Multiple sequence alignment - TraesCS4B01G210400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G210400 chr4B 100.000 5088 0 0 1 5088 449121533 449126620 0.000000e+00 9396.0
1 TraesCS4B01G210400 chr4B 93.072 664 46 0 4423 5086 139383863 139383200 0.000000e+00 972.0
2 TraesCS4B01G210400 chr4B 91.416 664 56 1 4424 5086 106966366 106967029 0.000000e+00 909.0
3 TraesCS4B01G210400 chr4D 94.079 2297 102 17 2144 4423 363677581 363679860 0.000000e+00 3458.0
4 TraesCS4B01G210400 chr4D 91.647 1724 60 22 343 2041 363675919 363677583 0.000000e+00 2309.0
5 TraesCS4B01G210400 chr4D 93.333 345 18 4 1 345 461464478 461464817 5.880000e-139 505.0
6 TraesCS4B01G210400 chr4D 90.643 171 8 4 1842 2012 100229656 100229494 2.380000e-53 220.0
7 TraesCS4B01G210400 chr4D 90.580 138 10 3 2011 2146 260457753 260457617 4.050000e-41 180.0
8 TraesCS4B01G210400 chr4D 85.294 136 17 2 216 349 442613540 442613406 2.470000e-28 137.0
9 TraesCS4B01G210400 chr4A 93.244 2013 108 17 2127 4121 101750136 101748134 0.000000e+00 2939.0
10 TraesCS4B01G210400 chr4A 90.435 1746 81 26 346 2065 101751940 101750255 0.000000e+00 2220.0
11 TraesCS4B01G210400 chr4A 94.419 215 7 2 4210 4423 101747696 101747486 4.910000e-85 326.0
12 TraesCS4B01G210400 chr4A 87.218 133 16 1 216 347 719789412 719789280 3.170000e-32 150.0
13 TraesCS4B01G210400 chr7B 93.233 665 44 1 4423 5086 14110038 14110702 0.000000e+00 977.0
14 TraesCS4B01G210400 chr7B 90.541 666 62 1 4423 5088 640469241 640469905 0.000000e+00 880.0
15 TraesCS4B01G210400 chr7B 82.336 351 22 18 1 348 746368960 746368647 8.400000e-68 268.0
16 TraesCS4B01G210400 chr7B 95.122 123 5 1 2038 2160 578195093 578195214 5.200000e-45 193.0
17 TraesCS4B01G210400 chr2B 92.332 639 47 2 4450 5086 109324629 109323991 0.000000e+00 907.0
18 TraesCS4B01G210400 chr2B 90.882 669 58 2 4423 5088 801046444 801047112 0.000000e+00 894.0
19 TraesCS4B01G210400 chr2B 89.714 175 10 6 1843 2016 585712655 585712488 3.080000e-52 217.0
20 TraesCS4B01G210400 chr2B 95.349 43 2 0 317 359 79034973 79034931 9.140000e-08 69.4
21 TraesCS4B01G210400 chr6B 90.705 667 61 1 4423 5088 716635976 716636642 0.000000e+00 887.0
22 TraesCS4B01G210400 chr6B 89.836 669 65 2 4423 5088 91210111 91210779 0.000000e+00 856.0
23 TraesCS4B01G210400 chr1B 89.371 668 69 1 4423 5088 614296228 614296895 0.000000e+00 839.0
24 TraesCS4B01G210400 chr1B 99.091 110 1 0 2039 2148 624662919 624663028 1.120000e-46 198.0
25 TraesCS4B01G210400 chr1B 91.045 134 11 1 2038 2171 304517095 304517227 4.050000e-41 180.0
