Multiple sequence alignment - TraesCS4B01G211000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G211000 chr4B 100.000 4957 0 0 1 4957 449514560 449509604 0.000000e+00 9154
1 TraesCS4B01G211000 chr4A 97.205 3327 76 10 1635 4952 100960876 100964194 0.000000e+00 5613
2 TraesCS4B01G211000 chr4A 86.967 821 55 26 781 1576 100960056 100960849 0.000000e+00 876
3 TraesCS4B01G211000 chr4A 84.928 345 36 9 275 603 100955016 100955360 7.950000e-88 335
4 TraesCS4B01G211000 chr4D 93.895 3718 168 37 1257 4952 364036379 364032699 0.000000e+00 5553
5 TraesCS4B01G211000 chr4D 97.534 446 9 2 806 1251 364036881 364036438 0.000000e+00 761
6 TraesCS4B01G211000 chr4D 92.143 280 21 1 1 280 82495673 82495951 1.290000e-105 394
7 TraesCS4B01G211000 chr4D 91.786 280 22 1 1 280 464368764 464368486 6.020000e-104 388
8 TraesCS4B01G211000 chr4D 93.548 186 9 2 465 648 364047207 364047023 1.760000e-69 274
9 TraesCS4B01G211000 chr4D 94.737 133 5 1 278 408 364048491 364048359 6.500000e-49 206
10 TraesCS4B01G211000 chr5D 92.908 282 17 3 1 280 562432631 562432351 1.660000e-109 407
11 TraesCS4B01G211000 chr5D 91.844 282 20 3 1 280 390366511 390366791 1.670000e-104 390
12 TraesCS4B01G211000 chr2D 92.199 282 20 2 1 280 482378883 482379164 1.000000e-106 398
13 TraesCS4B01G211000 chr3D 92.143 280 21 1 1 280 445622984 445623262 1.290000e-105 394
14 TraesCS4B01G211000 chr3D 92.143 280 21 1 1 280 508100317 508100039 1.290000e-105 394
15 TraesCS4B01G211000 chr3D 91.844 282 21 2 1 280 566073292 566073573 4.650000e-105 392
16 TraesCS4B01G211000 chr3D 91.786 280 22 1 1 280 369418522 369418800 6.020000e-104 388


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G211000 chr4B 449509604 449514560 4956 True 9154.0 9154 100.0000 1 4957 1 chr4B.!!$R1 4956
1 TraesCS4B01G211000 chr4A 100960056 100964194 4138 False 3244.5 5613 92.0860 781 4952 2 chr4A.!!$F2 4171
2 TraesCS4B01G211000 chr4D 364032699 364036881 4182 True 3157.0 5553 95.7145 806 4952 2 chr4D.!!$R2 4146
3 TraesCS4B01G211000 chr4D 364047023 364048491 1468 True 240.0 274 94.1425 278 648 2 chr4D.!!$R3 370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.034059 GACGCGAGGGATCCAATGAT 59.966 55.0 15.93 0.0 0.00 2.45 F
802 1902 0.037697 CGACCCACATCGGAGACAAA 60.038 55.0 0.00 0.0 42.51 2.83 F
1220 2323 0.459585 GTGCGCCGTTTATCCAGAGA 60.460 55.0 4.18 0.0 0.00 3.10 F
1613 2776 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 F
1617 2780 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 F
1625 2788 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 F
1627 2790 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 F
1630 2793 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.0 0.00 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 2755 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49 R
1604 2767 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72 R
2662 3833 2.264005 AAGTGCCAAATGTCCGTACA 57.736 45.000 0.00 0.00 40.69 2.90 R
3305 4478 0.671163 TACCGTTTGGCTAACAGGCG 60.671 55.000 17.13 3.41 44.78 5.52 R
3350 4523 3.785325 TGTGGACAATCCTGATAATCCCA 59.215 43.478 6.98 0.00 37.46 4.37 R
3574 4749 9.796120 CACCTTTCTTGTTTGAAGTTTACATAA 57.204 29.630 0.00 0.00 0.00 1.90 R
3641 4825 9.561069 GACAGGACCATGTTCAGTAATAATAAT 57.439 33.333 0.00 0.00 32.25 1.28 R
3991 5175 0.031111 ATGCTACTCTGGCCCAGGTA 60.031 55.000 11.68 10.92 31.51 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.184736 AAAAACGTGCTCCTGGTGT 57.815 47.368 0.00 0.00 0.00 4.16
29 30 0.738389 AAAAACGTGCTCCTGGTGTG 59.262 50.000 0.00 0.00 0.00 3.82
30 31 1.101049 AAAACGTGCTCCTGGTGTGG 61.101 55.000 0.00 0.00 0.00 4.17
31 32 2.265467 AAACGTGCTCCTGGTGTGGT 62.265 55.000 0.00 0.00 0.00 4.16
32 33 2.111043 CGTGCTCCTGGTGTGGTT 59.889 61.111 0.00 0.00 0.00 3.67
33 34 1.525995 CGTGCTCCTGGTGTGGTTT 60.526 57.895 0.00 0.00 0.00 3.27
34 35 1.101049 CGTGCTCCTGGTGTGGTTTT 61.101 55.000 0.00 0.00 0.00 2.43
35 36 1.111277 GTGCTCCTGGTGTGGTTTTT 58.889 50.000 0.00 0.00 0.00 1.94
82 83 9.965824 AAAAAGTTCGTCAAAATCTATCAACAT 57.034 25.926 0.00 0.00 0.00 2.71
83 84 8.955061 AAAGTTCGTCAAAATCTATCAACATG 57.045 30.769 0.00 0.00 0.00 3.21
84 85 7.076842 AGTTCGTCAAAATCTATCAACATGG 57.923 36.000 0.00 0.00 0.00 3.66
85 86 6.094048 AGTTCGTCAAAATCTATCAACATGGG 59.906 38.462 0.00 0.00 0.00 4.00
86 87 5.739959 TCGTCAAAATCTATCAACATGGGA 58.260 37.500 0.00 0.00 0.00 4.37
87 88 6.356556 TCGTCAAAATCTATCAACATGGGAT 58.643 36.000 0.00 2.37 0.00 3.85
88 89 6.483307 TCGTCAAAATCTATCAACATGGGATC 59.517 38.462 5.52 0.00 0.00 3.36
89 90 6.484643 CGTCAAAATCTATCAACATGGGATCT 59.515 38.462 5.52 0.00 0.00 2.75
90 91 7.657354 CGTCAAAATCTATCAACATGGGATCTA 59.343 37.037 5.52 0.00 0.00 1.98
91 92 8.997323 GTCAAAATCTATCAACATGGGATCTAG 58.003 37.037 5.52 0.62 0.00 2.43
92 93 8.717717 TCAAAATCTATCAACATGGGATCTAGT 58.282 33.333 5.52 0.00 0.00 2.57
93 94 9.347240 CAAAATCTATCAACATGGGATCTAGTT 57.653 33.333 5.52 0.16 0.00 2.24
94 95 9.927081 AAAATCTATCAACATGGGATCTAGTTT 57.073 29.630 5.52 5.16 0.00 2.66
95 96 9.927081 AAATCTATCAACATGGGATCTAGTTTT 57.073 29.630 5.52 4.80 0.00 2.43
96 97 8.915057 ATCTATCAACATGGGATCTAGTTTTG 57.085 34.615 5.52 0.00 0.00 2.44
97 98 8.089625 TCTATCAACATGGGATCTAGTTTTGA 57.910 34.615 5.52 0.00 0.00 2.69
98 99 8.548025 TCTATCAACATGGGATCTAGTTTTGAA 58.452 33.333 5.52 0.00 0.00 2.69
99 100 9.177608 CTATCAACATGGGATCTAGTTTTGAAA 57.822 33.333 5.52 0.00 0.00 2.69
100 101 7.831691 TCAACATGGGATCTAGTTTTGAAAA 57.168 32.000 0.00 0.00 0.00 2.29
101 102 8.421249 TCAACATGGGATCTAGTTTTGAAAAT 57.579 30.769 0.00 0.00 0.00 1.82
102 103 8.522830 TCAACATGGGATCTAGTTTTGAAAATC 58.477 33.333 0.00 0.00 0.00 2.17
