Multiple sequence alignment - TraesCS4B01G212500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G212500 chr4B 100.000 6777 0 0 1 6777 450908108 450914884 0.000000e+00 12515.0
1 TraesCS4B01G212500 chr4B 89.367 395 38 4 4393 4784 623988815 623989208 1.700000e-135 494.0
2 TraesCS4B01G212500 chr4B 98.361 61 1 0 5767 5827 16092514 16092454 2.580000e-19 108.0
3 TraesCS4B01G212500 chr4D 95.914 4968 121 30 830 5772 366317318 366322228 0.000000e+00 7974.0
4 TraesCS4B01G212500 chr4D 96.429 756 22 3 5898 6649 366322259 366323013 0.000000e+00 1242.0
5 TraesCS4B01G212500 chr4D 86.097 784 91 7 1 770 366314632 366315411 0.000000e+00 828.0
6 TraesCS4B01G212500 chr4D 93.151 73 5 0 5759 5831 390735401 390735329 2.580000e-19 108.0
7 TraesCS4B01G212500 chr4A 94.786 3606 113 38 836 4393 98605558 98601980 0.000000e+00 5548.0
8 TraesCS4B01G212500 chr4A 94.648 1009 32 8 4784 5772 98601990 98600984 0.000000e+00 1544.0
9 TraesCS4B01G212500 chr4A 95.509 757 25 5 5899 6649 98600955 98600202 0.000000e+00 1201.0
10 TraesCS4B01G212500 chr4A 90.234 768 57 3 4784 5535 56482882 56482117 0.000000e+00 987.0
11 TraesCS4B01G212500 chr4A 87.216 704 87 3 19 722 98607916 98607216 0.000000e+00 798.0
12 TraesCS4B01G212500 chr4A 90.026 391 37 2 4393 4783 594672235 594672623 7.840000e-139 505.0
13 TraesCS4B01G212500 chr4A 88.112 286 26 3 4109 4393 56483150 56482872 3.920000e-87 333.0
14 TraesCS4B01G212500 chr4A 93.204 103 5 2 3577 3677 671947187 671947085 4.230000e-32 150.0
15 TraesCS4B01G212500 chr4A 85.593 118 16 1 1 118 543335602 543335486 9.230000e-24 122.0
16 TraesCS4B01G212500 chr4A 92.857 70 4 1 5762 5831 213025414 213025482 4.320000e-17 100.0
17 TraesCS4B01G212500 chr4A 90.741 54 5 0 81 134 701330652 701330599 9.430000e-09 73.1
18 TraesCS4B01G212500 chr3D 91.927 768 44 3 4784 5535 443673800 443673035 0.000000e+00 1059.0
19 TraesCS4B01G212500 chr3D 89.514 391 39 2 4394 4783 468435864 468436253 1.700000e-135 494.0
20 TraesCS4B01G212500 chr3D 88.502 287 25 3 4109 4393 443674070 443673790 2.340000e-89 340.0
21 TraesCS4B01G212500 chr3D 89.565 115 8 3 3576 3689 457021518 457021629 7.080000e-30 143.0
22 TraesCS4B01G212500 chr3D 72.727 363 87 9 241 597 610546150 610546506 2.000000e-20 111.0
23 TraesCS4B01G212500 chr3D 94.915 59 3 0 74 132 594497848 594497906 7.240000e-15 93.5
24 TraesCS4B01G212500 chr3D 82.828 99 9 4 77 174 379457190 379457281 1.570000e-11 82.4
25 TraesCS4B01G212500 chr3D 95.918 49 2 0 63 111 10709327 10709279 5.630000e-11 80.5
26 TraesCS4B01G212500 chr2A 88.170 634 57 6 4938 5555 578017975 578017344 0.000000e+00 739.0
27 TraesCS4B01G212500 chr2A 87.580 314 30 5 4081 4393 578033424 578033119 8.360000e-94 355.0
28 TraesCS4B01G212500 chr2A 95.882 170 7 0 4784 4953 578033129 578032960 6.690000e-70 276.0
29 TraesCS4B01G212500 chr2A 93.443 122 7 1 3967 4088 578038893 578038773 5.400000e-41 180.0
30 TraesCS4B01G212500 chr5D 93.130 393 25 2 4390 4782 489685463 489685073 5.890000e-160 575.0
31 TraesCS4B01G212500 chr5D 94.203 69 4 0 5763 5831 37210119 37210051 9.300000e-19 106.0
32 TraesCS4B01G212500 chr5D 95.385 65 3 0 5767 5831 264370780 264370844 3.340000e-18 104.0
33 TraesCS4B01G212500 chr5D 95.385 65 3 0 5767 5831 281224129 281224193 3.340000e-18 104.0
34 TraesCS4B01G212500 chr3A 91.094 393 33 2 4392 4783 641628132 641628523 1.290000e-146 531.0
35 TraesCS4B01G212500 chr3A 91.150 113 9 1 3573 3685 599863692 599863803 1.180000e-32 152.0
36 TraesCS4B01G212500 chr3A 98.305 59 1 0 74 132 725149510 725149568 3.340000e-18 104.0
37 TraesCS4B01G212500 chr3A 89.831 59 6 0 5845 5903 223533209 223533267 7.290000e-10 76.8
38 TraesCS4B01G212500 chr7A 90.979 388 33 2 4396 4783 125683644 125683259 7.790000e-144 521.0
39 TraesCS4B01G212500 chr7A 94.872 39 2 0 5865 5903 374005769 374005731 2.040000e-05 62.1
40 TraesCS4B01G212500 chr5B 89.822 393 40 0 4390 4782 603690832 603690440 7.840000e-139 505.0
41 TraesCS4B01G212500 chr6D 89.594 394 39 2 4391 4783 422947249 422946857 3.650000e-137 499.0
42 TraesCS4B01G212500 chr6B 88.502 287 25 3 4109 4393 101435028 101435308 2.340000e-89 340.0
43 TraesCS4B01G212500 chr6B 90.964 166 12 3 5371 5535 101435359 101435522 3.180000e-53 220.0
44 TraesCS4B01G212500 chr6B 94.286 70 3 1 5763 5831 82007385 82007454 9.300000e-19 106.0
45 TraesCS4B01G212500 chr6B 100.000 32 0 0 5345 5376 101435317 101435348 7.340000e-05 60.2
46 TraesCS4B01G212500 chr3B 92.174 115 6 1 3577 3688 637088603 637088489 7.030000e-35 159.0
47 TraesCS4B01G212500 chr3B 96.825 63 2 0 5769 5831 805684942 805684880 9.300000e-19 106.0
48 TraesCS4B01G212500 chr3B 95.000 60 3 0 73 132 798110564 798110623 2.010000e-15 95.3
49 TraesCS4B01G212500 chr3B 89.831 59 6 0 5845 5903 257782055 257782113 7.290000e-10 76.8
50 TraesCS4B01G212500 chr3B 80.460 87 16 1 1 87 828113270 828113355 1.580000e-06 65.8
51 TraesCS4B01G212500 chr1D 92.727 110 7 1 3577 3685 105352413 105352522 2.530000e-34 158.0
52 TraesCS4B01G212500 chr1D 90.000 110 10 1 3577 3685 105968383 105968492 2.550000e-29 141.0
53 TraesCS4B01G212500 chr2B 92.035 113 6 1 3576 3688 273740479 273740370 9.100000e-34 156.0
54 TraesCS4B01G212500 chrUn 95.652 69 3 0 5763 5831 134234982 134235050 2.000000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G212500 chr4B 450908108 450914884 6776 False 12515.00 12515 100.000000 1 6777 1 chr4B.!!$F1 6776
1 TraesCS4B01G212500 chr4D 366314632 366323013 8381 False 3348.00 7974 92.813333 1 6649 3 chr4D.!!$F1 6648
2 TraesCS4B01G212500 chr4A 98600202 98607916 7714 True 2272.75 5548 93.039750 19 6649 4 chr4A.!!$R5 6630
3 TraesCS4B01G212500 chr4A 56482117 56483150 1033 True 660.00 987 89.173000 4109 5535 2 chr4A.!!$R4 1426
4 TraesCS4B01G212500 chr3D 443673035 443674070 1035 True 699.50 1059 90.214500 4109 5535 2 chr3D.!!$R2 1426
5 TraesCS4B01G212500 chr2A 578017344 578017975 631 True 739.00 739 88.170000 4938 5555 1 chr2A.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 226 0.026674 CGGTAAGCGTCGTATCGTCA 59.973 55.000 0.00 0.00 0.00 4.35 F
654 656 0.250234 CAACGATGAGAGGCCAAGGA 59.750 55.000 5.01 0.00 0.00 3.36 F
1457 3446 1.101049 CATCCCCGAAACCCCGATTG 61.101 60.000 0.00 0.00 0.00 2.67 F
