910 ACAACTACTCCCTCTGTAAAGAAATA 57.568 34.615 0.00 0.00 0.00 1.40
3366 3822 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
3367 3823 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
3368 3824 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
3369 3825 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
3401 3857 7.042335 ACTACTTTAGTGATCTAAATGCGCTT 58.958 34.615 9.73 0.00 42.75 4.68
3403 3859 9.197694 CTACTTTAGTGATCTAAATGCGCTTAT 57.802 33.333 9.73 0.00 42.75 1.73
3404 3860 8.077836 ACTTTAGTGATCTAAATGCGCTTATC 57.922 34.615 9.73 2.81 42.75 1.75
3405 3861 7.710907 ACTTTAGTGATCTAAATGCGCTTATCA 59.289 33.333 9.73 5.65 42.75 2.15
3406 3862 5.914085 AGTGATCTAAATGCGCTTATCAC 57.086 39.130 20.79 20.79 42.12 3.06
3407 3863 5.605534 AGTGATCTAAATGCGCTTATCACT 58.394 37.500 23.42 23.42 45.25 3.41
3409 3865 6.812312 GTGATCTAAATGCGCTTATCACTAC 58.188 40.000 20.95 5.51 39.88 2.73
3410 3866 6.642950 GTGATCTAAATGCGCTTATCACTACT 59.357 38.462 20.95 0.00 39.88 2.57
3412 3868 7.710907 TGATCTAAATGCGCTTATCACTACTTT 59.289 33.333 9.73 0.00 0.00 2.66
3415 3903 6.978343 AAATGCGCTTATCACTACTTTACA 57.022 33.333 9.73 0.00 0.00 2.41
3428 3916 7.693132 TCACTACTTTACAGAGGGAGTACTTA 58.307 38.462 0.00 0.00 0.00 2.24
3450 3938 7.609532 ACTTAGAATCACTTTAATGAAGCAGCT 59.390 33.333 0.00 0.00 39.04 4.24
3451 3939 6.434018 AGAATCACTTTAATGAAGCAGCTC 57.566 37.500 0.00 0.00 39.04 4.09
3452 3940 5.942236 AGAATCACTTTAATGAAGCAGCTCA 59.058 36.000 0.00 0.00 39.04 4.26
3470 3958 3.181461 GCTCATAGTGAGTATGCTGGGTT 60.181 47.826 8.58 0.00 45.94 4.11
3475 3963 4.910458 AGTGAGTATGCTGGGTTTAGTT 57.090 40.909 0.00 0.00 0.00 2.24
3484 3972 9.969001 AGTATGCTGGGTTTAGTTAAAATAAGA 57.031 29.630 0.00 0.00 0.00 2.10
3536 4140 3.010027 TCAAACCCATTCCTCTGCACATA 59.990 43.478 0.00 0.00 0.00 2.29
3559 4163 5.388408 ACTAAGCAGTAGTTACAGTGGAC 57.612 43.478 0.00 0.00 40.33 4.02
3565 4169 5.480772 AGCAGTAGTTACAGTGGACAAGTAT 59.519 40.000 0.00 0.00 0.00 2.12
3573 4177 9.654663 AGTTACAGTGGACAAGTATTTATTCTC 57.345 33.333 0.00 0.00 0.00 2.87
3605 4213 7.752239 CAGTATTTTGTCACTCTTTAATGCCTG 59.248 37.037 0.00 0.00 0.00 4.85
3621 4229 4.060038 TGCCTGCTCTATTAGTACTTGC 57.940 45.455 0.00 0.00 0.00 4.01
3624 4232 5.362717 TGCCTGCTCTATTAGTACTTGCTAA 59.637 40.000 0.00 0.00 35.68 3.09
3626 4234 6.931840 GCCTGCTCTATTAGTACTTGCTAATT 59.068 38.462 0.00 0.00 40.77 1.40
3708 4323 7.471539 GCAGACAGCACTTCCTAGGTAATTATA 60.472 40.741 9.08 0.00 44.79 0.98
3733 4348 8.474006 AATGGTGTTTCTTGTTTGTTAGTTTC 57.526 30.769 0.00 0.00 0.00 2.78
3765 4380 5.711976 CCTCTCCAATGAAGAAGCCTTTTTA 59.288 40.000 0.00 0.00 31.62 1.52
3770 4385 7.791029 TCCAATGAAGAAGCCTTTTTAGTTTT 58.209 30.769 0.00 0.00 31.62 2.43
3812 4427 5.912360 ATGTATGTTACACATCGATGCAG 57.088 39.130 25.11 19.36 42.23 4.41
3888 4504 9.716531 TTTCAATCACCACATATTTATTTGCAA 57.283 25.926 0.00 0.00 0.00 4.08
3889 4505 9.716531 TTCAATCACCACATATTTATTTGCAAA 57.283 25.926 15.44 15.44 0.00 3.68
3904 4520 5.843673 TTTGCAAATCTGGTAGTGTTTCA 57.156 34.783 8.05 0.00 0.00 2.69
3911 4527 4.537135 TCTGGTAGTGTTTCACATCCTC 57.463 45.455 2.80 0.00 36.74 3.71
3930 4546 6.097915 TCCTCGTTTCTAAGAACTGATGTT 57.902 37.500 0.00 0.00 39.42 2.71
3948 4629 9.448438 ACTGATGTTAAATTGCTAGAATACACA 57.552 29.630 0.00 0.00 0.00 3.72
3961 4730 6.477033 GCTAGAATACACACTGTTATGACCAG 59.523 42.308 0.00 0.00 36.01 4.00
3984 4853 2.996734 GGTTGGGGTGTGCATGGG 60.997 66.667 0.00 0.00 0.00 4.00
3995 4864 1.194218 GTGCATGGGCCTGGTTTTAT 58.806 50.000 4.53 0.00 40.13 1.40
3999 4868 3.031013 GCATGGGCCTGGTTTTATAAGT 58.969 45.455 4.53 0.00 0.00 2.24
4013 4882 4.902443 TTATAAGTCTCAGGCTGACTCG 57.098 45.455 14.43 4.32 43.16 4.18
4077 4946 2.124529 GCTGGGCCTAGCTCAACC 60.125 66.667 32.10 3.47 39.14 3.77
4086 4955 1.833630 CCTAGCTCAACCTGGACATGA 59.166 52.381 0.00 0.99 0.00 3.07
4088 4957 3.118112 CCTAGCTCAACCTGGACATGAAT 60.118 47.826 0.00 0.00 0.00 2.57
4089 4958 2.719739 AGCTCAACCTGGACATGAATG 58.280 47.619 0.00 0.00 0.00 2.67
4091 4960 3.084039 GCTCAACCTGGACATGAATGAA 58.916 45.455 0.00 0.00 0.00 2.57
4092 4961 3.507233 GCTCAACCTGGACATGAATGAAA 59.493 43.478 0.00 0.00 0.00 2.69
4093 4962 4.159135 GCTCAACCTGGACATGAATGAAAT 59.841 41.667 0.00 0.00 0.00 2.17
4094 4963 5.337009 GCTCAACCTGGACATGAATGAAATT 60.337 40.000 0.00 0.00 40.93 1.82
4096 4965 7.395190 TCAACCTGGACATGAATGAAATTAG 57.605 36.000 0.00 0.00 36.07 1.73
4097 4966 5.841957 ACCTGGACATGAATGAAATTAGC 57.158 39.130 0.00 0.00 36.07 3.09
4124 4998 2.999355 GCTGCTGGTCTTGAAACTCTAG 59.001 50.000 0.00 0.00 0.00 2.43
4126 5000 4.636249 CTGCTGGTCTTGAAACTCTAGTT 58.364 43.478 0.00 0.00 40.50 2.24
4131 5005 4.899457 TGGTCTTGAAACTCTAGTTCCAGA 59.101 41.667 0.00 0.00 37.25 3.86
4144 5044 2.644798 AGTTCCAGACCAGCCATAAACT 59.355 45.455 0.00 0.00 0.00 2.66