103 104 8.526147 CAACATGGGATCTAGTTTTGAAAATCT 58.474 33.333 0.00 0.00 0.00 2.40
104 105 8.286191 ACATGGGATCTAGTTTTGAAAATCTC 57.714 34.615 0.00 0.00 0.00 2.75
105 106 6.985188 TGGGATCTAGTTTTGAAAATCTCG 57.015 37.500 0.00 0.00 0.00 4.04
106 107 6.707290 TGGGATCTAGTTTTGAAAATCTCGA 58.293 36.000 0.00 0.00 0.00 4.04
107 108 6.594159 TGGGATCTAGTTTTGAAAATCTCGAC 59.406 38.462 0.00 0.00 0.00 4.20
108 109 6.237861 GGGATCTAGTTTTGAAAATCTCGACG 60.238 42.308 0.00 0.00 0.00 5.12
109 110 5.511088 TCTAGTTTTGAAAATCTCGACGC 57.489 39.130 0.00 0.00 0.00 5.19
110 111 3.169207 AGTTTTGAAAATCTCGACGCG 57.831 42.857 3.53 3.53 0.00 6.01
111 112 2.798283 AGTTTTGAAAATCTCGACGCGA 59.202 40.909 15.93 0.00 0.00 5.87
120 121 2.752640 TCGACGCGAGGGATCCAA 60.753 61.111 15.93 0.00 0.00 3.53
121 122 2.125326 TCGACGCGAGGGATCCAAT 61.125 57.895 15.93 0.26 0.00 3.16
122 123 1.951130 CGACGCGAGGGATCCAATG 60.951 63.158 15.93 2.85 0.00 2.82
123 124 1.441729 GACGCGAGGGATCCAATGA 59.558 57.895 15.93 0.00 0.00 2.57
124 125 0.034059 GACGCGAGGGATCCAATGAT 59.966 55.000 15.93 0.00 0.00 2.45
125 126 0.469917 ACGCGAGGGATCCAATGATT 59.530 50.000 15.93 0.00 0.00 2.57
126 127 1.691976 ACGCGAGGGATCCAATGATTA 59.308 47.619 15.93 0.00 0.00 1.75
127 128 2.104111 ACGCGAGGGATCCAATGATTAA 59.896 45.455 15.93 0.00 0.00 1.40
128 129 3.138304 CGCGAGGGATCCAATGATTAAA 58.862 45.455 15.23 0.00 0.00 1.52
129 130 3.563808 CGCGAGGGATCCAATGATTAAAA 59.436 43.478 15.23 0.00 0.00 1.52
130 131 4.554723 CGCGAGGGATCCAATGATTAAAAC 60.555 45.833 15.23 0.00 0.00 2.43
131 132 4.338118 GCGAGGGATCCAATGATTAAAACA 59.662 41.667 15.23 0.00 0.00 2.83
132 133 5.506317 GCGAGGGATCCAATGATTAAAACAG 60.506 44.000 15.23 0.00 0.00 3.16
133 134 5.590259 CGAGGGATCCAATGATTAAAACAGT 59.410 40.000 15.23 0.00 0.00 3.55
134 135 6.095440 CGAGGGATCCAATGATTAAAACAGTT 59.905 38.462 15.23 0.00 0.00 3.16
135 136 7.362920 CGAGGGATCCAATGATTAAAACAGTTT 60.363 37.037 15.23 0.00 0.00 2.66
136 137 7.614494 AGGGATCCAATGATTAAAACAGTTTG 58.386 34.615 15.23 0.00 0.00 2.93
137 138 7.454380 AGGGATCCAATGATTAAAACAGTTTGA 59.546 33.333 15.23 0.00 0.00 2.69
138 139 7.761249 GGGATCCAATGATTAAAACAGTTTGAG 59.239 37.037 15.23 0.00 0.00 3.02
139 140 8.522830 GGATCCAATGATTAAAACAGTTTGAGA 58.477 33.333 6.95 0.00 0.00 3.27
147 148 9.748708 TGATTAAAACAGTTTGAGATTTGGAAG 57.251 29.630 0.00 0.00 0.00 3.46
148 149 8.593492 ATTAAAACAGTTTGAGATTTGGAAGC 57.407 30.769 0.00 0.00 0.00 3.86
149 150 5.596836 AAACAGTTTGAGATTTGGAAGCA 57.403 34.783 0.00 0.00 0.00 3.91
150 151 5.796424 AACAGTTTGAGATTTGGAAGCAT 57.204 34.783 0.00 0.00 0.00 3.79
151 152 5.130292 ACAGTTTGAGATTTGGAAGCATG 57.870 39.130 0.00 0.00 0.00 4.06
152 153 4.021719 ACAGTTTGAGATTTGGAAGCATGG 60.022 41.667 0.00 0.00 0.00 3.66
153 154 4.021719 CAGTTTGAGATTTGGAAGCATGGT 60.022 41.667 0.00 0.00 0.00 3.55
154 155 4.590222 AGTTTGAGATTTGGAAGCATGGTT 59.410 37.500 10.50 10.50 0.00 3.67
155 156 5.070847 AGTTTGAGATTTGGAAGCATGGTTT 59.929 36.000 12.13 0.00 0.00 3.27
156 157 6.267471 AGTTTGAGATTTGGAAGCATGGTTTA 59.733 34.615 12.13 1.51 0.00 2.01
157 158 6.662865 TTGAGATTTGGAAGCATGGTTTAA 57.337 33.333 12.13 7.78 0.00 1.52
158 159 6.271488 TGAGATTTGGAAGCATGGTTTAAG 57.729 37.500 12.13 0.00 0.00 1.85
159 160 6.009589 TGAGATTTGGAAGCATGGTTTAAGA 58.990 36.000 12.13 0.00 0.00 2.10
160 161 6.151648 TGAGATTTGGAAGCATGGTTTAAGAG 59.848 38.462 12.13 0.00 0.00 2.85
161 162 6.248433 AGATTTGGAAGCATGGTTTAAGAGA 58.752 36.000 12.13 0.00 0.00 3.10
162 163 6.894103 AGATTTGGAAGCATGGTTTAAGAGAT 59.106 34.615 12.13 2.25 0.00 2.75
163 164 8.055181 AGATTTGGAAGCATGGTTTAAGAGATA 58.945 33.333 12.13 0.00 0.00 1.98
164 165 8.593945 ATTTGGAAGCATGGTTTAAGAGATAA 57.406 30.769 12.13 0.00 0.00 1.75
165 166 8.415950 TTTGGAAGCATGGTTTAAGAGATAAA 57.584 30.769 12.13 2.90 0.00 1.40
166 167 8.415950 TTGGAAGCATGGTTTAAGAGATAAAA 57.584 30.769 12.13 0.00 35.33 1.52
167 168 7.826690 TGGAAGCATGGTTTAAGAGATAAAAC 58.173 34.615 12.13 0.00 40.87 2.43
215 216 1.956802 GGAAAACTCCCAGGTTGCG 59.043 57.895 0.00 0.00 0.00 4.85
216 217 0.536460 GGAAAACTCCCAGGTTGCGA 60.536 55.000 0.00 0.00 0.00 5.10
217 218 0.591659 GAAAACTCCCAGGTTGCGAC 59.408 55.000 0.00 0.00 0.00 5.19
218 219 0.106918 AAAACTCCCAGGTTGCGACA 60.107 50.000 6.39 0.00 0.00 4.35
219 220 0.106918 AAACTCCCAGGTTGCGACAA 60.107 50.000 6.39 0.00 0.00 3.18
220 221 0.535102 AACTCCCAGGTTGCGACAAG 60.535 55.000 6.39 0.00 0.00 3.16
221 222 1.071471 CTCCCAGGTTGCGACAAGT 59.929 57.895 6.39 0.00 0.00 3.16
222 223 1.227823 TCCCAGGTTGCGACAAGTG 60.228 57.895 6.39 0.00 0.00 3.16
223 224 2.260869 CCCAGGTTGCGACAAGTGG 61.261 63.158 6.39 9.17 0.00 4.00
224 225 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
244 245 2.949106 GCTGCATGTGCGTCACTT 59.051 55.556 10.54 2.86 45.83 3.16
245 246 2.161831 GCTGCATGTGCGTCACTTA 58.838 52.632 10.54 0.00 45.83 2.24
246 247 0.729116 GCTGCATGTGCGTCACTTAT 59.271 50.000 10.54 0.00 45.83 1.73
247 248 1.267732 GCTGCATGTGCGTCACTTATC 60.268 52.381 10.54 2.67 45.83 1.75
248 249 0.998669 TGCATGTGCGTCACTTATCG 59.001 50.000 10.54 0.00 45.83 2.92
249 250 0.999406 GCATGTGCGTCACTTATCGT 59.001 50.000 10.54 0.00 35.11 3.73
250 251 1.267038 GCATGTGCGTCACTTATCGTG 60.267 52.381 10.54 0.00 45.18 4.35
257 258 4.827481 CACTTATCGTGACCGGGG 57.173 61.111 6.32 0.00 46.81 5.73
258 259 2.195389 CACTTATCGTGACCGGGGA 58.805 57.895 6.32 0.00 46.81 4.81
259 260 0.533491 CACTTATCGTGACCGGGGAA 59.467 55.000 6.32 0.00 46.81 3.97
260 261 0.822164 ACTTATCGTGACCGGGGAAG 59.178 55.000 6.32 0.59 33.95 3.46
261 262 0.104304 CTTATCGTGACCGGGGAAGG 59.896 60.000 6.32 0.00 37.30 3.46
263 264 1.324740 TATCGTGACCGGGGAAGGTG 61.325 60.000 6.32 0.00 46.09 4.00