3048 5065 0.745845 CCGAAGGCCTGGATCTTGTG 60.746 60.000 5.69 0.00 46.14 3.33 F
4352 6395 1.068055 CAGCAATCTTTGTGCCTGGAC 60.068 52.381 0.00 0.00 43.27 4.02 F
4665 6708 1.527034 ACGACTTTGTGAGCATGCAT 58.473 45.000 21.98 4.75 0.00 3.96 F
5304 7351 2.746904 TGTGGATAAATGCACCGAAGTG 59.253 45.455 11.45 0.00 46.89 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 3431 1.310216 GGAACAATCGGGGTTTCGGG 61.310 60.000 0.00 0.0 0.00 5.14 R
1653 3649 1.340502 TGGCACAGCATTATTTCCCGA 60.341 47.619 0.00 0.0 0.00 5.14 R
3392 5410 0.536006 CTGGCCCTAGCATACCAAGC 60.536 60.000 0.00 0.0 42.56 4.01 R
4641 6684 0.303493 TGCTCACAAAGTCGTTTCGC 59.697 50.000 0.00 0.0 0.00 4.70 R
5449 7511 0.966179 TAAGCCACAAGTCAGCTCGA 59.034 50.000 0.00 0.0 35.30 4.04 R
5467 7529 1.140852 CCGCATCAAGGGAATCCAGTA 59.859 52.381 0.09 0.0 34.83 2.74 R
6157 8227 1.489230 GGACCATATTTCGTGTCCCCT 59.511 52.381 0.00 0.0 41.14 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.428171 TGTAGTTTCTAACCGATCCCCG 59.572 50.000 0.00 0.00 38.18 5.73
57 58 4.477249 TCCCCGATACTTAACTCCCTAAG 58.523 47.826 0.00 0.00 35.40 2.18
58 59 4.168675 TCCCCGATACTTAACTCCCTAAGA 59.831 45.833 0.00 0.00 33.78 2.10
103 105 7.651704 GTGCAAATTTGGTTCAAACTACTACAT 59.348 33.333 19.47 0.00 36.13 2.29
162 164 9.469807 AACGAAGATTAGACTAGATTGCATAAG 57.530 33.333 0.00 0.00 0.00 1.73
200 202 2.457598 TGCTAATCGTTCTCCCAGTCT 58.542 47.619 0.00 0.00 0.00 3.24
218 220 2.009051 TCTGATTCGGTAAGCGTCGTA 58.991 47.619 0.00 0.00 0.00 3.43
224 226 0.026674 CGGTAAGCGTCGTATCGTCA 59.973 55.000 0.00 0.00 0.00 4.35
230 232 0.651042 GCGTCGTATCGTCAGAGTCG 60.651 60.000 0.00 0.00 0.00 4.18
239 241 1.004277 CGTCAGAGTCGTGGAGCAAC 61.004 60.000 0.00 0.00 0.00 4.17
267 269 2.750350 CTCCTTTGCCCCAGTCGT 59.250 61.111 0.00 0.00 0.00 4.34
315 317 3.693245 CGTGCTCCGTGTATCTGC 58.307 61.111 0.00 0.00 0.00 4.26
316 318 2.224217 CGTGCTCCGTGTATCTGCG 61.224 63.158 0.00 0.00 0.00 5.18
339 341 1.963338 GAGCTCCGCCATGTATGCC 60.963 63.158 0.87 0.00 0.00 4.40
344 346 2.588596 CGCCATGTATGCCTCGCA 60.589 61.111 0.00 0.00 44.86 5.10
392 394 2.419198 CTCCCGATCTTCCCGCAG 59.581 66.667 0.00 0.00 0.00 5.18
398 400 2.688666 ATCTTCCCGCAGCTCCCA 60.689 61.111 0.00 0.00 0.00 4.37
449 451 1.450531 AACTACGATAGGCCGTCGGG 61.451 60.000 28.79 23.36 43.06 5.14
459 461 2.264794 CCGTCGGGGAAGTTCAGG 59.735 66.667 2.34 0.00 38.47 3.86
507 509 3.119531 CCAACATAATGTGGCATTCGTGT 60.120 43.478 0.00 3.09 0.00 4.49
516 518 2.257353 GCATTCGTGTGCCTCCTTT 58.743 52.632 3.88 0.00 39.18 3.11
519 521 2.699954 CATTCGTGTGCCTCCTTTACT 58.300 47.619 0.00 0.00 0.00 2.24
521 523 0.320421 TCGTGTGCCTCCTTTACTGC 60.320 55.000 0.00 0.00 0.00 4.40
560 562 1.084370 CAAATCCTCTCGCGGGTGTC 61.084 60.000 5.57 0.00 0.00 3.67
597 599 4.567597 ACCCACGTCCCCCACTGA 62.568 66.667 0.00 0.00 0.00 3.41
604 606 2.611800 TCCCCCACTGATGCTGCT 60.612 61.111 0.00 0.00 0.00 4.24
605 607 2.439701 CCCCCACTGATGCTGCTG 60.440 66.667 0.00 0.00 0.00 4.41
623 625 0.892755 TGCACTCGAGGTATTTCGGT 59.107 50.000 18.41 0.00 40.83 4.69
629 631 0.738412 CGAGGTATTTCGGTTGCGGT 60.738 55.000 0.00 0.00 36.95 5.68
630 632 1.469595 CGAGGTATTTCGGTTGCGGTA 60.470 52.381 0.00 0.00 36.95 4.02
631 633 2.620242 GAGGTATTTCGGTTGCGGTAA 58.380 47.619 0.00 0.00 0.00 2.85
640 642 4.440181 TTGCGGTAACAGCAACGA 57.560 50.000 6.89 0.00 46.02 3.85
641 643 2.921374 TTGCGGTAACAGCAACGAT 58.079 47.368 6.89 0.00 46.02 3.73
651 653 0.674581 CAGCAACGATGAGAGGCCAA 60.675 55.000 5.01 0.00 0.00 4.52
654 656 0.250234 CAACGATGAGAGGCCAAGGA 59.750 55.000 5.01 0.00 0.00 3.36
686 688 3.909258 GACGCGGACGAAGGAAGCA 62.909 63.158 12.47 0.00 43.93 3.91
688 690 2.802667 CGCGGACGAAGGAAGCATG 61.803 63.158 0.00 0.00 43.93 4.06
695 697 1.298157 CGAAGGAAGCATGGTCGCAA 61.298 55.000 0.00 0.00 0.00 4.85
758 774 2.158726 GCAATAGGGATAAACGGTGGGA 60.159 50.000 0.00 0.00 0.00 4.37
794 830 4.671569 GCTATGCGGGAGGGCGAG 62.672 72.222 0.00 0.00 35.06 5.03
795 831 3.996124 CTATGCGGGAGGGCGAGG 61.996 72.222 0.00 0.00 35.06 4.63
796 832 4.533124 TATGCGGGAGGGCGAGGA 62.533 66.667 0.00 0.00 35.06 3.71
800 836 4.148825 CGGGAGGGCGAGGAAGTG 62.149 72.222 0.00 0.00 0.00 3.16
801 837 2.683933 GGGAGGGCGAGGAAGTGA 60.684 66.667 0.00 0.00 0.00 3.41
1457 3446 1.101049 CATCCCCGAAACCCCGATTG 61.101 60.000 0.00 0.00 0.00 2.67
1476 3465 5.519566 CGATTGTTCCTTCTCTCATTCTCTG 59.480 44.000 0.00 0.00 0.00 3.35
1480 3469 4.199432 TCCTTCTCTCATTCTCTGTTGC 57.801 45.455 0.00 0.00 0.00 4.17
1517 3506 5.335127 CATTGCCAAGCTCTATTTGTGTAC 58.665 41.667 0.00 0.00 0.00 2.90
1559 3555 3.354948 TGAGGATGCTGTTATGCTGTT 57.645 42.857 0.00 0.00 0.00 3.16
1573 3569 4.749245 ATGCTGTTTCTAGGTGTTTTCG 57.251 40.909 0.00 0.00 0.00 3.46
1579 3575 4.209703 TGTTTCTAGGTGTTTTCGCTAACG 59.790 41.667 0.00 0.00 42.01 3.18
1580 3576 2.950433 TCTAGGTGTTTTCGCTAACGG 58.050 47.619 0.00 0.00 40.63 4.44
1581 3577 2.297033 TCTAGGTGTTTTCGCTAACGGT 59.703 45.455 0.00 0.00 40.63 4.83
1595 3591 5.299028 TCGCTAACGGTATACTCCAATTGTA 59.701 40.000 4.43 0.00 40.63 2.41
1653 3649 3.778265 TGCTTCATTTTAGGCTTCCCTT 58.222 40.909 0.00 0.00 42.87 3.95
1655 3651 3.181496 GCTTCATTTTAGGCTTCCCTTCG 60.181 47.826 0.00 0.00 42.87 3.79
1816 3827 1.398041 CACCATGTAACACATCCTGCG 59.602 52.381 0.00 0.00 36.53 5.18
1822 3833 3.322369 TGTAACACATCCTGCGTACAAG 58.678 45.455 0.00 0.00 0.00 3.16
2021 4034 2.040278 TGCCTATTTCTGTGCAGGTTCT 59.960 45.455 0.00 0.00 0.00 3.01
2256 4269 5.816955 AAGAACACTCTCTTAGGCTCTTT 57.183 39.130 0.00 0.00 33.81 2.52
2634 4651 4.340950 AGGAACATTGTGTTTCCACGAAAT 59.659 37.500 8.37 0.00 41.28 2.17
3048 5065 0.745845 CCGAAGGCCTGGATCTTGTG 60.746 60.000 5.69 0.00 46.14 3.33
3203 5220 6.607198 ACACCATGGTTTATATTCTCCTTTGG 59.393 38.462 16.84 0.00 33.47 3.28
3326 5344 5.867174 GTGTTTTTCAGCCTACTGTGTTTTT 59.133 36.000 0.00 0.00 44.77 1.94
3392 5410 2.455674 TGCTGCCTGTAACAGTGTAG 57.544 50.000 0.00 0.00 37.47 2.74
3397 5415 2.076863 GCCTGTAACAGTGTAGCTTGG 58.923 52.381 0.00 0.00 0.00 3.61
3440 5458 9.740239 AAAGCATACTATTGTAATCAGCATTTG 57.260 29.630 0.00 0.00 31.80 2.32
3477 5495 7.490402 CCATTTGACCAATCTCTTGCTATTTTC 59.510 37.037 0.00 0.00 0.00 2.29
