Multiple sequence alignment - TraesCS4B01G210700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G210700 chr4B 100.000 5145 0 0 1 5145 449188662 449193806 0.000000e+00 9502.0
1 TraesCS4B01G210700 chr4B 90.066 302 19 3 4855 5145 583784149 583784450 1.050000e-101 381.0
2 TraesCS4B01G210700 chr4B 85.714 231 23 8 349 576 634416202 634416425 8.610000e-58 235.0
3 TraesCS4B01G210700 chr4B 82.569 218 18 11 361 576 16385228 16385427 1.900000e-39 174.0
4 TraesCS4B01G210700 chr4D 94.798 4364 149 33 821 5145 363687343 363691667 0.000000e+00 6730.0
5 TraesCS4B01G210700 chr4A 94.996 4077 118 34 821 4859 101513817 101509789 0.000000e+00 6320.0
6 TraesCS4B01G210700 chr4A 86.939 245 19 7 1 236 106900791 106901031 3.950000e-66 263.0
7 TraesCS4B01G210700 chr4A 94.118 51 2 1 777 826 101513896 101513846 5.520000e-10 76.8
8 TraesCS4B01G210700 chr7B 91.334 577 48 2 2 576 641196464 641197040 0.000000e+00 787.0
9 TraesCS4B01G210700 chr7B 90.265 113 10 1 465 576 632869808 632869920 4.150000e-31 147.0
10 TraesCS4B01G210700 chr7B 90.385 52 4 1 4856 4906 516875062 516875113 3.320000e-07 67.6
11 TraesCS4B01G210700 chr3A 93.814 291 17 1 4855 5145 747601345 747601634 2.200000e-118 436.0
12 TraesCS4B01G210700 chr3A 82.770 296 24 11 246 540 701309965 701310234 6.660000e-59 239.0
13 TraesCS4B01G210700 chr6D 88.473 347 34 5 235 578 448416940 448416597 1.030000e-111 414.0
14 TraesCS4B01G210700 chr6D 90.941 287 24 2 4858 5143 200489958 200489673 8.080000e-103 385.0
15 TraesCS4B01G210700 chr1D 90.333 300 16 4 4858 5145 296280749 296280451 1.050000e-101 381.0
16 TraesCS4B01G210700 chr1D 84.286 350 30 11 246 576 33991921 33992264 8.310000e-83 318.0
17 TraesCS4B01G210700 chr1D 83.128 243 29 4 2 236 13972719 13972957 1.450000e-50 211.0
18 TraesCS4B01G210700 chr1D 82.927 246 27 6 1 236 14004011 14004251 1.880000e-49 207.0
19 TraesCS4B01G210700 chr5B 93.625 251 16 0 4895 5145 321482536 321482286 4.860000e-100 375.0
20 TraesCS4B01G210700 chr5B 87.458 295 30 4 4856 5145 622544656 622544948 2.970000e-87 333.0
21 TraesCS4B01G210700 chr5B 87.243 243 24 5 1 236 704222055 704221813 2.360000e-68 270.0
22 TraesCS4B01G210700 chr3D 93.676 253 13 3 4895 5145 159768546 159768797 4.860000e-100 375.0
23 TraesCS4B01G210700 chr3D 87.132 272 27 6 307 576 566967025 566967290 8.370000e-78 302.0
24 TraesCS4B01G210700 chr3D 84.615 117 17 1 120 236 125686178 125686293 1.170000e-21 115.0
25 TraesCS4B01G210700 chr6A 89.109 303 20 7 4855 5145 250721507 250721808 1.050000e-96 364.0
26 TraesCS4B01G210700 chr6A 90.141 142 13 1 430 570 45329526 45329667 3.160000e-42 183.0
27 TraesCS4B01G210700 chr1B 88.158 304 23 3 4855 5145 263573508 263573205 2.950000e-92 350.0
28 TraesCS4B01G210700 chr2A 86.029 272 30 5 307 576 12161035 12161300 8.430000e-73 285.0
29 TraesCS4B01G210700 chr2A 95.000 60 3 0 4856 4915 70652443 70652502 1.530000e-15 95.3
30 TraesCS4B01G210700 chr5D 90.345 145 12 2 94 236 488217871 488218015 6.800000e-44 189.0
31 TraesCS4B01G210700 chr7D 86.301 146 17 3 94 236 45590119 45589974 6.900000e-34 156.0
32 TraesCS4B01G210700 chr2D 86.087 115 14 2 120 234 79528898 79529010 7.000000e-24 122.0
33 TraesCS4B01G210700 chr2B 83.333 132 11 1 4856 4976 390606724 390606593 1.510000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G210700 chr4B 449188662 449193806 5144 False 9502.0 9502 100.000 1 5145 1 chr4B.!!$F2 5144
1 TraesCS4B01G210700 chr4D 363687343 363691667 4324 False 6730.0 6730 94.798 821 5145 1 chr4D.!!$F1 4324
2 TraesCS4B01G210700 chr4A 101509789 101513896 4107 True 3198.4 6320 94.557 777 4859 2 chr4A.!!$R1 4082
3 TraesCS4B01G210700 chr7B 641196464 641197040 576 False 787.0 787 91.334 2 576 1 chr7B.!!$F3 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 408 0.032615 AGGAGGAAGATGAGGAGCGT 60.033 55.000 0.00 0.00 0.00 5.07 F
853 889 0.041312 CGACAAGCTTCGGTTGGTTG 60.041 55.000 0.00 11.42 44.10 3.77 F
854 890 0.317854 GACAAGCTTCGGTTGGTTGC 60.318 55.000 0.00 0.00 44.10 4.17 F
1142 1180 0.534412 CAGCTTCTGATGTCCGAGGT 59.466 55.000 0.00 0.00 32.44 3.85 F
2060 2109 0.599728 GGAGGATGCTCTAGCGCAAG 60.600 60.000 12.08 4.98 44.06 4.01 F
3320 3414 1.202976 AGCTGCTGATGGAGGTGTTTT 60.203 47.619 0.00 0.00 40.75 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1274 1312 0.318441 TTGTTCCGGCAGACAGAGAG 59.682 55.000 0.00 0.0 0.00 3.20 R
1837 1886 1.069227 CAGGCAACAAACGGCTTAGAC 60.069 52.381 0.00 0.0 37.12 2.59 R
2680 2738 1.089920 CACCTACAGCAACATCTGGC 58.910 55.000 0.00 0.0 38.36 4.85 R
2951 3042 2.358898 CCATAGCACCATGCCTAAACAC 59.641 50.000 0.00 0.0 46.52 3.32 R
3692 3786 2.169352 TCTCACTTTGGCCATCTAGCTC 59.831 50.000 6.09 0.0 0.00 4.09 R
4175 4269 1.032014 GTGGTGCAAGTGGTGTCATT 58.968 50.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.100458 ACCAGTGATTAAAATTGCTACATCC 57.900 36.000 0.00 0.00 0.00 3.51
27 28 6.663093 ACCAGTGATTAAAATTGCTACATCCA 59.337 34.615 0.00 0.00 0.00 3.41
41 42 0.848735 CATCCATGATGAGTGGGGGT 59.151 55.000 0.00 0.00 42.09 4.95
74 75 1.066908 TGCGACCAAAGGAAAAAGCTG 59.933 47.619 0.00 0.00 0.00 4.24
77 78 3.243267 GCGACCAAAGGAAAAAGCTGTAA 60.243 43.478 0.00 0.00 0.00 2.41
124 125 3.782244 GCACGAGAGCTGCAACCG 61.782 66.667 1.02 4.21 37.82 4.44
126 127 2.356313 ACGAGAGCTGCAACCGTG 60.356 61.111 1.02 0.00 31.85 4.94
132 133 1.724582 GAGCTGCAACCGTGGTTTGT 61.725 55.000 0.44 0.00 36.00 2.83
166 167 1.669502 GCGACCAATTTTGCTGCATCA 60.670 47.619 1.84 0.00 0.00 3.07
171 172 3.259876 ACCAATTTTGCTGCATCAGTGAT 59.740 39.130 1.84 0.00 33.43 3.06
172 173 4.463539 ACCAATTTTGCTGCATCAGTGATA 59.536 37.500 5.03 0.00 33.43 2.15
179 180 1.001746 CTGCATCAGTGATAGCGGGAT 59.998 52.381 20.12 0.00 0.00 3.85
272 273 1.377725 ATGGCGGCTTCCAACTCAG 60.378 57.895 11.43 0.00 39.96 3.35
339 340 3.369921 GCAAGGGCCTTGAGGTTG 58.630 61.111 42.69 21.93 43.42 3.77
340 341 2.278330 GCAAGGGCCTTGAGGTTGG 61.278 63.158 42.69 20.13 43.42 3.77
341 342 1.460255 CAAGGGCCTTGAGGTTGGA 59.540 57.895 37.45 0.00 43.42 3.53
342 343 0.610232 CAAGGGCCTTGAGGTTGGAG 60.610 60.000 37.45 10.21 43.42 3.86
343 344 1.793820 AAGGGCCTTGAGGTTGGAGG 61.794 60.000 20.19 0.00 37.57 4.30
344 345 2.539081 GGGCCTTGAGGTTGGAGGT 61.539 63.158 0.84 0.00 37.57 3.85
345 346 1.205460 GGGCCTTGAGGTTGGAGGTA 61.205 60.000 0.84 0.00 37.57 3.08
346 347 0.253327 GGCCTTGAGGTTGGAGGTAG 59.747 60.000 0.00 0.00 37.57 3.18
347 348 0.984995 GCCTTGAGGTTGGAGGTAGT 59.015 55.000 0.00 0.00 37.57 2.73
348 349 1.339151 GCCTTGAGGTTGGAGGTAGTG 60.339 57.143 0.00 0.00 37.57 2.74
349 350 2.257207 CCTTGAGGTTGGAGGTAGTGA 58.743 52.381 0.00 0.00 0.00 3.41
350 351 2.028020 CCTTGAGGTTGGAGGTAGTGAC 60.028 54.545 0.00 0.00 0.00 3.67
363 364 3.578456 GTGACCTGCACGGGATTG 58.422 61.111 1.58 0.00 37.83 2.67
364 365 2.040544 GTGACCTGCACGGGATTGG 61.041 63.158 1.58 0.00 37.83 3.16
365 366 2.438434 GACCTGCACGGGATTGGG 60.438 66.667 1.58 0.00 36.97 4.12
366 367 3.995506 GACCTGCACGGGATTGGGG 62.996 68.421 1.58 0.00 36.97 4.96
368 369 4.431131 CTGCACGGGATTGGGGCT 62.431 66.667 0.00 0.00 0.00 5.19