264 265 4.388499 CGTGACCGGGGAAGGTGG 62.388 72.222 6.32 0.00 46.09 4.61
265 266 2.926242 GTGACCGGGGAAGGTGGA 60.926 66.667 6.32 0.00 46.09 4.02
266 267 2.606519 TGACCGGGGAAGGTGGAG 60.607 66.667 6.32 0.00 46.09 3.86
267 268 2.606826 GACCGGGGAAGGTGGAGT 60.607 66.667 6.32 0.00 46.09 3.85
268 269 2.928396 ACCGGGGAAGGTGGAGTG 60.928 66.667 6.32 0.00 44.07 3.51
269 270 2.928396 CCGGGGAAGGTGGAGTGT 60.928 66.667 0.00 0.00 0.00 3.55
270 271 2.526046 CCGGGGAAGGTGGAGTGTT 61.526 63.158 0.00 0.00 0.00 3.32
271 272 1.003718 CGGGGAAGGTGGAGTGTTC 60.004 63.158 0.00 0.00 0.00 3.18
272 273 1.481056 CGGGGAAGGTGGAGTGTTCT 61.481 60.000 0.00 0.00 0.00 3.01
273 274 0.771755 GGGGAAGGTGGAGTGTTCTT 59.228 55.000 0.00 0.00 0.00 2.52
274 275 1.145119 GGGGAAGGTGGAGTGTTCTTT 59.855 52.381 0.00 0.00 0.00 2.52
275 276 2.230660 GGGAAGGTGGAGTGTTCTTTG 58.769 52.381 0.00 0.00 0.00 2.77
276 277 2.422945 GGGAAGGTGGAGTGTTCTTTGT 60.423 50.000 0.00 0.00 0.00 2.83
289 290 3.949885 CTTTGTAACCCGGGGGCCC 62.950 68.421 27.92 15.76 39.32 5.80
380 383 3.495806 CCCATCCTATCTTCCTCACTTGC 60.496 52.174 0.00 0.00 0.00 4.01
397 400 4.389992 CACTTGCAGATCGTTGTAAGATGT 59.610 41.667 16.28 0.00 41.51 3.06
499 1599 2.964925 TGCATATTCCGCGGCGAC 60.965 61.111 25.92 6.88 0.00 5.19
513 1613 2.654912 GCGACACCGACCTCGTTTG 61.655 63.158 0.00 0.00 38.22 2.93
514 1614 2.654912 CGACACCGACCTCGTTTGC 61.655 63.158 0.00 0.00 38.22 3.68
554 1654 5.294552 GGAAAGTTTATGCGCATCTAGTCTT 59.705 40.000 29.11 20.17 0.00 3.01
557 1657 5.178797 AGTTTATGCGCATCTAGTCTTGTT 58.821 37.500 29.11 0.66 0.00 2.83
651 1751 6.882610 TCATGGCTTTTAACATGCTATAGG 57.117 37.500 1.04 0.00 43.11 2.57
652 1752 6.600388 TCATGGCTTTTAACATGCTATAGGA 58.400 36.000 1.04 0.00 43.11 2.94
653 1753 6.712095 TCATGGCTTTTAACATGCTATAGGAG 59.288 38.462 1.04 0.00 43.11 3.69
654 1754 6.001449 TGGCTTTTAACATGCTATAGGAGT 57.999 37.500 1.04 0.00 0.00 3.85
655 1755 7.131907 TGGCTTTTAACATGCTATAGGAGTA 57.868 36.000 1.04 0.00 0.00 2.59
656 1756 7.745717 TGGCTTTTAACATGCTATAGGAGTAT 58.254 34.615 1.04 0.00 0.00 2.12
657 1757 8.876181 TGGCTTTTAACATGCTATAGGAGTATA 58.124 33.333 1.04 0.00 0.00 1.47
658 1758 9.720769 GGCTTTTAACATGCTATAGGAGTATAA 57.279 33.333 1.04 0.00 0.00 0.98
679 1779 9.326413 GTATAAGATAATTATTCCATGACCCCG 57.674 37.037 0.00 0.00 0.00 5.73
680 1780 6.448369 AAGATAATTATTCCATGACCCCGA 57.552 37.500 0.00 0.00 0.00 5.14
681 1781 6.448369 AGATAATTATTCCATGACCCCGAA 57.552 37.500 0.00 0.00 0.00 4.30
682 1782 6.848069 AGATAATTATTCCATGACCCCGAAA 58.152 36.000 0.00 0.00 0.00 3.46
683 1783 7.294584 AGATAATTATTCCATGACCCCGAAAA 58.705 34.615 0.00 0.00 0.00 2.29
684 1784 7.782644 AGATAATTATTCCATGACCCCGAAAAA 59.217 33.333 0.00 0.00 0.00 1.94
726 1826 9.983024 TTTATGAAAAGGGTATTATCAACCAGA 57.017 29.630 0.00 0.00 38.87 3.86
728 1828 7.880160 TGAAAAGGGTATTATCAACCAGATG 57.120 36.000 0.00 0.00 38.87 2.90
729 1829 6.321181 TGAAAAGGGTATTATCAACCAGATGC 59.679 38.462 0.00 0.00 38.87 3.91
730 1830 5.653255 AAGGGTATTATCAACCAGATGCT 57.347 39.130 0.00 0.00 38.87 3.79
731 1831 6.763715 AAGGGTATTATCAACCAGATGCTA 57.236 37.500 0.00 0.00 38.87 3.49
732 1832 6.763715 AGGGTATTATCAACCAGATGCTAA 57.236 37.500 0.00 0.00 38.87 3.09
733 1833 6.773638 AGGGTATTATCAACCAGATGCTAAG 58.226 40.000 0.00 0.00 38.87 2.18
734 1834 6.330250 AGGGTATTATCAACCAGATGCTAAGT 59.670 38.462 0.00 0.00 38.87 2.24
735 1835 6.998673 GGGTATTATCAACCAGATGCTAAGTT 59.001 38.462 0.00 0.00 38.87 2.66
736 1836 7.502561 GGGTATTATCAACCAGATGCTAAGTTT 59.497 37.037 0.00 0.00 38.87 2.66
737 1837 9.555727 GGTATTATCAACCAGATGCTAAGTTTA 57.444 33.333 0.00 0.00 37.57 2.01
741 1841 9.555727 TTATCAACCAGATGCTAAGTTTATACC 57.444 33.333 0.00 0.00 37.57 2.73
742 1842 6.046593 TCAACCAGATGCTAAGTTTATACCG 58.953 40.000 0.00 0.00 0.00 4.02
743 1843 5.609533 ACCAGATGCTAAGTTTATACCGT 57.390 39.130 0.00 0.00 0.00 4.83
744 1844 5.985911 ACCAGATGCTAAGTTTATACCGTT 58.014 37.500 0.00 0.00 0.00 4.44
745 1845 7.116075 ACCAGATGCTAAGTTTATACCGTTA 57.884 36.000 0.00 0.00 0.00 3.18
746 1846 6.982724 ACCAGATGCTAAGTTTATACCGTTAC 59.017 38.462 0.00 0.00 0.00 2.50
747 1847 7.147776 ACCAGATGCTAAGTTTATACCGTTACT 60.148 37.037 0.00 0.00 0.00 2.24
748 1848 7.381678 CCAGATGCTAAGTTTATACCGTTACTC 59.618 40.741 0.00 0.00 0.00 2.59
749 1849 7.113124 CAGATGCTAAGTTTATACCGTTACTCG 59.887 40.741 0.00 0.00 39.52 4.18
750 1850 6.435430 TGCTAAGTTTATACCGTTACTCGA 57.565 37.500 0.00 0.00 42.86 4.04
751 1851 6.489675 TGCTAAGTTTATACCGTTACTCGAG 58.510 40.000 11.84 11.84 42.86 4.04
752 1852 5.397828 GCTAAGTTTATACCGTTACTCGAGC 59.602 44.000 13.61 0.00 42.86 5.03
753 1853 3.945179 AGTTTATACCGTTACTCGAGCG 58.055 45.455 13.61 8.21 42.86 5.03
754 1854 3.375299 AGTTTATACCGTTACTCGAGCGT 59.625 43.478 13.61 3.72 42.86 5.07
755 1855 3.592381 TTATACCGTTACTCGAGCGTC 57.408 47.619 13.61 1.70 42.86 5.19
756 1856 1.661341 ATACCGTTACTCGAGCGTCT 58.339 50.000 13.61 0.00 42.86 4.18
757 1857 1.002366 TACCGTTACTCGAGCGTCTC 58.998 55.000 13.61 0.00 42.86 3.36
758 1858 0.673022 ACCGTTACTCGAGCGTCTCT 60.673 55.000 13.61 0.00 42.86 3.10
759 1859 0.447011 CCGTTACTCGAGCGTCTCTT 59.553 55.000 13.61 0.00 42.86 2.85
760 1860 1.135746 CCGTTACTCGAGCGTCTCTTT 60.136 52.381 13.61 0.00 42.86 2.52
761 1861 2.167591 CGTTACTCGAGCGTCTCTTTC 58.832 52.381 13.61 0.00 42.86 2.62
762 1862 2.159680 CGTTACTCGAGCGTCTCTTTCT 60.160 50.000 13.61 0.00 42.86 2.52
763 1863 3.419004 GTTACTCGAGCGTCTCTTTCTC 58.581 50.000 13.61 0.00 0.00 2.87
764 1864 1.816074 ACTCGAGCGTCTCTTTCTCT 58.184 50.000 13.61 0.00 0.00 3.10
765 1865 1.735571 ACTCGAGCGTCTCTTTCTCTC 59.264 52.381 13.61 0.00 0.00 3.20