3503 5524 7.647715 CCTGTTGTTATACTTTTTGGAAGTGTG 59.352 37.037 1.89 0.00 0.00 3.82
4056 6096 9.999009 GGTACCTATTGTGCTTTTATTTTCTAC 57.001 33.333 4.06 0.00 0.00 2.59
4158 6198 7.667043 TTAAGCGGGCAGTAAATGAATATAG 57.333 36.000 0.00 0.00 0.00 1.31
4237 6277 5.452078 TTATAAACTTGCTGCTTTGTGCT 57.548 34.783 0.00 0.00 43.37 4.40
4352 6395 1.068055 CAGCAATCTTTGTGCCTGGAC 60.068 52.381 0.00 0.00 43.27 4.02
4378 6421 5.890334 TCAGTGTGGTTCTTTGTTTGATTC 58.110 37.500 0.00 0.00 0.00 2.52
4393 6436 2.367486 TGATTCAATGCCGCTCATTCA 58.633 42.857 0.00 0.00 43.21 2.57
4483 6526 7.733046 AAAATTCGAAACAAAAATTTGGTGC 57.267 28.000 0.00 1.47 42.34 5.01
4484 6527 6.428385 AATTCGAAACAAAAATTTGGTGCA 57.572 29.167 0.00 0.00 42.34 4.57
4485 6528 6.616774 ATTCGAAACAAAAATTTGGTGCAT 57.383 29.167 0.00 0.00 42.34 3.96
4486 6529 7.721286 ATTCGAAACAAAAATTTGGTGCATA 57.279 28.000 0.00 0.00 42.34 3.14
4487 6530 6.517914 TCGAAACAAAAATTTGGTGCATAC 57.482 33.333 10.38 0.00 42.34 2.39
4529 6572 3.486209 GCACGTCAAGTTTCGGAGAAAAA 60.486 43.478 0.00 0.00 45.90 1.94
4595 6638 7.328493 GTCTTGTGAAAAGCACTTTTTAACACT 59.672 33.333 18.87 0.00 45.58 3.55
4617 6660 5.124776 ACTGGATTTTGTCTTTTTCACACGA 59.875 36.000 0.00 0.00 0.00 4.35
4641 6684 4.839796 ACACATAACTTGTCGGTTTTTCG 58.160 39.130 0.00 0.00 36.00 3.46
4663 6706 2.310577 GAAACGACTTTGTGAGCATGC 58.689 47.619 10.51 10.51 0.00 4.06
4665 6708 1.527034 ACGACTTTGTGAGCATGCAT 58.473 45.000 21.98 4.75 0.00 3.96
4753 6796 4.616953 CACATTTTAAAAACCAGGAGCGT 58.383 39.130 4.44 0.00 0.00 5.07
4854 6901 6.493458 AGTTTAAGGGCATTTACAGACAATGT 59.507 34.615 0.00 0.00 46.45 2.71
5291 7338 4.142182 GCTTGCTGCCTTTTATGTGGATAA 60.142 41.667 0.00 0.00 35.15 1.75
5304 7351 2.746904 TGTGGATAAATGCACCGAAGTG 59.253 45.455 11.45 0.00 46.89 3.16
5449 7511 5.316987 CTGGTGAAAATTGGAGAACTACCT 58.683 41.667 0.00 0.00 0.00 3.08
5460 7522 2.750712 GAGAACTACCTCGAGCTGACTT 59.249 50.000 6.99 0.00 0.00 3.01
5467 7529 0.320247 CTCGAGCTGACTTGTGGCTT 60.320 55.000 0.00 0.00 36.37 4.35
5478 7540 2.290960 ACTTGTGGCTTACTGGATTCCC 60.291 50.000 0.00 0.00 0.00 3.97
5586 7653 3.383761 GGAAACTTTCAGGCACACATTG 58.616 45.455 3.93 0.00 0.00 2.82
5587 7654 3.383761 GAAACTTTCAGGCACACATTGG 58.616 45.455 0.00 0.00 0.00 3.16
5588 7655 2.071778 ACTTTCAGGCACACATTGGT 57.928 45.000 0.00 0.00 0.00 3.67
5589 7656 2.387757 ACTTTCAGGCACACATTGGTT 58.612 42.857 0.00 0.00 0.00 3.67
5616 7683 2.484770 GGTGTAGTGGTTGAACTGCTGA 60.485 50.000 0.00 0.00 34.26 4.26
5772 7839 9.436957 CAATATACACAGTTCCAATATACTCCC 57.563 37.037 0.00 0.00 0.00 4.30
5773 7840 8.974292 ATATACACAGTTCCAATATACTCCCT 57.026 34.615 0.00 0.00 0.00 4.20
5774 7841 7.691993 ATACACAGTTCCAATATACTCCCTT 57.308 36.000 0.00 0.00 0.00 3.95
5775 7842 5.990668 ACACAGTTCCAATATACTCCCTTC 58.009 41.667 0.00 0.00 0.00 3.46
5776 7843 5.050490 CACAGTTCCAATATACTCCCTTCG 58.950 45.833 0.00 0.00 0.00 3.79
5779 7846 6.113411 CAGTTCCAATATACTCCCTTCGTTT 58.887 40.000 0.00 0.00 0.00 3.60
5782 7849 7.343833 AGTTCCAATATACTCCCTTCGTTTCTA 59.656 37.037 0.00 0.00 0.00 2.10
5783 7850 7.664552 TCCAATATACTCCCTTCGTTTCTAA 57.335 36.000 0.00 0.00 0.00 2.10
5784 7851 8.081517 TCCAATATACTCCCTTCGTTTCTAAA 57.918 34.615 0.00 0.00 0.00 1.85
5785 7852 8.711170 TCCAATATACTCCCTTCGTTTCTAAAT 58.289 33.333 0.00 0.00 0.00 1.40
5792 7859 6.990939 ACTCCCTTCGTTTCTAAATATAAGCC 59.009 38.462 0.00 0.00 0.00 4.35
5793 7860 6.293698 TCCCTTCGTTTCTAAATATAAGCCC 58.706 40.000 0.00 0.00 0.00 5.19
5794 7861 6.100714 TCCCTTCGTTTCTAAATATAAGCCCT 59.899 38.462 0.00 0.00 0.00 5.19
5795 7862 6.771267 CCCTTCGTTTCTAAATATAAGCCCTT 59.229 38.462 0.00 0.00 0.00 3.95
5796 7863 7.284716 CCCTTCGTTTCTAAATATAAGCCCTTT 59.715 37.037 0.00 0.00 0.00 3.11
5797 7864 8.683615 CCTTCGTTTCTAAATATAAGCCCTTTT 58.316 33.333 0.00 0.00 0.00 2.27
5814 7881 9.920946 AAGCCCTTTTAGATATTTCAATACAGA 57.079 29.630 0.00 0.00 0.00 3.41
5815 7882 9.343539 AGCCCTTTTAGATATTTCAATACAGAC 57.656 33.333 0.00 0.00 0.00 3.51
5816 7883 9.343539 GCCCTTTTAGATATTTCAATACAGACT 57.656 33.333 0.00 0.00 0.00 3.24
5827 7894 8.818141 ATTTCAATACAGACTACATACGGATG 57.182 34.615 5.94 5.94 39.16 3.51
5829 7896 8.454570 TTCAATACAGACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
5830 7897 8.631480 TCAATACAGACTACATACGGATGTAT 57.369 34.615 20.64 11.04 45.42 2.29
5831 7898 8.727910 TCAATACAGACTACATACGGATGTATC 58.272 37.037 20.64 18.02 45.42 2.24
5832 7899 8.731605 CAATACAGACTACATACGGATGTATCT 58.268 37.037 20.64 19.66 45.42 1.98
5833 7900 6.804770 ACAGACTACATACGGATGTATCTC 57.195 41.667 20.64 16.76 45.42 2.75
5834 7901 6.296803 ACAGACTACATACGGATGTATCTCA 58.703 40.000 20.64 0.12 45.42 3.27
5835 7902 6.943146 ACAGACTACATACGGATGTATCTCAT 59.057 38.462 20.64 12.12 45.42 2.90
5836 7903 7.448777 ACAGACTACATACGGATGTATCTCATT 59.551 37.037 20.64 9.26 45.42 2.57
5837 7904 8.300286 CAGACTACATACGGATGTATCTCATTT 58.700 37.037 20.64 1.45 45.42 2.32
5838 7905 8.861086 AGACTACATACGGATGTATCTCATTTT 58.139 33.333 20.64 1.13 45.42 1.82
5839 7906 8.818141 ACTACATACGGATGTATCTCATTTTG 57.182 34.615 20.64 8.41 45.42 2.44
5840 7907 8.421784 ACTACATACGGATGTATCTCATTTTGT 58.578 33.333 20.64 9.03 45.42 2.83
5841 7908 9.261180 CTACATACGGATGTATCTCATTTTGTT 57.739 33.333 20.64 0.00 45.42 2.83
5842 7909 8.142994 ACATACGGATGTATCTCATTTTGTTC 57.857 34.615 12.79 0.00 44.77 3.18
5843 7910 7.768582 ACATACGGATGTATCTCATTTTGTTCA 59.231 33.333 12.79 0.00 44.77 3.18
5844 7911 8.777413 CATACGGATGTATCTCATTTTGTTCAT 58.223 33.333 0.00 0.00 39.28 2.57
5845 7912 9.996554 ATACGGATGTATCTCATTTTGTTCATA 57.003 29.630 0.00 0.00 36.56 2.15
5846 7913 8.908786 ACGGATGTATCTCATTTTGTTCATAT 57.091 30.769 0.00 0.00 36.83 1.78
5847 7914 8.777413 ACGGATGTATCTCATTTTGTTCATATG 58.223 33.333 0.00 0.00 36.83 1.78
5848 7915 7.747799 CGGATGTATCTCATTTTGTTCATATGC 59.252 37.037 0.00 0.00 36.83 3.14
5849 7916 8.570488 GGATGTATCTCATTTTGTTCATATGCA 58.430 33.333 0.00 0.00 36.83 3.96
5850 7917 9.608617 GATGTATCTCATTTTGTTCATATGCAG 57.391 33.333 0.00 0.00 36.83 4.41
5851 7918 8.510243 TGTATCTCATTTTGTTCATATGCAGT 57.490 30.769 0.00 0.00 0.00 4.40
5852 7919 8.959548 TGTATCTCATTTTGTTCATATGCAGTT 58.040 29.630 0.00 0.00 0.00 3.16