26 TraesCS4B01G210400 chr1B 84.848 132 17 3 216 345 626134177 626134047 4.130000e-26 130.0
27 TraesCS4B01G210400 chr3D 91.168 351 27 3 1 349 583393070 583393418 1.660000e-129 473.0
28 TraesCS4B01G210400 chr3D 97.414 116 3 0 2038 2153 435646850 435646735 1.120000e-46 198.0
29 TraesCS4B01G210400 chr1A 84.270 356 29 14 1 355 566212196 566211867 6.350000e-84 322.0
30 TraesCS4B01G210400 chr1A 81.871 342 35 17 1 340 382240506 382240822 3.910000e-66 263.0
31 TraesCS4B01G210400 chr3A 90.751 173 13 2 1839 2011 212770134 212769965 1.430000e-55 228.0
32 TraesCS4B01G210400 chr3B 91.176 170 8 4 1843 2012 552226568 552226406 1.840000e-54 224.0
33 TraesCS4B01G210400 chr3B 99.123 114 1 0 2035 2148 235920163 235920050 6.680000e-49 206.0
34 TraesCS4B01G210400 chr3B 96.581 117 4 0 2030 2146 217574977 217575093 1.450000e-45 195.0
35 TraesCS4B01G210400 chr3B 93.651 126 6 2 2027 2151 425081029 425080905 2.420000e-43 187.0
36 TraesCS4B01G210400 chr2D 89.714 175 10 6 1843 2016 498473158 498472991 3.080000e-52 217.0
37 TraesCS4B01G210400 chr6A 89.535 172 14 2 1843 2014 112005174 112005007 1.110000e-51 215.0
38 TraesCS4B01G210400 chr5A 86.869 198 12 9 1816 2011 636415319 636415134 5.160000e-50 209.0
39 TraesCS4B01G210400 chr5B 97.500 120 1 2 2029 2147 90515271 90515389 2.400000e-48 204.0
40 TraesCS4B01G210400 chr7A 85.185 162 18 5 1 159 681713222 681713064 1.470000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G210400 chr4B 449121533 449126620 5087 False 9396.000000 9396 100.000000 1 5088 1 chr4B.!!$F2 5087
1 TraesCS4B01G210400 chr4B 139383200 139383863 663 True 972.000000 972 93.072000 4423 5086 1 chr4B.!!$R1 663
2 TraesCS4B01G210400 chr4B 106966366 106967029 663 False 909.000000 909 91.416000 4424 5086 1 chr4B.!!$F1 662
3 TraesCS4B01G210400 chr4D 363675919 363679860 3941 False 2883.500000 3458 92.863000 343 4423 2 chr4D.!!$F2 4080
4 TraesCS4B01G210400 chr4A 101747486 101751940 4454 True 1828.333333 2939 92.699333 346 4423 3 chr4A.!!$R2 4077
5 TraesCS4B01G210400 chr7B 14110038 14110702 664 False 977.000000 977 93.233000 4423 5086 1 chr7B.!!$F1 663
6 TraesCS4B01G210400 chr7B 640469241 640469905 664 False 880.000000 880 90.541000 4423 5088 1 chr7B.!!$F3 665
7 TraesCS4B01G210400 chr2B 109323991 109324629 638 True 907.000000 907 92.332000 4450 5086 1 chr2B.!!$R2 636
8 TraesCS4B01G210400 chr2B 801046444 801047112 668 False 894.000000 894 90.882000 4423 5088 1 chr2B.!!$F1 665
9 TraesCS4B01G210400 chr6B 716635976 716636642 666 False 887.000000 887 90.705000 4423 5088 1 chr6B.!!$F2 665