766 1866 1.063469 CTCGAGCGTCTCTTTCTCTCC 59.937 57.143 0.00 0.00 0.00 3.71
767 1867 0.805614 CGAGCGTCTCTTTCTCTCCA 59.194 55.000 5.53 0.00 0.00 3.86
768 1868 1.200252 CGAGCGTCTCTTTCTCTCCAA 59.800 52.381 5.53 0.00 0.00 3.53
769 1869 2.730715 CGAGCGTCTCTTTCTCTCCAAG 60.731 54.545 5.53 0.00 0.00 3.61
770 1870 2.230266 GAGCGTCTCTTTCTCTCCAAGT 59.770 50.000 0.37 0.00 0.00 3.16
771 1871 2.230266 AGCGTCTCTTTCTCTCCAAGTC 59.770 50.000 0.00 0.00 0.00 3.01
772 1872 2.857618 CGTCTCTTTCTCTCCAAGTCG 58.142 52.381 0.00 0.00 0.00 4.18
773 1873 2.414824 CGTCTCTTTCTCTCCAAGTCGG 60.415 54.545 0.00 0.00 0.00 4.79
774 1874 2.559231 GTCTCTTTCTCTCCAAGTCGGT 59.441 50.000 0.00 0.00 35.57 4.69
775 1875 2.820787 TCTCTTTCTCTCCAAGTCGGTC 59.179 50.000 0.00 0.00 35.57 4.79
776 1876 2.823154 CTCTTTCTCTCCAAGTCGGTCT 59.177 50.000 0.00 0.00 35.57 3.85
777 1877 2.820787 TCTTTCTCTCCAAGTCGGTCTC 59.179 50.000 0.00 0.00 35.57 3.36
778 1878 1.166129 TTCTCTCCAAGTCGGTCTCG 58.834 55.000 0.00 0.00 35.57 4.04
779 1879 0.677098 TCTCTCCAAGTCGGTCTCGG 60.677 60.000 0.00 0.00 36.95 4.63
801 1901 1.589630 CGACCCACATCGGAGACAA 59.410 57.895 0.00 0.00 42.51 3.18
802 1902 0.037697 CGACCCACATCGGAGACAAA 60.038 55.000 0.00 0.00 42.51 2.83
803 1903 1.606994 CGACCCACATCGGAGACAAAA 60.607 52.381 0.00 0.00 42.51 2.44
804 1904 2.076863 GACCCACATCGGAGACAAAAG 58.923 52.381 0.00 0.00 42.51 2.27
897 1997 2.954020 CTTGCCTTCGCGCGATCCTA 62.954 60.000 35.21 18.11 38.08 2.94
929 2029 2.567049 GGTCACTCGCGCTAGTGT 59.433 61.111 33.00 12.28 45.78 3.55
937 2037 4.436998 GCGCTAGTGTCCACGCCT 62.437 66.667 0.00 0.00 45.35 5.52
1220 2323 0.459585 GTGCGCCGTTTATCCAGAGA 60.460 55.000 4.18 0.00 0.00 3.10
1230 2333 4.192317 GTTTATCCAGAGAGCCAATTCGT 58.808 43.478 0.00 0.00 0.00 3.85
1234 2337 1.757118 CCAGAGAGCCAATTCGTCCTA 59.243 52.381 0.00 0.00 0.00 2.94
1235 2338 2.168521 CCAGAGAGCCAATTCGTCCTAA 59.831 50.000 0.00 0.00 0.00 2.69
1251 2354 4.623171 CGTCCTAACTCTGCCCTTGTAATT 60.623 45.833 0.00 0.00 0.00 1.40
1253 2356 3.871594 CCTAACTCTGCCCTTGTAATTCG 59.128 47.826 0.00 0.00 0.00 3.34
1255 2411 2.973945 ACTCTGCCCTTGTAATTCGTC 58.026 47.619 0.00 0.00 0.00 4.20
1331 2487 2.503356 AGCTTCTCGGGAATGATTCTGT 59.497 45.455 0.00 0.00 0.00 3.41
1335 2491 5.627499 TTCTCGGGAATGATTCTGTTTTG 57.373 39.130 5.03 0.00 0.00 2.44
1362 2518 9.147732 GGATACTGGAGAAATGGGAATTTTAAT 57.852 33.333 0.00 0.00 0.00 1.40
1456 2619 1.581934 TATATGACTTGTGCTGCGGC 58.418 50.000 11.65 11.65 39.26 6.53
1569 2732 1.530419 ATTGCTGAACCCGGTTGCA 60.530 52.632 7.78 9.41 0.00 4.08
1585 2748 4.782116 CACTCATGCGTGCGTGCG 62.782 66.667 15.54 5.86 34.65 5.34
1601 2764 4.918060 CGTGCGTGCGTGTGTGTG 62.918 66.667 0.00 0.00 0.00 3.82
1603 2766 3.858989 TGCGTGCGTGTGTGTGTG 61.859 61.111 0.00 0.00 0.00 3.82
1604 2767 3.860125 GCGTGCGTGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
1605 2768 2.021243 CGTGCGTGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
1606 2769 2.735677 CGTGCGTGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
1609 2772 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1612 2775 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1613 2776 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1614 2777 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1615 2778 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1616 2779 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1617 2780 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1618 2781 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1619 2782 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1620 2783 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1622 2785 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1623 2786 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1624 2787 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1625 2788 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1626 2789 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1627 2790 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1630 2793 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1632 2795 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1633 2796 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
1701 2868 4.450976 TGTATCATTTCTATGCGCAGGTT 58.549 39.130 18.32 0.56 0.00 3.50
1913 3080 9.416794 TGTTTTCGTATAAAAATCACATGCAAT 57.583 25.926 0.00 0.00 31.29 3.56
2015 3182 2.750237 GGTGGATTGGGTGCCGAC 60.750 66.667 0.00 0.00 0.00 4.79
2185 3352 7.514784 TGCCTGTGATCAAATTAATATCTGG 57.485 36.000 0.00 0.00 0.00 3.86
2191 3358 9.473007 TGTGATCAAATTAATATCTGGTTGGAA 57.527 29.630 0.00 0.00 0.00 3.53
2360 3530 5.576384 ACACATAATTGCCAGCAATAAAACG 59.424 36.000 17.65 9.61 44.86 3.60
2662 3833 2.107726 GGGTCTTGGTCCCACTTTACTT 59.892 50.000 0.00 0.00 44.05 2.24
2871 4042 7.848223 TGGTTCATGTTCATACAACTATCAG 57.152 36.000 0.00 0.00 37.91 2.90
2960 4131 1.912371 GAAGCCTTTCGGGAGTTGCG 61.912 60.000 0.00 0.00 37.23 4.85
3248 4421 2.719531 TGTGGTTGCTAAACTGTCCA 57.280 45.000 0.00 0.00 36.48 4.02
3305 4478 2.693267 AGCCGTGGAGATAGGAAAAC 57.307 50.000 0.00 0.00 0.00 2.43
3308 4481 1.287425 CGTGGAGATAGGAAAACGCC 58.713 55.000 0.00 0.00 0.00 5.68
3330 4503 4.247258 CTGTTAGCCAAACGGTACATACA 58.753 43.478 0.00 0.00 41.30 2.29
3331 4504 4.247258 TGTTAGCCAAACGGTACATACAG 58.753 43.478 0.00 0.00 41.30 2.74
3668 4852 3.313012 TTACTGAACATGGTCCTGTCG 57.687 47.619 8.62 0.00 0.00 4.35
3672 4856 1.414550 TGAACATGGTCCTGTCGAACA 59.585 47.619 8.62 0.00 44.15 3.18
3684 4868 3.364023 CCTGTCGAACATAGTGAACGTTC 59.636 47.826 21.42 21.42 36.51 3.95
3692 4876 6.516355 CGAACATAGTGAACGTTCTTTTGATG 59.484 38.462 27.32 22.12 37.48 3.07