4205 5113 1.380785 CCTAGTGGGCCGTAGTCCA 60.381 63.158 10.84 0.00 0.00 4.02
4211 5119 0.609662 TGGGCCGTAGTCCAACTAAC 59.390 55.000 0.00 0.00 31.62 2.34
4212 5120 0.900421 GGGCCGTAGTCCAACTAACT 59.100 55.000 0.00 0.00 31.62 2.24
4222 5130 2.802816 GTCCAACTAACTGTGTGCTCTG 59.197 50.000 0.00 0.00 0.00 3.35
4223 5131 2.434336 TCCAACTAACTGTGTGCTCTGT 59.566 45.455 0.00 0.00 0.00 3.41
4224 5132 3.639561 TCCAACTAACTGTGTGCTCTGTA 59.360 43.478 0.00 0.00 0.00 2.74
4225 5133 4.100344 TCCAACTAACTGTGTGCTCTGTAA 59.900 41.667 0.00 0.00 0.00 2.41
4226 5134 4.211374 CCAACTAACTGTGTGCTCTGTAAC 59.789 45.833 0.00 0.00 0.00 2.50
4227 5135 4.665833 ACTAACTGTGTGCTCTGTAACA 57.334 40.909 0.00 0.00 0.00 2.41
4228 5136 5.018539 ACTAACTGTGTGCTCTGTAACAA 57.981 39.130 0.00 0.00 0.00 2.83
4229 5137 5.424757 ACTAACTGTGTGCTCTGTAACAAA 58.575 37.500 0.00 0.00 0.00 2.83
4230 5138 4.882671 AACTGTGTGCTCTGTAACAAAG 57.117 40.909 0.00 0.00 37.61 2.77
4231 5139 3.206150 ACTGTGTGCTCTGTAACAAAGG 58.794 45.455 0.00 0.00 36.17 3.11
4232 5140 3.118408 ACTGTGTGCTCTGTAACAAAGGA 60.118 43.478 0.00 0.00 36.17 3.36
4233 5141 4.067896 CTGTGTGCTCTGTAACAAAGGAT 58.932 43.478 0.00 0.00 29.42 3.24
4234 5142 3.814842 TGTGTGCTCTGTAACAAAGGATG 59.185 43.478 0.00 0.00 0.00 3.51
4235 5143 3.815401 GTGTGCTCTGTAACAAAGGATGT 59.185 43.478 0.00 0.00 46.82 3.06
4236 5144 3.814842 TGTGCTCTGTAACAAAGGATGTG 59.185 43.478 0.00 0.00 42.99 3.21
4237 5145 4.065088 GTGCTCTGTAACAAAGGATGTGA 58.935 43.478 0.00 0.00 42.99 3.58
4238 5146 4.697352 GTGCTCTGTAACAAAGGATGTGAT 59.303 41.667 0.00 0.00 42.99 3.06
4239 5147 4.696877 TGCTCTGTAACAAAGGATGTGATG 59.303 41.667 0.00 0.00 42.99 3.07
4240 5148 4.697352 GCTCTGTAACAAAGGATGTGATGT 59.303 41.667 0.00 0.00 42.99 3.06
4241 5149 5.874810 GCTCTGTAACAAAGGATGTGATGTA 59.125 40.000 0.00 0.00 42.99 2.29
4242 5150 6.540189 GCTCTGTAACAAAGGATGTGATGTAT 59.460 38.462 0.00 0.00 42.99 2.29
4243 5151 7.066284 GCTCTGTAACAAAGGATGTGATGTATT 59.934 37.037 0.00 0.00 42.99 1.89
4244 5152 8.267620 TCTGTAACAAAGGATGTGATGTATTG 57.732 34.615 0.00 0.00 42.99 1.90
4245 5153 8.100164 TCTGTAACAAAGGATGTGATGTATTGA 58.900 33.333 0.00 0.00 42.99 2.57
4246 5154 8.039603 TGTAACAAAGGATGTGATGTATTGAC 57.960 34.615 0.00 0.00 42.99 3.18
4247 5155 6.515272 AACAAAGGATGTGATGTATTGACC 57.485 37.500 0.00 0.00 42.99 4.02
4248 5156 5.569355 ACAAAGGATGTGATGTATTGACCA 58.431 37.500 0.00 0.00 41.93 4.02
4249 5157 6.009589 ACAAAGGATGTGATGTATTGACCAA 58.990 36.000 0.00 0.00 41.93 3.67
4250 5158 6.493115 ACAAAGGATGTGATGTATTGACCAAA 59.507 34.615 0.00 0.00 41.93 3.28
4251 5159 7.015098 ACAAAGGATGTGATGTATTGACCAAAA 59.985 33.333 0.00 0.00 41.93 2.44
4252 5160 7.722949 AAGGATGTGATGTATTGACCAAAAT 57.277 32.000 0.00 0.00 0.00 1.82
4306 5214 1.966762 CCTTGTTGGACACATGGGC 59.033 57.895 0.00 0.00 43.98 5.36
4307 5215 0.540365 CCTTGTTGGACACATGGGCT 60.540 55.000 0.00 0.00 43.98 5.19
4308 5216 1.271871 CCTTGTTGGACACATGGGCTA 60.272 52.381 0.00 0.00 43.98 3.93
4310 5218 2.198827 TGTTGGACACATGGGCTAAG 57.801 50.000 0.00 0.00 0.00 2.18
4311 5219 0.811281 GTTGGACACATGGGCTAAGC 59.189 55.000 0.00 0.00 0.00 3.09
4323 5233 5.105595 ACATGGGCTAAGCAGAAGAAAATTC 60.106 40.000 0.00 0.00 0.00 2.17
4335 5245 5.067023 CAGAAGAAAATTCCTAGGCCATCAC 59.933 44.000 5.01 0.00 0.00 3.06
4342 5252 5.717119 ATTCCTAGGCCATCACTTTAAGT 57.283 39.130 5.01 0.00 0.00 2.24
4418 5399 0.329261 ATAGCACTGGCCAAAGCTGA 59.671 50.000 31.39 19.71 42.56 4.26
4442 5423 6.931838 AGCCTTATACTTTTAAAAAGGTGGC 58.068 36.000 14.28 14.90 39.15 5.01
4443 5424 5.803461 GCCTTATACTTTTAAAAAGGTGGCG 59.197 40.000 14.28 0.04 39.15 5.69
4444 5425 6.327154 CCTTATACTTTTAAAAAGGTGGCGG 58.673 40.000 10.07 2.30 33.50 6.13
4445 5426 6.071784 CCTTATACTTTTAAAAAGGTGGCGGT 60.072 38.462 10.07 0.00 33.50 5.68
4446 5427 3.720949 ACTTTTAAAAAGGTGGCGGTC 57.279 42.857 1.66 0.00 0.00 4.79
4449 5430 3.994204 TTTAAAAAGGTGGCGGTCTTC 57.006 42.857 0.00 0.00 0.00 2.87
4450 5431 2.943036 TAAAAAGGTGGCGGTCTTCT 57.057 45.000 0.00 0.00 0.00 2.85
4451 5432 1.318576 AAAAAGGTGGCGGTCTTCTG 58.681 50.000 0.00 0.00 0.00 3.02
4452 5433 0.182775 AAAAGGTGGCGGTCTTCTGT 59.817 50.000 0.00 0.00 0.00 3.41
4474 5462 8.646900 TCTGTTAAATTTCCCTTTTACTTGCAT 58.353 29.630 0.00 0.00 0.00 3.96
4547 5535 1.829849 CTCCTGAGCTCAGATGAACCA 59.170 52.381 39.34 15.70 46.59 3.67
4562 5550 7.226720 TCAGATGAACCAAGAAGAACAGTAAAC 59.773 37.037 0.00 0.00 0.00 2.01
4568 5556 7.321745 ACCAAGAAGAACAGTAAACTTTGAG 57.678 36.000 0.00 0.00 0.00 3.02
4584 5572 7.628769 AACTTTGAGAAAATGGCAAACAAAT 57.371 28.000 0.00 0.00 0.00 2.32
4587 5575 6.616774 TTGAGAAAATGGCAAACAAATTCC 57.383 33.333 0.00 0.00 31.64 3.01
4600 5589 8.136800 GGCAAACAAATTCCAAAATTCTGAATT 58.863 29.630 9.76 9.76 39.66 2.17