369 370 3.012119 TGCACGGGATTGGGGCTA 61.012 61.111 0.00 0.00 0.00 3.93
370 371 2.203209 GCACGGGATTGGGGCTAG 60.203 66.667 0.00 0.00 0.00 3.42
371 372 3.043999 GCACGGGATTGGGGCTAGT 62.044 63.158 0.00 0.00 0.00 2.57
372 373 1.146263 CACGGGATTGGGGCTAGTC 59.854 63.158 0.00 0.00 0.00 2.59
373 374 2.421739 CGGGATTGGGGCTAGTCG 59.578 66.667 0.00 0.00 0.00 4.18
374 375 2.829592 GGGATTGGGGCTAGTCGG 59.170 66.667 0.00 0.00 0.00 4.79
375 376 2.111251 GGATTGGGGCTAGTCGGC 59.889 66.667 0.00 0.00 37.49 5.54
376 377 2.280186 GATTGGGGCTAGTCGGCG 60.280 66.667 0.00 0.00 39.52 6.46
377 378 3.081409 ATTGGGGCTAGTCGGCGT 61.081 61.111 6.85 0.00 39.52 5.68
378 379 2.588856 GATTGGGGCTAGTCGGCGTT 62.589 60.000 6.85 0.00 39.52 4.84
379 380 2.869503 ATTGGGGCTAGTCGGCGTTG 62.870 60.000 6.85 0.00 39.52 4.10
380 381 4.832608 GGGGCTAGTCGGCGTTGG 62.833 72.222 6.85 0.00 39.52 3.77
381 382 4.832608 GGGCTAGTCGGCGTTGGG 62.833 72.222 6.85 0.00 39.52 4.12
382 383 3.766691 GGCTAGTCGGCGTTGGGA 61.767 66.667 6.85 0.00 0.00 4.37
383 384 2.499685 GCTAGTCGGCGTTGGGAT 59.500 61.111 6.85 0.00 0.00 3.85
384 385 1.591863 GCTAGTCGGCGTTGGGATC 60.592 63.158 6.85 0.00 0.00 3.36
385 386 1.067582 CTAGTCGGCGTTGGGATCC 59.932 63.158 6.85 1.92 0.00 3.36
386 387 2.679132 CTAGTCGGCGTTGGGATCCG 62.679 65.000 6.85 0.00 44.16 4.18
389 390 2.890474 CGGCGTTGGGATCCGAAG 60.890 66.667 9.78 5.63 45.53 3.79
405 406 1.068434 CGAAGGAGGAAGATGAGGAGC 59.932 57.143 0.00 0.00 0.00 4.70
406 407 1.068434 GAAGGAGGAAGATGAGGAGCG 59.932 57.143 0.00 0.00 0.00 5.03
407 408 0.032615 AGGAGGAAGATGAGGAGCGT 60.033 55.000 0.00 0.00 0.00 5.07
408 409 0.103937 GGAGGAAGATGAGGAGCGTG 59.896 60.000 0.00 0.00 0.00 5.34
409 410 0.103937 GAGGAAGATGAGGAGCGTGG 59.896 60.000 0.00 0.00 0.00 4.94
410 411 1.522580 GGAAGATGAGGAGCGTGGC 60.523 63.158 0.00 0.00 0.00 5.01
411 412 1.522580 GAAGATGAGGAGCGTGGCC 60.523 63.158 0.00 0.00 0.00 5.36
412 413 2.244117 GAAGATGAGGAGCGTGGCCA 62.244 60.000 0.00 0.00 0.00 5.36
413 414 2.512515 GATGAGGAGCGTGGCCAC 60.513 66.667 26.78 26.78 0.00 5.01
414 415 4.101448 ATGAGGAGCGTGGCCACC 62.101 66.667 29.95 21.53 0.00 4.61
416 417 4.767255 GAGGAGCGTGGCCACCAG 62.767 72.222 29.95 17.96 32.34 4.00
432 433 3.222855 AGCGCGCTAGGCTGAGAT 61.223 61.111 35.79 3.45 39.77 2.75
433 434 1.899054 AGCGCGCTAGGCTGAGATA 60.899 57.895 35.79 0.00 39.77 1.98
434 435 1.443533 GCGCGCTAGGCTGAGATAG 60.444 63.158 26.67 0.00 40.44 2.08
435 436 1.857318 GCGCGCTAGGCTGAGATAGA 61.857 60.000 26.67 0.00 40.44 1.98
436 437 0.593618 CGCGCTAGGCTGAGATAGAA 59.406 55.000 5.56 0.00 40.44 2.10
437 438 1.400888 CGCGCTAGGCTGAGATAGAAG 60.401 57.143 5.56 0.00 40.44 2.85
438 439 1.067915 GCGCTAGGCTGAGATAGAAGG 60.068 57.143 0.00 0.00 39.11 3.46
439 440 2.509569 CGCTAGGCTGAGATAGAAGGA 58.490 52.381 0.00 0.00 0.00 3.36
440 441 2.487762 CGCTAGGCTGAGATAGAAGGAG 59.512 54.545 0.00 0.00 0.00 3.69
441 442 2.825532 GCTAGGCTGAGATAGAAGGAGG 59.174 54.545 0.00 0.00 0.00 4.30
442 443 2.397044 AGGCTGAGATAGAAGGAGGG 57.603 55.000 0.00 0.00 0.00 4.30
443 444 1.132881 AGGCTGAGATAGAAGGAGGGG 60.133 57.143 0.00 0.00 0.00 4.79
444 445 1.133009 GGCTGAGATAGAAGGAGGGGA 60.133 57.143 0.00 0.00 0.00 4.81
445 446 1.967779 GCTGAGATAGAAGGAGGGGAC 59.032 57.143 0.00 0.00 0.00 4.46
464 465 3.842869 CGGGAGGAAGAAGGAACAG 57.157 57.895 0.00 0.00 0.00 3.16
465 466 0.250513 CGGGAGGAAGAAGGAACAGG 59.749 60.000 0.00 0.00 0.00 4.00
466 467 1.657804 GGGAGGAAGAAGGAACAGGA 58.342 55.000 0.00 0.00 0.00 3.86
467 468 1.557371 GGGAGGAAGAAGGAACAGGAG 59.443 57.143 0.00 0.00 0.00 3.69
468 469 2.541466 GGAGGAAGAAGGAACAGGAGA 58.459 52.381 0.00 0.00 0.00 3.71
469 470 2.907042 GGAGGAAGAAGGAACAGGAGAA 59.093 50.000 0.00 0.00 0.00 2.87
470 471 3.055458 GGAGGAAGAAGGAACAGGAGAAG 60.055 52.174 0.00 0.00 0.00 2.85
471 472 3.835395 GAGGAAGAAGGAACAGGAGAAGA 59.165 47.826 0.00 0.00 0.00 2.87
472 473 4.434195 AGGAAGAAGGAACAGGAGAAGAT 58.566 43.478 0.00 0.00 0.00 2.40
473 474 5.594777 AGGAAGAAGGAACAGGAGAAGATA 58.405 41.667 0.00 0.00 0.00 1.98
474 475 6.026186 AGGAAGAAGGAACAGGAGAAGATAA 58.974 40.000 0.00 0.00 0.00 1.75
475 476 6.156083 AGGAAGAAGGAACAGGAGAAGATAAG 59.844 42.308 0.00 0.00 0.00 1.73
476 477 5.948742 AGAAGGAACAGGAGAAGATAAGG 57.051 43.478 0.00 0.00 0.00 2.69
477 478 5.346270 AGAAGGAACAGGAGAAGATAAGGT 58.654 41.667 0.00 0.00 0.00 3.50
478 479 5.188751 AGAAGGAACAGGAGAAGATAAGGTG 59.811 44.000 0.00 0.00 0.00 4.00
479 480 3.777522 AGGAACAGGAGAAGATAAGGTGG 59.222 47.826 0.00 0.00 0.00 4.61
480 481 3.118223 GGAACAGGAGAAGATAAGGTGGG 60.118 52.174 0.00 0.00 0.00 4.61
481 482 3.207044 ACAGGAGAAGATAAGGTGGGT 57.793 47.619 0.00 0.00 0.00 4.51
482 483 3.108376 ACAGGAGAAGATAAGGTGGGTC 58.892 50.000 0.00 0.00 0.00 4.46
483 484 3.107601 CAGGAGAAGATAAGGTGGGTCA 58.892 50.000 0.00 0.00 0.00 4.02
484 485 3.133721 CAGGAGAAGATAAGGTGGGTCAG 59.866 52.174 0.00 0.00 0.00 3.51
485 486 2.436173 GGAGAAGATAAGGTGGGTCAGG 59.564 54.545 0.00 0.00 0.00 3.86
486 487 2.436173 GAGAAGATAAGGTGGGTCAGGG 59.564 54.545 0.00 0.00 0.00 4.45
487 488 2.197465 GAAGATAAGGTGGGTCAGGGT 58.803 52.381 0.00 0.00 0.00 4.34
488 489 1.584724 AGATAAGGTGGGTCAGGGTG 58.415 55.000 0.00 0.00 0.00 4.61
489 490 1.080498 AGATAAGGTGGGTCAGGGTGA 59.920 52.381 0.00 0.00 0.00 4.02
490 491 2.127708 GATAAGGTGGGTCAGGGTGAT 58.872 52.381 0.00 0.00 0.00 3.06
491 492 1.285280 TAAGGTGGGTCAGGGTGATG 58.715 55.000 0.00 0.00 0.00 3.07
492 493 2.044946 GGTGGGTCAGGGTGATGC 60.045 66.667 0.00 0.00 0.00 3.91
493 494 2.756400 GTGGGTCAGGGTGATGCA 59.244 61.111 0.00 0.00 0.00 3.96
494 495 1.675641 GTGGGTCAGGGTGATGCAC 60.676 63.158 0.00 0.00 0.00 4.57
495 496 2.436646 GGGTCAGGGTGATGCACG 60.437 66.667 0.00 0.00 34.83 5.34
496 497 2.662596 GGTCAGGGTGATGCACGA 59.337 61.111 0.00 0.00 34.83 4.35
497 498 1.448540 GGTCAGGGTGATGCACGAG 60.449 63.158 0.00 0.00 34.83 4.18
498 499 1.448540 GTCAGGGTGATGCACGAGG 60.449 63.158 0.00 0.00 34.83 4.63
499 500 2.821366 CAGGGTGATGCACGAGGC 60.821 66.667 0.00 0.00 45.13 4.70
508 509 3.630204 GCACGAGGCGTATGATGG 58.370 61.111 0.00 0.00 38.32 3.51
509 510 1.956170 GCACGAGGCGTATGATGGG 60.956 63.158 0.00 0.00 38.32 4.00
510 511 1.300931 CACGAGGCGTATGATGGGG 60.301 63.158 0.00 0.00 38.32 4.96
511 512 1.456892 ACGAGGCGTATGATGGGGA 60.457 57.895 0.00 0.00 38.73 4.81
512 513 1.006102 CGAGGCGTATGATGGGGAC 60.006 63.158 0.00 0.00 0.00 4.46
513 514 1.464376 CGAGGCGTATGATGGGGACT 61.464 60.000 0.00 0.00 0.00 3.85
514 515 0.318762 GAGGCGTATGATGGGGACTC 59.681 60.000 0.00 0.00 0.00 3.36
515 516 0.398522 AGGCGTATGATGGGGACTCA 60.399 55.000 0.00 0.00 0.00 3.41
516 517 0.687354 GGCGTATGATGGGGACTCAT 59.313 55.000 0.00 0.00 37.18 2.90
517 518 1.338200 GGCGTATGATGGGGACTCATC 60.338 57.143 5.23 5.23 42.72 2.92
518 519 1.670087 GCGTATGATGGGGACTCATCG 60.670 57.143 7.60 0.00 44.68 3.84
519 520 1.670087 CGTATGATGGGGACTCATCGC 60.670 57.143 7.60 0.62 44.68 4.58
520 521 0.603065 TATGATGGGGACTCATCGCG 59.397 55.000 0.00 0.00 44.68 5.87
521 522 1.402896 ATGATGGGGACTCATCGCGT 61.403 55.000 5.77 0.00 44.68 6.01