5853 7920 9.443283 GTATCTCATTTTGTTCATATGCAGTTC 57.557 33.333 0.00 0.00 0.00 3.01
5854 7921 7.451501 TCTCATTTTGTTCATATGCAGTTCA 57.548 32.000 0.00 0.00 0.00 3.18
5855 7922 8.058667 TCTCATTTTGTTCATATGCAGTTCAT 57.941 30.769 0.00 0.00 39.17 2.57
5856 7923 9.176460 TCTCATTTTGTTCATATGCAGTTCATA 57.824 29.630 0.00 0.00 41.52 2.15
5857 7924 9.961265 CTCATTTTGTTCATATGCAGTTCATAT 57.039 29.630 0.00 0.00 46.49 1.78
5864 7931 9.571810 TGTTCATATGCAGTTCATATTGAAAAC 57.428 29.630 0.00 0.00 43.91 2.43
5865 7932 9.793252 GTTCATATGCAGTTCATATTGAAAACT 57.207 29.630 0.00 0.00 43.91 2.66
5867 7934 9.399797 TCATATGCAGTTCATATTGAAAACTCT 57.600 29.630 0.00 0.00 43.91 3.24
5872 7939 9.897744 TGCAGTTCATATTGAAAACTCTAAAAG 57.102 29.630 0.00 0.00 38.22 2.27
5873 7940 9.346725 GCAGTTCATATTGAAAACTCTAAAAGG 57.653 33.333 0.00 0.00 38.22 3.11
5894 7961 6.926630 AGGTCTTATATTTAGGAGCAGAGG 57.073 41.667 7.13 0.00 35.14 3.69
5895 7962 5.782845 AGGTCTTATATTTAGGAGCAGAGGG 59.217 44.000 7.13 0.00 35.14 4.30
5896 7963 5.780793 GGTCTTATATTTAGGAGCAGAGGGA 59.219 44.000 0.70 0.00 33.47 4.20
6011 8080 4.211125 TCAAACCAGACAGCAAAATGGTA 58.789 39.130 4.38 0.00 45.21 3.25
6039 8108 1.394917 GTATTGAAGCACTGAGGCACG 59.605 52.381 0.00 0.00 35.83 5.34
6070 8139 8.842358 AACTCCTTATATCAACGAACAGAAAA 57.158 30.769 0.00 0.00 0.00 2.29
6117 8186 6.863126 ACAACAATTTCTTCCGAAATGACATC 59.137 34.615 1.50 0.00 46.36 3.06
6157 8227 2.357952 ACGTGATCGAGCTAGCACATAA 59.642 45.455 18.83 0.00 35.51 1.90
6302 8372 3.651904 AGCATAATCAGGAGGATTCAGCT 59.348 43.478 9.12 9.12 42.62 4.24
6530 8600 3.964688 TGTGGTAGGACTTCTCTTCAACA 59.035 43.478 0.00 0.00 0.00 3.33
6548 8618 3.213206 ACAGTCACCTGCAAGATTTGA 57.787 42.857 0.00 0.00 42.81 2.69
6581 8651 3.118149 AGGCATGAGTCATCTGCATGTTA 60.118 43.478 18.04 0.00 41.01 2.41
6649 8722 0.112995 TGATGGAAGTTGGCTGCCTT 59.887 50.000 21.03 5.72 41.30 4.35
6650 8723 1.260544 GATGGAAGTTGGCTGCCTTT 58.739 50.000 21.03 11.48 41.30 3.11
6651 8724 1.620323 GATGGAAGTTGGCTGCCTTTT 59.380 47.619 21.03 11.11 41.30 2.27
6652 8725 2.373335 TGGAAGTTGGCTGCCTTTTA 57.627 45.000 21.03 0.00 41.30 1.52
6653 8726 2.238521 TGGAAGTTGGCTGCCTTTTAG 58.761 47.619 21.03 0.00 41.30 1.85
6654 8727 2.158534 TGGAAGTTGGCTGCCTTTTAGA 60.159 45.455 21.03 0.00 41.30 2.10
6655 8728 2.489722 GGAAGTTGGCTGCCTTTTAGAG 59.510 50.000 21.03 0.00 37.46 2.43
6656 8729 2.959465 AGTTGGCTGCCTTTTAGAGT 57.041 45.000 21.03 0.00 0.00 3.24
6657 8730 4.324267 GAAGTTGGCTGCCTTTTAGAGTA 58.676 43.478 21.03 0.00 0.00 2.59
6658 8731 4.367039 AGTTGGCTGCCTTTTAGAGTAA 57.633 40.909 21.03 0.00 0.00 2.24
6659 8732 4.725490 AGTTGGCTGCCTTTTAGAGTAAA 58.275 39.130 21.03 0.00 0.00 2.01
6660 8733 4.762251 AGTTGGCTGCCTTTTAGAGTAAAG 59.238 41.667 21.03 0.00 35.39 1.85
6661 8734 3.081804 TGGCTGCCTTTTAGAGTAAAGC 58.918 45.455 21.03 0.00 34.51 3.51
6662 8735 2.096013 GGCTGCCTTTTAGAGTAAAGCG 59.904 50.000 12.43 0.00 34.51 4.68
6663 8736 3.000727 GCTGCCTTTTAGAGTAAAGCGA 58.999 45.455 0.00 0.00 34.51 4.93
6664 8737 3.435671 GCTGCCTTTTAGAGTAAAGCGAA 59.564 43.478 0.00 0.00 34.51 4.70
6665 8738 4.436183 GCTGCCTTTTAGAGTAAAGCGAAG 60.436 45.833 0.00 0.00 34.51 3.79
6666 8739 4.000988 TGCCTTTTAGAGTAAAGCGAAGG 58.999 43.478 0.00 0.00 34.51 3.46
6667 8740 3.181509 GCCTTTTAGAGTAAAGCGAAGGC 60.182 47.826 8.27 8.27 39.40 4.35
6680 8753 2.618053 GCGAAGGCTACACAACTATGT 58.382 47.619 0.00 0.00 36.78 2.29
6681 8754 2.603560 GCGAAGGCTACACAACTATGTC 59.396 50.000 0.00 0.00 35.01 3.06
6682 8755 3.187700 CGAAGGCTACACAACTATGTCC 58.812 50.000 0.00 0.00 37.82 4.02
6683 8756 3.368013 CGAAGGCTACACAACTATGTCCA 60.368 47.826 0.00 0.00 37.82 4.02
6684 8757 4.575885 GAAGGCTACACAACTATGTCCAA 58.424 43.478 0.00 0.00 37.82 3.53
6685 8758 4.634012 AGGCTACACAACTATGTCCAAA 57.366 40.909 0.00 0.00 37.82 3.28
6686 8759 4.579869 AGGCTACACAACTATGTCCAAAG 58.420 43.478 0.00 0.00 37.82 2.77
6687 8760 3.689649 GGCTACACAACTATGTCCAAAGG 59.310 47.826 0.00 0.00 37.82 3.11
6688 8761 4.324267 GCTACACAACTATGTCCAAAGGT 58.676 43.478 0.00 0.00 37.82 3.50
6689 8762 5.484715 GCTACACAACTATGTCCAAAGGTA 58.515 41.667 0.00 0.00 37.82 3.08
6690 8763 5.350640 GCTACACAACTATGTCCAAAGGTAC 59.649 44.000 0.00 0.00 37.82 3.34
6691 8764 5.298989 ACACAACTATGTCCAAAGGTACA 57.701 39.130 0.00 0.00 37.82 2.90
6692 8765 5.305585 ACACAACTATGTCCAAAGGTACAG 58.694 41.667 0.00 0.00 37.82 2.74
6693 8766 4.695455 CACAACTATGTCCAAAGGTACAGG 59.305 45.833 0.00 0.00 37.82 4.00
6694 8767 4.349930 ACAACTATGTCCAAAGGTACAGGT 59.650 41.667 0.00 0.00 33.41 4.00
6695 8768 5.544948 ACAACTATGTCCAAAGGTACAGGTA 59.455 40.000 0.00 0.00 33.41 3.08
6696 8769 6.043474 ACAACTATGTCCAAAGGTACAGGTAA 59.957 38.462 0.00 0.00 33.41 2.85
6697 8770 6.691255 ACTATGTCCAAAGGTACAGGTAAA 57.309 37.500 0.00 0.00 0.00 2.01
6698 8771 7.081857 ACTATGTCCAAAGGTACAGGTAAAA 57.918 36.000 0.00 0.00 0.00 1.52
6699 8772 7.696017 ACTATGTCCAAAGGTACAGGTAAAAT 58.304 34.615 0.00 0.00 0.00 1.82
6700 8773 8.828751 ACTATGTCCAAAGGTACAGGTAAAATA 58.171 33.333 0.00 0.00 0.00 1.40
6701 8774 9.675464 CTATGTCCAAAGGTACAGGTAAAATAA 57.325 33.333 0.00 0.00 0.00 1.40
6702 8775 8.943594 ATGTCCAAAGGTACAGGTAAAATAAA 57.056 30.769 0.00 0.00 0.00 1.40
6703 8776 8.168790 TGTCCAAAGGTACAGGTAAAATAAAC 57.831 34.615 0.00 0.00 0.00 2.01
6704 8777 7.231115 TGTCCAAAGGTACAGGTAAAATAAACC 59.769 37.037 0.00 0.00 37.27 3.27
6705 8778 6.720748 TCCAAAGGTACAGGTAAAATAAACCC 59.279 38.462 0.00 0.00 37.77 4.11
6706 8779 6.722590 CCAAAGGTACAGGTAAAATAAACCCT 59.277 38.462 0.00 0.00 37.77 4.34
6707 8780 7.233962 CCAAAGGTACAGGTAAAATAAACCCTT 59.766 37.037 0.00 0.00 37.77 3.95
6708 8781 9.299465 CAAAGGTACAGGTAAAATAAACCCTTA 57.701 33.333 0.00 0.00 37.77 2.69
6709 8782 9.880254 AAAGGTACAGGTAAAATAAACCCTTAA 57.120 29.630 0.00 0.00 37.77 1.85
6710 8783 9.880254 AAGGTACAGGTAAAATAAACCCTTAAA 57.120 29.630 0.00 0.00 37.77 1.52
6713 8786 9.992910 GTACAGGTAAAATAAACCCTTAAATCG 57.007 33.333 0.00 0.00 37.77 3.34
6714 8787 7.541162 ACAGGTAAAATAAACCCTTAAATCGC 58.459 34.615 0.00 0.00 37.77 4.58
6715 8788 7.177041 ACAGGTAAAATAAACCCTTAAATCGCA 59.823 33.333 0.00 0.00 37.77 5.10
6716 8789 8.030106 CAGGTAAAATAAACCCTTAAATCGCAA 58.970 33.333 0.00 0.00 37.77 4.85