4627 5616 2.159114 GGCAACAAACATGGTTGAGTGT 60.159 45.455 29.74 5.09 46.56 3.55
4628 5617 3.520569 GCAACAAACATGGTTGAGTGTT 58.479 40.909 29.74 11.60 46.56 3.32
4629 5618 3.551485 GCAACAAACATGGTTGAGTGTTC 59.449 43.478 29.74 11.04 46.56 3.18
4630 5619 4.677779 GCAACAAACATGGTTGAGTGTTCT 60.678 41.667 29.74 2.32 46.56 3.01
4631 5620 5.449862 GCAACAAACATGGTTGAGTGTTCTA 60.450 40.000 29.74 0.00 46.56 2.10
4632 5621 5.751243 ACAAACATGGTTGAGTGTTCTAC 57.249 39.130 29.74 0.00 37.56 2.59
4633 5622 4.578928 ACAAACATGGTTGAGTGTTCTACC 59.421 41.667 29.74 1.93 45.79 3.18
4634 5623 4.706842 AACATGGTTGAGTGTTCTACCT 57.293 40.909 0.00 0.00 45.78 3.08
4635 5624 5.818678 AACATGGTTGAGTGTTCTACCTA 57.181 39.130 0.00 0.00 45.78 3.08
4636 5625 5.148651 ACATGGTTGAGTGTTCTACCTAC 57.851 43.478 0.00 0.00 45.78 3.18
4637 5626 3.928727 TGGTTGAGTGTTCTACCTACG 57.071 47.619 9.04 0.00 45.78 3.51
4638 5627 3.489355 TGGTTGAGTGTTCTACCTACGA 58.511 45.455 9.04 0.00 45.78 3.43
4639 5628 3.504906 TGGTTGAGTGTTCTACCTACGAG 59.495 47.826 9.04 0.00 45.78 4.18
4640 5629 3.500014 GTTGAGTGTTCTACCTACGAGC 58.500 50.000 0.00 0.00 0.00 5.03
4641 5630 2.786777 TGAGTGTTCTACCTACGAGCA 58.213 47.619 0.00 0.00 0.00 4.26
4642 5631 3.151554 TGAGTGTTCTACCTACGAGCAA 58.848 45.455 0.00 0.00 0.00 3.91
4643 5632 3.570975 TGAGTGTTCTACCTACGAGCAAA 59.429 43.478 0.00 0.00 0.00 3.68
4644 5633 4.219944 TGAGTGTTCTACCTACGAGCAAAT 59.780 41.667 0.00 0.00 0.00 2.32
4645 5634 4.745649 AGTGTTCTACCTACGAGCAAATC 58.254 43.478 0.00 0.00 0.00 2.17
4646 5635 4.463186 AGTGTTCTACCTACGAGCAAATCT 59.537 41.667 0.00 0.00 0.00 2.40
4647 5636 4.799428 GTGTTCTACCTACGAGCAAATCTC 59.201 45.833 0.00 0.00 38.47 2.75
4648 5637 4.142227 TGTTCTACCTACGAGCAAATCTCC 60.142 45.833 0.00 0.00 38.62 3.71
4649 5638 2.617308 TCTACCTACGAGCAAATCTCCG 59.383 50.000 0.00 0.00 38.62 4.63
4650 5639 1.183549 ACCTACGAGCAAATCTCCGT 58.816 50.000 0.00 0.00 38.62 4.69
4651 5640 1.135083 ACCTACGAGCAAATCTCCGTG 60.135 52.381 0.00 0.00 38.62 4.94
4652 5641 1.134367 CCTACGAGCAAATCTCCGTGA 59.866 52.381 0.00 0.00 38.62 4.35
4653 5642 2.416836 CCTACGAGCAAATCTCCGTGAA 60.417 50.000 0.00 0.00 38.62 3.18
4654 5643 1.429463 ACGAGCAAATCTCCGTGAAC 58.571 50.000 0.00 0.00 38.62 3.18
4655 5644 1.270094 ACGAGCAAATCTCCGTGAACA 60.270 47.619 0.00 0.00 38.62 3.18
4656 5645 1.798223 CGAGCAAATCTCCGTGAACAA 59.202 47.619 0.00 0.00 38.62 2.83
4657 5646 2.223144 CGAGCAAATCTCCGTGAACAAA 59.777 45.455 0.00 0.00 38.62 2.83
4658 5647 3.120199 CGAGCAAATCTCCGTGAACAAAT 60.120 43.478 0.00 0.00 38.62 2.32
4659 5648 4.161333 GAGCAAATCTCCGTGAACAAATG 58.839 43.478 0.00 0.00 35.77 2.32
4660 5649 3.820467 AGCAAATCTCCGTGAACAAATGA 59.180 39.130 0.00 0.00 0.00 2.57
4661 5650 3.914364 GCAAATCTCCGTGAACAAATGAC 59.086 43.478 0.00 0.00 0.00 3.06
4662 5651 4.556501 GCAAATCTCCGTGAACAAATGACA 60.557 41.667 0.00 0.00 0.00 3.58
4663 5652 5.702865 CAAATCTCCGTGAACAAATGACAT 58.297 37.500 0.00 0.00 0.00 3.06
4664 5653 5.551760 AATCTCCGTGAACAAATGACATC 57.448 39.130 0.00 0.00 0.00 3.06
4665 5654 4.271696 TCTCCGTGAACAAATGACATCT 57.728 40.909 0.00 0.00 0.00 2.90
4666 5655 3.996363 TCTCCGTGAACAAATGACATCTG 59.004 43.478 0.00 0.00 0.00 2.90
4667 5656 3.738982 TCCGTGAACAAATGACATCTGT 58.261 40.909 0.00 0.00 0.00 3.41
4668 5657 3.498018 TCCGTGAACAAATGACATCTGTG 59.502 43.478 0.00 0.00 0.00 3.66
4669 5658 3.365264 CCGTGAACAAATGACATCTGTGG 60.365 47.826 0.00 0.00 0.00 4.17
4670 5659 3.250762 CGTGAACAAATGACATCTGTGGT 59.749 43.478 0.00 0.00 0.00 4.16
4671 5660 4.539870 GTGAACAAATGACATCTGTGGTG 58.460 43.478 0.00 0.00 0.00 4.17
4672 5661 3.004629 TGAACAAATGACATCTGTGGTGC 59.995 43.478 0.00 0.00 0.00 5.01
4673 5662 1.536766 ACAAATGACATCTGTGGTGCG 59.463 47.619 0.00 0.00 0.00 5.34
4674 5663 0.523072 AAATGACATCTGTGGTGCGC 59.477 50.000 0.00 0.00 0.00 6.09
4675 5664 0.321919 AATGACATCTGTGGTGCGCT 60.322 50.000 9.73 0.00 0.00 5.92
4676 5665 1.022982 ATGACATCTGTGGTGCGCTG 61.023 55.000 9.73 0.00 0.00 5.18
4677 5666 2.359107 ACATCTGTGGTGCGCTGG 60.359 61.111 9.73 0.00 0.00 4.85
4678 5667 3.129502 CATCTGTGGTGCGCTGGG 61.130 66.667 9.73 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 14 1.335810 TGGATGTATGTCGTCGCTACC 59.664 52.381 0.00 0.00 33.20 3.18
35 37 1.598130 GCGACAGGCCATACATCCC 60.598 63.158 5.01 0.00 34.80 3.85
82 84 1.973812 GCCTTCTCCGCCAGCTTTT 60.974 57.895 0.00 0.00 0.00 2.27
96 98 1.186267 ACCGACTTCTCCTTCGCCTT 61.186 55.000 0.00 0.00 33.78 4.35
100 102 1.801913 CGCACCGACTTCTCCTTCG 60.802 63.158 0.00 0.00 34.93 3.79
102 104 1.258445 ATCCGCACCGACTTCTCCTT 61.258 55.000 0.00 0.00 0.00 3.36
103 105 1.668101 GATCCGCACCGACTTCTCCT 61.668 60.000 0.00 0.00 0.00 3.69
111 113 4.147449 CCAGCAGATCCGCACCGA 62.147 66.667 3.28 0.00 0.00 4.69
164 196 0.259647 TGGATCAAGGGGAAGCATGG 59.740 55.000 0.00 0.00 0.00 3.66