10 TraesCS4B01G210400 chr6B 91210111 91210779 668 False 856.000000 856 89.836000 4423 5088 1 chr6B.!!$F1 665
11 TraesCS4B01G210400 chr1B 614296228 614296895 667 False 839.000000 839 89.371000 4423 5088 1 chr1B.!!$F2 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.034896 GGGCCGATACGATGGATGTT 59.965 55.0 0.00 0.00 0.00 2.71 F
324 325 0.168788 GATGGTCATTGTGCCACACG 59.831 55.0 0.00 0.00 37.62 4.49 F
670 677 0.179084 ACCCATCGCACAGGTAATCG 60.179 55.0 0.00 0.00 30.13 3.34 F
869 890 0.247419 GCGTGAGTCACATTGCATCG 60.247 55.0 22.66 7.54 33.40 3.84 F
2295 2508 0.179092 TCTGATCGCATGGCAGACTG 60.179 55.0 0.00 0.00 34.02 3.51 F
3433 3657 0.524392 CACGAGTGAGATCCTGCGTC 60.524 60.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1807 1848 0.601046 CAGTTTCTGCTCGTCCTGCA 60.601 55.000 0.0 0.0 38.81 4.41 R
2214 2422 0.613260 TGCTGCCCTTTCGTAGATGT 59.387 50.000 0.0 0.0 35.04 3.06 R
2215 2423 1.959042 ATGCTGCCCTTTCGTAGATG 58.041 50.000 0.0 0.0 35.04 2.90 R
2860 3074 2.034053 CAGTTGCCACAATGGTTTACGT 59.966 45.455 0.0 0.0 40.46 3.57 R
3787 4012 0.175989 GTTCCTCGGTCAGTGGGATC 59.824 60.000 0.0 0.0 34.38 3.36 R
4983 5561 0.722676 ATCTCCCTTCCACCCCTACA 59.277 55.000 0.0 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.710692 CTTTTAAAGTTGTTGGATGGCATC 57.289 37.500 19.23 19.23 0.00 3.91
24 25 5.798125 TTTAAAGTTGTTGGATGGCATCA 57.202 34.783 27.39 12.00 0.00 3.07
25 26 5.999205 TTAAAGTTGTTGGATGGCATCAT 57.001 34.783 27.39 0.00 36.09 2.45
26 27 7.473735 TTTAAAGTTGTTGGATGGCATCATA 57.526 32.000 27.39 13.92 32.98 2.15
27 28 5.587388 AAAGTTGTTGGATGGCATCATAG 57.413 39.130 27.39 0.00 32.98 2.23
28 29 3.559069 AGTTGTTGGATGGCATCATAGG 58.441 45.455 27.39 0.00 32.98 2.57
29 30 1.985473 TGTTGGATGGCATCATAGGC 58.015 50.000 27.39 11.28 32.98 3.93
30 31 1.496001 TGTTGGATGGCATCATAGGCT 59.504 47.619 27.39 0.00 32.98 4.58
31 32 2.091720 TGTTGGATGGCATCATAGGCTT 60.092 45.455 27.39 0.00 32.98 4.35
32 33 2.961062 GTTGGATGGCATCATAGGCTTT 59.039 45.455 27.39 0.00 32.98 3.51
33 34 3.317455 TGGATGGCATCATAGGCTTTT 57.683 42.857 27.39 0.00 32.98 2.27
34 35 3.645434 TGGATGGCATCATAGGCTTTTT 58.355 40.909 27.39 0.00 32.98 1.94
86 87 9.227777 TCTTTTTCTTTAGTAAGATTGTAGGGC 57.772 33.333 0.00 0.00 40.01 5.19
87 88 7.933215 TTTTCTTTAGTAAGATTGTAGGGCC 57.067 36.000 0.00 0.00 40.01 5.80
88 89 5.625568 TCTTTAGTAAGATTGTAGGGCCC 57.374 43.478 16.46 16.46 35.49 5.80
89 90 5.034200 TCTTTAGTAAGATTGTAGGGCCCA 58.966 41.667 27.56 7.27 35.49 5.36