3991 5175 4.256110 TGATCATGCTCGACAGTTTTGAT 58.744 39.130 0.00 0.00 0.00 2.57
4224 5409 4.201970 ACCCTTGTTTTGTGTATGTTCACG 60.202 41.667 0.00 0.00 40.74 4.35
4332 5517 9.803315 GTTGTTACTGTGAGATTATGACTCATA 57.197 33.333 0.00 0.00 44.41 2.15
4397 5582 4.840680 TCGGTCATCTTGATATGGATCCTT 59.159 41.667 14.23 9.56 0.00 3.36
4474 5659 9.729023 CTCTATCTCGATTTATATAGGTTGCAG 57.271 37.037 0.00 0.00 0.00 4.41
4594 5782 5.754782 TGTTGCAATATTACTGGGTCTGAT 58.245 37.500 0.59 0.00 0.00 2.90
4598 5786 9.502091 GTTGCAATATTACTGGGTCTGATATTA 57.498 33.333 0.59 0.00 0.00 0.98
4611 5799 9.613428 TGGGTCTGATATTATAAAAGTGTTCAG 57.387 33.333 0.00 0.00 0.00 3.02
4730 5918 6.454795 TGACTGCATTTTTGTTTCTTATCCC 58.545 36.000 0.00 0.00 0.00 3.85
4793 5981 5.360714 ACAACTCATGGTGAAGACAAAATGT 59.639 36.000 0.00 0.00 0.00 2.71
4854 6042 2.590007 GGCCGCCTAGCATCAGTG 60.590 66.667 0.71 0.00 0.00 3.66
4917 6105 1.470890 CTGTGTCTCCTCTCCTCGAAC 59.529 57.143 0.00 0.00 0.00 3.95
4952 6140 1.808411 TGCTTCCGTTTGCTCCTTAG 58.192 50.000 0.00 0.00 0.00 2.18
4953 6141 1.087501 GCTTCCGTTTGCTCCTTAGG 58.912 55.000 0.00 0.00 0.00 2.69
4954 6142 1.087501 CTTCCGTTTGCTCCTTAGGC 58.912 55.000 0.00 0.00 0.00 3.93
4955 6143 0.322187 TTCCGTTTGCTCCTTAGGCC 60.322 55.000 0.00 0.00 0.00 5.19
4956 6144 1.002624 CCGTTTGCTCCTTAGGCCA 60.003 57.895 5.01 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.738389 CACACCAGGAGCACGTTTTT 59.262 50.000 0.00 0.00 0.00 1.94
11 12 1.101049 CCACACCAGGAGCACGTTTT 61.101 55.000 0.00 0.00 0.00 2.43
12 13 1.525995 CCACACCAGGAGCACGTTT 60.526 57.895 0.00 0.00 0.00 3.60
13 14 2.111043 CCACACCAGGAGCACGTT 59.889 61.111 0.00 0.00 0.00 3.99
14 15 2.265467 AAACCACACCAGGAGCACGT 62.265 55.000 0.00 0.00 0.00 4.49
15 16 1.101049 AAAACCACACCAGGAGCACG 61.101 55.000 0.00 0.00 0.00 5.34
16 17 1.111277 AAAAACCACACCAGGAGCAC 58.889 50.000 0.00 0.00 0.00 4.40
17 18 3.605946 AAAAACCACACCAGGAGCA 57.394 47.368 0.00 0.00 0.00 4.26
56 57 9.965824 ATGTTGATAGATTTTGACGAACTTTTT 57.034 25.926 0.00 0.00 0.00 1.94
57 58 9.398170 CATGTTGATAGATTTTGACGAACTTTT 57.602 29.630 0.00 0.00 0.00 2.27
58 59 8.023128 CCATGTTGATAGATTTTGACGAACTTT 58.977 33.333 0.00 0.00 0.00 2.66
59 60 7.362056 CCCATGTTGATAGATTTTGACGAACTT 60.362 37.037 0.00 0.00 0.00 2.66
60 61 6.094048 CCCATGTTGATAGATTTTGACGAACT 59.906 38.462 0.00 0.00 0.00 3.01
61 62 6.093495 TCCCATGTTGATAGATTTTGACGAAC 59.907 38.462 0.00 0.00 0.00 3.95
62 63 6.176896 TCCCATGTTGATAGATTTTGACGAA 58.823 36.000 0.00 0.00 0.00 3.85
63 64 5.739959 TCCCATGTTGATAGATTTTGACGA 58.260 37.500 0.00 0.00 0.00 4.20
64 65 6.484643 AGATCCCATGTTGATAGATTTTGACG 59.515 38.462 0.00 0.00 0.00 4.35
65 66 7.814264 AGATCCCATGTTGATAGATTTTGAC 57.186 36.000 0.00 0.00 0.00 3.18
66 67 8.717717 ACTAGATCCCATGTTGATAGATTTTGA 58.282 33.333 0.00 0.00 0.00 2.69
67 68 8.915057 ACTAGATCCCATGTTGATAGATTTTG 57.085 34.615 0.00 0.00 0.00 2.44
68 69 9.927081 AAACTAGATCCCATGTTGATAGATTTT 57.073 29.630 0.00 0.00 0.00 1.82
69 70 9.927081 AAAACTAGATCCCATGTTGATAGATTT 57.073 29.630 0.00 0.00 0.00 2.17
70 71 9.347240 CAAAACTAGATCCCATGTTGATAGATT 57.653 33.333 0.00 0.00 0.00 2.40
71 72 8.717717 TCAAAACTAGATCCCATGTTGATAGAT 58.282 33.333 0.00 0.00 0.00 1.98
72 73 8.089625 TCAAAACTAGATCCCATGTTGATAGA 57.910 34.615 0.00 0.00 0.00 1.98
73 74 8.737168 TTCAAAACTAGATCCCATGTTGATAG 57.263 34.615 0.00 0.00 0.00 2.08
74 75 9.527157 TTTTCAAAACTAGATCCCATGTTGATA 57.473 29.630 0.00 0.00 0.00 2.15
75 76 8.421249 TTTTCAAAACTAGATCCCATGTTGAT 57.579 30.769 0.00 0.00 0.00 2.57
76 77 7.831691 TTTTCAAAACTAGATCCCATGTTGA 57.168 32.000 0.00 0.00 0.00 3.18
77 78 8.526147 AGATTTTCAAAACTAGATCCCATGTTG 58.474 33.333 0.00 0.00 0.00 3.33
78 79 8.655935 AGATTTTCAAAACTAGATCCCATGTT 57.344 30.769 0.00 0.00 0.00 2.71
79 80 7.066284 CGAGATTTTCAAAACTAGATCCCATGT 59.934 37.037 0.00 0.00 0.00 3.21
80 81 7.280876 TCGAGATTTTCAAAACTAGATCCCATG 59.719 37.037 0.00 0.00 0.00 3.66
81 82 7.281100 GTCGAGATTTTCAAAACTAGATCCCAT 59.719 37.037 0.00 0.00 28.72 4.00
82 83 6.594159 GTCGAGATTTTCAAAACTAGATCCCA 59.406 38.462 0.00 0.00 28.72 4.37
83 84 6.237861 CGTCGAGATTTTCAAAACTAGATCCC 60.238 42.308 0.00 0.00 28.72 3.85
84 85 6.697152 CGTCGAGATTTTCAAAACTAGATCC 58.303 40.000 0.00 0.00 28.72 3.36
85 86 6.179193 GCGTCGAGATTTTCAAAACTAGATC 58.821 40.000 0.00 0.00 28.72 2.75
86 87 5.220228 CGCGTCGAGATTTTCAAAACTAGAT 60.220 40.000 0.00 0.00 28.72 1.98
87 88 4.089493 CGCGTCGAGATTTTCAAAACTAGA 59.911 41.667 0.00 0.00 0.00 2.43
88 89 4.089493 TCGCGTCGAGATTTTCAAAACTAG 59.911 41.667 5.77 0.00 0.00 2.57
89 90 3.982701 TCGCGTCGAGATTTTCAAAACTA 59.017 39.130 5.77 0.00 0.00 2.24
90 91 2.798283 TCGCGTCGAGATTTTCAAAACT 59.202 40.909 5.77 0.00 0.00 2.66
91 92 3.163642 TCGCGTCGAGATTTTCAAAAC 57.836 42.857 5.77 0.00 0.00 2.43
103 104 2.125326 ATTGGATCCCTCGCGTCGA 61.125 57.895 9.90 0.00 0.00 4.20
104 105 1.951130 CATTGGATCCCTCGCGTCG 60.951 63.158 9.90 0.00 0.00 5.12
105 106 0.034059 ATCATTGGATCCCTCGCGTC 59.966 55.000 9.90 0.00 0.00 5.19
106 107 0.469917 AATCATTGGATCCCTCGCGT 59.530 50.000 9.90 0.00 31.88 6.01
107 108 2.455674 TAATCATTGGATCCCTCGCG 57.544 50.000 9.90 0.00 31.88 5.87
108 109 4.338118 TGTTTTAATCATTGGATCCCTCGC 59.662 41.667 9.90 0.00 31.88 5.03
109 110 5.590259 ACTGTTTTAATCATTGGATCCCTCG 59.410 40.000 9.90 0.00 31.88 4.63
110 111 7.410120 AACTGTTTTAATCATTGGATCCCTC 57.590 36.000 9.90 0.00 31.88 4.30
111 112 7.454380 TCAAACTGTTTTAATCATTGGATCCCT 59.546 33.333 9.90 0.00 31.88 4.20
112 113 7.610865 TCAAACTGTTTTAATCATTGGATCCC 58.389 34.615 9.90 0.00 31.88 3.85
113 114 8.522830 TCTCAAACTGTTTTAATCATTGGATCC 58.477 33.333 4.20 4.20 31.88 3.36