208 243 4.021925 GTCCTGCTCGCCCACCTT 62.022 66.667 0.00 0.00 0.00 3.50
221 256 3.680196 TAGCCACCTCCCCGTCCT 61.680 66.667 0.00 0.00 0.00 3.85
345 395 2.159099 GGGCTCGACTGTCAATGACATA 60.159 50.000 17.10 2.51 41.94 2.29
346 396 1.406069 GGGCTCGACTGTCAATGACAT 60.406 52.381 17.10 7.24 41.94 3.06
352 402 4.373116 GCGGGGCTCGACTGTCAA 62.373 66.667 12.93 0.00 42.43 3.18
389 440 1.608336 CCACCTACCTCCACCGTCA 60.608 63.158 0.00 0.00 0.00 4.35
466 519 2.317609 CGGTTTGCGTCCAGACAGG 61.318 63.158 0.00 0.00 39.47 4.00
518 571 6.642950 TCATCAAATTTTATCCGTTTTGCGTT 59.357 30.769 0.00 0.00 39.32 4.84
553 606 2.503375 GATGACGCGGTCGAACGT 60.503 61.111 25.62 16.68 46.91 3.99
558 611 1.869574 CAGACAGATGACGCGGTCG 60.870 63.158 12.47 5.09 42.43 4.79
560 613 0.033504 AAACAGACAGATGACGCGGT 59.966 50.000 12.47 0.00 0.00 5.68
564 617 3.996363 TGGATCAAAACAGACAGATGACG 59.004 43.478 0.00 0.00 0.00 4.35
605 683 3.376540 CTCGCTCACCTATGAAGTTAGC 58.623 50.000 0.00 0.00 33.30 3.09
657 735 6.626302 TGCAAAATAGCATAAAACACCCTAC 58.374 36.000 0.00 0.00 40.11 3.18
698 776 7.768582 AGACATCGGACATAACAAATCACATAA 59.231 33.333 0.00 0.00 0.00 1.90
725 803 2.695127 ACCGGATTTACAATACCGCA 57.305 45.000 9.46 0.00 43.37 5.69
732 810 7.388500 CAGTTTCCTACTAAACCGGATTTACAA 59.612 37.037 9.46 0.00 39.66 2.41
755 833 4.189231 GTCCCGCAGAAATATTACACAGT 58.811 43.478 0.00 0.00 0.00 3.55
757 835 3.119065 TCGTCCCGCAGAAATATTACACA 60.119 43.478 0.00 0.00 0.00 3.72
865 945 1.966451 CCGTTTGGCAGGAGTGTCC 60.966 63.158 0.00 0.00 36.58 4.02
877 957 4.020378 CACCCGTTCGCCCGTTTG 62.020 66.667 0.00 0.00 0.00 2.93
878 958 4.550697 ACACCCGTTCGCCCGTTT 62.551 61.111 0.00 0.00 0.00 3.60
883 963 4.922026 ACACCACACCCGTTCGCC 62.922 66.667 0.00 0.00 0.00 5.54
884 964 3.645975 CACACCACACCCGTTCGC 61.646 66.667 0.00 0.00 0.00 4.70
1072 1160 1.758906 GGAAGGAGACCGAGGAGGG 60.759 68.421 0.00 0.00 46.96 4.30
1503 1597 4.266070 GCGAGCGCGGTGGAGATA 62.266 66.667 24.57 0.00 38.16 1.98
1701 1795 0.991146 TTAGCATCTTGAGGGTGCCA 59.009 50.000 0.00 0.00 39.62 4.92
1713 1807 0.530870 GCGTCCTGGGAGTTAGCATC 60.531 60.000 0.00 0.00 0.00 3.91
1911 2005 1.210478 CTGTATGTACCTTGGGCAGCT 59.790 52.381 0.00 0.00 0.00 4.24
2005 2099 5.755861 AGGATTTCAGCTTCGAATTACTAGC 59.244 40.000 0.00 0.00 0.00 3.42
2016 2110 8.950208 AGTAGTACATAAAGGATTTCAGCTTC 57.050 34.615 2.52 0.00 40.09 3.86
2033 2127 1.997791 TGGGACTGAGGGAGTAGTACA 59.002 52.381 2.52 0.00 33.83 2.90
2078 2276 7.148457 GCTTGTTTAAACATGTACTACTCCCTC 60.148 40.741 26.11 9.07 38.95 4.30
2079 2277 6.653740 GCTTGTTTAAACATGTACTACTCCCT 59.346 38.462 26.11 0.00 38.95 4.20
2081 2279 7.172703 ACTGCTTGTTTAAACATGTACTACTCC 59.827 37.037 26.11 13.27 38.95 3.85
2084 2282 7.075741 CCACTGCTTGTTTAAACATGTACTAC 58.924 38.462 26.11 14.83 38.95 2.73
2085 2283 6.205853 CCCACTGCTTGTTTAAACATGTACTA 59.794 38.462 26.11 10.78 38.95 1.82
2086 2284 5.009610 CCCACTGCTTGTTTAAACATGTACT 59.990 40.000 26.11 13.93 38.95 2.73
2087 2285 5.219633 CCCACTGCTTGTTTAAACATGTAC 58.780 41.667 26.11 15.88 38.95 2.90
2102 2342 1.404479 TACGTGTTCACCCCACTGCT 61.404 55.000 0.00 0.00 0.00 4.24
2109 2349 5.756833 CCTAATTATTCCTACGTGTTCACCC 59.243 44.000 0.00 0.00 0.00 4.61
2127 2367 6.779860 ACATCAGTGTCCTAACAACCTAATT 58.220 36.000 0.00 0.00 37.08 1.40
2146 2386 6.207810 GGTAATGTTGAGGGTTTGTAACATCA 59.792 38.462 0.00 0.00 41.43 3.07
2162 2402 1.355971 CCTCGACCGTGGTAATGTTG 58.644 55.000 0.00 0.00 0.00 3.33
2173 2413 2.004583 TAATGTCAAAGCCTCGACCG 57.995 50.000 0.00 0.00 0.00 4.79
2177 2417 5.460419 GTCACTAGATAATGTCAAAGCCTCG 59.540 44.000 0.00 0.00 0.00 4.63
2222 2462 2.546368 CTGCACTAACTGTTTACGGCAA 59.454 45.455 0.00 0.00 0.00 4.52
2287 2527 7.791029 TGCAGTGGATCAACTATATAAACTGA 58.209 34.615 1.34 0.00 35.63 3.41
2372 2612 8.745590 TGTAGGATTTTACTTTCCCTTTAATGC 58.254 33.333 0.00 0.00 32.05 3.56
2386 2626 9.573133 CTTGATTGGAAACATGTAGGATTTTAC 57.427 33.333 0.00 0.00 42.32 2.01
2445 2685 1.303236 TCTTGATTGGTGTGCCCCG 60.303 57.895 0.00 0.00 0.00 5.73
2466 2706 6.039616 TGGTGTTAACATTTCTTTGTCTTGC 58.960 36.000 12.26 0.00 0.00 4.01
2499 2739 4.770531 ACAAAGCCTTTATCCACCCTTAAC 59.229 41.667 0.00 0.00 0.00 2.01
2506 2746 2.525368 ACCCACAAAGCCTTTATCCAC 58.475 47.619 0.00 0.00 0.00 4.02
2519 2759 8.364142 CAAAAACATAGAATCCTAAACCCACAA 58.636 33.333 0.00 0.00 0.00 3.33
2520 2760 7.726291 TCAAAAACATAGAATCCTAAACCCACA 59.274 33.333 0.00 0.00 0.00 4.17
2521 2761 8.027189 GTCAAAAACATAGAATCCTAAACCCAC 58.973 37.037 0.00 0.00 0.00 4.61
2526 2766 8.514594 CAGCAGTCAAAAACATAGAATCCTAAA 58.485 33.333 0.00 0.00 0.00 1.85
2535 2775 8.725148 AGAATTCTACAGCAGTCAAAAACATAG 58.275 33.333 6.06 0.00 0.00 2.23
2548 2788 3.485394 TGGTGCAAAGAATTCTACAGCA 58.515 40.909 23.33 23.33 32.96 4.41