6717 8790 8.586744 AGGTAAAATAAACCCTTAAATCGCAAA 58.413 29.630 0.00 0.00 37.77 3.68
6718 8791 9.205719 GGTAAAATAAACCCTTAAATCGCAAAA 57.794 29.630 0.00 0.00 0.00 2.44
6720 8793 6.937886 AATAAACCCTTAAATCGCAAAACG 57.062 33.333 0.00 0.00 45.62 3.60
6733 8806 3.609103 GCAAAACGATCAGTCAACAGT 57.391 42.857 0.00 0.00 0.00 3.55
6734 8807 3.952535 GCAAAACGATCAGTCAACAGTT 58.047 40.909 0.00 0.00 0.00 3.16
6735 8808 4.351192 GCAAAACGATCAGTCAACAGTTT 58.649 39.130 0.00 0.00 33.86 2.66
6736 8809 4.798387 GCAAAACGATCAGTCAACAGTTTT 59.202 37.500 0.00 0.00 40.86 2.43
6737 8810 5.052370 GCAAAACGATCAGTCAACAGTTTTC 60.052 40.000 0.00 0.00 39.01 2.29
6738 8811 5.811399 AAACGATCAGTCAACAGTTTTCA 57.189 34.783 0.00 0.00 0.00 2.69
6739 8812 4.795970 ACGATCAGTCAACAGTTTTCAC 57.204 40.909 0.00 0.00 0.00 3.18
6740 8813 4.188462 ACGATCAGTCAACAGTTTTCACA 58.812 39.130 0.00 0.00 0.00 3.58
6741 8814 4.816385 ACGATCAGTCAACAGTTTTCACAT 59.184 37.500 0.00 0.00 0.00 3.21
6742 8815 5.296780 ACGATCAGTCAACAGTTTTCACATT 59.703 36.000 0.00 0.00 0.00 2.71
6743 8816 5.848036 CGATCAGTCAACAGTTTTCACATTC 59.152 40.000 0.00 0.00 0.00 2.67
6744 8817 5.499139 TCAGTCAACAGTTTTCACATTCC 57.501 39.130 0.00 0.00 0.00 3.01
6745 8818 4.035091 TCAGTCAACAGTTTTCACATTCCG 59.965 41.667 0.00 0.00 0.00 4.30
6746 8819 4.035091 CAGTCAACAGTTTTCACATTCCGA 59.965 41.667 0.00 0.00 0.00 4.55
6747 8820 4.638421 AGTCAACAGTTTTCACATTCCGAA 59.362 37.500 0.00 0.00 0.00 4.30
6748 8821 5.124776 AGTCAACAGTTTTCACATTCCGAAA 59.875 36.000 0.00 0.00 0.00 3.46
6749 8822 5.977129 GTCAACAGTTTTCACATTCCGAAAT 59.023 36.000 0.00 0.00 32.66 2.17
6750 8823 7.012894 AGTCAACAGTTTTCACATTCCGAAATA 59.987 33.333 0.00 0.00 32.66 1.40
6751 8824 7.807907 GTCAACAGTTTTCACATTCCGAAATAT 59.192 33.333 0.00 0.00 32.66 1.28
6752 8825 8.020819 TCAACAGTTTTCACATTCCGAAATATC 58.979 33.333 0.00 0.00 32.66 1.63
6753 8826 7.447374 ACAGTTTTCACATTCCGAAATATCA 57.553 32.000 0.00 0.00 32.66 2.15
6754 8827 7.881142 ACAGTTTTCACATTCCGAAATATCAA 58.119 30.769 0.00 0.00 32.66 2.57
6755 8828 8.522830 ACAGTTTTCACATTCCGAAATATCAAT 58.477 29.630 0.00 0.00 32.66 2.57
6756 8829 9.357652 CAGTTTTCACATTCCGAAATATCAATT 57.642 29.630 0.00 0.00 32.66 2.32
6757 8830 9.357652 AGTTTTCACATTCCGAAATATCAATTG 57.642 29.630 0.00 0.00 32.66 2.32
6758 8831 9.139174 GTTTTCACATTCCGAAATATCAATTGT 57.861 29.630 5.13 0.00 32.66 2.71
6759 8832 9.703892 TTTTCACATTCCGAAATATCAATTGTT 57.296 25.926 5.13 0.00 32.66 2.83
6760 8833 9.703892 TTTCACATTCCGAAATATCAATTGTTT 57.296 25.926 5.13 0.00 0.00 2.83
6761 8834 8.686397 TCACATTCCGAAATATCAATTGTTTG 57.314 30.769 5.13 0.00 0.00 2.93
6762 8835 8.303156 TCACATTCCGAAATATCAATTGTTTGT 58.697 29.630 5.13 0.00 34.32 2.83
6763 8836 8.586273 CACATTCCGAAATATCAATTGTTTGTC 58.414 33.333 5.13 0.00 34.32 3.18
6764 8837 7.759433 ACATTCCGAAATATCAATTGTTTGTCC 59.241 33.333 5.13 0.00 34.32 4.02
6765 8838 7.461182 TTCCGAAATATCAATTGTTTGTCCT 57.539 32.000 5.13 0.00 34.32 3.85
6766 8839 7.461182 TCCGAAATATCAATTGTTTGTCCTT 57.539 32.000 5.13 0.00 34.32 3.36
6767 8840 7.535139 TCCGAAATATCAATTGTTTGTCCTTC 58.465 34.615 5.13 0.92 34.32 3.46
6768 8841 7.175816 TCCGAAATATCAATTGTTTGTCCTTCA 59.824 33.333 5.13 0.00 34.32 3.02
6769 8842 7.812191 CCGAAATATCAATTGTTTGTCCTTCAA 59.188 33.333 5.13 0.00 34.32 2.69
6770 8843 9.357652 CGAAATATCAATTGTTTGTCCTTCAAT 57.642 29.630 5.13 0.00 35.84 2.57
6774 8847 5.987777 CAATTGTTTGTCCTTCAATTGCA 57.012 34.783 13.96 0.00 45.61 4.08
6775 8848 6.360844 CAATTGTTTGTCCTTCAATTGCAA 57.639 33.333 0.00 0.00 45.61 4.08
6776 8849 6.783162 CAATTGTTTGTCCTTCAATTGCAAA 58.217 32.000 1.71 2.44 45.61 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.447596 CGGGGATCGGTTAGAAACTACAGTTTA 62.448 44.444 7.32 0.00 40.57 2.01
22 23 1.856629 TCGGGGATCGGTTAGAAACT 58.143 50.000 0.00 0.00 39.77 2.66
57 58 5.006165 TGCACCGAATTTGTGTTGATTTTTC 59.994 36.000 9.84 0.00 36.11 2.29
58 59 4.872691 TGCACCGAATTTGTGTTGATTTTT 59.127 33.333 9.84 0.00 36.11 1.94
67 69 3.559242 ACCAAATTTGCACCGAATTTGTG 59.441 39.130 23.61 19.03 46.00 3.33
138 140 9.684448 TTCTTATGCAATCTAGTCTAATCTTCG 57.316 33.333 0.00 0.00 0.00 3.79
169 171 8.671028 GGGAGAACGATTAGCAATTAGTTTTAA 58.329 33.333 0.00 0.00 0.00 1.52
178 180 3.452627 AGACTGGGAGAACGATTAGCAAT 59.547 43.478 0.00 0.00 0.00 3.56
180 182 2.166459 CAGACTGGGAGAACGATTAGCA 59.834 50.000 0.00 0.00 0.00 3.49
189 191 1.938585 ACCGAATCAGACTGGGAGAA 58.061 50.000 1.81 0.00 0.00 2.87
200 202 2.600556 CGATACGACGCTTACCGAATCA 60.601 50.000 0.00 0.00 41.02 2.57
218 220 0.960861 TGCTCCACGACTCTGACGAT 60.961 55.000 0.00 0.00 34.70 3.73
224 226 2.143594 GACCGTTGCTCCACGACTCT 62.144 60.000 5.39 0.00 43.15 3.24
230 232 0.517316 GTCATTGACCGTTGCTCCAC 59.483 55.000 5.44 0.00 0.00 4.02
254 256 2.138595 AGTACACGACTGGGGCAAA 58.861 52.632 0.00 0.00 36.87 3.68
267 269 1.635844 CGCCGAATGTAAGCAGTACA 58.364 50.000 0.00 3.08 46.72 2.90
307 309 4.221422 GCTCCGCCCGCAGATACA 62.221 66.667 0.00 0.00 0.00 2.29
369 371 2.110006 GAAGATCGGGAGGCCAGC 59.890 66.667 5.01 0.00 0.00 4.85
372 374 3.930012 CGGGAAGATCGGGAGGCC 61.930 72.222 0.00 0.00 0.00 5.19
419 421 1.956629 ATCGTAGTTGGTGCCCCTCG 61.957 60.000 0.00 0.00 0.00 4.63
422 424 0.106149 CCTATCGTAGTTGGTGCCCC 59.894 60.000 0.00 0.00 0.00 5.80
427 429 0.743097 GACGGCCTATCGTAGTTGGT 59.257 55.000 0.00 0.00 43.96 3.67
438 440 2.284112 AACTTCCCCGACGGCCTA 60.284 61.111 8.86 0.00 0.00 3.93
449 451 0.310854 CAACAACCGCCTGAACTTCC 59.689 55.000 0.00 0.00 0.00 3.46
476 478 4.335416 CCACATTATGTTGGTTCACCTCT 58.665 43.478 0.00 0.00 36.82 3.69
481 483 4.380339 CGAATGCCACATTATGTTGGTTCA 60.380 41.667 12.76 6.30 0.00 3.18
483 485 3.509575 ACGAATGCCACATTATGTTGGTT 59.490 39.130 12.76 3.79 0.00 3.67
487 489 3.673052 GCACACGAATGCCACATTATGTT 60.673 43.478 0.00 0.00 39.86 2.71
507 509 3.800188 TCCGCAGTAAAGGAGGCA 58.200 55.556 0.00 0.00 31.95 4.75
516 518 1.379977 CTCCTCCCACTCCGCAGTA 60.380 63.158 0.00 0.00 0.00 2.74
521 523 2.317149 GATTGGCTCCTCCCACTCCG 62.317 65.000 0.00 0.00 33.82 4.63
566 568 0.956633 GTGGGTCGCGGATATCACTA 59.043 55.000 6.13 0.00 0.00 2.74
604 606 0.892755 ACCGAAATACCTCGAGTGCA 59.107 50.000 12.31 0.00 41.44 4.57