90 91 5.489637 TCTTTAGTAAGATTGTAGGGCCCAA 59.510 40.000 27.56 10.58 35.49 4.12
91 92 5.987019 TTAGTAAGATTGTAGGGCCCAAT 57.013 39.130 27.56 15.74 35.30 3.16
92 93 7.348801 TCTTTAGTAAGATTGTAGGGCCCAATA 59.651 37.037 27.56 5.38 35.49 1.90
93 94 7.642094 TTAGTAAGATTGTAGGGCCCAATAT 57.358 36.000 27.56 9.83 32.84 1.28
94 95 8.745149 TTAGTAAGATTGTAGGGCCCAATATA 57.255 34.615 27.56 4.01 32.84 0.86
95 96 7.259088 AGTAAGATTGTAGGGCCCAATATAG 57.741 40.000 27.56 0.00 32.84 1.31
96 97 7.023120 AGTAAGATTGTAGGGCCCAATATAGA 58.977 38.462 27.56 2.42 32.84 1.98
97 98 6.380079 AAGATTGTAGGGCCCAATATAGAG 57.620 41.667 27.56 0.00 32.84 2.43
98 99 5.665701 AGATTGTAGGGCCCAATATAGAGA 58.334 41.667 27.56 0.00 32.84 3.10
99 100 6.091555 AGATTGTAGGGCCCAATATAGAGAA 58.908 40.000 27.56 4.86 32.84 2.87
100 101 5.825593 TTGTAGGGCCCAATATAGAGAAG 57.174 43.478 27.56 0.00 0.00 2.85
101 102 4.168101 TGTAGGGCCCAATATAGAGAAGG 58.832 47.826 27.56 0.00 0.00 3.46
102 103 1.988846 AGGGCCCAATATAGAGAAGGC 59.011 52.381 27.56 0.00 39.73 4.35
105 106 3.064900 GCCCAATATAGAGAAGGCCTG 57.935 52.381 5.69 0.00 34.23 4.85
106 107 2.373502 GCCCAATATAGAGAAGGCCTGT 59.626 50.000 5.69 0.00 34.23 4.00
107 108 3.583086 GCCCAATATAGAGAAGGCCTGTA 59.417 47.826 5.69 0.00 34.23 2.74
108 109 4.323104 GCCCAATATAGAGAAGGCCTGTAG 60.323 50.000 5.69 0.00 34.23 2.74
109 110 4.223923 CCCAATATAGAGAAGGCCTGTAGG 59.776 50.000 5.69 0.00 38.53 3.18
110 111 4.223923 CCAATATAGAGAAGGCCTGTAGGG 59.776 50.000 5.69 0.00 35.18 3.53
119 120 4.169271 CCTGTAGGGCCGATACGA 57.831 61.111 11.04 2.09 0.00 3.43
120 121 2.654802 CCTGTAGGGCCGATACGAT 58.345 57.895 11.04 0.00 0.00 3.73
121 122 0.243907 CCTGTAGGGCCGATACGATG 59.756 60.000 11.04 5.28 0.00 3.84
122 123 0.243907 CTGTAGGGCCGATACGATGG 59.756 60.000 11.04 0.00 0.00 3.51
123 124 0.178984 TGTAGGGCCGATACGATGGA 60.179 55.000 11.04 0.00 0.00 3.41
124 125 1.183549 GTAGGGCCGATACGATGGAT 58.816 55.000 0.00 0.00 0.00 3.41
125 126 1.135083 GTAGGGCCGATACGATGGATG 60.135 57.143 0.00 0.00 0.00 3.51
126 127 0.832135 AGGGCCGATACGATGGATGT 60.832 55.000 0.00 0.00 0.00 3.06
127 128 0.034896 GGGCCGATACGATGGATGTT 59.965 55.000 0.00 0.00 0.00 2.71
128 129 1.429463 GGCCGATACGATGGATGTTC 58.571 55.000 0.00 0.00 0.00 3.18
129 130 1.060713 GCCGATACGATGGATGTTCG 58.939 55.000 0.00 0.00 42.20 3.95
130 131 1.698165 CCGATACGATGGATGTTCGG 58.302 55.000 0.00 0.00 40.83 4.30
131 132 1.668919 CCGATACGATGGATGTTCGGG 60.669 57.143 1.37 0.00 41.74 5.14
132 133 1.668919 CGATACGATGGATGTTCGGGG 60.669 57.143 0.00 0.00 40.83 5.73
133 134 1.343465 GATACGATGGATGTTCGGGGT 59.657 52.381 0.00 0.00 40.83 4.95