2550 2790 8.514594 TCTTAAATGGTGCAAAGAATTCTACAG 58.485 33.333 8.75 2.97 0.00 2.74
2556 2796 8.424133 AGACTTTCTTAAATGGTGCAAAGAATT 58.576 29.630 9.23 1.68 37.68 2.17
2563 2803 7.415541 GCATGATAGACTTTCTTAAATGGTGCA 60.416 37.037 0.00 0.00 0.00 4.57
2564 2804 6.914757 GCATGATAGACTTTCTTAAATGGTGC 59.085 38.462 0.00 0.00 0.00 5.01
2595 2835 7.268586 ACAGTGTAGTGCAGATTAATAAGAGG 58.731 38.462 0.00 0.00 0.00 3.69
2616 2856 1.119684 TGCCACACAGTGTAGACAGT 58.880 50.000 5.69 0.00 0.00 3.55
2618 2858 1.484653 ACTTGCCACACAGTGTAGACA 59.515 47.619 5.69 2.06 0.00 3.41
2619 2859 1.867233 CACTTGCCACACAGTGTAGAC 59.133 52.381 5.69 0.00 0.00 2.59
2621 2861 1.953559 ACACTTGCCACACAGTGTAG 58.046 50.000 5.69 0.00 38.23 2.74
2624 2864 2.138320 CTCTACACTTGCCACACAGTG 58.862 52.381 0.00 0.00 35.09 3.66
2625 2865 1.762957 ACTCTACACTTGCCACACAGT 59.237 47.619 0.00 0.00 0.00 3.55
2626 2866 2.138320 CACTCTACACTTGCCACACAG 58.862 52.381 0.00 0.00 0.00 3.66
2627 2867 1.760029 TCACTCTACACTTGCCACACA 59.240 47.619 0.00 0.00 0.00 3.72
2628 2868 2.224066 ACTCACTCTACACTTGCCACAC 60.224 50.000 0.00 0.00 0.00 3.82
2629 2869 2.039418 ACTCACTCTACACTTGCCACA 58.961 47.619 0.00 0.00 0.00 4.17
2630 2870 2.821991 ACTCACTCTACACTTGCCAC 57.178 50.000 0.00 0.00 0.00 5.01
2658 2911 8.611257 TCCTAACTCCCTGAGATTTTTGAATTA 58.389 33.333 0.00 0.00 33.32 1.40
2659 2912 7.470192 TCCTAACTCCCTGAGATTTTTGAATT 58.530 34.615 0.00 0.00 33.32 2.17
2660 2913 7.032598 TCCTAACTCCCTGAGATTTTTGAAT 57.967 36.000 0.00 0.00 33.32 2.57
2701 3143 6.094048 GTGGATCTGTAAGCATGCTTCTAAAA 59.906 38.462 35.10 15.92 37.47 1.52
2703 3145 5.118990 GTGGATCTGTAAGCATGCTTCTAA 58.881 41.667 35.10 20.30 37.47 2.10
2737 3179 8.719645 ATCCATACAAGAGCTAGATAGACTTT 57.280 34.615 0.00 0.00 0.00 2.66
2739 3181 7.309744 GCAATCCATACAAGAGCTAGATAGACT 60.310 40.741 0.00 0.00 0.00 3.24
2751 3195 3.615056 CGTTGTACGCAATCCATACAAGA 59.385 43.478 0.00 0.00 38.98 3.02
2760 3204 5.570262 TTAGCATATCGTTGTACGCAATC 57.430 39.130 0.00 0.00 42.21 2.67
2765 3209 5.220381 ACAGGATTAGCATATCGTTGTACG 58.780 41.667 0.00 0.00 44.19 3.67
2773 3217 8.798402 ACTACAGAAGTACAGGATTAGCATATC 58.202 37.037 0.00 0.00 36.36 1.63
2784 3228 3.258372 TGCTCCAACTACAGAAGTACAGG 59.742 47.826 0.00 0.00 37.50 4.00
2798 3242 8.279103 CGATCTAAGAGATTAAATTGCTCCAAC 58.721 37.037 0.00 0.00 34.53 3.77
2799 3243 8.204160 TCGATCTAAGAGATTAAATTGCTCCAA 58.796 33.333 0.00 0.00 34.53 3.53
2800 3244 7.726216 TCGATCTAAGAGATTAAATTGCTCCA 58.274 34.615 0.00 0.00 34.53 3.86
2803 3247 7.659390 CCCTTCGATCTAAGAGATTAAATTGCT 59.341 37.037 8.50 0.00 34.53 3.91
2805 3249 7.389053 CCCCCTTCGATCTAAGAGATTAAATTG 59.611 40.741 8.50 0.00 34.53 2.32
2843 3289 9.864034 CATCACGTGAGGTCATTTTATATTTAC 57.136 33.333 24.41 0.00 0.00 2.01
2910 3356 4.625311 CCCTTTTATTTGTCGGTTCAATGC 59.375 41.667 0.00 0.00 0.00 3.56
2920 3366 6.818142 CCATGGTTTCATCCCTTTTATTTGTC 59.182 38.462 2.57 0.00 0.00 3.18
2926 3372 6.133356 GGATACCATGGTTTCATCCCTTTTA 58.867 40.000 29.28 7.53 29.14 1.52
2933 3379 7.451255 TGGATTTATGGATACCATGGTTTCATC 59.549 37.037 29.28 22.51 44.84 2.92
2934 3380 7.304479 TGGATTTATGGATACCATGGTTTCAT 58.696 34.615 29.28 25.44 44.84 2.57
2965 3412 5.335583 CGCATCAGGATTCCTAGAGTTCTAG 60.336 48.000 4.51 8.85 44.22 2.43
2974 3421 2.910688 GGAACGCATCAGGATTCCTA 57.089 50.000 4.51 0.00 38.08 2.94
2989 3436 4.576463 CCAGATTGTGCCACTATAAGGAAC 59.424 45.833 0.00 0.00 35.07 3.62
2996 3443 2.715046 CACACCAGATTGTGCCACTAT 58.285 47.619 0.00 0.00 40.51 2.12
3026 3473 2.744202 GGTGAACAGCTGATTAGTGGTG 59.256 50.000 23.35 0.00 37.65 4.17
3040 3487 6.827586 AACTAACAAAGTTTCAGGTGAACA 57.172 33.333 0.00 0.00 46.61 3.18
3106 3553 7.830697 TGAGACATCCATCTATGTGTTTTCAAT 59.169 33.333 0.00 0.00 40.17 2.57
3113 3560 5.423290 TCAACTGAGACATCCATCTATGTGT 59.577 40.000 0.00 0.00 40.17 3.72
3117 3564 5.454471 GCCTTCAACTGAGACATCCATCTAT 60.454 44.000 0.00 0.00 0.00 1.98
3118 3565 4.141846 GCCTTCAACTGAGACATCCATCTA 60.142 45.833 0.00 0.00 0.00 1.98
3121 3568 2.575279 AGCCTTCAACTGAGACATCCAT 59.425 45.455 0.00 0.00 0.00 3.41
3140 3587 4.900635 TCTTCTCAAACAAGGTTCAAGC 57.099 40.909 0.00 0.00 0.00 4.01
3145 3592 5.934781 ACTCTCATCTTCTCAAACAAGGTT 58.065 37.500 0.00 0.00 0.00 3.50
3146 3593 5.559148 ACTCTCATCTTCTCAAACAAGGT 57.441 39.130 0.00 0.00 0.00 3.50
3147 3594 6.696411 ACTACTCTCATCTTCTCAAACAAGG 58.304 40.000 0.00 0.00 0.00 3.61
3148 3595 6.811170 GGACTACTCTCATCTTCTCAAACAAG 59.189 42.308 0.00 0.00 0.00 3.16
3149 3596 6.570571 CGGACTACTCTCATCTTCTCAAACAA 60.571 42.308 0.00 0.00 0.00 2.83
3150 3597 5.106118 CGGACTACTCTCATCTTCTCAAACA 60.106 44.000 0.00 0.00 0.00 2.83
3151 3598 5.336744 CGGACTACTCTCATCTTCTCAAAC 58.663 45.833 0.00 0.00 0.00 2.93
3152 3599 4.142359 GCGGACTACTCTCATCTTCTCAAA 60.142 45.833 0.00 0.00 0.00 2.69