522 523 1.592669 GATGGGGACTCATCGCGTG 60.593 63.158 5.77 3.96 38.67 5.34
523 524 2.978452 GATGGGGACTCATCGCGTGG 62.978 65.000 5.77 0.00 38.67 4.94
525 526 4.148825 GGGACTCATCGCGTGGCT 62.149 66.667 5.77 0.00 0.00 4.75
526 527 2.583593 GGACTCATCGCGTGGCTC 60.584 66.667 5.77 2.55 0.00 4.70
527 528 2.951745 GACTCATCGCGTGGCTCG 60.952 66.667 5.77 4.32 43.12 5.03
549 550 3.252484 CGACCGGCGGAATCGTTC 61.252 66.667 35.78 17.62 38.89 3.95
550 551 3.252484 GACCGGCGGAATCGTTCG 61.252 66.667 35.78 2.05 38.89 3.95
551 552 3.688475 GACCGGCGGAATCGTTCGA 62.688 63.158 35.78 0.00 37.36 3.71
552 553 3.252484 CCGGCGGAATCGTTCGAC 61.252 66.667 24.41 0.00 37.36 4.20
553 554 3.252484 CGGCGGAATCGTTCGACC 61.252 66.667 0.00 0.00 37.36 4.79
554 555 3.252484 GGCGGAATCGTTCGACCG 61.252 66.667 16.14 16.14 46.74 4.79
555 556 3.252484 GCGGAATCGTTCGACCGG 61.252 66.667 19.89 0.00 44.61 5.28
556 557 3.252484 CGGAATCGTTCGACCGGC 61.252 66.667 0.00 0.00 41.41 6.13
557 558 3.252484 GGAATCGTTCGACCGGCG 61.252 66.667 0.00 6.66 42.69 6.46
558 559 3.910104 GAATCGTTCGACCGGCGC 61.910 66.667 0.00 0.00 40.61 6.53
559 560 4.728102 AATCGTTCGACCGGCGCA 62.728 61.111 10.83 0.00 40.61 6.09
574 575 3.894947 GCACCACGCCCAAACGTT 61.895 61.111 0.00 0.00 45.75 3.99
575 576 2.802106 CACCACGCCCAAACGTTT 59.198 55.556 7.96 7.96 45.75 3.60
576 577 2.023318 CACCACGCCCAAACGTTTA 58.977 52.632 14.20 0.00 45.75 2.01
577 578 0.317186 CACCACGCCCAAACGTTTAC 60.317 55.000 14.20 5.55 45.75 2.01
578 579 0.747283 ACCACGCCCAAACGTTTACA 60.747 50.000 14.20 0.00 45.75 2.41
579 580 0.381089 CCACGCCCAAACGTTTACAA 59.619 50.000 14.20 0.00 45.75 2.41
580 581 1.202268 CCACGCCCAAACGTTTACAAA 60.202 47.619 14.20 0.00 45.75 2.83
581 582 2.527100 CACGCCCAAACGTTTACAAAA 58.473 42.857 14.20 0.00 45.75 2.44
582 583 2.921754 CACGCCCAAACGTTTACAAAAA 59.078 40.909 14.20 0.00 45.75 1.94
602 603 2.622064 AAAAAGTCTCTGTCCGCTGT 57.378 45.000 0.00 0.00 0.00 4.40
603 604 1.871080 AAAAGTCTCTGTCCGCTGTG 58.129 50.000 0.00 0.00 0.00 3.66
604 605 0.753262 AAAGTCTCTGTCCGCTGTGT 59.247 50.000 0.00 0.00 0.00 3.72
605 606 0.315568 AAGTCTCTGTCCGCTGTGTC 59.684 55.000 0.00 0.00 0.00 3.67
606 607 1.080434 GTCTCTGTCCGCTGTGTCC 60.080 63.158 0.00 0.00 0.00 4.02
607 608 2.262915 CTCTGTCCGCTGTGTCCC 59.737 66.667 0.00 0.00 0.00 4.46
608 609 2.203640 TCTGTCCGCTGTGTCCCT 60.204 61.111 0.00 0.00 0.00 4.20
609 610 2.047844 CTGTCCGCTGTGTCCCTG 60.048 66.667 0.00 0.00 0.00 4.45
610 611 4.314440 TGTCCGCTGTGTCCCTGC 62.314 66.667 0.00 0.00 34.88 4.85
614 615 4.988598 CGCTGTGTCCCTGCCGTT 62.989 66.667 0.00 0.00 34.75 4.44
615 616 3.357079 GCTGTGTCCCTGCCGTTG 61.357 66.667 0.00 0.00 32.24 4.10
616 617 3.357079 CTGTGTCCCTGCCGTTGC 61.357 66.667 0.00 0.00 38.26 4.17
617 618 4.947147 TGTGTCCCTGCCGTTGCC 62.947 66.667 0.00 0.00 36.33 4.52
624 625 2.511373 CTGCCGTTGCCGCATCTA 60.511 61.111 0.00 0.00 36.33 1.98
625 626 2.046796 TGCCGTTGCCGCATCTAA 60.047 55.556 0.00 0.00 36.33 2.10
626 627 2.309764 CTGCCGTTGCCGCATCTAAC 62.310 60.000 0.00 0.00 36.33 2.34
627 628 2.106683 GCCGTTGCCGCATCTAACT 61.107 57.895 0.00 0.00 0.00 2.24
628 629 1.715585 CCGTTGCCGCATCTAACTG 59.284 57.895 0.00 0.00 0.00 3.16
629 630 1.705337 CCGTTGCCGCATCTAACTGG 61.705 60.000 0.00 0.00 0.00 4.00
630 631 0.739462 CGTTGCCGCATCTAACTGGA 60.739 55.000 0.00 0.00 0.00 3.86
631 632 1.009829 GTTGCCGCATCTAACTGGAG 58.990 55.000 0.00 0.00 0.00 3.86
632 633 0.613260 TTGCCGCATCTAACTGGAGT 59.387 50.000 0.00 0.00 0.00 3.85
633 634 0.613260 TGCCGCATCTAACTGGAGTT 59.387 50.000 0.00 0.00 41.73 3.01
634 635 1.009829 GCCGCATCTAACTGGAGTTG 58.990 55.000 2.14 0.00 38.90 3.16
635 636 1.009829 CCGCATCTAACTGGAGTTGC 58.990 55.000 2.14 0.00 38.90 4.17
637 638 1.009829 GCATCTAACTGGAGTTGCGG 58.990 55.000 2.14 0.00 38.90 5.69
638 639 1.009829 CATCTAACTGGAGTTGCGGC 58.990 55.000 2.14 0.00 38.90 6.53
639 640 0.460284 ATCTAACTGGAGTTGCGGCG 60.460 55.000 0.51 0.51 38.90 6.46
640 641 2.047655 TAACTGGAGTTGCGGCGG 60.048 61.111 9.78 0.00 38.90 6.13
656 657 2.679996 GGCGGCCACTTCCCAATT 60.680 61.111 15.62 0.00 0.00 2.32
657 658 2.710902 GGCGGCCACTTCCCAATTC 61.711 63.158 15.62 0.00 0.00 2.17
658 659 2.710902 GCGGCCACTTCCCAATTCC 61.711 63.158 2.24 0.00 0.00 3.01
659 660 2.052104 CGGCCACTTCCCAATTCCC 61.052 63.158 2.24 0.00 0.00 3.97
660 661 1.078347 GGCCACTTCCCAATTCCCA 59.922 57.895 0.00 0.00 0.00 4.37
661 662 0.544120 GGCCACTTCCCAATTCCCAA 60.544 55.000 0.00 0.00 0.00 4.12
662 663 1.571955 GCCACTTCCCAATTCCCAAT 58.428 50.000 0.00 0.00 0.00 3.16
663 664 1.908619 GCCACTTCCCAATTCCCAATT 59.091 47.619 0.00 0.00 0.00 2.32
664 665 2.355007 GCCACTTCCCAATTCCCAATTG 60.355 50.000 0.00 0.00 46.09 2.32
665 666 2.905736 CCACTTCCCAATTCCCAATTGT 59.094 45.455 4.43 0.00 45.28 2.71
666 667 3.306919 CCACTTCCCAATTCCCAATTGTG 60.307 47.826 4.43 0.00 45.28 3.33
667 668 2.302733 ACTTCCCAATTCCCAATTGTGC 59.697 45.455 4.43 0.00 45.28 4.57
668 669 1.274712 TCCCAATTCCCAATTGTGCC 58.725 50.000 4.43 0.00 45.28 5.01
669 670 1.203288 TCCCAATTCCCAATTGTGCCT 60.203 47.619 4.43 0.00 45.28 4.75
670 671 1.629861 CCCAATTCCCAATTGTGCCTT 59.370 47.619 4.43 0.00 45.28 4.35
671 672 2.040145 CCCAATTCCCAATTGTGCCTTT 59.960 45.455 4.43 0.00 45.28 3.11
672 673 3.498301 CCCAATTCCCAATTGTGCCTTTT 60.498 43.478 4.43 0.00 45.28 2.27
673 674 4.143543 CCAATTCCCAATTGTGCCTTTTT 58.856 39.130 4.43 0.00 45.28 1.94
696 697 8.546597 TTTTTCCTTTTCTTTTTGAGTCCAAG 57.453 30.769 0.00 0.00 33.23 3.61
697 698 6.850752 TTCCTTTTCTTTTTGAGTCCAAGT 57.149 33.333 0.00 0.00 33.23 3.16
698 699 6.850752 TCCTTTTCTTTTTGAGTCCAAGTT 57.149 33.333 0.00 0.00 33.23 2.66
699 700 6.863275 TCCTTTTCTTTTTGAGTCCAAGTTC 58.137 36.000 0.00 0.00 33.23 3.01
700 701 6.042777 CCTTTTCTTTTTGAGTCCAAGTTCC 58.957 40.000 0.00 0.00 33.23 3.62
701 702 5.592104 TTTCTTTTTGAGTCCAAGTTCCC 57.408 39.130 0.00 0.00 33.23 3.97
702 703 4.243793 TCTTTTTGAGTCCAAGTTCCCA 57.756 40.909 0.00 0.00 33.23 4.37
703 704 3.951680 TCTTTTTGAGTCCAAGTTCCCAC 59.048 43.478 0.00 0.00 33.23 4.61
704 705 2.358322 TTTGAGTCCAAGTTCCCACC 57.642 50.000 0.00 0.00 33.23 4.61
705 706 1.518367 TTGAGTCCAAGTTCCCACCT 58.482 50.000 0.00 0.00 0.00 4.00
706 707 1.518367 TGAGTCCAAGTTCCCACCTT 58.482 50.000 0.00 0.00 0.00 3.50
707 708 1.850345 TGAGTCCAAGTTCCCACCTTT 59.150 47.619 0.00 0.00 0.00 3.11
708 709 2.243736 TGAGTCCAAGTTCCCACCTTTT 59.756 45.455 0.00 0.00 0.00 2.27
709 710 3.296854 GAGTCCAAGTTCCCACCTTTTT 58.703 45.455 0.00 0.00 0.00 1.94
729 730 4.806342 TTTTTGAGCGTAGTCCAAGTTC 57.194 40.909 0.00 0.00 0.00 3.01
730 731 2.450609 TTGAGCGTAGTCCAAGTTCC 57.549 50.000 0.00 0.00 0.00 3.62
731 732 0.606604 TGAGCGTAGTCCAAGTTCCC 59.393 55.000 0.00 0.00 0.00 3.97
732 733 0.606604 GAGCGTAGTCCAAGTTCCCA 59.393 55.000 0.00 0.00 0.00 4.37
733 734 0.320697 AGCGTAGTCCAAGTTCCCAC 59.679 55.000 0.00 0.00 0.00 4.61
734 735 0.320697 GCGTAGTCCAAGTTCCCACT 59.679 55.000 0.00 0.00 33.11 4.00
735 736 1.270678 GCGTAGTCCAAGTTCCCACTT 60.271 52.381 0.00 0.00 44.72 3.16
742 743 3.116091 AAGTTCCCACTTGTGCCTG 57.884 52.632 0.00 0.00 42.05 4.85