121 122 9.748708 CTTCCAAATCTCAAACTGTTTTAATCA 57.251 29.630 2.41 0.00 0.00 2.57
122 123 8.703336 GCTTCCAAATCTCAAACTGTTTTAATC 58.297 33.333 2.41 0.00 0.00 1.75
123 124 8.203485 TGCTTCCAAATCTCAAACTGTTTTAAT 58.797 29.630 2.41 0.00 0.00 1.40
124 125 7.551585 TGCTTCCAAATCTCAAACTGTTTTAA 58.448 30.769 2.41 0.00 0.00 1.52
125 126 7.106439 TGCTTCCAAATCTCAAACTGTTTTA 57.894 32.000 2.41 0.00 0.00 1.52
126 127 5.976458 TGCTTCCAAATCTCAAACTGTTTT 58.024 33.333 2.41 0.00 0.00 2.43
127 128 5.596836 TGCTTCCAAATCTCAAACTGTTT 57.403 34.783 0.00 0.00 0.00 2.83
128 129 5.510179 CCATGCTTCCAAATCTCAAACTGTT 60.510 40.000 0.00 0.00 0.00 3.16
129 130 4.021719 CCATGCTTCCAAATCTCAAACTGT 60.022 41.667 0.00 0.00 0.00 3.55
130 131 4.021719 ACCATGCTTCCAAATCTCAAACTG 60.022 41.667 0.00 0.00 0.00 3.16
131 132 4.154942 ACCATGCTTCCAAATCTCAAACT 58.845 39.130 0.00 0.00 0.00 2.66
132 133 4.525912 ACCATGCTTCCAAATCTCAAAC 57.474 40.909 0.00 0.00 0.00 2.93
133 134 5.549742 AAACCATGCTTCCAAATCTCAAA 57.450 34.783 0.00 0.00 0.00 2.69
134 135 6.493115 TCTTAAACCATGCTTCCAAATCTCAA 59.507 34.615 0.00 0.00 0.00 3.02
135 136 6.009589 TCTTAAACCATGCTTCCAAATCTCA 58.990 36.000 0.00 0.00 0.00 3.27
136 137 6.375455 TCTCTTAAACCATGCTTCCAAATCTC 59.625 38.462 0.00 0.00 0.00 2.75
137 138 6.248433 TCTCTTAAACCATGCTTCCAAATCT 58.752 36.000 0.00 0.00 0.00 2.40
138 139 6.515272 TCTCTTAAACCATGCTTCCAAATC 57.485 37.500 0.00 0.00 0.00 2.17
139 140 8.593945 TTATCTCTTAAACCATGCTTCCAAAT 57.406 30.769 0.00 0.00 0.00 2.32
140 141 8.415950 TTTATCTCTTAAACCATGCTTCCAAA 57.584 30.769 0.00 0.00 0.00 3.28
141 142 8.303876 GTTTTATCTCTTAAACCATGCTTCCAA 58.696 33.333 0.00 0.00 29.47 3.53
142 143 7.450014 TGTTTTATCTCTTAAACCATGCTTCCA 59.550 33.333 0.00 0.00 34.21 3.53
143 144 7.826690 TGTTTTATCTCTTAAACCATGCTTCC 58.173 34.615 0.00 0.00 34.21 3.46
144 145 9.860898 AATGTTTTATCTCTTAAACCATGCTTC 57.139 29.630 0.00 0.00 34.32 3.86
197 198 0.536460 TCGCAACCTGGGAGTTTTCC 60.536 55.000 0.00 0.00 43.23 3.13
198 199 0.591659 GTCGCAACCTGGGAGTTTTC 59.408 55.000 0.00 0.00 40.09 2.29
199 200 0.106918 TGTCGCAACCTGGGAGTTTT 60.107 50.000 0.00 0.00 40.09 2.43
200 201 0.106918 TTGTCGCAACCTGGGAGTTT 60.107 50.000 0.00 0.00 40.09 2.66
201 202 0.535102 CTTGTCGCAACCTGGGAGTT 60.535 55.000 0.00 0.00 40.09 3.01
202 203 1.071471 CTTGTCGCAACCTGGGAGT 59.929 57.895 0.00 0.00 40.09 3.85
203 204 1.071471 ACTTGTCGCAACCTGGGAG 59.929 57.895 0.00 0.00 40.09 4.30
204 205 1.227823 CACTTGTCGCAACCTGGGA 60.228 57.895 0.00 0.00 36.96 4.37
205 206 2.260869 CCACTTGTCGCAACCTGGG 61.261 63.158 0.00 0.00 0.00 4.45
206 207 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
207 208 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
208 209 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
227 228 0.729116 ATAAGTGACGCACATGCAGC 59.271 50.000 11.58 0.00 42.21 5.25
228 229 1.005662 CGATAAGTGACGCACATGCAG 60.006 52.381 11.58 0.00 42.21 4.41
229 230 0.998669 CGATAAGTGACGCACATGCA 59.001 50.000 11.58 0.00 42.21 3.96
230 231 0.999406 ACGATAAGTGACGCACATGC 59.001 50.000 11.58 0.00 36.74 4.06
241 242 0.822164 CTTCCCCGGTCACGATAAGT 59.178 55.000 0.00 0.00 44.60 2.24
242 243 0.104304 CCTTCCCCGGTCACGATAAG 59.896 60.000 0.00 0.00 44.60 1.73
243 244 0.615544 ACCTTCCCCGGTCACGATAA 60.616 55.000 0.00 0.00 44.60 1.75
244 245 1.000739 ACCTTCCCCGGTCACGATA 59.999 57.895 0.00 0.00 44.60 2.92
245 246 2.284405 ACCTTCCCCGGTCACGAT 60.284 61.111 0.00 0.00 44.60 3.73
246 247 3.307906 CACCTTCCCCGGTCACGA 61.308 66.667 0.00 0.00 44.60 4.35
247 248 4.388499 CCACCTTCCCCGGTCACG 62.388 72.222 0.00 0.00 34.29 4.35
248 249 2.926242 TCCACCTTCCCCGGTCAC 60.926 66.667 0.00 0.00 34.29 3.67
249 250 2.606519 CTCCACCTTCCCCGGTCA 60.607 66.667 0.00 0.00 34.29 4.02
250 251 2.606826 ACTCCACCTTCCCCGGTC 60.607 66.667 0.00 0.00 34.29 4.79
251 252 2.928396 CACTCCACCTTCCCCGGT 60.928 66.667 0.00 0.00 37.93 5.28
252 253 2.465055 GAACACTCCACCTTCCCCGG 62.465 65.000 0.00 0.00 0.00 5.73
253 254 1.003718 GAACACTCCACCTTCCCCG 60.004 63.158 0.00 0.00 0.00 5.73
254 255 0.771755 AAGAACACTCCACCTTCCCC 59.228 55.000 0.00 0.00 0.00 4.81
255 256 2.230660 CAAAGAACACTCCACCTTCCC 58.769 52.381 0.00 0.00 0.00 3.97
256 257 2.932261 ACAAAGAACACTCCACCTTCC 58.068 47.619 0.00 0.00 0.00 3.46
257 258 4.275196 GGTTACAAAGAACACTCCACCTTC 59.725 45.833 0.00 0.00 0.00 3.46
258 259 4.204799 GGTTACAAAGAACACTCCACCTT 58.795 43.478 0.00 0.00 0.00 3.50
259 260 3.434596 GGGTTACAAAGAACACTCCACCT 60.435 47.826 0.00 0.00 29.58 4.00
260 261 2.882761 GGGTTACAAAGAACACTCCACC 59.117 50.000 0.00 0.00 29.58 4.61
261 262 2.546789 CGGGTTACAAAGAACACTCCAC 59.453 50.000 0.00 0.00 30.02 4.02
262 263 2.485835 CCGGGTTACAAAGAACACTCCA 60.486 50.000 0.00 0.00 30.02 3.86
263 264 2.148768 CCGGGTTACAAAGAACACTCC 58.851 52.381 0.00 0.00 30.02 3.85
264 265 2.148768 CCCGGGTTACAAAGAACACTC 58.851 52.381 14.18 0.00 30.02 3.51
265 266 1.202842 CCCCGGGTTACAAAGAACACT 60.203 52.381 21.85 0.00 30.02 3.55
266 267 1.241165 CCCCGGGTTACAAAGAACAC 58.759 55.000 21.85 0.00 0.00 3.32
267 268 0.110869 CCCCCGGGTTACAAAGAACA 59.889 55.000 21.85 0.00 0.00 3.18
268 269 1.246056 GCCCCCGGGTTACAAAGAAC 61.246 60.000 21.85 0.00 37.65 3.01
269 270 1.075305 GCCCCCGGGTTACAAAGAA 59.925 57.895 21.85 0.00 37.65 2.52
270 271 2.758434 GCCCCCGGGTTACAAAGA 59.242 61.111 21.85 0.00 37.65 2.52
271 272 2.361992 GGCCCCCGGGTTACAAAG 60.362 66.667 21.85 0.91 37.65 2.77
272 273 3.982111 GGGCCCCCGGGTTACAAA 61.982 66.667 21.85 0.00 37.65 2.83
289 290 2.818274 GTGGGCCGAGGCTAAACG 60.818 66.667 14.33 0.00 41.60 3.60
296 297 3.072468 TCGTAAGGTGGGCCGAGG 61.072 66.667 0.00 0.00 40.50 4.63