3162 3609 0.965866 CTGGGTGCGGACTACTCTCA 60.966 60.000 7.11 0.00 0.00 3.27
3177 3624 4.980702 TTGCCACTGCCTGCTGGG 62.981 66.667 12.06 1.66 36.33 4.45
3178 3625 3.371063 CTTGCCACTGCCTGCTGG 61.371 66.667 5.03 5.03 36.33 4.85
3179 3626 2.596631 ACTTGCCACTGCCTGCTG 60.597 61.111 0.00 0.00 36.33 4.41
3180 3627 2.596631 CACTTGCCACTGCCTGCT 60.597 61.111 0.00 0.00 36.33 4.24
3200 3647 4.328440 GCTATTATGCTTAGAGACCATGCG 59.672 45.833 0.00 0.00 0.00 4.73
3212 3659 9.293404 AGTTAACATGATCATGCTATTATGCTT 57.707 29.630 31.17 18.25 42.39 3.91
3213 3660 8.859236 AGTTAACATGATCATGCTATTATGCT 57.141 30.769 31.17 19.32 42.39 3.79
3219 3666 9.836864 TGAAACTAGTTAACATGATCATGCTAT 57.163 29.630 31.17 20.94 42.39 2.97
3220 3667 9.836864 ATGAAACTAGTTAACATGATCATGCTA 57.163 29.630 31.17 22.45 42.39 3.49
3242 3689 4.517453 CGACCACTTGTAGGGAAAAATGAA 59.483 41.667 0.00 0.00 0.00 2.57
3250 3697 1.167851 CGTACGACCACTTGTAGGGA 58.832 55.000 10.44 0.00 0.00 4.20
3253 3700 2.847901 CAGACGTACGACCACTTGTAG 58.152 52.381 24.41 0.68 0.00 2.74
3266 3713 2.688446 CAGAGGAACTATGGCAGACGTA 59.312 50.000 0.00 0.00 45.01 3.57
3267 3714 1.478510 CAGAGGAACTATGGCAGACGT 59.521 52.381 0.00 0.00 45.01 4.34
3268 3715 2.215907 CAGAGGAACTATGGCAGACG 57.784 55.000 0.00 0.00 45.01 4.18
3277 3724 5.569630 GCCTCTCATTTTGACAGAGGAACTA 60.570 44.000 16.80 0.00 46.61 2.24
3278 3725 4.805609 GCCTCTCATTTTGACAGAGGAACT 60.806 45.833 16.80 0.00 46.61 3.01
3282 3738 3.008330 CTGCCTCTCATTTTGACAGAGG 58.992 50.000 9.49 9.49 46.46 3.69
3283 3739 2.419324 GCTGCCTCTCATTTTGACAGAG 59.581 50.000 0.00 0.00 0.00 3.35
3287 3743 1.135859 CGTGCTGCCTCTCATTTTGAC 60.136 52.381 0.00 0.00 0.00 3.18
3290 3746 1.160137 GACGTGCTGCCTCTCATTTT 58.840 50.000 0.00 0.00 0.00 1.82
3305 3761 0.456221 CGAGGAACTATGGCAGACGT 59.544 55.000 0.00 0.00 41.55 4.34
3320 3776 5.862860 GGAGTAGTTGTTTTCTACTTCGAGG 59.137 44.000 6.98 0.00 45.18 4.63
3328 3784 7.844493 TTACAGAGGGAGTAGTTGTTTTCTA 57.156 36.000 0.00 0.00 0.00 2.10
3376 3832 6.574350 AGCGCATTTAGATCACTAAAGTAGT 58.426 36.000 11.47 0.00 46.97 2.73
3378 3834 9.193133 GATAAGCGCATTTAGATCACTAAAGTA 57.807 33.333 11.47 0.00 46.97 2.24
3379 3835 7.710907 TGATAAGCGCATTTAGATCACTAAAGT 59.289 33.333 11.47 0.00 46.97 2.66
3382 3838 7.210174 AGTGATAAGCGCATTTAGATCACTAA 58.790 34.615 21.08 0.00 43.64 2.24
3383 3839 6.749139 AGTGATAAGCGCATTTAGATCACTA 58.251 36.000 21.08 0.00 43.64 2.74
3384 3840 5.605534 AGTGATAAGCGCATTTAGATCACT 58.394 37.500 18.27 18.27 41.56 3.41
3386 3842 6.749139 AGTAGTGATAAGCGCATTTAGATCA 58.251 36.000 11.47 0.15 0.00 2.92
3387 3843 7.644986 AAGTAGTGATAAGCGCATTTAGATC 57.355 36.000 11.47 0.00 0.00 2.75
3388 3844 8.979574 GTAAAGTAGTGATAAGCGCATTTAGAT 58.020 33.333 11.47 0.00 0.00 1.98
3389 3845 7.977293 TGTAAAGTAGTGATAAGCGCATTTAGA 59.023 33.333 11.47 0.00 0.00 2.10
3390 3846 8.126871 TGTAAAGTAGTGATAAGCGCATTTAG 57.873 34.615 11.47 0.00 0.00 1.85
3391 3847 7.977293 TCTGTAAAGTAGTGATAAGCGCATTTA 59.023 33.333 11.47 0.00 0.00 1.40
3392 3848 6.816640 TCTGTAAAGTAGTGATAAGCGCATTT 59.183 34.615 11.47 0.00 0.00 2.32
3393 3849 6.338146 TCTGTAAAGTAGTGATAAGCGCATT 58.662 36.000 11.47 3.50 0.00 3.56
3394 3850 5.902681 TCTGTAAAGTAGTGATAAGCGCAT 58.097 37.500 11.47 0.00 0.00 4.73
3395 3851 5.319140 TCTGTAAAGTAGTGATAAGCGCA 57.681 39.130 11.47 0.00 0.00 6.09
3398 3854 6.097129 ACTCCCTCTGTAAAGTAGTGATAAGC 59.903 42.308 0.00 0.00 0.00 3.09
3401 3857 7.870027 AGTACTCCCTCTGTAAAGTAGTGATA 58.130 38.462 0.00 0.00 0.00 2.15
3403 3859 6.137104 AGTACTCCCTCTGTAAAGTAGTGA 57.863 41.667 0.00 0.00 0.00 3.41
3404 3860 6.837471 AAGTACTCCCTCTGTAAAGTAGTG 57.163 41.667 0.00 0.00 30.33 2.74
3405 3861 7.926705 TCTAAGTACTCCCTCTGTAAAGTAGT 58.073 38.462 0.00 0.00 30.94 2.73
3406 3862 8.804912 TTCTAAGTACTCCCTCTGTAAAGTAG 57.195 38.462 0.00 0.00 0.00 2.57
3407 3863 9.406113 GATTCTAAGTACTCCCTCTGTAAAGTA 57.594 37.037 0.00 0.00 0.00 2.24
3408 3864 7.894364 TGATTCTAAGTACTCCCTCTGTAAAGT 59.106 37.037 0.00 0.00 0.00 2.66
3409 3865 8.192110 GTGATTCTAAGTACTCCCTCTGTAAAG 58.808 40.741 0.00 0.00 0.00 1.85
3410 3866 7.894364 AGTGATTCTAAGTACTCCCTCTGTAAA 59.106 37.037 0.00 0.00 0.00 2.01
3412 3868 6.971340 AGTGATTCTAAGTACTCCCTCTGTA 58.029 40.000 0.00 0.00 0.00 2.74
3415 3903 8.896722 TTAAAGTGATTCTAAGTACTCCCTCT 57.103 34.615 0.00 0.00 0.00 3.69
3428 3916 5.942236 TGAGCTGCTTCATTAAAGTGATTCT 59.058 36.000 2.53 0.00 37.31 2.40
3450 3938 5.661312 ACTAAACCCAGCATACTCACTATGA 59.339 40.000 0.00 0.00 35.06 2.15
3451 3939 5.918608 ACTAAACCCAGCATACTCACTATG 58.081 41.667 0.00 0.00 36.08 2.23
3452 3940 6.561519 AACTAAACCCAGCATACTCACTAT 57.438 37.500 0.00 0.00 0.00 2.12
3510 3998 2.943199 GCAGAGGAATGGGTTTGAGAGG 60.943 54.545 0.00 0.00 0.00 3.69
3518 4006 2.578021 AGTTATGTGCAGAGGAATGGGT 59.422 45.455 0.00 0.00 0.00 4.51