743 744 0.258774 AAGTTCCCACTTGTGCCTGT 59.741 50.000 0.00 0.00 42.05 4.00
744 745 0.466189 AGTTCCCACTTGTGCCTGTG 60.466 55.000 0.00 0.00 0.00 3.66
745 746 1.827789 TTCCCACTTGTGCCTGTGC 60.828 57.895 0.00 0.00 38.26 4.57
746 747 3.663176 CCCACTTGTGCCTGTGCG 61.663 66.667 0.00 0.00 41.78 5.34
747 748 3.663176 CCACTTGTGCCTGTGCGG 61.663 66.667 0.00 0.00 41.78 5.69
748 749 2.591429 CACTTGTGCCTGTGCGGA 60.591 61.111 0.00 0.00 41.78 5.54
749 750 1.968017 CACTTGTGCCTGTGCGGAT 60.968 57.895 0.00 0.00 41.78 4.18
750 751 1.968017 ACTTGTGCCTGTGCGGATG 60.968 57.895 0.00 0.00 41.78 3.51
751 752 2.672651 TTGTGCCTGTGCGGATGG 60.673 61.111 0.00 0.00 41.78 3.51
752 753 4.720902 TGTGCCTGTGCGGATGGG 62.721 66.667 1.64 0.00 41.78 4.00
753 754 4.722700 GTGCCTGTGCGGATGGGT 62.723 66.667 1.64 0.00 41.78 4.51
754 755 4.408821 TGCCTGTGCGGATGGGTC 62.409 66.667 1.64 0.00 41.78 4.46
756 757 4.082523 CCTGTGCGGATGGGTCGT 62.083 66.667 0.00 0.00 33.16 4.34
757 758 2.509336 CTGTGCGGATGGGTCGTC 60.509 66.667 0.00 0.00 0.00 4.20
758 759 2.994995 TGTGCGGATGGGTCGTCT 60.995 61.111 0.00 0.00 0.00 4.18
759 760 2.264794 GTGCGGATGGGTCGTCTT 59.735 61.111 0.00 0.00 0.00 3.01
760 761 1.375523 GTGCGGATGGGTCGTCTTT 60.376 57.895 0.00 0.00 0.00 2.52
761 762 0.953960 GTGCGGATGGGTCGTCTTTT 60.954 55.000 0.00 0.00 0.00 2.27
762 763 0.250553 TGCGGATGGGTCGTCTTTTT 60.251 50.000 0.00 0.00 0.00 1.94
813 814 1.481871 ATCTTGGCCCATCAAAGCAG 58.518 50.000 0.00 0.00 0.00 4.24
814 815 0.405198 TCTTGGCCCATCAAAGCAGA 59.595 50.000 0.00 0.00 0.00 4.26
815 816 0.815734 CTTGGCCCATCAAAGCAGAG 59.184 55.000 0.00 0.00 0.00 3.35
817 818 2.421399 GGCCCATCAAAGCAGAGGC 61.421 63.158 0.00 0.00 39.73 4.70
819 820 1.305623 CCCATCAAAGCAGAGGCCT 59.694 57.895 3.86 3.86 42.56 5.19
837 873 2.814183 CTACCAGCCCACGACACGAC 62.814 65.000 0.00 0.00 0.00 4.34
838 874 4.293648 CCAGCCCACGACACGACA 62.294 66.667 0.00 0.00 0.00 4.35
839 875 2.279851 CAGCCCACGACACGACAA 60.280 61.111 0.00 0.00 0.00 3.18
851 887 1.145377 ACGACAAGCTTCGGTTGGT 59.855 52.632 12.18 0.00 44.10 3.67
852 888 0.463116 ACGACAAGCTTCGGTTGGTT 60.463 50.000 12.18 0.00 44.10 3.67
853 889 0.041312 CGACAAGCTTCGGTTGGTTG 60.041 55.000 0.00 11.42 44.10 3.77
854 890 0.317854 GACAAGCTTCGGTTGGTTGC 60.318 55.000 0.00 0.00 44.10 4.17
855 891 1.007387 CAAGCTTCGGTTGGTTGCC 60.007 57.895 0.00 0.00 37.38 4.52
956 993 0.885150 GAAATCCGCCGAATCCTCCC 60.885 60.000 0.00 0.00 0.00 4.30
957 994 2.660258 AAATCCGCCGAATCCTCCCG 62.660 60.000 0.00 0.00 0.00 5.14
958 995 4.826404 TCCGCCGAATCCTCCCGA 62.826 66.667 0.00 0.00 0.00 5.14
959 996 4.286320 CCGCCGAATCCTCCCGAG 62.286 72.222 0.00 0.00 0.00 4.63
960 997 4.951963 CGCCGAATCCTCCCGAGC 62.952 72.222 0.00 0.00 0.00 5.03
961 998 4.610714 GCCGAATCCTCCCGAGCC 62.611 72.222 0.00 0.00 0.00 4.70
962 999 3.930012 CCGAATCCTCCCGAGCCC 61.930 72.222 0.00 0.00 0.00 5.19
963 1000 3.930012 CGAATCCTCCCGAGCCCC 61.930 72.222 0.00 0.00 0.00 5.80
1118 1156 3.127352 GATCCGCTCCTCGCTTCGT 62.127 63.158 0.00 0.00 36.73 3.85
1142 1180 0.534412 CAGCTTCTGATGTCCGAGGT 59.466 55.000 0.00 0.00 32.44 3.85
1195 1233 2.688666 ATCCGGCAGAAGAGGGCA 60.689 61.111 0.00 0.00 0.00 5.36
1274 1312 2.169561 GGTTGGTCCATCCTTCTCTCTC 59.830 54.545 11.29 0.00 37.07 3.20
1275 1313 3.103742 GTTGGTCCATCCTTCTCTCTCT 58.896 50.000 0.00 0.00 37.07 3.10
1276 1314 3.025322 TGGTCCATCCTTCTCTCTCTC 57.975 52.381 0.00 0.00 37.07 3.20
1318 1356 6.699575 TCCTTTGCTATCTTTGCTTAATCC 57.300 37.500 0.00 0.00 0.00 3.01
1319 1357 5.296780 TCCTTTGCTATCTTTGCTTAATCCG 59.703 40.000 0.00 0.00 0.00 4.18
1320 1358 4.552166 TTGCTATCTTTGCTTAATCCGC 57.448 40.909 0.00 0.00 0.00 5.54
1321 1359 3.808728 TGCTATCTTTGCTTAATCCGCT 58.191 40.909 0.00 0.00 0.00 5.52
1322 1360 4.199310 TGCTATCTTTGCTTAATCCGCTT 58.801 39.130 0.00 0.00 0.00 4.68
1323 1361 4.273480 TGCTATCTTTGCTTAATCCGCTTC 59.727 41.667 0.00 0.00 0.00 3.86
1324 1362 4.513318 GCTATCTTTGCTTAATCCGCTTCT 59.487 41.667 0.00 0.00 0.00 2.85
1325 1363 5.333721 GCTATCTTTGCTTAATCCGCTTCTC 60.334 44.000 0.00 0.00 0.00 2.87
1326 1364 4.207891 TCTTTGCTTAATCCGCTTCTCT 57.792 40.909 0.00 0.00 0.00 3.10
1327 1365 4.579869 TCTTTGCTTAATCCGCTTCTCTT 58.420 39.130 0.00 0.00 0.00 2.85
1338 1386 2.271800 CGCTTCTCTTCGGTGCTAATT 58.728 47.619 0.00 0.00 0.00 1.40
1341 1389 3.935828 GCTTCTCTTCGGTGCTAATTCTT 59.064 43.478 0.00 0.00 0.00 2.52
1342 1390 4.393371 GCTTCTCTTCGGTGCTAATTCTTT 59.607 41.667 0.00 0.00 0.00 2.52
1454 1502 2.556189 ACATGTTTGCTACGCCATTTGA 59.444 40.909 0.00 0.00 0.00 2.69
1469 1517 0.896923 TTTGACTGCATTGGGGCATC 59.103 50.000 0.00 0.00 43.97 3.91
1472 1520 1.001020 ACTGCATTGGGGCATCGAA 60.001 52.632 0.00 0.00 43.97 3.71
1513 1561 3.857010 GCAAATGTGTAGCAACCCTGTTC 60.857 47.826 0.00 0.00 0.00 3.18
1700 1748 1.411246 AGCAAGTCCTAACACACACGA 59.589 47.619 0.00 0.00 0.00 4.35
1703 1751 2.503920 AGTCCTAACACACACGACAC 57.496 50.000 0.00 0.00 0.00 3.67
1765 1814 4.006989 CCTGGTTAACCGATTGAATGACA 58.993 43.478 19.65 0.00 39.43 3.58
1837 1886 2.674852 AGTGCATCTCAGTTTACATGCG 59.325 45.455 0.00 0.00 43.88 4.73
1942 1991 1.343142 TGGAGAAAGACGCTGCAGTTA 59.657 47.619 16.64 0.00 0.00 2.24
1957 2006 5.531122 TGCAGTTATCGCTAAGGTATTCT 57.469 39.130 0.00 0.00 0.00 2.40
2060 2109 0.599728 GGAGGATGCTCTAGCGCAAG 60.600 60.000 12.08 4.98 44.06 4.01
2140 2189 4.574599 AAAGTTTGTGCCTTCTTAGCAG 57.425 40.909 0.00 0.00 41.87 4.24
2315 2364 8.167392 TGGAAAAGGAGATACAGGATTTACAAA 58.833 33.333 0.00 0.00 0.00 2.83
2375 2424 2.744202 CGCTGTACTTGCTTCCATTCTT 59.256 45.455 9.12 0.00 0.00 2.52
2391 2440 8.792830 TTCCATTCTTGTTTGGTCTATCTAAG 57.207 34.615 0.00 0.00 34.48 2.18
2406 2455 8.596380 GGTCTATCTAAGAAAACTTTGACATCG 58.404 37.037 0.00 0.00 35.47 3.84
2600 2650 7.873719 TTAACAAAGAAATCTTCAGGTGTGA 57.126 32.000 0.00 0.00 34.61 3.58
2623 2681 9.233232 GTGAATGAAAATTATTTCGTGGGTATC 57.767 33.333 0.00 0.00 46.47 2.24
2680 2738 8.407457 TCTAAGCAAACATGTAACTCTATTCG 57.593 34.615 0.00 0.00 0.00 3.34
2733 2791 5.708948 TGCTTTATGGTTTTGTAGTCATGC 58.291 37.500 0.00 0.00 0.00 4.06
3147 3241 9.301897 AGAATAGTCTCATGCACATGTAGTATA 57.698 33.333 10.27 5.51 39.72 1.47
3205 3299 8.097038 AGCTCTTAAAACAATCTGTACTGATCA 58.903 33.333 14.79 0.00 0.00 2.92
3320 3414 1.202976 AGCTGCTGATGGAGGTGTTTT 60.203 47.619 0.00 0.00 40.75 2.43
3453 3547 3.706594 AGGAGAACTCAGTCTTGTCAACA 59.293 43.478 4.23 0.00 0.00 3.33
3832 3926 8.141268 CCAACTTGTGGTCAAATACAGTTAATT 58.859 33.333 0.00 0.00 43.20 1.40
3991 4085 2.061773 CTGACACGCTTGTAAGTCTGG 58.938 52.381 0.00 0.00 35.47 3.86
4013 4107 9.983024 TCTGGTACCATTTTCTTATATTTTCCA 57.017 29.630 16.75 0.00 0.00 3.53
4175 4269 2.426522 GTATGAGTGCAAACCTCAGCA 58.573 47.619 10.79 0.14 41.91 4.41
4207 4301 1.959985 TGCACCACAAATTGATCGGTT 59.040 42.857 0.00 0.00 0.00 4.44
4209 4303 3.181471 TGCACCACAAATTGATCGGTTTT 60.181 39.130 0.00 0.00 0.00 2.43
4210 4304 3.807071 GCACCACAAATTGATCGGTTTTT 59.193 39.130 0.00 0.00 0.00 1.94
4292 4386 5.948588 TCAACATTATTGTACATGTGTGGC 58.051 37.500 9.11 0.00 34.06 5.01