134 135 0.462375 TACGATGGATGTTCGGGGTG 59.538 55.000 0.00 0.00 40.83 4.61
135 136 1.523711 CGATGGATGTTCGGGGTGG 60.524 63.158 0.00 0.00 33.05 4.61
136 137 1.607612 GATGGATGTTCGGGGTGGT 59.392 57.895 0.00 0.00 0.00 4.16
137 138 0.748005 GATGGATGTTCGGGGTGGTG 60.748 60.000 0.00 0.00 0.00 4.17
138 139 2.045340 GGATGTTCGGGGTGGTGG 60.045 66.667 0.00 0.00 0.00 4.61
139 140 2.750237 GATGTTCGGGGTGGTGGC 60.750 66.667 0.00 0.00 0.00 5.01
140 141 3.561120 GATGTTCGGGGTGGTGGCA 62.561 63.158 0.00 0.00 0.00 4.92
141 142 3.567579 ATGTTCGGGGTGGTGGCAG 62.568 63.158 0.00 0.00 0.00 4.85
156 157 2.827190 CAGCCATCGCCACTGCAT 60.827 61.111 0.00 0.00 37.32 3.96
157 158 2.827190 AGCCATCGCCACTGCATG 60.827 61.111 0.00 0.00 37.32 4.06
158 159 2.825387 GCCATCGCCACTGCATGA 60.825 61.111 0.00 0.00 37.32 3.07
159 160 2.409055 GCCATCGCCACTGCATGAA 61.409 57.895 0.00 0.00 37.32 2.57
160 161 1.936436 GCCATCGCCACTGCATGAAA 61.936 55.000 0.00 0.00 37.32 2.69
161 162 0.742505 CCATCGCCACTGCATGAAAT 59.257 50.000 0.00 0.00 37.32 2.17
162 163 1.268896 CCATCGCCACTGCATGAAATC 60.269 52.381 0.00 0.00 37.32 2.17
163 164 0.659427 ATCGCCACTGCATGAAATCG 59.341 50.000 0.00 0.00 37.32 3.34
164 165 0.673333 TCGCCACTGCATGAAATCGT 60.673 50.000 0.00 0.00 37.32 3.73
165 166 0.521867 CGCCACTGCATGAAATCGTG 60.522 55.000 0.00 0.00 37.32 4.35
171 172 4.676444 CATGAAATCGTGCAGGCG 57.324 55.556 0.35 0.00 0.00 5.52
172 173 1.063006 CATGAAATCGTGCAGGCGG 59.937 57.895 0.35 0.00 0.00 6.13
173 174 2.114670 ATGAAATCGTGCAGGCGGG 61.115 57.895 0.35 0.00 0.00 6.13
174 175 3.508840 GAAATCGTGCAGGCGGGG 61.509 66.667 0.35 0.00 0.00 5.73
175 176 3.969250 GAAATCGTGCAGGCGGGGA 62.969 63.158 0.35 0.00 0.00 4.81
176 177 3.976701 AAATCGTGCAGGCGGGGAG 62.977 63.158 0.35 0.00 0.00 4.30
183 184 4.292178 CAGGCGGGGAGAGCGATC 62.292 72.222 0.00 0.00 35.00 3.69
186 187 4.632458 GCGGGGAGAGCGATCGTC 62.632 72.222 17.81 12.66 0.00 4.20
187 188 3.967335 CGGGGAGAGCGATCGTCC 61.967 72.222 17.81 15.34 0.00 4.79
190 191 3.207354 GGAGAGCGATCGTCCCAA 58.793 61.111 17.81 0.00 0.00 4.12
191 192 1.066587 GGAGAGCGATCGTCCCAAG 59.933 63.158 17.81 0.00 0.00 3.61
192 193 1.590259 GAGAGCGATCGTCCCAAGC 60.590 63.158 17.81 0.00 0.00 4.01
193 194 2.184322 GAGCGATCGTCCCAAGCA 59.816 61.111 17.81 0.00 0.00 3.91
194 195 1.447838 GAGCGATCGTCCCAAGCAA 60.448 57.895 17.81 0.00 0.00 3.91
195 196 0.811616 GAGCGATCGTCCCAAGCAAT 60.812 55.000 17.81 0.00 0.00 3.56
196 197 0.392998 AGCGATCGTCCCAAGCAATT 60.393 50.000 17.81 0.00 0.00 2.32