605 607 1.659098 CAACCGAAATACCTCGAGTGC 59.341 52.381 12.31 0.00 41.44 4.40
623 625 0.515127 CATCGTTGCTGTTACCGCAA 59.485 50.000 10.00 10.00 44.36 4.85
629 631 1.405526 GGCCTCTCATCGTTGCTGTTA 60.406 52.381 0.00 0.00 0.00 2.41
630 632 0.674895 GGCCTCTCATCGTTGCTGTT 60.675 55.000 0.00 0.00 0.00 3.16
631 633 1.078848 GGCCTCTCATCGTTGCTGT 60.079 57.895 0.00 0.00 0.00 4.40
640 642 1.147824 CGCATCCTTGGCCTCTCAT 59.852 57.895 3.32 0.00 0.00 2.90
641 643 2.586245 CGCATCCTTGGCCTCTCA 59.414 61.111 3.32 0.00 0.00 3.27
676 678 1.298157 TTGCGACCATGCTTCCTTCG 61.298 55.000 0.00 0.00 35.36 3.79
678 680 0.036732 TCTTGCGACCATGCTTCCTT 59.963 50.000 0.00 0.00 35.36 3.36
686 688 0.467384 CATCCTCCTCTTGCGACCAT 59.533 55.000 0.00 0.00 0.00 3.55
688 690 1.522580 GCATCCTCCTCTTGCGACC 60.523 63.158 0.00 0.00 0.00 4.79
732 748 3.181448 ACCGTTTATCCCTATTGCGGATT 60.181 43.478 7.08 0.00 40.66 3.01
740 756 2.105993 GCTTCCCACCGTTTATCCCTAT 59.894 50.000 0.00 0.00 0.00 2.57
791 827 4.796231 CCCGCGGTCACTTCCTCG 62.796 72.222 26.12 0.00 35.76 4.63
792 828 3.692406 ACCCGCGGTCACTTCCTC 61.692 66.667 26.12 0.00 0.00 3.71
871 2860 1.153168 AGACCAGCACGCTGTGTTT 60.153 52.632 17.31 7.82 42.15 2.83
872 2861 1.889105 CAGACCAGCACGCTGTGTT 60.889 57.895 17.31 1.81 42.15 3.32
1442 3431 1.310216 GGAACAATCGGGGTTTCGGG 61.310 60.000 0.00 0.00 0.00 5.14
1457 3446 4.391523 GCAACAGAGAATGAGAGAAGGAAC 59.608 45.833 0.00 0.00 0.00 3.62
1476 3465 1.527034 TGCAGGAACAGATCAGCAAC 58.473 50.000 0.00 0.00 37.57 4.17
1480 3469 1.404391 GGCAATGCAGGAACAGATCAG 59.596 52.381 7.79 0.00 0.00 2.90
1528 3517 9.609346 CATAACAGCATCCTCATATAATCATCA 57.391 33.333 0.00 0.00 0.00 3.07
1529 3518 8.557864 GCATAACAGCATCCTCATATAATCATC 58.442 37.037 0.00 0.00 0.00 2.92
1532 3521 7.551974 ACAGCATAACAGCATCCTCATATAATC 59.448 37.037 0.00 0.00 36.85 1.75
1559 3555 3.243839 ACCGTTAGCGAAAACACCTAGAA 60.244 43.478 0.00 0.00 41.33 2.10
1573 3569 8.458212 GTATACAATTGGAGTATACCGTTAGC 57.542 38.462 10.83 0.00 44.15 3.09
1595 3591 2.036387 TGCCACCGTGTAGCATAGTAT 58.964 47.619 0.00 0.00 0.00 2.12
1600 3596 2.638480 ATATTGCCACCGTGTAGCAT 57.362 45.000 3.66 0.00 36.20 3.79
1653 3649 1.340502 TGGCACAGCATTATTTCCCGA 60.341 47.619 0.00 0.00 0.00 5.14
1731 3728 8.876275 TTTGTTAACTACACAAGATACTCGTT 57.124 30.769 7.22 0.00 36.21 3.85
1733 3730 8.975439 ACTTTTGTTAACTACACAAGATACTCG 58.025 33.333 7.22 0.00 43.93 4.18
1751 3762 4.081752 TGCACATCCACAGAAACTTTTGTT 60.082 37.500 0.00 0.00 45.94 2.83
1837 3848 4.321718 CTCAGTCTGAACATGGTTGTCAT 58.678 43.478 3.67 0.00 34.06 3.06
1959 3970 7.490962 TGTGTTATCGTCAGACTCAATTTTT 57.509 32.000 0.00 0.00 0.00 1.94
2163 4176 7.435192 AGTCTGCAAAGCAAAGTTTATTACAAC 59.565 33.333 0.00 0.00 38.41 3.32
2256 4269 6.127026 ACACTGCAAAGTTTTGGGGTTTATAA 60.127 34.615 6.72 0.00 38.57 0.98
2359 4374 6.998258 TTACTTCAAAGTACTACGCAGAAC 57.002 37.500 0.00 0.00 40.95 3.01
3048 5065 3.370366 CAGCTCTATCTATTGCCGCAATC 59.630 47.826 21.74 5.55 35.54 2.67
3203 5220 7.880195 AGTTATGTAGATGCCCAAGATGTTATC 59.120 37.037 0.00 0.00 0.00 1.75
3326 5344 3.016031 TGCAACACAAAGAAGAAGCTGA 58.984 40.909 0.00 0.00 0.00 4.26
3392 5410 0.536006 CTGGCCCTAGCATACCAAGC 60.536 60.000 0.00 0.00 42.56 4.01
3397 5415 2.879026 GCTTTAACTGGCCCTAGCATAC 59.121 50.000 0.00 0.00 42.56 2.39
3440 5458 1.404583 GGTCAAATGGTGCCTGATTGC 60.405 52.381 0.00 0.00 0.00 3.56
3477 5495 7.647715 CACACTTCCAAAAAGTATAACAACAGG 59.352 37.037 0.00 0.00 0.00 4.00
3503 5524 3.049912 GTTTTCCATGTTTCAAGGTCGC 58.950 45.455 0.00 0.00 0.00 5.19
4056 6096 2.935201 GCATGAGCTCCTGACAGTAAAG 59.065 50.000 21.58 0.00 37.91 1.85
4158 6198 1.261097 GAGAGTAAGAGCGTCGCAAC 58.739 55.000 21.09 12.87 0.00 4.17
4237 6277 0.611618 TTCGGCGGTCCCAGTAACTA 60.612 55.000 7.21 0.00 0.00 2.24
4378 6421 2.925578 TTTCTGAATGAGCGGCATTG 57.074 45.000 11.73 0.81 46.90 2.82
4393 6436 2.353011 CCATGTGCCAAAGCGAATTTCT 60.353 45.455 0.00 0.00 44.31 2.52
4465 6508 6.279227 TGTATGCACCAAATTTTTGTTTCG 57.721 33.333 0.00 0.00 36.45 3.46
4483 6526 7.329226 TGCACACATATAATGTCGAGATGTATG 59.671 37.037 18.69 18.69 42.70 2.39
4484 6527 7.329471 GTGCACACATATAATGTCGAGATGTAT 59.671 37.037 13.17 0.00 42.70 2.29
4485 6528 6.640907 GTGCACACATATAATGTCGAGATGTA 59.359 38.462 13.17 0.00 42.70 2.29
4486 6529 5.463392 GTGCACACATATAATGTCGAGATGT 59.537 40.000 13.17 0.00 42.70 3.06
4487 6530 5.387752 CGTGCACACATATAATGTCGAGATG 60.388 44.000 18.64 0.00 42.70 2.90
4595 6638 5.355630 TCTCGTGTGAAAAAGACAAAATCCA 59.644 36.000 0.00 0.00 0.00 3.41
4617 6660 5.277154 CGAAAAACCGACAAGTTATGTGTCT 60.277 40.000 3.34 0.00 44.12 3.41
4641 6684 0.303493 TGCTCACAAAGTCGTTTCGC 59.697 50.000 0.00 0.00 0.00 4.70
4663 6706 3.482472 GGCGCGTACATCTCGATATTATG 59.518 47.826 8.43 0.00 0.00 1.90
4665 6708 2.485038 TGGCGCGTACATCTCGATATTA 59.515 45.455 8.43 0.00 0.00 0.98
4724 6767 8.655651 TCCTGGTTTTTAAAATGTGCTTTAAG 57.344 30.769 0.55 0.00 33.48 1.85
4730 6773 3.428534 CGCTCCTGGTTTTTAAAATGTGC 59.571 43.478 0.55 1.48 0.00 4.57
4753 6796 4.560743 TTGGCACACAGGAGCGCA 62.561 61.111 11.47 0.00 39.29 6.09
4854 6901 5.907866 TCGTGAATTCAGGTACTACATCA 57.092 39.130 23.46 2.81 36.02 3.07
4945 6992 4.213564 AGAATCAAGGAGGCAAGTACTG 57.786 45.455 0.00 0.00 0.00 2.74
5304 7351 9.477484 CATATGGTACTATGACTTTAGACCAAC 57.523 37.037 1.31 0.00 35.24 3.77
5449 7511 0.966179 TAAGCCACAAGTCAGCTCGA 59.034 50.000 0.00 0.00 35.30 4.04
5460 7522 1.668826 AGGGAATCCAGTAAGCCACA 58.331 50.000 0.09 0.00 34.83 4.17
5467 7529 1.140852 CCGCATCAAGGGAATCCAGTA 59.859 52.381 0.09 0.00 34.83 2.74
5478 7540 4.856801 CCCCCGGACCGCATCAAG 62.857 72.222 8.86 0.00 0.00 3.02
5497 7559 5.462068 GCACAAAAACATTTCTACAGAACCC 59.538 40.000 0.00 0.00 33.13 4.11
5498 7560 6.198966 CAGCACAAAAACATTTCTACAGAACC 59.801 38.462 0.00 0.00 33.13 3.62
5586 7653 4.964593 TCAACCACTACACCTAAGAAACC 58.035 43.478 0.00 0.00 0.00 3.27
5587 7654 6.018180 CAGTTCAACCACTACACCTAAGAAAC 60.018 42.308 0.00 0.00 0.00 2.78
5588 7655 6.053005 CAGTTCAACCACTACACCTAAGAAA 58.947 40.000 0.00 0.00 0.00 2.52
5589 7656 5.607477 CAGTTCAACCACTACACCTAAGAA 58.393 41.667 0.00 0.00 0.00 2.52
5616 7683 7.172361 GCTCAACATCTCTCAAAAGTAAAGTCT 59.828 37.037 0.00 0.00 0.00 3.24