3556 4160 8.258708 ACTGTACCAGAGAATAAATACTTGTCC 58.741 37.037 0.00 0.00 35.18 4.02
3571 4175 6.692486 AGAGTGACAAAATACTGTACCAGAG 58.308 40.000 0.00 0.00 35.18 3.35
3572 4176 6.665992 AGAGTGACAAAATACTGTACCAGA 57.334 37.500 0.00 0.00 35.18 3.86
3573 4177 7.730364 AAAGAGTGACAAAATACTGTACCAG 57.270 36.000 0.00 0.00 37.52 4.00
3583 4191 5.244626 AGCAGGCATTAAAGAGTGACAAAAT 59.755 36.000 0.00 0.00 0.00 1.82
3590 4198 6.989169 ACTAATAGAGCAGGCATTAAAGAGTG 59.011 38.462 0.00 0.00 0.00 3.51
3592 4200 8.364142 AGTACTAATAGAGCAGGCATTAAAGAG 58.636 37.037 0.00 0.00 0.00 2.85
3598 4206 5.059833 GCAAGTACTAATAGAGCAGGCATT 58.940 41.667 0.00 0.00 0.00 3.56
3630 4238 9.883142 AATTGTACAAAATGGACTTCTTCAAAA 57.117 25.926 13.23 0.00 30.83 2.44
3631 4239 9.883142 AAATTGTACAAAATGGACTTCTTCAAA 57.117 25.926 13.23 0.00 30.83 2.69
3634 4249 9.528018 TGAAAATTGTACAAAATGGACTTCTTC 57.472 29.630 13.23 7.71 30.83 2.87
3636 4251 8.912988 TCTGAAAATTGTACAAAATGGACTTCT 58.087 29.630 13.23 0.00 30.83 2.85
3644 4259 9.903682 CAGTCTCATCTGAAAATTGTACAAAAT 57.096 29.630 13.23 1.68 37.61 1.82
3651 4266 6.119240 TCTCCAGTCTCATCTGAAAATTGT 57.881 37.500 0.00 0.00 37.61 2.71
3708 4323 7.274686 CGAAACTAACAAACAAGAAACACCATT 59.725 33.333 0.00 0.00 0.00 3.16
3728 4343 1.351017 TGGAGAGGCAATTCCGAAACT 59.649 47.619 0.00 0.00 40.77 2.66
3733 4348 2.042686 TCATTGGAGAGGCAATTCCG 57.957 50.000 0.00 0.00 40.77 4.30
3804 4419 9.764363 AACTGAAAATCTAATATACTGCATCGA 57.236 29.630 0.00 0.00 0.00 3.59
3881 4497 6.183360 TGTGAAACACTACCAGATTTGCAAAT 60.183 34.615 24.33 24.33 45.67 2.32
3884 4500 4.203226 TGTGAAACACTACCAGATTTGCA 58.797 39.130 0.00 0.00 45.67 4.08
3885 4501 4.829064 TGTGAAACACTACCAGATTTGC 57.171 40.909 0.00 0.00 45.67 3.68
3904 4520 5.723672 TCAGTTCTTAGAAACGAGGATGT 57.276 39.130 0.00 0.00 34.27 3.06
3911 4527 8.840867 GCAATTTAACATCAGTTCTTAGAAACG 58.159 33.333 0.00 0.00 39.15 3.60
3945 4626 5.702865 CCAAATTCTGGTCATAACAGTGTG 58.297 41.667 0.00 0.00 40.78 3.82
3961 4730 0.755686 TGCACACCCCAACCAAATTC 59.244 50.000 0.00 0.00 0.00 2.17
3987 4856 5.248477 AGTCAGCCTGAGACTTATAAAACCA 59.752 40.000 0.00 0.00 43.47 3.67
3995 4864 0.811915 GCGAGTCAGCCTGAGACTTA 59.188 55.000 0.00 0.00 45.79 2.24
3999 4868 2.999485 GCAGCGAGTCAGCCTGAGA 61.999 63.158 0.00 0.00 38.01 3.27
4074 4943 5.716228 TGCTAATTTCATTCATGTCCAGGTT 59.284 36.000 0.00 0.00 0.00 3.50
4077 4946 7.273320 AGATGCTAATTTCATTCATGTCCAG 57.727 36.000 0.00 0.00 0.00 3.86
4096 4965 1.134580 TCAAGACCAGCAGCTAGATGC 60.135 52.381 25.19 25.19 46.88 3.91
4097 4966 2.975732 TCAAGACCAGCAGCTAGATG 57.024 50.000 2.90 2.90 0.00 2.90
4124 4998 3.073274 AGTTTATGGCTGGTCTGGAAC 57.927 47.619 0.00 0.00 0.00 3.62
4126 5000 2.642311 TGAAGTTTATGGCTGGTCTGGA 59.358 45.455 0.00 0.00 0.00 3.86
4131 5005 4.574674 TGATCTGAAGTTTATGGCTGGT 57.425 40.909 0.00 0.00 0.00 4.00
4195 5103 2.288640 ACACAGTTAGTTGGACTACGGC 60.289 50.000 0.00 0.00 28.93 5.68
4205 5113 5.018539 TGTTACAGAGCACACAGTTAGTT 57.981 39.130 0.00 0.00 0.00 2.24
4211 5119 3.466836 TCCTTTGTTACAGAGCACACAG 58.533 45.455 0.00 0.00 0.00 3.66
4212 5120 3.552132 TCCTTTGTTACAGAGCACACA 57.448 42.857 0.00 0.00 0.00 3.72
4222 5130 7.120579 TGGTCAATACATCACATCCTTTGTTAC 59.879 37.037 0.00 0.00 36.00 2.50
4223 5131 7.171653 TGGTCAATACATCACATCCTTTGTTA 58.828 34.615 0.00 0.00 36.00 2.41
4224 5132 6.009589 TGGTCAATACATCACATCCTTTGTT 58.990 36.000 0.00 0.00 36.00 2.83
4225 5133 5.569355 TGGTCAATACATCACATCCTTTGT 58.431 37.500 0.00 0.00 39.91 2.83
4226 5134 6.513806 TTGGTCAATACATCACATCCTTTG 57.486 37.500 0.00 0.00 0.00 2.77
4227 5135 7.537596 TTTTGGTCAATACATCACATCCTTT 57.462 32.000 0.00 0.00 0.00 3.11
4228 5136 7.396907 TCATTTTGGTCAATACATCACATCCTT 59.603 33.333 0.00 0.00 0.00 3.36
4229 5137 6.891361 TCATTTTGGTCAATACATCACATCCT 59.109 34.615 0.00 0.00 0.00 3.24
4230 5138 6.974622 GTCATTTTGGTCAATACATCACATCC 59.025 38.462 0.00 0.00 0.00 3.51
4231 5139 7.485913 GTGTCATTTTGGTCAATACATCACATC 59.514 37.037 0.00 0.00 0.00 3.06
4232 5140 7.315142 GTGTCATTTTGGTCAATACATCACAT 58.685 34.615 0.00 0.00 0.00 3.21
4233 5141 6.294453 GGTGTCATTTTGGTCAATACATCACA 60.294 38.462 0.00 0.00 0.00 3.58
4234 5142 6.092748 GGTGTCATTTTGGTCAATACATCAC 58.907 40.000 0.00 0.00 0.00 3.06
4235 5143 5.772169 TGGTGTCATTTTGGTCAATACATCA 59.228 36.000 0.00 0.00 0.00 3.07
4236 5144 6.266168 TGGTGTCATTTTGGTCAATACATC 57.734 37.500 0.00 0.00 0.00 3.06
4237 5145 6.493115 TCTTGGTGTCATTTTGGTCAATACAT 59.507 34.615 0.00 0.00 0.00 2.29
4238 5146 5.830457 TCTTGGTGTCATTTTGGTCAATACA 59.170 36.000 0.00 0.00 0.00 2.29
4239 5147 6.325919 TCTTGGTGTCATTTTGGTCAATAC 57.674 37.500 0.00 0.00 0.00 1.89
4240 5148 7.537596 AATCTTGGTGTCATTTTGGTCAATA 57.462 32.000 0.00 0.00 0.00 1.90
4241 5149 6.423776 AATCTTGGTGTCATTTTGGTCAAT 57.576 33.333 0.00 0.00 0.00 2.57