349 352 1.460305 ATAGGATGGGCCTCGCACT 60.460 57.895 4.53 0.00 46.97 4.40
380 383 5.233050 GTGGATCACATCTTACAACGATCTG 59.767 44.000 0.00 0.00 34.08 2.90
433 459 3.766691 CCCACGGTGTCCCCTACG 61.767 72.222 7.45 0.00 0.00 3.51
460 486 3.983494 ATCTCCGGGATGCGCTCG 61.983 66.667 9.73 7.49 32.69 5.03
524 1624 0.520412 CGCATAAACTTTCCGCACGG 60.520 55.000 1.73 1.73 0.00 4.94
566 1666 3.528597 ACGGAGTAGAGAAATCAAGCC 57.471 47.619 0.00 0.00 41.94 4.35
653 1753 9.326413 CGGGGTCATGGAATAATTATCTTATAC 57.674 37.037 0.00 0.00 0.00 1.47
654 1754 9.274354 TCGGGGTCATGGAATAATTATCTTATA 57.726 33.333 0.00 0.00 0.00 0.98
655 1755 8.158025 TCGGGGTCATGGAATAATTATCTTAT 57.842 34.615 0.00 0.00 0.00 1.73
656 1756 7.562259 TCGGGGTCATGGAATAATTATCTTA 57.438 36.000 0.00 0.00 0.00 2.10
657 1757 6.448369 TCGGGGTCATGGAATAATTATCTT 57.552 37.500 0.00 0.00 0.00 2.40
658 1758 6.448369 TTCGGGGTCATGGAATAATTATCT 57.552 37.500 0.00 0.00 0.00 1.98
659 1759 7.519032 TTTTCGGGGTCATGGAATAATTATC 57.481 36.000 0.00 0.00 0.00 1.75
660 1760 7.906199 TTTTTCGGGGTCATGGAATAATTAT 57.094 32.000 0.00 0.00 0.00 1.28
700 1800 9.983024 TCTGGTTGATAATACCCTTTTCATAAA 57.017 29.630 0.00 0.00 34.66 1.40
702 1802 9.573166 CATCTGGTTGATAATACCCTTTTCATA 57.427 33.333 0.00 0.00 34.66 2.15
703 1803 7.014615 GCATCTGGTTGATAATACCCTTTTCAT 59.985 37.037 0.00 0.00 34.66 2.57
704 1804 6.321181 GCATCTGGTTGATAATACCCTTTTCA 59.679 38.462 0.00 0.00 34.66 2.69
705 1805 6.547510 AGCATCTGGTTGATAATACCCTTTTC 59.452 38.462 0.00 0.00 34.66 2.29
706 1806 6.435164 AGCATCTGGTTGATAATACCCTTTT 58.565 36.000 0.00 0.00 34.66 2.27
707 1807 6.018433 AGCATCTGGTTGATAATACCCTTT 57.982 37.500 0.00 0.00 34.66 3.11
708 1808 5.653255 AGCATCTGGTTGATAATACCCTT 57.347 39.130 0.00 0.00 34.66 3.95
709 1809 6.330250 ACTTAGCATCTGGTTGATAATACCCT 59.670 38.462 0.00 0.00 34.66 4.34
710 1810 6.534634 ACTTAGCATCTGGTTGATAATACCC 58.465 40.000 0.00 0.00 34.66 3.69
711 1811 8.451908 AAACTTAGCATCTGGTTGATAATACC 57.548 34.615 0.00 0.00 33.36 2.73
715 1815 9.555727 GGTATAAACTTAGCATCTGGTTGATAA 57.444 33.333 0.00 0.00 33.36 1.75
716 1816 7.870954 CGGTATAAACTTAGCATCTGGTTGATA 59.129 37.037 0.00 0.00 33.36 2.15
717 1817 6.706270 CGGTATAAACTTAGCATCTGGTTGAT 59.294 38.462 0.00 0.00 35.40 2.57
718 1818 6.046593 CGGTATAAACTTAGCATCTGGTTGA 58.953 40.000 0.00 0.00 0.00 3.18
719 1819 5.815740 ACGGTATAAACTTAGCATCTGGTTG 59.184 40.000 0.00 0.00 0.00 3.77
720 1820 5.985911 ACGGTATAAACTTAGCATCTGGTT 58.014 37.500 0.00 0.00 0.00 3.67
721 1821 5.609533 ACGGTATAAACTTAGCATCTGGT 57.390 39.130 0.00 0.00 0.00 4.00
722 1822 7.208080 AGTAACGGTATAAACTTAGCATCTGG 58.792 38.462 0.00 0.00 0.00 3.86
723 1823 7.113124 CGAGTAACGGTATAAACTTAGCATCTG 59.887 40.741 0.00 0.00 38.46 2.90
724 1824 7.012704 TCGAGTAACGGTATAAACTTAGCATCT 59.987 37.037 0.00 0.00 42.82 2.90
725 1825 7.134815 TCGAGTAACGGTATAAACTTAGCATC 58.865 38.462 0.00 0.00 42.82 3.91
726 1826 7.031226 TCGAGTAACGGTATAAACTTAGCAT 57.969 36.000 0.00 0.00 42.82 3.79
727 1827 6.435430 TCGAGTAACGGTATAAACTTAGCA 57.565 37.500 0.00 0.00 42.82 3.49
728 1828 5.397828 GCTCGAGTAACGGTATAAACTTAGC 59.602 44.000 15.13 0.00 42.82 3.09
729 1829 5.618798 CGCTCGAGTAACGGTATAAACTTAG 59.381 44.000 15.13 0.00 42.82 2.18
730 1830 5.064707 ACGCTCGAGTAACGGTATAAACTTA 59.935 40.000 15.13 0.00 42.82 2.24
731 1831 4.142600 ACGCTCGAGTAACGGTATAAACTT 60.143 41.667 15.13 0.00 42.82 2.66
732 1832 3.375299 ACGCTCGAGTAACGGTATAAACT 59.625 43.478 15.13 0.00 42.82 2.66
733 1833 3.685058 ACGCTCGAGTAACGGTATAAAC 58.315 45.455 15.13 0.00 42.82 2.01
734 1834 3.623060 AGACGCTCGAGTAACGGTATAAA 59.377 43.478 15.13 0.00 42.82 1.40
735 1835 3.198068 AGACGCTCGAGTAACGGTATAA 58.802 45.455 15.13 0.00 42.82 0.98
736 1836 2.797156 GAGACGCTCGAGTAACGGTATA 59.203 50.000 15.13 0.00 42.82 1.47
737 1837 1.596727 GAGACGCTCGAGTAACGGTAT 59.403 52.381 15.13 2.19 42.82 2.73
738 1838 1.002366 GAGACGCTCGAGTAACGGTA 58.998 55.000 15.13 0.00 42.82 4.02
739 1839 0.673022 AGAGACGCTCGAGTAACGGT 60.673 55.000 15.13 4.71 42.82 4.83
740 1840 0.447011 AAGAGACGCTCGAGTAACGG 59.553 55.000 15.13 1.41 42.82 4.44
741 1841 2.159680 AGAAAGAGACGCTCGAGTAACG 60.160 50.000 15.13 11.72 44.09 3.18
742 1842 3.125658 AGAGAAAGAGACGCTCGAGTAAC 59.874 47.826 15.13 5.59 35.36 2.50
743 1843 3.336468 AGAGAAAGAGACGCTCGAGTAA 58.664 45.455 15.13 0.00 35.36 2.24
744 1844 2.931325 GAGAGAAAGAGACGCTCGAGTA 59.069 50.000 15.13 0.00 35.36 2.59
745 1845 1.735571 GAGAGAAAGAGACGCTCGAGT 59.264 52.381 15.13 0.00 35.36 4.18
746 1846 1.063469 GGAGAGAAAGAGACGCTCGAG 59.937 57.143 8.45 8.45 35.61 4.04
747 1847 1.088306 GGAGAGAAAGAGACGCTCGA 58.912 55.000 0.00 0.00 35.61 4.04
748 1848 0.805614 TGGAGAGAAAGAGACGCTCG 59.194 55.000 0.00 0.00 35.61 5.03
749 1849 2.230266 ACTTGGAGAGAAAGAGACGCTC 59.770 50.000 0.00 0.00 34.41 5.03
750 1850 2.230266 GACTTGGAGAGAAAGAGACGCT 59.770 50.000 0.00 0.00 0.00 5.07
751 1851 2.601804 GACTTGGAGAGAAAGAGACGC 58.398 52.381 0.00 0.00 0.00 5.19
752 1852 2.414824 CCGACTTGGAGAGAAAGAGACG 60.415 54.545 0.00 0.00 42.00 4.18
753 1853 2.559231 ACCGACTTGGAGAGAAAGAGAC 59.441 50.000 0.00 0.00 42.00 3.36
754 1854 2.820787 GACCGACTTGGAGAGAAAGAGA 59.179 50.000 0.00 0.00 42.00 3.10
755 1855 2.823154 AGACCGACTTGGAGAGAAAGAG 59.177 50.000 0.00 0.00 42.00 2.85
756 1856 2.820787 GAGACCGACTTGGAGAGAAAGA 59.179 50.000 0.00 0.00 42.00 2.52
757 1857 2.414824 CGAGACCGACTTGGAGAGAAAG 60.415 54.545 0.00 0.00 42.00 2.62
758 1858 1.540267 CGAGACCGACTTGGAGAGAAA 59.460 52.381 0.00 0.00 42.00 2.52
759 1859 1.166129 CGAGACCGACTTGGAGAGAA 58.834 55.000 0.00 0.00 42.00 2.87
760 1860 2.855887 CGAGACCGACTTGGAGAGA 58.144 57.895 0.00 0.00 42.00 3.10