4308 4402 5.495640 TGTGTGGCACTGATGTATTTATCA 58.504 37.500 19.83 0.00 35.11 2.15
4316 4410 7.482743 GGCACTGATGTATTTATCATTTATGCG 59.517 37.037 0.00 0.00 36.55 4.73
4335 4429 4.728534 TGCGGATGTATTTTGTAAACTGC 58.271 39.130 0.00 0.00 0.00 4.40
4357 4451 5.990996 TGCCTGAAATGATGAAAGGAAAAAC 59.009 36.000 0.00 0.00 0.00 2.43
4491 4585 7.654116 TGCCTAACTTTGCACCTTAAAATAAAC 59.346 33.333 0.00 0.00 31.31 2.01
4634 4731 2.567615 AGGATACCGCTACCATTGATCC 59.432 50.000 0.00 0.00 33.06 3.36
4657 4754 5.641209 CCTATACAACTTAGCCATCTCATGC 59.359 44.000 0.00 0.00 0.00 4.06
4681 4778 4.355437 CAACTCTGTTGCTATCTCTACCG 58.645 47.826 0.00 0.00 0.00 4.02
4871 4975 0.716108 CGCTTAGAGCAACTCCAACG 59.284 55.000 0.50 0.00 42.58 4.10
4872 4976 1.797025 GCTTAGAGCAACTCCAACGT 58.203 50.000 0.00 0.00 41.89 3.99
4885 4989 2.124653 AACGTGCCGACCCAAACA 60.125 55.556 0.00 0.00 0.00 2.83
4890 4994 3.047877 GCCGACCCAAACAGACGG 61.048 66.667 0.00 0.00 45.26 4.79
4909 5013 1.731093 CGCTTTTGTCCGTTTGGGT 59.269 52.632 0.00 0.00 37.00 4.51
4914 5018 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
4915 5019 4.629523 GTCCGTTTGGGTCGGCCA 62.630 66.667 9.07 0.00 46.49 5.36
4916 5020 4.629523 TCCGTTTGGGTCGGCCAC 62.630 66.667 9.07 0.00 46.49 5.01
4948 5052 1.533625 CGCCCTGTTTGAGATTTGGA 58.466 50.000 0.00 0.00 0.00 3.53
5018 5122 1.542328 GGCCGCCCTTTTTCAACAAAT 60.542 47.619 0.00 0.00 0.00 2.32
5020 5124 2.993220 GCCGCCCTTTTTCAACAAATAG 59.007 45.455 0.00 0.00 0.00 1.73
5021 5125 2.993220 CCGCCCTTTTTCAACAAATAGC 59.007 45.455 0.00 0.00 0.00 2.97
5022 5126 3.553922 CCGCCCTTTTTCAACAAATAGCA 60.554 43.478 0.00 0.00 0.00 3.49
5023 5127 3.428534 CGCCCTTTTTCAACAAATAGCAC 59.571 43.478 0.00 0.00 0.00 4.40
5036 5144 7.856398 TCAACAAATAGCACAAATTTTGCATTG 59.144 29.630 20.12 20.36 42.83 2.82
5087 5195 8.065473 TCACAAGCAAACATATATTCCACAAT 57.935 30.769 0.00 0.00 0.00 2.71
5123 5231 8.748412 AGCATAGTTTCAACCAAATAAATAGCA 58.252 29.630 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.702348 GGATGTAGCAATTTTAATCACTGGTTC 59.298 37.037 0.00 0.00 0.00 3.62
26 27 1.820906 CGCACCCCCACTCATCATG 60.821 63.158 0.00 0.00 0.00 3.07
27 28 1.995066 TCGCACCCCCACTCATCAT 60.995 57.895 0.00 0.00 0.00 2.45
56 57 4.201970 TGTTACAGCTTTTTCCTTTGGTCG 60.202 41.667 0.00 0.00 0.00 4.79
74 75 9.085250 GTTGTAGCTTTCCTAGAATACTGTTAC 57.915 37.037 0.00 0.00 32.63 2.50
77 78 6.331061 CGTTGTAGCTTTCCTAGAATACTGT 58.669 40.000 0.00 0.00 32.63 3.55
124 125 3.304190 CCCGTAGTAGCAAAACAAACCAC 60.304 47.826 0.00 0.00 0.00 4.16
126 127 2.351060 GCCCGTAGTAGCAAAACAAACC 60.351 50.000 0.00 0.00 0.00 3.27
132 133 0.390209 GGTCGCCCGTAGTAGCAAAA 60.390 55.000 0.00 0.00 0.00 2.44
166 167 1.345741 CCATGTCATCCCGCTATCACT 59.654 52.381 0.00 0.00 0.00 3.41
171 172 2.828868 GGCCATGTCATCCCGCTA 59.171 61.111 0.00 0.00 0.00 4.26
172 173 4.552365 CGGCCATGTCATCCCGCT 62.552 66.667 2.24 0.00 33.77 5.52
179 180 4.094646 ATGTCGGCGGCCATGTCA 62.095 61.111 20.71 11.81 0.00 3.58
205 206 2.677875 CTCCCCTTGCCTGGTTGC 60.678 66.667 0.00 0.00 0.00 4.17
207 208 2.860971 AGCTCCCCTTGCCTGGTT 60.861 61.111 0.00 0.00 0.00 3.67
260 261 0.957888 GGTGAGCCTGAGTTGGAAGC 60.958 60.000 0.00 0.00 0.00 3.86
287 288 2.747855 CCCGGCTGCAAGTTCCTC 60.748 66.667 0.50 0.00 35.30 3.71
288 289 4.351054 CCCCGGCTGCAAGTTCCT 62.351 66.667 0.50 0.00 35.30 3.36
330 331 2.028020 GGTCACTACCTCCAACCTCAAG 60.028 54.545 0.00 0.00 43.08 3.02
331 332 1.975680 GGTCACTACCTCCAACCTCAA 59.024 52.381 0.00 0.00 43.08 3.02
332 333 1.640917 GGTCACTACCTCCAACCTCA 58.359 55.000 0.00 0.00 43.08 3.86
343 344 0.249398 AATCCCGTGCAGGTCACTAC 59.751 55.000 5.57 0.00 43.46 2.73
344 345 0.249120 CAATCCCGTGCAGGTCACTA 59.751 55.000 5.57 0.00 43.46 2.74
345 346 1.003355 CAATCCCGTGCAGGTCACT 60.003 57.895 5.57 0.00 43.46 3.41
346 347 2.040544 CCAATCCCGTGCAGGTCAC 61.041 63.158 5.57 0.00 42.23 3.67
347 348 2.350895 CCAATCCCGTGCAGGTCA 59.649 61.111 5.57 0.00 38.74 4.02
348 349 2.438434 CCCAATCCCGTGCAGGTC 60.438 66.667 5.57 0.00 38.74 3.85
349 350 4.047125 CCCCAATCCCGTGCAGGT 62.047 66.667 5.57 0.00 38.74 4.00
351 352 2.947938 CTAGCCCCAATCCCGTGCAG 62.948 65.000 0.00 0.00 0.00 4.41
352 353 3.012119 TAGCCCCAATCCCGTGCA 61.012 61.111 0.00 0.00 0.00 4.57
353 354 2.203209 CTAGCCCCAATCCCGTGC 60.203 66.667 0.00 0.00 0.00 5.34
354 355 1.146263 GACTAGCCCCAATCCCGTG 59.854 63.158 0.00 0.00 0.00 4.94
355 356 2.432300 CGACTAGCCCCAATCCCGT 61.432 63.158 0.00 0.00 0.00 5.28
356 357 2.421739 CGACTAGCCCCAATCCCG 59.578 66.667 0.00 0.00 0.00 5.14
357 358 2.829592 CCGACTAGCCCCAATCCC 59.170 66.667 0.00 0.00 0.00 3.85
358 359 2.111251 GCCGACTAGCCCCAATCC 59.889 66.667 0.00 0.00 0.00 3.01
359 360 2.280186 CGCCGACTAGCCCCAATC 60.280 66.667 0.00 0.00 0.00 2.67
360 361 2.666098 AACGCCGACTAGCCCCAAT 61.666 57.895 0.00 0.00 0.00 3.16
361 362 3.315949 AACGCCGACTAGCCCCAA 61.316 61.111 0.00 0.00 0.00 4.12
362 363 4.077184 CAACGCCGACTAGCCCCA 62.077 66.667 0.00 0.00 0.00 4.96
363 364 4.832608 CCAACGCCGACTAGCCCC 62.833 72.222 0.00 0.00 0.00 5.80
364 365 4.832608 CCCAACGCCGACTAGCCC 62.833 72.222 0.00 0.00 0.00 5.19
365 366 2.973180 GATCCCAACGCCGACTAGCC 62.973 65.000 0.00 0.00 0.00 3.93
366 367 1.591863 GATCCCAACGCCGACTAGC 60.592 63.158 0.00 0.00 0.00 3.42
367 368 1.067582 GGATCCCAACGCCGACTAG 59.932 63.158 0.00 0.00 0.00 2.57
368 369 3.213264 GGATCCCAACGCCGACTA 58.787 61.111 0.00 0.00 0.00 2.59
372 373 2.890474 CTTCGGATCCCAACGCCG 60.890 66.667 6.06 0.00 46.08 6.46
373 374 2.513897 CCTTCGGATCCCAACGCC 60.514 66.667 6.06 0.00 0.00 5.68
374 375 1.521681 CTCCTTCGGATCCCAACGC 60.522 63.158 6.06 0.00 0.00 4.84
375 376 1.144057 CCTCCTTCGGATCCCAACG 59.856 63.158 6.06 0.00 0.00 4.10
376 377 0.909623 TTCCTCCTTCGGATCCCAAC 59.090 55.000 6.06 0.00 32.02 3.77
377 378 1.204146 CTTCCTCCTTCGGATCCCAA 58.796 55.000 6.06 0.00 32.02 4.12
378 379 0.338467 TCTTCCTCCTTCGGATCCCA 59.662 55.000 6.06 0.00 32.02 4.37
379 380 1.346068 CATCTTCCTCCTTCGGATCCC 59.654 57.143 6.06 0.00 32.02 3.85
380 381 2.298729 CTCATCTTCCTCCTTCGGATCC 59.701 54.545 0.00 0.00 32.02 3.36
381 382 2.298729 CCTCATCTTCCTCCTTCGGATC 59.701 54.545 0.00 0.00 32.02 3.36
382 383 2.091055 TCCTCATCTTCCTCCTTCGGAT 60.091 50.000 0.00 0.00 32.02 4.18
383 384 1.288037 TCCTCATCTTCCTCCTTCGGA 59.712 52.381 0.00 0.00 0.00 4.55
384 385 1.686052 CTCCTCATCTTCCTCCTTCGG 59.314 57.143 0.00 0.00 0.00 4.30
385 386 1.068434 GCTCCTCATCTTCCTCCTTCG 59.932 57.143 0.00 0.00 0.00 3.79
386 387 1.068434 CGCTCCTCATCTTCCTCCTTC 59.932 57.143 0.00 0.00 0.00 3.46
387 388 1.118838 CGCTCCTCATCTTCCTCCTT 58.881 55.000 0.00 0.00 0.00 3.36
388 389 0.032615 ACGCTCCTCATCTTCCTCCT 60.033 55.000 0.00 0.00 0.00 3.69
389 390 0.103937 CACGCTCCTCATCTTCCTCC 59.896 60.000 0.00 0.00 0.00 4.30
390 391 0.103937 CCACGCTCCTCATCTTCCTC 59.896 60.000 0.00 0.00 0.00 3.71
391 392 1.965754 GCCACGCTCCTCATCTTCCT 61.966 60.000 0.00 0.00 0.00 3.36
392 393 1.522580 GCCACGCTCCTCATCTTCC 60.523 63.158 0.00 0.00 0.00 3.46
393 394 1.522580 GGCCACGCTCCTCATCTTC 60.523 63.158 0.00 0.00 0.00 2.87