5674 7741 3.490439 TGTGCACGATCCATTCCATAT 57.510 42.857 13.13 0.00 0.00 1.78
5765 7832 9.708092 GCTTATATTTAGAAACGAAGGGAGTAT 57.292 33.333 0.00 0.00 0.00 2.12
5788 7855 9.920946 TCTGTATTGAAATATCTAAAAGGGCTT 57.079 29.630 0.00 0.00 0.00 4.35
5789 7856 9.343539 GTCTGTATTGAAATATCTAAAAGGGCT 57.656 33.333 0.00 0.00 0.00 5.19
5790 7857 9.343539 AGTCTGTATTGAAATATCTAAAAGGGC 57.656 33.333 0.00 0.00 0.00 5.19
5801 7868 9.908152 CATCCGTATGTAGTCTGTATTGAAATA 57.092 33.333 0.00 0.00 0.00 1.40
5802 7869 8.421784 ACATCCGTATGTAGTCTGTATTGAAAT 58.578 33.333 0.00 0.00 44.66 2.17
5803 7870 7.778083 ACATCCGTATGTAGTCTGTATTGAAA 58.222 34.615 0.00 0.00 44.66 2.69
5804 7871 7.342769 ACATCCGTATGTAGTCTGTATTGAA 57.657 36.000 0.00 0.00 44.66 2.69
5805 7872 6.954487 ACATCCGTATGTAGTCTGTATTGA 57.046 37.500 0.00 0.00 44.66 2.57
5818 7885 8.141835 TGAACAAAATGAGATACATCCGTATG 57.858 34.615 0.00 0.00 38.48 2.39
5819 7886 8.908786 ATGAACAAAATGAGATACATCCGTAT 57.091 30.769 0.00 0.00 41.16 3.06
5820 7887 9.996554 ATATGAACAAAATGAGATACATCCGTA 57.003 29.630 0.00 0.00 38.38 4.02
5821 7888 8.777413 CATATGAACAAAATGAGATACATCCGT 58.223 33.333 0.00 0.00 38.38 4.69
5822 7889 7.747799 GCATATGAACAAAATGAGATACATCCG 59.252 37.037 6.97 0.00 38.38 4.18
5823 7890 8.570488 TGCATATGAACAAAATGAGATACATCC 58.430 33.333 6.97 0.00 38.38 3.51
5824 7891 9.608617 CTGCATATGAACAAAATGAGATACATC 57.391 33.333 6.97 0.00 38.38 3.06
5825 7892 9.128404 ACTGCATATGAACAAAATGAGATACAT 57.872 29.630 6.97 0.00 41.45 2.29
5826 7893 8.510243 ACTGCATATGAACAAAATGAGATACA 57.490 30.769 6.97 0.00 0.00 2.29
5827 7894 9.443283 GAACTGCATATGAACAAAATGAGATAC 57.557 33.333 6.97 0.00 0.00 2.24
5828 7895 9.176460 TGAACTGCATATGAACAAAATGAGATA 57.824 29.630 6.97 0.00 0.00 1.98
5829 7896 8.058667 TGAACTGCATATGAACAAAATGAGAT 57.941 30.769 6.97 0.00 0.00 2.75
5830 7897 7.451501 TGAACTGCATATGAACAAAATGAGA 57.548 32.000 6.97 0.00 0.00 3.27
5831 7898 9.961265 ATATGAACTGCATATGAACAAAATGAG 57.039 29.630 6.97 0.00 46.01 2.90
5838 7905 9.571810 GTTTTCAATATGAACTGCATATGAACA 57.428 29.630 6.97 0.00 46.84 3.18
5839 7906 9.793252 AGTTTTCAATATGAACTGCATATGAAC 57.207 29.630 6.97 0.00 46.84 3.18
5841 7908 9.399797 AGAGTTTTCAATATGAACTGCATATGA 57.600 29.630 6.97 0.00 46.84 2.15
5846 7913 9.897744 CTTTTAGAGTTTTCAATATGAACTGCA 57.102 29.630 0.00 0.00 35.89 4.41
5847 7914 9.346725 CCTTTTAGAGTTTTCAATATGAACTGC 57.653 33.333 0.00 0.00 35.89 4.40
5868 7935 8.214364 CCTCTGCTCCTAAATATAAGACCTTTT 58.786 37.037 0.00 0.00 0.00 2.27
5869 7936 7.202139 CCCTCTGCTCCTAAATATAAGACCTTT 60.202 40.741 0.00 0.00 0.00 3.11
5870 7937 6.271159 CCCTCTGCTCCTAAATATAAGACCTT 59.729 42.308 0.00 0.00 0.00 3.50
5871 7938 5.782845 CCCTCTGCTCCTAAATATAAGACCT 59.217 44.000 0.00 0.00 0.00 3.85
5872 7939 5.780793 TCCCTCTGCTCCTAAATATAAGACC 59.219 44.000 0.00 0.00 0.00 3.85
5873 7940 6.495526 ACTCCCTCTGCTCCTAAATATAAGAC 59.504 42.308 0.00 0.00 0.00 3.01
5874 7941 6.625267 ACTCCCTCTGCTCCTAAATATAAGA 58.375 40.000 0.00 0.00 0.00 2.10
5875 7942 6.926630 ACTCCCTCTGCTCCTAAATATAAG 57.073 41.667 0.00 0.00 0.00 1.73
5876 7943 7.536625 ACTACTCCCTCTGCTCCTAAATATAA 58.463 38.462 0.00 0.00 0.00 0.98
5877 7944 7.104974 ACTACTCCCTCTGCTCCTAAATATA 57.895 40.000 0.00 0.00 0.00 0.86
5878 7945 5.971493 ACTACTCCCTCTGCTCCTAAATAT 58.029 41.667 0.00 0.00 0.00 1.28
5879 7946 5.405063 ACTACTCCCTCTGCTCCTAAATA 57.595 43.478 0.00 0.00 0.00 1.40
5880 7947 4.273300 ACTACTCCCTCTGCTCCTAAAT 57.727 45.455 0.00 0.00 0.00 1.40
5881 7948 3.759815 ACTACTCCCTCTGCTCCTAAA 57.240 47.619 0.00 0.00 0.00 1.85
5882 7949 3.759815 AACTACTCCCTCTGCTCCTAA 57.240 47.619 0.00 0.00 0.00 2.69
5883 7950 3.787013 ACTAACTACTCCCTCTGCTCCTA 59.213 47.826 0.00 0.00 0.00 2.94
5884 7951 2.583566 ACTAACTACTCCCTCTGCTCCT 59.416 50.000 0.00 0.00 0.00 3.69
5885 7952 2.953648 GACTAACTACTCCCTCTGCTCC 59.046 54.545 0.00 0.00 0.00 4.70
5886 7953 2.953648 GGACTAACTACTCCCTCTGCTC 59.046 54.545 0.00 0.00 0.00 4.26
5887 7954 2.312140 TGGACTAACTACTCCCTCTGCT 59.688 50.000 0.00 0.00 0.00 4.24
5888 7955 2.736347 TGGACTAACTACTCCCTCTGC 58.264 52.381 0.00 0.00 0.00 4.26
5889 7956 4.773149 ACTTTGGACTAACTACTCCCTCTG 59.227 45.833 0.00 0.00 0.00 3.35
5890 7957 4.773149 CACTTTGGACTAACTACTCCCTCT 59.227 45.833 0.00 0.00 0.00 3.69
5891 7958 4.527427 ACACTTTGGACTAACTACTCCCTC 59.473 45.833 0.00 0.00 0.00 4.30
5892 7959 4.490706 ACACTTTGGACTAACTACTCCCT 58.509 43.478 0.00 0.00 0.00 4.20
5893 7960 4.886496 ACACTTTGGACTAACTACTCCC 57.114 45.455 0.00 0.00 0.00 4.30
5894 7961 6.053650 ACAAACACTTTGGACTAACTACTCC 58.946 40.000 0.12 0.00 44.81 3.85
5895 7962 7.494952 AGAACAAACACTTTGGACTAACTACTC 59.505 37.037 0.12 0.00 44.81 2.59
5896 7963 7.336396 AGAACAAACACTTTGGACTAACTACT 58.664 34.615 0.12 0.00 44.81 2.57
5938 8005 8.870116 TCTACCATATTAATAAGCTGAGCTCAA 58.130 33.333 18.85 2.60 38.25 3.02
6011 8080 4.582869 TCAGTGCTTCAATACTTCAGCAT 58.417 39.130 0.00 0.00 43.91 3.79
6023 8092 2.666190 GCGTGCCTCAGTGCTTCA 60.666 61.111 0.00 0.00 0.00 3.02
6039 8108 6.903883 TCGTTGATATAAGGAGTTCTTTGC 57.096 37.500 0.00 0.00 36.93 3.68
6070 8139 3.631686 TGCATCAAGTACTGTGTGCTTTT 59.368 39.130 20.45 0.00 36.42 2.27
6117 8186 2.287547 CGTTGTTGAACCATGGAGTTGG 60.288 50.000 21.47 0.00 42.82 3.77
6157 8227 1.489230 GGACCATATTTCGTGTCCCCT 59.511 52.381 0.00 0.00 41.14 4.79
6530 8600 6.265196 TGTTAAATCAAATCTTGCAGGTGACT 59.735 34.615 0.00 0.00 46.44 3.41
6548 8618 7.281774 CAGATGACTCATGCCTAGTTGTTAAAT 59.718 37.037 0.00 0.00 0.00 1.40
6581 8651 7.633018 TTCAGTTATATCCTAAAGCCTCCAT 57.367 36.000 0.00 0.00 0.00 3.41
6649 8722 5.166398 GTGTAGCCTTCGCTTTACTCTAAA 58.834 41.667 0.00 0.00 45.55 1.85
6650 8723 4.219070 TGTGTAGCCTTCGCTTTACTCTAA 59.781 41.667 0.00 0.00 45.55 2.10
6651 8724 3.760151 TGTGTAGCCTTCGCTTTACTCTA 59.240 43.478 0.00 0.00 45.55 2.43
6652 8725 2.561419 TGTGTAGCCTTCGCTTTACTCT 59.439 45.455 0.00 0.00 45.55 3.24
6653 8726 2.955614 TGTGTAGCCTTCGCTTTACTC 58.044 47.619 0.00 0.00 45.55 2.59
6654 8727 3.064931 GTTGTGTAGCCTTCGCTTTACT 58.935 45.455 0.00 0.00 45.55 2.24
6655 8728 3.064931 AGTTGTGTAGCCTTCGCTTTAC 58.935 45.455 0.00 0.00 45.55 2.01