766 1866 2.432628 GGCACCGAGACCGACTTG 60.433 66.667 0.00 0.00 38.22 3.16
776 1876 4.077184 GATGTGGGTCGGCACCGA 62.077 66.667 7.89 7.89 44.91 4.69
1220 2323 2.678190 GCAGAGTTAGGACGAATTGGCT 60.678 50.000 0.00 0.00 0.00 4.75
1230 2333 4.382685 CGAATTACAAGGGCAGAGTTAGGA 60.383 45.833 0.00 0.00 0.00 2.94
1234 2337 3.335579 GACGAATTACAAGGGCAGAGTT 58.664 45.455 0.00 0.00 0.00 3.01
1235 2338 2.354805 GGACGAATTACAAGGGCAGAGT 60.355 50.000 0.00 0.00 0.00 3.24
1251 2354 2.304092 ACAGACACACAGTTAGGACGA 58.696 47.619 0.00 0.00 0.00 4.20
1253 2356 8.684520 ACTAATATACAGACACACAGTTAGGAC 58.315 37.037 0.00 0.00 0.00 3.85
1293 2449 5.494724 AGAAGCTCAATGAAGTAAGATGCA 58.505 37.500 0.00 0.00 0.00 3.96
1331 2487 4.293634 TCCCATTTCTCCAGTATCCCAAAA 59.706 41.667 0.00 0.00 0.00 2.44
1335 2491 4.731313 ATTCCCATTTCTCCAGTATCCC 57.269 45.455 0.00 0.00 0.00 3.85
1552 2715 2.124109 TGCAACCGGGTTCAGCAA 60.124 55.556 19.17 6.42 31.42 3.91
1584 2747 4.918060 CACACACACGCACGCACG 62.918 66.667 0.00 0.00 39.50 5.34
1585 2748 3.860125 ACACACACACGCACGCAC 61.860 61.111 0.00 0.00 0.00 5.34
1587 2750 3.860125 ACACACACACACGCACGC 61.860 61.111 0.00 0.00 0.00 5.34
1588 2751 2.021243 CACACACACACACGCACG 59.979 61.111 0.00 0.00 0.00 5.34
1589 2752 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
1591 2754 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
1592 2755 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
1593 2756 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1595 2758 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1596 2759 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1597 2760 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1599 2762 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1601 2764 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1603 2766 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1604 2767 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1605 2768 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1606 2769 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1609 2772 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1612 2775 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1613 2776 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1614 2777 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
1615 2778 3.126171 ACAATACACACACACACACACAC 59.874 43.478 0.00 0.00 0.00 3.82
1616 2779 3.339141 ACAATACACACACACACACACA 58.661 40.909 0.00 0.00 0.00 3.72
1617 2780 4.094911 CAACAATACACACACACACACAC 58.905 43.478 0.00 0.00 0.00 3.82
1618 2781 3.753797 ACAACAATACACACACACACACA 59.246 39.130 0.00 0.00 0.00 3.72
1619 2782 4.339429 GACAACAATACACACACACACAC 58.661 43.478 0.00 0.00 0.00 3.82
1620 2783 3.375610 GGACAACAATACACACACACACA 59.624 43.478 0.00 0.00 0.00 3.72
1622 2785 3.874543 GAGGACAACAATACACACACACA 59.125 43.478 0.00 0.00 0.00 3.72
1623 2786 4.127171 AGAGGACAACAATACACACACAC 58.873 43.478 0.00 0.00 0.00 3.82
1624 2787 4.415881 AGAGGACAACAATACACACACA 57.584 40.909 0.00 0.00 0.00 3.72
1625 2788 5.751243 AAAGAGGACAACAATACACACAC 57.249 39.130 0.00 0.00 0.00 3.82
1626 2789 6.119536 AGAAAAGAGGACAACAATACACACA 58.880 36.000 0.00 0.00 0.00 3.72
1627 2790 6.619801 AGAAAAGAGGACAACAATACACAC 57.380 37.500 0.00 0.00 0.00 3.82
1701 2868 3.340928 CACATCTGAGTGCATTCCTTGA 58.659 45.455 6.77 3.27 32.04 3.02
1893 3060 9.890085 CAAGAAATTGCATGTGATTTTTATACG 57.110 29.630 8.98 0.00 0.00 3.06
1913 3080 5.887598 AGCACATATGATAAGTGGCAAGAAA 59.112 36.000 10.38 0.00 33.98 2.52
2015 3182 2.346803 CCTACCATTCTGACACCAACG 58.653 52.381 0.00 0.00 0.00 4.10
2185 3352 9.447040 GTTATTGAAAGTGTAGTCTTTTCCAAC 57.553 33.333 0.00 0.00 37.70 3.77
2191 3358 8.691661 ACCATGTTATTGAAAGTGTAGTCTTT 57.308 30.769 0.00 0.00 39.87 2.52
2426 3597 6.239289 CCTGACTGCAAGGAAATAAAAGGAAA 60.239 38.462 0.00 0.00 39.30 3.13
2662 3833 2.264005 AAGTGCCAAATGTCCGTACA 57.736 45.000 0.00 0.00 40.69 2.90
2871 4042 8.587952 AGAATTGCAGGTAACACAAATTAAAC 57.412 30.769 0.00 0.00 38.24 2.01
3305 4478 0.671163 TACCGTTTGGCTAACAGGCG 60.671 55.000 17.13 3.41 44.78 5.52
3308 4481 4.247258 TGTATGTACCGTTTGGCTAACAG 58.753 43.478 12.10 3.19 39.70 3.16
3330 4503 4.262592 CCCATTTGGCTAACAAGCTTTTCT 60.263 41.667 0.00 0.00 40.82 2.52
3331 4504 3.996363 CCCATTTGGCTAACAAGCTTTTC 59.004 43.478 0.00 0.00 40.82 2.29
3350 4523 3.785325 TGTGGACAATCCTGATAATCCCA 59.215 43.478 6.98 0.00 37.46 4.37
3574 4749 9.796120 CACCTTTCTTGTTTGAAGTTTACATAA 57.204 29.630 0.00 0.00 0.00 1.90
3641 4825 9.561069 GACAGGACCATGTTCAGTAATAATAAT 57.439 33.333 0.00 0.00 32.25 1.28
3991 5175 0.031111 ATGCTACTCTGGCCCAGGTA 60.031 55.000 11.68 10.92 31.51 3.08
4224 5409 5.240844 AGCCAGTACATTACCAACTGAAAAC 59.759 40.000 3.37 0.00 42.59 2.43
4262 5447 1.068588 TCCAGAGGTATGAAATCGCCG 59.931 52.381 0.00 0.00 0.00 6.46
4314 5499 5.600069 ACTGGCTATGAGTCATAATCTCACA 59.400 40.000 13.74 6.23 43.32 3.58
4332 5517 3.957497 TGTTACAACCAAAATCACTGGCT 59.043 39.130 0.00 0.00 37.48 4.75
4397 5582 4.406456 ACAGGCATAAACCAAACAGATCA 58.594 39.130 0.00 0.00 0.00 2.92
4504 5692 7.119387 TCAGACAGTTTATCACTAGAGGATCA 58.881 38.462 0.00 0.00 31.62 2.92
4594 5782 8.548877 AGGAGGAAGCTGAACACTTTTATAATA 58.451 33.333 0.00 0.00 0.00 0.98
4598 5786 5.006386 CAGGAGGAAGCTGAACACTTTTAT 58.994 41.667 0.00 0.00 0.00 1.40
4611 5799 2.185608 GACGAGGCAGGAGGAAGC 59.814 66.667 0.00 0.00 0.00 3.86
4686 5874 6.596888 CAGTCAATCAGTCCAGTCATAAACAT 59.403 38.462 0.00 0.00 0.00 2.71
4730 5918 4.790962 AGGCCACCAGCTCATGCG 62.791 66.667 5.01 0.00 45.42 4.73
4917 6105 4.666655 CGGAAGCATCAAACAGAGTTTACG 60.667 45.833 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.