394 395 2.293318 TGGCCACGCTCCTCATCTT 61.293 57.895 0.00 0.00 0.00 2.40
395 396 2.685017 TGGCCACGCTCCTCATCT 60.685 61.111 0.00 0.00 0.00 2.90
396 397 2.512515 GTGGCCACGCTCCTCATC 60.513 66.667 22.49 0.00 0.00 2.92
397 398 4.101448 GGTGGCCACGCTCCTCAT 62.101 66.667 29.08 0.00 0.00 2.90
399 400 4.767255 CTGGTGGCCACGCTCCTC 62.767 72.222 29.08 14.79 0.00 3.71
415 416 1.861542 CTATCTCAGCCTAGCGCGCT 61.862 60.000 38.01 38.01 44.76 5.92
416 417 1.443533 CTATCTCAGCCTAGCGCGC 60.444 63.158 26.66 26.66 44.76 6.86
417 418 0.593618 TTCTATCTCAGCCTAGCGCG 59.406 55.000 0.00 0.00 44.76 6.86
418 419 1.067915 CCTTCTATCTCAGCCTAGCGC 60.068 57.143 0.00 0.00 37.98 5.92
419 420 2.487762 CTCCTTCTATCTCAGCCTAGCG 59.512 54.545 0.00 0.00 0.00 4.26
420 421 2.825532 CCTCCTTCTATCTCAGCCTAGC 59.174 54.545 0.00 0.00 0.00 3.42
421 422 3.430453 CCCTCCTTCTATCTCAGCCTAG 58.570 54.545 0.00 0.00 0.00 3.02
422 423 2.110899 CCCCTCCTTCTATCTCAGCCTA 59.889 54.545 0.00 0.00 0.00 3.93
423 424 1.132881 CCCCTCCTTCTATCTCAGCCT 60.133 57.143 0.00 0.00 0.00 4.58
424 425 1.133009 TCCCCTCCTTCTATCTCAGCC 60.133 57.143 0.00 0.00 0.00 4.85
425 426 1.967779 GTCCCCTCCTTCTATCTCAGC 59.032 57.143 0.00 0.00 0.00 4.26
426 427 2.604139 GGTCCCCTCCTTCTATCTCAG 58.396 57.143 0.00 0.00 0.00 3.35
427 428 1.133450 CGGTCCCCTCCTTCTATCTCA 60.133 57.143 0.00 0.00 0.00 3.27
428 429 1.623163 CGGTCCCCTCCTTCTATCTC 58.377 60.000 0.00 0.00 0.00 2.75
429 430 0.188834 CCGGTCCCCTCCTTCTATCT 59.811 60.000 0.00 0.00 0.00 1.98
430 431 0.832559 CCCGGTCCCCTCCTTCTATC 60.833 65.000 0.00 0.00 0.00 2.08
431 432 1.236282 CCCGGTCCCCTCCTTCTAT 59.764 63.158 0.00 0.00 0.00 1.98
432 433 1.937528 TCCCGGTCCCCTCCTTCTA 60.938 63.158 0.00 0.00 0.00 2.10
433 434 3.281787 TCCCGGTCCCCTCCTTCT 61.282 66.667 0.00 0.00 0.00 2.85
434 435 2.764547 CTCCCGGTCCCCTCCTTC 60.765 72.222 0.00 0.00 0.00 3.46
435 436 4.416601 CCTCCCGGTCCCCTCCTT 62.417 72.222 0.00 0.00 0.00 3.36
437 438 4.410033 TTCCTCCCGGTCCCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
438 439 2.764547 CTTCCTCCCGGTCCCCTC 60.765 72.222 0.00 0.00 0.00 4.30
439 440 2.824388 CTTCTTCCTCCCGGTCCCCT 62.824 65.000 0.00 0.00 0.00 4.79
440 441 2.285144 TTCTTCCTCCCGGTCCCC 60.285 66.667 0.00 0.00 0.00 4.81
441 442 2.368011 CCTTCTTCCTCCCGGTCCC 61.368 68.421 0.00 0.00 0.00 4.46
442 443 0.908180 TTCCTTCTTCCTCCCGGTCC 60.908 60.000 0.00 0.00 0.00 4.46
443 444 0.249676 GTTCCTTCTTCCTCCCGGTC 59.750 60.000 0.00 0.00 0.00 4.79
444 445 0.473117 TGTTCCTTCTTCCTCCCGGT 60.473 55.000 0.00 0.00 0.00 5.28
445 446 0.250513 CTGTTCCTTCTTCCTCCCGG 59.749 60.000 0.00 0.00 0.00 5.73
446 447 0.250513 CCTGTTCCTTCTTCCTCCCG 59.749 60.000 0.00 0.00 0.00 5.14
447 448 1.557371 CTCCTGTTCCTTCTTCCTCCC 59.443 57.143 0.00 0.00 0.00 4.30
448 449 2.541466 TCTCCTGTTCCTTCTTCCTCC 58.459 52.381 0.00 0.00 0.00 4.30
449 450 3.835395 TCTTCTCCTGTTCCTTCTTCCTC 59.165 47.826 0.00 0.00 0.00 3.71
450 451 3.863086 TCTTCTCCTGTTCCTTCTTCCT 58.137 45.455 0.00 0.00 0.00 3.36
451 452 4.835284 ATCTTCTCCTGTTCCTTCTTCC 57.165 45.455 0.00 0.00 0.00 3.46
452 453 6.070481 ACCTTATCTTCTCCTGTTCCTTCTTC 60.070 42.308 0.00 0.00 0.00 2.87
453 454 5.788014 ACCTTATCTTCTCCTGTTCCTTCTT 59.212 40.000 0.00 0.00 0.00 2.52
454 455 5.188751 CACCTTATCTTCTCCTGTTCCTTCT 59.811 44.000 0.00 0.00 0.00 2.85
455 456 5.423886 CACCTTATCTTCTCCTGTTCCTTC 58.576 45.833 0.00 0.00 0.00 3.46
456 457 4.226168 CCACCTTATCTTCTCCTGTTCCTT 59.774 45.833 0.00 0.00 0.00 3.36
457 458 3.777522 CCACCTTATCTTCTCCTGTTCCT 59.222 47.826 0.00 0.00 0.00 3.36
458 459 3.118223 CCCACCTTATCTTCTCCTGTTCC 60.118 52.174 0.00 0.00 0.00 3.62
459 460 3.519913 ACCCACCTTATCTTCTCCTGTTC 59.480 47.826 0.00 0.00 0.00 3.18
460 461 3.519913 GACCCACCTTATCTTCTCCTGTT 59.480 47.826 0.00 0.00 0.00 3.16
461 462 3.108376 GACCCACCTTATCTTCTCCTGT 58.892 50.000 0.00 0.00 0.00 4.00
462 463 3.107601 TGACCCACCTTATCTTCTCCTG 58.892 50.000 0.00 0.00 0.00 3.86
463 464 3.379452 CTGACCCACCTTATCTTCTCCT 58.621 50.000 0.00 0.00 0.00 3.69
464 465 2.436173 CCTGACCCACCTTATCTTCTCC 59.564 54.545 0.00 0.00 0.00 3.71
465 466 2.436173 CCCTGACCCACCTTATCTTCTC 59.564 54.545 0.00 0.00 0.00 2.87
466 467 2.225908 ACCCTGACCCACCTTATCTTCT 60.226 50.000 0.00 0.00 0.00 2.85
467 468 2.092914 CACCCTGACCCACCTTATCTTC 60.093 54.545 0.00 0.00 0.00 2.87
468 469 1.916181 CACCCTGACCCACCTTATCTT 59.084 52.381 0.00 0.00 0.00 2.40
469 470 1.080498 TCACCCTGACCCACCTTATCT 59.920 52.381 0.00 0.00 0.00 1.98
470 471 1.580059 TCACCCTGACCCACCTTATC 58.420 55.000 0.00 0.00 0.00 1.75
471 472 1.846439 CATCACCCTGACCCACCTTAT 59.154 52.381 0.00 0.00 0.00 1.73
472 473 1.285280 CATCACCCTGACCCACCTTA 58.715 55.000 0.00 0.00 0.00 2.69
473 474 2.078452 CATCACCCTGACCCACCTT 58.922 57.895 0.00 0.00 0.00 3.50
474 475 2.606587 GCATCACCCTGACCCACCT 61.607 63.158 0.00 0.00 0.00 4.00
475 476 2.044946 GCATCACCCTGACCCACC 60.045 66.667 0.00 0.00 0.00 4.61
476 477 1.675641 GTGCATCACCCTGACCCAC 60.676 63.158 0.00 0.00 0.00 4.61
477 478 2.756400 GTGCATCACCCTGACCCA 59.244 61.111 0.00 0.00 0.00 4.51
478 479 2.436646 CGTGCATCACCCTGACCC 60.437 66.667 0.00 0.00 0.00 4.46
479 480 1.448540 CTCGTGCATCACCCTGACC 60.449 63.158 0.00 0.00 0.00 4.02
480 481 1.448540 CCTCGTGCATCACCCTGAC 60.449 63.158 0.00 0.00 0.00 3.51
481 482 2.981302 CCTCGTGCATCACCCTGA 59.019 61.111 0.00 0.00 0.00 3.86
482 483 2.821366 GCCTCGTGCATCACCCTG 60.821 66.667 0.00 0.00 40.77 4.45
483 484 4.457496 CGCCTCGTGCATCACCCT 62.457 66.667 0.00 0.00 41.33 4.34
484 485 2.644555 ATACGCCTCGTGCATCACCC 62.645 60.000 1.77 0.00 41.39 4.61
485 486 1.227263 ATACGCCTCGTGCATCACC 60.227 57.895 1.77 0.00 41.39 4.02
486 487 0.527600 TCATACGCCTCGTGCATCAC 60.528 55.000 1.77 0.00 41.39 3.06
487 488 0.389025 ATCATACGCCTCGTGCATCA 59.611 50.000 1.77 0.00 41.39 3.07
488 489 0.786581 CATCATACGCCTCGTGCATC 59.213 55.000 1.77 0.00 41.39 3.91
489 490 0.601046 CCATCATACGCCTCGTGCAT 60.601 55.000 1.77 0.00 41.39 3.96
490 491 1.227234 CCATCATACGCCTCGTGCA 60.227 57.895 1.77 0.00 41.39 4.57
491 492 1.956170 CCCATCATACGCCTCGTGC 60.956 63.158 1.77 0.00 41.39 5.34
492 493 1.300931 CCCCATCATACGCCTCGTG 60.301 63.158 1.77 0.00 41.39 4.35
493 494 1.456892 TCCCCATCATACGCCTCGT 60.457 57.895 0.00 0.00 44.35 4.18
494 495 1.006102 GTCCCCATCATACGCCTCG 60.006 63.158 0.00 0.00 0.00 4.63
495 496 0.318762 GAGTCCCCATCATACGCCTC 59.681 60.000 0.00 0.00 0.00 4.70
496 497 0.398522 TGAGTCCCCATCATACGCCT 60.399 55.000 0.00 0.00 0.00 5.52
497 498 0.687354 ATGAGTCCCCATCATACGCC 59.313 55.000 0.00 0.00 35.64 5.68
498 499 1.670087 CGATGAGTCCCCATCATACGC 60.670 57.143 0.00 0.00 42.21 4.42
499 500 1.670087 GCGATGAGTCCCCATCATACG 60.670 57.143 0.00 0.00 42.21 3.06
500 501 1.670087 CGCGATGAGTCCCCATCATAC 60.670 57.143 0.00 0.00 42.21 2.39
501 502 0.603065 CGCGATGAGTCCCCATCATA 59.397 55.000 0.00 0.00 42.21 2.15
502 503 1.368950 CGCGATGAGTCCCCATCAT 59.631 57.895 0.00 0.00 42.21 2.45
503 504 2.058001 ACGCGATGAGTCCCCATCA 61.058 57.895 15.93 0.00 42.21 3.07
504 505 1.592669 CACGCGATGAGTCCCCATC 60.593 63.158 15.93 0.00 39.52 3.51