6656 8729 3.396260 AGTTGTGTAGCCTTCGCTTTA 57.604 42.857 0.00 0.00 45.55 1.85
6657 8730 2.256117 AGTTGTGTAGCCTTCGCTTT 57.744 45.000 0.00 0.00 45.55 3.51
6658 8731 3.262420 CATAGTTGTGTAGCCTTCGCTT 58.738 45.455 0.00 0.00 45.55 4.68
6659 8732 2.233922 ACATAGTTGTGTAGCCTTCGCT 59.766 45.455 0.00 0.00 41.17 4.93
6660 8733 2.603560 GACATAGTTGTGTAGCCTTCGC 59.396 50.000 0.00 0.00 35.79 4.70
6661 8734 3.187700 GGACATAGTTGTGTAGCCTTCG 58.812 50.000 0.00 0.00 35.79 3.79
6662 8735 4.202245 TGGACATAGTTGTGTAGCCTTC 57.798 45.455 0.00 0.00 35.79 3.46
6663 8736 4.634012 TTGGACATAGTTGTGTAGCCTT 57.366 40.909 0.00 0.00 35.79 4.35
6664 8737 4.565652 CCTTTGGACATAGTTGTGTAGCCT 60.566 45.833 0.00 0.00 35.79 4.58
6665 8738 3.689649 CCTTTGGACATAGTTGTGTAGCC 59.310 47.826 0.00 0.00 35.79 3.93
6666 8739 4.324267 ACCTTTGGACATAGTTGTGTAGC 58.676 43.478 0.00 0.00 35.79 3.58
6667 8740 6.460781 TGTACCTTTGGACATAGTTGTGTAG 58.539 40.000 0.00 0.00 35.79 2.74
6668 8741 6.422344 TGTACCTTTGGACATAGTTGTGTA 57.578 37.500 0.00 0.00 35.79 2.90
6669 8742 5.298989 TGTACCTTTGGACATAGTTGTGT 57.701 39.130 0.00 0.00 35.79 3.72
6670 8743 4.695455 CCTGTACCTTTGGACATAGTTGTG 59.305 45.833 0.00 0.00 35.79 3.33
6671 8744 4.349930 ACCTGTACCTTTGGACATAGTTGT 59.650 41.667 0.00 0.00 39.32 3.32
6672 8745 4.906618 ACCTGTACCTTTGGACATAGTTG 58.093 43.478 0.00 0.00 0.00 3.16
6673 8746 6.691255 TTACCTGTACCTTTGGACATAGTT 57.309 37.500 0.00 0.00 0.00 2.24
6674 8747 6.691255 TTTACCTGTACCTTTGGACATAGT 57.309 37.500 0.00 0.00 0.00 2.12
6675 8748 9.675464 TTATTTTACCTGTACCTTTGGACATAG 57.325 33.333 0.00 0.00 0.00 2.23
6677 8750 8.799367 GTTTATTTTACCTGTACCTTTGGACAT 58.201 33.333 0.00 0.00 0.00 3.06
6678 8751 7.231115 GGTTTATTTTACCTGTACCTTTGGACA 59.769 37.037 0.00 0.00 32.75 4.02
6679 8752 7.309377 GGGTTTATTTTACCTGTACCTTTGGAC 60.309 40.741 0.00 0.00 35.92 4.02
6680 8753 6.720748 GGGTTTATTTTACCTGTACCTTTGGA 59.279 38.462 0.00 0.00 35.92 3.53
6681 8754 6.722590 AGGGTTTATTTTACCTGTACCTTTGG 59.277 38.462 0.00 0.00 35.92 3.28
6682 8755 7.770366 AGGGTTTATTTTACCTGTACCTTTG 57.230 36.000 0.00 0.00 35.92 2.77
6683 8756 9.880254 TTAAGGGTTTATTTTACCTGTACCTTT 57.120 29.630 0.00 0.00 36.20 3.11
6684 8757 9.880254 TTTAAGGGTTTATTTTACCTGTACCTT 57.120 29.630 0.00 0.00 38.14 3.50
6687 8760 9.992910 CGATTTAAGGGTTTATTTTACCTGTAC 57.007 33.333 0.00 0.00 35.92 2.90
6688 8761 8.676401 GCGATTTAAGGGTTTATTTTACCTGTA 58.324 33.333 0.00 0.00 35.92 2.74
6689 8762 7.177041 TGCGATTTAAGGGTTTATTTTACCTGT 59.823 33.333 0.00 0.00 35.92 4.00
6690 8763 7.540299 TGCGATTTAAGGGTTTATTTTACCTG 58.460 34.615 0.00 0.00 35.92 4.00
6691 8764 7.706100 TGCGATTTAAGGGTTTATTTTACCT 57.294 32.000 0.00 0.00 35.92 3.08
6692 8765 8.760103 TTTGCGATTTAAGGGTTTATTTTACC 57.240 30.769 0.00 0.00 34.82 2.85
6694 8767 8.913656 CGTTTTGCGATTTAAGGGTTTATTTTA 58.086 29.630 0.00 0.00 44.77 1.52
6695 8768 7.652507 TCGTTTTGCGATTTAAGGGTTTATTTT 59.347 29.630 0.00 0.00 45.68 1.82
6696 8769 7.146648 TCGTTTTGCGATTTAAGGGTTTATTT 58.853 30.769 0.00 0.00 45.68 1.40
6697 8770 6.679843 TCGTTTTGCGATTTAAGGGTTTATT 58.320 32.000 0.00 0.00 45.68 1.40
6698 8771 6.256912 TCGTTTTGCGATTTAAGGGTTTAT 57.743 33.333 0.00 0.00 45.68 1.40
6699 8772 5.686159 TCGTTTTGCGATTTAAGGGTTTA 57.314 34.783 0.00 0.00 45.68 2.01
6700 8773 4.571372 TCGTTTTGCGATTTAAGGGTTT 57.429 36.364 0.00 0.00 45.68 3.27
6712 8785 2.032894 ACTGTTGACTGATCGTTTTGCG 60.033 45.455 0.00 0.00 43.01 4.85
6713 8786 3.609103 ACTGTTGACTGATCGTTTTGC 57.391 42.857 0.00 0.00 0.00 3.68
6714 8787 6.021468 GTGAAAACTGTTGACTGATCGTTTTG 60.021 38.462 8.07 0.00 35.47 2.44
6715 8788 6.027749 GTGAAAACTGTTGACTGATCGTTTT 58.972 36.000 0.00 0.00 37.30 2.43
6716 8789 5.123186 TGTGAAAACTGTTGACTGATCGTTT 59.877 36.000 0.00 0.00 0.00 3.60
6717 8790 4.634004 TGTGAAAACTGTTGACTGATCGTT 59.366 37.500 0.00 0.00 0.00 3.85
6718 8791 4.188462 TGTGAAAACTGTTGACTGATCGT 58.812 39.130 0.00 0.00 0.00 3.73
6719 8792 4.794248 TGTGAAAACTGTTGACTGATCG 57.206 40.909 0.00 0.00 0.00 3.69
6720 8793 6.145535 GGAATGTGAAAACTGTTGACTGATC 58.854 40.000 0.00 0.00 0.00 2.92
6721 8794 5.277974 CGGAATGTGAAAACTGTTGACTGAT 60.278 40.000 0.00 0.00 0.00 2.90
6722 8795 4.035091 CGGAATGTGAAAACTGTTGACTGA 59.965 41.667 0.00 0.00 0.00 3.41
6723 8796 4.035091 TCGGAATGTGAAAACTGTTGACTG 59.965 41.667 0.00 0.00 0.00 3.51
6724 8797 4.196193 TCGGAATGTGAAAACTGTTGACT 58.804 39.130 0.00 0.00 0.00 3.41
6725 8798 4.545823 TCGGAATGTGAAAACTGTTGAC 57.454 40.909 0.00 0.00 0.00 3.18
6726 8799 5.568685 TTTCGGAATGTGAAAACTGTTGA 57.431 34.783 0.00 0.00 32.70 3.18
6727 8800 7.807433 TGATATTTCGGAATGTGAAAACTGTTG 59.193 33.333 0.00 0.00 38.68 3.33
6728 8801 7.881142 TGATATTTCGGAATGTGAAAACTGTT 58.119 30.769 0.00 0.00 38.68 3.16
6729 8802 7.447374 TGATATTTCGGAATGTGAAAACTGT 57.553 32.000 0.00 0.00 38.68 3.55
6730 8803 8.915871 ATTGATATTTCGGAATGTGAAAACTG 57.084 30.769 0.00 0.00 38.68 3.16
6731 8804 9.357652 CAATTGATATTTCGGAATGTGAAAACT 57.642 29.630 0.00 0.00 38.68 2.66
6732 8805 9.139174 ACAATTGATATTTCGGAATGTGAAAAC 57.861 29.630 13.59 0.00 38.68 2.43
6733 8806 9.703892 AACAATTGATATTTCGGAATGTGAAAA 57.296 25.926 13.59 0.00 38.68 2.29
6734 8807 9.703892 AAACAATTGATATTTCGGAATGTGAAA 57.296 25.926 13.59 0.00 39.45 2.69
6735 8808 9.138062 CAAACAATTGATATTTCGGAATGTGAA 57.862 29.630 13.59 0.00 38.94 3.18
6736 8809 8.303156 ACAAACAATTGATATTTCGGAATGTGA 58.697 29.630 13.59 0.00 38.94 3.58
6737 8810 8.464770 ACAAACAATTGATATTTCGGAATGTG 57.535 30.769 13.59 0.00 38.94 3.21
6738 8811 7.759433 GGACAAACAATTGATATTTCGGAATGT 59.241 33.333 13.59 0.00 38.94 2.71
6739 8812 7.975616 AGGACAAACAATTGATATTTCGGAATG 59.024 33.333 13.59 0.00 38.94 2.67
6740 8813 8.066612 AGGACAAACAATTGATATTTCGGAAT 57.933 30.769 13.59 0.00 38.94 3.01
6741 8814 7.461182 AGGACAAACAATTGATATTTCGGAA 57.539 32.000 13.59 0.00 38.94 4.30
6742 8815 7.175816 TGAAGGACAAACAATTGATATTTCGGA 59.824 33.333 13.59 0.00 38.94 4.55
6743 8816 7.312154 TGAAGGACAAACAATTGATATTTCGG 58.688 34.615 13.59 0.00 38.94 4.30
6744 8817 8.741101 TTGAAGGACAAACAATTGATATTTCG 57.259 30.769 13.59 1.17 38.94 3.46
6753 8826 6.998968 TTTGCAATTGAAGGACAAACAATT 57.001 29.167 10.34 0.00 42.42 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.