4242 5150 5.867903 AATCTTGGTGTCATTTTGGTCAA 57.132 34.783 0.00 0.00 0.00 3.18
4243 5151 5.867903 AAATCTTGGTGTCATTTTGGTCA 57.132 34.783 0.00 0.00 0.00 4.02
4250 5158 9.754382 GCATGAAATATAAATCTTGGTGTCATT 57.246 29.630 0.00 0.00 0.00 2.57
4251 5159 9.139734 AGCATGAAATATAAATCTTGGTGTCAT 57.860 29.630 0.00 0.00 32.39 3.06
4252 5160 8.523915 AGCATGAAATATAAATCTTGGTGTCA 57.476 30.769 0.00 0.00 32.39 3.58
4306 5214 5.298026 GGCCTAGGAATTTTCTTCTGCTTAG 59.702 44.000 14.75 0.00 0.00 2.18
4307 5215 5.193679 GGCCTAGGAATTTTCTTCTGCTTA 58.806 41.667 14.75 0.00 0.00 3.09
4308 5216 4.019858 GGCCTAGGAATTTTCTTCTGCTT 58.980 43.478 14.75 0.00 0.00 3.91
4310 5218 3.356290 TGGCCTAGGAATTTTCTTCTGC 58.644 45.455 14.75 0.00 0.00 4.26
4311 5219 5.067023 GTGATGGCCTAGGAATTTTCTTCTG 59.933 44.000 14.75 0.00 0.00 3.02
4323 5233 4.636206 GTGAACTTAAAGTGATGGCCTAGG 59.364 45.833 3.67 3.67 0.00 3.02
4335 5245 6.461092 GGGAAAACCCTTCTGTGAACTTAAAG 60.461 42.308 0.00 0.00 34.51 1.85
4342 5252 3.680777 AAGGGAAAACCCTTCTGTGAA 57.319 42.857 13.96 0.00 46.11 3.18
4418 5399 6.349860 CGCCACCTTTTTAAAAGTATAAGGCT 60.350 38.462 21.29 7.01 39.13 4.58
4442 5423 5.959618 AAGGGAAATTTAACAGAAGACCG 57.040 39.130 0.00 0.00 0.00 4.79
4443 5424 8.857098 AGTAAAAGGGAAATTTAACAGAAGACC 58.143 33.333 0.00 0.00 0.00 3.85
4446 5427 8.978539 GCAAGTAAAAGGGAAATTTAACAGAAG 58.021 33.333 0.00 0.00 0.00 2.85
4449 5430 8.831715 ATGCAAGTAAAAGGGAAATTTAACAG 57.168 30.769 0.00 0.00 0.00 3.16
4450 5431 9.620259 AAATGCAAGTAAAAGGGAAATTTAACA 57.380 25.926 0.00 0.00 0.00 2.41
4474 5462 7.540299 CAAACTACAAGTAAGGTCCAACAAAA 58.460 34.615 0.00 0.00 0.00 2.44
4539 5527 7.497925 AGTTTACTGTTCTTCTTGGTTCATC 57.502 36.000 0.00 0.00 0.00 2.92
4562 5550 7.134163 GGAATTTGTTTGCCATTTTCTCAAAG 58.866 34.615 0.00 0.00 31.30 2.77
4568 5556 8.645730 AATTTTGGAATTTGTTTGCCATTTTC 57.354 26.923 0.00 0.00 31.48 2.29
4574 5562 6.616774 TCAGAATTTTGGAATTTGTTTGCC 57.383 33.333 0.00 0.00 35.65 4.52
4627 5616 3.066342 CGGAGATTTGCTCGTAGGTAGAA 59.934 47.826 0.00 0.00 44.91 2.10
4628 5617 2.617308 CGGAGATTTGCTCGTAGGTAGA 59.383 50.000 0.00 0.00 44.91 2.59
4629 5618 2.358267 ACGGAGATTTGCTCGTAGGTAG 59.642 50.000 0.00 0.00 44.91 3.18
4630 5619 2.098607 CACGGAGATTTGCTCGTAGGTA 59.901 50.000 0.00 0.00 44.91 3.08
4631 5620 1.135083 CACGGAGATTTGCTCGTAGGT 60.135 52.381 0.00 0.00 44.91 3.08
4632 5621 1.134367 TCACGGAGATTTGCTCGTAGG 59.866 52.381 0.00 0.00 44.91 3.18
4633 5622 2.561733 TCACGGAGATTTGCTCGTAG 57.438 50.000 0.00 0.00 44.91 3.51
4634 5623 2.029739 TGTTCACGGAGATTTGCTCGTA 60.030 45.455 0.00 0.00 44.91 3.43
4635 5624 1.270094 TGTTCACGGAGATTTGCTCGT 60.270 47.619 0.00 0.00 44.91 4.18
4636 5625 1.428448 TGTTCACGGAGATTTGCTCG 58.572 50.000 0.00 0.00 44.91 5.03
4637 5626 3.896648 TTTGTTCACGGAGATTTGCTC 57.103 42.857 0.00 0.00 43.17 4.26
4638 5627 3.820467 TCATTTGTTCACGGAGATTTGCT 59.180 39.130 0.00 0.00 0.00 3.91
4639 5628 3.914364 GTCATTTGTTCACGGAGATTTGC 59.086 43.478 0.00 0.00 0.00 3.68
4640 5629 5.107109 TGTCATTTGTTCACGGAGATTTG 57.893 39.130 0.00 0.00 0.00 2.32
4641 5630 5.707298 AGATGTCATTTGTTCACGGAGATTT 59.293 36.000 0.00 0.00 0.00 2.17
4642 5631 5.122869 CAGATGTCATTTGTTCACGGAGATT 59.877 40.000 0.00 0.00 0.00 2.40
4643 5632 4.633126 CAGATGTCATTTGTTCACGGAGAT 59.367 41.667 0.00 0.00 0.00 2.75
4644 5633 3.996363 CAGATGTCATTTGTTCACGGAGA 59.004 43.478 0.00 0.00 0.00 3.71
4645 5634 3.748048 ACAGATGTCATTTGTTCACGGAG 59.252 43.478 3.20 0.00 0.00 4.63
4646 5635 3.498018 CACAGATGTCATTTGTTCACGGA 59.502 43.478 6.27 0.00 0.00 4.69
4647 5636 3.365264 CCACAGATGTCATTTGTTCACGG 60.365 47.826 6.27 1.91 0.00 4.94
4648 5637 3.250762 ACCACAGATGTCATTTGTTCACG 59.749 43.478 6.27 0.00 0.00 4.35
4649 5638 4.539870 CACCACAGATGTCATTTGTTCAC 58.460 43.478 6.27 0.00 0.00 3.18
4650 5639 3.004629 GCACCACAGATGTCATTTGTTCA 59.995 43.478 6.27 0.00 0.00 3.18
4651 5640 3.568538 GCACCACAGATGTCATTTGTTC 58.431 45.455 6.27 0.00 0.00 3.18
4652 5641 2.030893 CGCACCACAGATGTCATTTGTT 60.031 45.455 6.27 0.00 0.00 2.83
4653 5642 1.536766 CGCACCACAGATGTCATTTGT 59.463 47.619 3.20 3.20 0.00 2.83
4654 5643 1.730121 GCGCACCACAGATGTCATTTG 60.730 52.381 0.30 1.87 0.00 2.32
4655 5644 0.523072 GCGCACCACAGATGTCATTT 59.477 50.000 0.30 0.00 0.00 2.32
4656 5645 0.321919 AGCGCACCACAGATGTCATT 60.322 50.000 11.47 0.00 0.00 2.57
4657 5646 1.022982 CAGCGCACCACAGATGTCAT 61.023 55.000 11.47 0.00 0.00 3.06
4658 5647 1.668793 CAGCGCACCACAGATGTCA 60.669 57.895 11.47 0.00 0.00 3.58
4659 5648 2.393768 CCAGCGCACCACAGATGTC 61.394 63.158 11.47 0.00 0.00 3.06
4660 5649 2.359107 CCAGCGCACCACAGATGT 60.359 61.111 11.47 0.00 0.00 3.06
4661 5650 3.129502 CCCAGCGCACCACAGATG 61.130 66.667 11.47 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.