505 506 2.501128 CACGCGATGAGTCCCCAT 59.499 61.111 15.93 0.00 0.00 4.00
506 507 3.770040 CCACGCGATGAGTCCCCA 61.770 66.667 15.93 0.00 0.00 4.96
508 509 4.148825 AGCCACGCGATGAGTCCC 62.149 66.667 15.93 0.00 0.00 4.46
509 510 2.583593 GAGCCACGCGATGAGTCC 60.584 66.667 15.93 0.00 0.00 3.85
510 511 2.951745 CGAGCCACGCGATGAGTC 60.952 66.667 15.93 6.64 34.51 3.36
532 533 3.252484 GAACGATTCCGCCGGTCG 61.252 66.667 13.77 13.77 39.95 4.79
533 534 3.252484 CGAACGATTCCGCCGGTC 61.252 66.667 1.63 0.00 40.08 4.79
534 535 3.751246 TCGAACGATTCCGCCGGT 61.751 61.111 1.63 0.00 39.95 5.28
535 536 3.252484 GTCGAACGATTCCGCCGG 61.252 66.667 0.00 0.00 39.95 6.13
536 537 3.252484 GGTCGAACGATTCCGCCG 61.252 66.667 0.00 0.00 39.95 6.46
537 538 3.252484 CGGTCGAACGATTCCGCC 61.252 66.667 20.37 0.00 39.95 6.13
538 539 3.252484 CCGGTCGAACGATTCCGC 61.252 66.667 27.26 0.00 41.38 5.54
539 540 3.252484 GCCGGTCGAACGATTCCG 61.252 66.667 27.26 14.00 42.22 4.30
540 541 3.252484 CGCCGGTCGAACGATTCC 61.252 66.667 27.26 8.54 41.67 3.01
541 542 3.910104 GCGCCGGTCGAACGATTC 61.910 66.667 27.26 11.94 41.67 2.52
542 543 4.728102 TGCGCCGGTCGAACGATT 62.728 61.111 27.26 0.00 41.67 3.34
557 558 2.061182 TAAACGTTTGGGCGTGGTGC 62.061 55.000 23.46 0.00 45.00 5.01
558 559 0.317186 GTAAACGTTTGGGCGTGGTG 60.317 55.000 23.46 0.00 45.00 4.17
559 560 0.747283 TGTAAACGTTTGGGCGTGGT 60.747 50.000 23.46 0.00 45.00 4.16
560 561 0.381089 TTGTAAACGTTTGGGCGTGG 59.619 50.000 23.46 0.00 45.00 4.94
561 562 2.190325 TTTGTAAACGTTTGGGCGTG 57.810 45.000 23.46 0.00 45.00 5.34
583 584 2.213499 CACAGCGGACAGAGACTTTTT 58.787 47.619 0.00 0.00 0.00 1.94
584 585 1.139058 ACACAGCGGACAGAGACTTTT 59.861 47.619 0.00 0.00 0.00 2.27
585 586 0.753262 ACACAGCGGACAGAGACTTT 59.247 50.000 0.00 0.00 0.00 2.66
586 587 0.315568 GACACAGCGGACAGAGACTT 59.684 55.000 0.00 0.00 0.00 3.01
587 588 1.528292 GGACACAGCGGACAGAGACT 61.528 60.000 0.00 0.00 0.00 3.24
588 589 1.080434 GGACACAGCGGACAGAGAC 60.080 63.158 0.00 0.00 0.00 3.36
589 590 2.276116 GGGACACAGCGGACAGAGA 61.276 63.158 0.00 0.00 0.00 3.10
590 591 2.262915 GGGACACAGCGGACAGAG 59.737 66.667 0.00 0.00 0.00 3.35
591 592 2.203640 AGGGACACAGCGGACAGA 60.204 61.111 0.00 0.00 0.00 3.41
592 593 2.047844 CAGGGACACAGCGGACAG 60.048 66.667 0.00 0.00 0.00 3.51
593 594 4.314440 GCAGGGACACAGCGGACA 62.314 66.667 0.00 0.00 0.00 4.02
597 598 4.988598 AACGGCAGGGACACAGCG 62.989 66.667 0.00 0.00 0.00 5.18
598 599 3.357079 CAACGGCAGGGACACAGC 61.357 66.667 0.00 0.00 0.00 4.40
599 600 3.357079 GCAACGGCAGGGACACAG 61.357 66.667 0.00 0.00 40.72 3.66
600 601 4.947147 GGCAACGGCAGGGACACA 62.947 66.667 0.00 0.00 43.71 3.72
612 613 1.009829 CTCCAGTTAGATGCGGCAAC 58.990 55.000 6.82 3.93 0.00 4.17
613 614 0.613260 ACTCCAGTTAGATGCGGCAA 59.387 50.000 6.82 0.00 0.00 4.52
614 615 0.613260 AACTCCAGTTAGATGCGGCA 59.387 50.000 4.58 4.58 36.32 5.69
615 616 1.009829 CAACTCCAGTTAGATGCGGC 58.990 55.000 0.00 0.00 36.32 6.53
616 617 1.009829 GCAACTCCAGTTAGATGCGG 58.990 55.000 0.00 0.00 35.87 5.69
618 619 1.009829 CCGCAACTCCAGTTAGATGC 58.990 55.000 0.00 0.00 40.70 3.91
619 620 1.009829 GCCGCAACTCCAGTTAGATG 58.990 55.000 0.00 0.00 36.32 2.90
620 621 0.460284 CGCCGCAACTCCAGTTAGAT 60.460 55.000 0.00 0.00 36.32 1.98
621 622 1.080093 CGCCGCAACTCCAGTTAGA 60.080 57.895 0.00 0.00 36.32 2.10
622 623 2.100631 CCGCCGCAACTCCAGTTAG 61.101 63.158 0.00 0.00 36.32 2.34
623 624 2.047655 CCGCCGCAACTCCAGTTA 60.048 61.111 0.00 0.00 36.32 2.24
639 640 2.679996 AATTGGGAAGTGGCCGCC 60.680 61.111 14.07 1.04 0.00 6.13
640 641 2.710902 GGAATTGGGAAGTGGCCGC 61.711 63.158 8.71 8.71 0.00 6.53
641 642 2.052104 GGGAATTGGGAAGTGGCCG 61.052 63.158 0.00 0.00 0.00 6.13
642 643 0.544120 TTGGGAATTGGGAAGTGGCC 60.544 55.000 0.00 0.00 0.00 5.36
643 644 1.571955 ATTGGGAATTGGGAAGTGGC 58.428 50.000 0.00 0.00 0.00 5.01
644 645 3.615224 CAATTGGGAATTGGGAAGTGG 57.385 47.619 0.00 0.00 43.50 4.00
671 672 8.154203 ACTTGGACTCAAAAAGAAAAGGAAAAA 58.846 29.630 0.00 0.00 31.77 1.94
672 673 7.676004 ACTTGGACTCAAAAAGAAAAGGAAAA 58.324 30.769 0.00 0.00 31.77 2.29
673 674 7.239763 ACTTGGACTCAAAAAGAAAAGGAAA 57.760 32.000 0.00 0.00 31.77 3.13
674 675 6.850752 ACTTGGACTCAAAAAGAAAAGGAA 57.149 33.333 0.00 0.00 31.77 3.36
675 676 6.127451 GGAACTTGGACTCAAAAAGAAAAGGA 60.127 38.462 0.00 0.00 31.77 3.36
676 677 6.042777 GGAACTTGGACTCAAAAAGAAAAGG 58.957 40.000 0.00 0.00 31.77 3.11
677 678 6.042777 GGGAACTTGGACTCAAAAAGAAAAG 58.957 40.000 0.00 0.00 31.77 2.27
678 679 5.482175 TGGGAACTTGGACTCAAAAAGAAAA 59.518 36.000 0.00 0.00 31.77 2.29
679 680 5.020132 TGGGAACTTGGACTCAAAAAGAAA 58.980 37.500 0.00 0.00 31.77 2.52
680 681 4.401202 GTGGGAACTTGGACTCAAAAAGAA 59.599 41.667 0.00 0.00 31.77 2.52
681 682 3.951680 GTGGGAACTTGGACTCAAAAAGA 59.048 43.478 0.00 0.00 31.77 2.52
682 683 3.068165 GGTGGGAACTTGGACTCAAAAAG 59.932 47.826 0.00 0.00 31.77 2.27
683 684 3.028130 GGTGGGAACTTGGACTCAAAAA 58.972 45.455 0.00 0.00 31.77 1.94
684 685 2.243736 AGGTGGGAACTTGGACTCAAAA 59.756 45.455 0.00 0.00 31.77 2.44
685 686 1.850345 AGGTGGGAACTTGGACTCAAA 59.150 47.619 0.00 0.00 31.77 2.69
686 687 1.518367 AGGTGGGAACTTGGACTCAA 58.482 50.000 0.00 0.00 0.00 3.02
687 688 1.518367 AAGGTGGGAACTTGGACTCA 58.482 50.000 0.00 0.00 0.00 3.41
688 689 2.658807 AAAGGTGGGAACTTGGACTC 57.341 50.000 0.00 0.00 0.00 3.36
689 690 3.398318 AAAAAGGTGGGAACTTGGACT 57.602 42.857 0.00 0.00 0.00 3.85
708 709 3.562557 GGAACTTGGACTACGCTCAAAAA 59.437 43.478 0.00 0.00 0.00 1.94
709 710 3.135994 GGAACTTGGACTACGCTCAAAA 58.864 45.455 0.00 0.00 0.00 2.44
710 711 2.549349 GGGAACTTGGACTACGCTCAAA 60.549 50.000 0.00 0.00 0.00 2.69
711 712 1.001633 GGGAACTTGGACTACGCTCAA 59.998 52.381 0.00 0.00 0.00 3.02
712 713 0.606604 GGGAACTTGGACTACGCTCA 59.393 55.000 0.00 0.00 0.00 4.26
713 714 0.606604 TGGGAACTTGGACTACGCTC 59.393 55.000 0.00 0.00 0.00 5.03
714 715 0.320697 GTGGGAACTTGGACTACGCT 59.679 55.000 0.00 0.00 0.00 5.07
715 716 0.320697 AGTGGGAACTTGGACTACGC 59.679 55.000 0.00 0.00 0.00 4.42
716 717 2.413837 CAAGTGGGAACTTGGACTACG 58.586 52.381 10.14 0.00 42.34 3.51
724 725 0.258774 ACAGGCACAAGTGGGAACTT 59.741 50.000 2.00 0.00 0.00 2.66
725 726 0.466189 CACAGGCACAAGTGGGAACT 60.466 55.000 2.00 0.00 33.93 3.01
726 727 2.032981 CACAGGCACAAGTGGGAAC 58.967 57.895 2.00 0.00 33.93 3.62
727 728 1.827789 GCACAGGCACAAGTGGGAA 60.828 57.895 2.00 0.00 40.72 3.97
728 729 2.203337 GCACAGGCACAAGTGGGA 60.203 61.111 2.00 0.00 40.72 4.37
729 730 3.663176 CGCACAGGCACAAGTGGG 61.663 66.667 2.00 0.00 41.21 4.61
730 731 3.663176 CCGCACAGGCACAAGTGG 61.663 66.667 2.00 0.00 41.24 4.00
731 732 1.968017 ATCCGCACAGGCACAAGTG 60.968 57.895 0.00 0.00 41.24 3.16
732 733 1.968017 CATCCGCACAGGCACAAGT 60.968 57.895 0.00 0.00 41.24 3.16
733 734 2.693762 CCATCCGCACAGGCACAAG 61.694 63.158 0.00 0.00 41.24 3.16
734 735 2.672651 CCATCCGCACAGGCACAA 60.673 61.111 0.00 0.00 41.24 3.33
735 736 4.720902 CCCATCCGCACAGGCACA 62.721 66.667 0.00 0.00 41.24 4.57
736 737 4.722700 ACCCATCCGCACAGGCAC 62.723 66.667 0.00 0.00 41.24 5.01
737 738 4.408821 GACCCATCCGCACAGGCA 62.409 66.667 0.00 0.00 41.24 4.75
739 740 4.082523 ACGACCCATCCGCACAGG 62.083 66.667 0.00 0.00 42.97 4.00
740 741 2.507110 AAGACGACCCATCCGCACAG 62.507 60.000 0.00 0.00 0.00 3.66
741 742 2.107041 AAAGACGACCCATCCGCACA 62.107 55.000 0.00 0.00 0.00 4.57
742 743 0.953960 AAAAGACGACCCATCCGCAC 60.954 55.000 0.00 0.00 0.00 5.34
743 744 0.250553 AAAAAGACGACCCATCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
744 745 2.551644 AAAAAGACGACCCATCCGC 58.448 52.632 0.00 0.00 0.00 5.54
773 774 1.344438 TGAGGCTACCGCATCCTTATG 59.656 52.381 0.00 0.00 45.83 1.90
774 775 1.717032 TGAGGCTACCGCATCCTTAT 58.283 50.000 0.00 0.00 45.83 1.73
775 776 1.491668 TTGAGGCTACCGCATCCTTA 58.508 50.000 0.00 0.00 45.83 2.69
781 782 0.107703 CCAAGATTGAGGCTACCGCA 60.108 55.000 0.00 0.00 38.10 5.69
817 818 2.264794 GTGTCGTGGGCTGGTAGG 59.735 66.667 0.00 0.00 0.00 3.18
819 820 2.598099 TCGTGTCGTGGGCTGGTA 60.598 61.111 0.00 0.00 0.00 3.25
837 873 1.007387 GGCAACCAACCGAAGCTTG 60.007 57.895 2.10 0.00 0.00 4.01
838 874 0.755327 AAGGCAACCAACCGAAGCTT 60.755 50.000 0.00 0.00 37.17 3.74
839 875 1.152756 AAGGCAACCAACCGAAGCT 60.153 52.632 0.00 0.00 37.17 3.74
851 887 2.664851 CACGACGAGGCAAGGCAA 60.665 61.111 0.00 0.00 0.00 4.52
852 888 3.858868 GACACGACGAGGCAAGGCA 62.859 63.158 0.00 0.00 0.00 4.75
853 889 3.112709 GACACGACGAGGCAAGGC 61.113 66.667 0.00 0.00 0.00 4.35
854 890 1.444553 GAGACACGACGAGGCAAGG 60.445 63.158 0.00 0.00 0.00 3.61
855 891 1.444553 GGAGACACGACGAGGCAAG 60.445 63.158 0.00 0.00 0.00 4.01
1051 1088 3.738830 AAGAAAGTTAAAAACGGGGGC 57.261 42.857 0.00 0.00 36.23 5.80
1107 1145 2.670592 TGACGGACGAAGCGAGGA 60.671 61.111 0.00 0.00 0.00 3.71
1118 1156 0.532573 GGACATCAGAAGCTGACGGA 59.467 55.000 0.00 0.00 43.63 4.69
1142 1180 0.317160 ACACGCAACAGAGATCGGAA 59.683 50.000 0.00 0.00 0.00 4.30
1195 1233 3.079478 TGCTGCATCCTCTCGGCT 61.079 61.111 0.00 0.00 35.69 5.52
1274 1312 0.318441 TTGTTCCGGCAGACAGAGAG 59.682 55.000 0.00 0.00 0.00 3.20
1275 1313 0.976641 ATTGTTCCGGCAGACAGAGA 59.023 50.000 0.00 0.00 0.00 3.10
1276 1314 1.734465 GAATTGTTCCGGCAGACAGAG 59.266 52.381 0.00 0.00 0.00 3.35
1318 1356 1.927895 ATTAGCACCGAAGAGAAGCG 58.072 50.000 0.00 0.00 0.00 4.68
1319 1357 3.526534 AGAATTAGCACCGAAGAGAAGC 58.473 45.455 0.00 0.00 0.00 3.86
1320 1358 5.872070 AGAAAGAATTAGCACCGAAGAGAAG 59.128 40.000 0.00 0.00 0.00 2.85
1321 1359 5.794894 AGAAAGAATTAGCACCGAAGAGAA 58.205 37.500 0.00 0.00 0.00 2.87
1322 1360 5.407407 AGAAAGAATTAGCACCGAAGAGA 57.593 39.130 0.00 0.00 0.00 3.10
1323 1361 6.487689 AAAGAAAGAATTAGCACCGAAGAG 57.512 37.500 0.00 0.00 0.00 2.85
1324 1362 7.972832 TTAAAGAAAGAATTAGCACCGAAGA 57.027 32.000 0.00 0.00 0.00 2.87
1325 1363 8.902735 GTTTTAAAGAAAGAATTAGCACCGAAG 58.097 33.333 0.00 0.00 0.00 3.79
1326 1364 8.407064 TGTTTTAAAGAAAGAATTAGCACCGAA 58.593 29.630 0.00 0.00 0.00 4.30
1327 1365 7.858879 GTGTTTTAAAGAAAGAATTAGCACCGA 59.141 33.333 0.00 0.00 0.00 4.69
1338 1386 6.292923 TCATCGGAGGTGTTTTAAAGAAAGA 58.707 36.000 0.00 0.00 0.00 2.52
1341 1389 6.371548 CAGATCATCGGAGGTGTTTTAAAGAA 59.628 38.462 0.00 0.00 0.00 2.52
1342 1390 5.874810 CAGATCATCGGAGGTGTTTTAAAGA 59.125 40.000 0.00 0.00 0.00 2.52
1454 1502 0.611618 TTTCGATGCCCCAATGCAGT 60.612 50.000 0.00 0.00 45.93 4.40
1541 1589 3.452627 AGGAGCTACCATTTCAGACGAAT 59.547 43.478 0.00 0.00 42.04 3.34
1666 1714 8.736244 GTTAGGACTTGCTATTCCACAAATAAA 58.264 33.333 7.26 0.00 33.92 1.40
1700 1748 2.590575 CAAACAGGGGACGCGTGT 60.591 61.111 20.70 11.61 0.00 4.49
1711 1759 1.801178 GACTTCCTTCTCGGCAAACAG 59.199 52.381 0.00 0.00 0.00 3.16
1712 1760 1.872237 CGACTTCCTTCTCGGCAAACA 60.872 52.381 0.00 0.00 0.00 2.83
1765 1814 8.765219 GCAATAATACAAGATGTAACTCACGAT 58.235 33.333 0.00 0.00 36.31 3.73
1837 1886 1.069227 CAGGCAACAAACGGCTTAGAC 60.069 52.381 0.00 0.00 37.12 2.59
1942 1991 6.466885 ACAAGTGTAGAATACCTTAGCGAT 57.533 37.500 0.00 0.00 42.12 4.58
2060 2109 1.936547 CCGCTTCTTCATGCTCCTTAC 59.063 52.381 0.00 0.00 0.00 2.34
2140 2189 2.625737 ACATGAGCATGCTGACTGTAC 58.374 47.619 28.27 9.32 42.39 2.90
2315 2364 4.976540 AACAACCTACCTTTAGCTGAGT 57.023 40.909 0.00 0.00 0.00 3.41
2375 2424 9.621629 TCAAAGTTTTCTTAGATAGACCAAACA 57.378 29.630 7.43 0.00 39.48 2.83
2508 2558 3.071892 AGTGGTACGGGATTGTTCTTCAA 59.928 43.478 0.00 0.00 40.53 2.69
2656 2714 7.119997 GCGAATAGAGTTACATGTTTGCTTAG 58.880 38.462 2.30 0.00 0.00 2.18
2680 2738 1.089920 CACCTACAGCAACATCTGGC 58.910 55.000 0.00 0.00 38.36 4.85
2763 2853 7.956943 GCATAATTTTTGAAAGCAACATGGTAC 59.043 33.333 0.00 0.00 32.79 3.34
2951 3042 2.358898 CCATAGCACCATGCCTAAACAC 59.641 50.000 0.00 0.00 46.52 3.32
3130 3224 7.286775 TGAACCTACTATACTACATGTGCATGA 59.713 37.037 17.85 2.50 41.20 3.07
3147 3241 8.634444 CAGCTACAAGAATACTATGAACCTACT 58.366 37.037 0.00 0.00 0.00 2.57
3320 3414 6.259829 GCAAAAATAAAAGGAAGGCAAAGTCA 59.740 34.615 0.00 0.00 0.00 3.41
3453 3547 9.703892 GTAACAGACATAGCTTCTTGATATGAT 57.296 33.333 7.74 0.00 45.11 2.45
3539 3633 8.752766 AGATGCAGATTTTGTAACAAAGATTG 57.247 30.769 0.00 0.00 0.00 2.67
3679 3773 5.278561 GCCATCTAGCTCGACACTAGTATTT 60.279 44.000 14.42 0.00 38.60 1.40
3692 3786 2.169352 TCTCACTTTGGCCATCTAGCTC 59.831 50.000 6.09 0.00 0.00 4.09
3832 3926 8.565896 AAGCTACTGTAAATTGATGACATGAA 57.434 30.769 0.00 0.00 0.00 2.57
4013 4107 3.713826 ACACAAAATGGGGTCGACTAT 57.286 42.857 16.46 5.15 0.00 2.12
4175 4269 1.032014 GTGGTGCAAGTGGTGTCATT 58.968 50.000 0.00 0.00 0.00 2.57
4277 4371 3.138884 TCAGTGCCACACATGTACAAT 57.861 42.857 0.00 0.00 36.74 2.71
4292 4386 8.720562 TCCGCATAAATGATAAATACATCAGTG 58.279 33.333 0.00 0.00 38.30 3.66
4308 4402 9.515020 CAGTTTACAAAATACATCCGCATAAAT 57.485 29.630 0.00 0.00 0.00 1.40
4316 4410 6.509418 TCAGGCAGTTTACAAAATACATCC 57.491 37.500 0.00 0.00 0.00 3.51
4335 4429 6.523840 TGGTTTTTCCTTTCATCATTTCAGG 58.476 36.000 0.00 0.00 37.07 3.86
4357 4451 3.117888 AGGGCTGACAATTGGTATACTGG 60.118 47.826 10.83 0.00 0.00 4.00
4491 4585 3.270027 TCACATCCTGACTATTTTGCCG 58.730 45.455 0.00 0.00 0.00 5.69
4625 4722 6.533730 TGGCTAAGTTGTATAGGATCAATGG 58.466 40.000 0.00 0.00 0.00 3.16
4634 4731 5.347093 CGCATGAGATGGCTAAGTTGTATAG 59.653 44.000 0.00 0.00 0.00 1.31
4681 4778 6.208204 AGCCAAATATTCATAGCCACAAGATC 59.792 38.462 0.00 0.00 0.00 2.75
4871 4975 2.604174 CGTCTGTTTGGGTCGGCAC 61.604 63.158 0.00 0.00 0.00 5.01
4872 4976 2.280524 CGTCTGTTTGGGTCGGCA 60.281 61.111 0.00 0.00 0.00 5.69
4885 4989 3.041940 CGGACAAAAGCGCCGTCT 61.042 61.111 2.29 0.00 40.17 4.18
4890 4994 1.660264 CCCAAACGGACAAAAGCGC 60.660 57.895 0.00 0.00 0.00 5.92
4924 5028 3.423154 CTCAAACAGGGCGGACGC 61.423 66.667 8.39 8.39 41.06 5.19
5018 5122 6.713520 GTGAAACAATGCAAAATTTGTGCTA 58.286 32.000 12.62 0.36 38.85 3.49
5020 5124 5.853175 GTGAAACAATGCAAAATTTGTGC 57.147 34.783 7.60 4.51 38.65 4.57
5036 5144 5.529014 AATGCAAAAGTTGTGTGTGAAAC 57.471 34.783 0.00 0.00 37.35 2.78
5098 5206 8.925161 TGCTATTTATTTGGTTGAAACTATGC 57.075 30.769 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.