197 198 0.451783 GCGATCGTCCCAAGCAATTT 59.548 50.000 17.81 0.00 0.00 1.82
198 199 1.795162 GCGATCGTCCCAAGCAATTTG 60.795 52.381 17.81 0.00 36.50 2.32
199 200 1.468520 CGATCGTCCCAAGCAATTTGT 59.531 47.619 7.03 0.00 34.87 2.83
200 201 2.095263 CGATCGTCCCAAGCAATTTGTT 60.095 45.455 7.03 0.00 34.87 2.83
201 202 3.501950 GATCGTCCCAAGCAATTTGTTC 58.498 45.455 0.00 0.00 34.87 3.18
202 203 1.265635 TCGTCCCAAGCAATTTGTTCG 59.734 47.619 0.00 0.00 34.87 3.95
203 204 1.665735 CGTCCCAAGCAATTTGTTCGG 60.666 52.381 0.00 0.00 34.87 4.30
204 205 1.339929 GTCCCAAGCAATTTGTTCGGT 59.660 47.619 0.00 0.00 34.87 4.69
205 206 1.611491 TCCCAAGCAATTTGTTCGGTC 59.389 47.619 0.00 0.00 34.87 4.79
206 207 1.336795 CCCAAGCAATTTGTTCGGTCC 60.337 52.381 0.00 0.00 34.87 4.46
207 208 1.339610 CCAAGCAATTTGTTCGGTCCA 59.660 47.619 0.00 0.00 34.87 4.02
208 209 2.607771 CCAAGCAATTTGTTCGGTCCAG 60.608 50.000 0.00 0.00 34.87 3.86
209 210 0.598065 AGCAATTTGTTCGGTCCAGC 59.402 50.000 0.00 0.00 0.00 4.85
210 211 0.598065 GCAATTTGTTCGGTCCAGCT 59.402 50.000 0.00 0.00 0.00 4.24
211 212 1.666888 GCAATTTGTTCGGTCCAGCTG 60.667 52.381 6.78 6.78 0.00 4.24
212 213 0.598065 AATTTGTTCGGTCCAGCTGC 59.402 50.000 8.66 0.00 0.00 5.25
213 214 1.244019 ATTTGTTCGGTCCAGCTGCC 61.244 55.000 8.66 3.98 0.00 4.85
214 215 2.337879 TTTGTTCGGTCCAGCTGCCT 62.338 55.000 8.66 0.00 0.00 4.75
215 216 2.032681 GTTCGGTCCAGCTGCCTT 59.967 61.111 8.66 0.00 0.00 4.35
216 217 1.600916 GTTCGGTCCAGCTGCCTTT 60.601 57.895 8.66 0.00 0.00 3.11
217 218 1.302511 TTCGGTCCAGCTGCCTTTC 60.303 57.895 8.66 0.00 0.00 2.62
218 219 2.747855 CGGTCCAGCTGCCTTTCC 60.748 66.667 8.66 4.63 0.00 3.13
219 220 2.759795 GGTCCAGCTGCCTTTCCT 59.240 61.111 8.66 0.00 0.00 3.36
220 221 1.676967 GGTCCAGCTGCCTTTCCTG 60.677 63.158 8.66 0.00 0.00 3.86
221 222 1.073897 GTCCAGCTGCCTTTCCTGT 59.926 57.895 8.66 0.00 0.00 4.00
222 223 0.957888 GTCCAGCTGCCTTTCCTGTC 60.958 60.000 8.66 0.00 0.00 3.51
223 224 1.073722 CCAGCTGCCTTTCCTGTCA 59.926 57.895 8.66 0.00 0.00 3.58
224 225 1.239968 CCAGCTGCCTTTCCTGTCAC 61.240 60.000 8.66 0.00 0.00 3.67
225 226 0.535780 CAGCTGCCTTTCCTGTCACA 60.536 55.000 0.00 0.00 0.00 3.58
226 227 0.536006 AGCTGCCTTTCCTGTCACAC 60.536 55.000 0.00 0.00 0.00 3.82
227 228 1.845809 GCTGCCTTTCCTGTCACACG 61.846 60.000 0.00 0.00 0.00 4.49
228 229 0.532862 CTGCCTTTCCTGTCACACGT 60.533 55.000 0.00 0.00 0.00 4.49
229 230 0.813610 TGCCTTTCCTGTCACACGTG 60.814 55.000 15.48 15.48 0.00 4.49
230 231 0.814010 GCCTTTCCTGTCACACGTGT 60.814 55.000 17.22 17.22 0.00 4.49
231 232 0.937304 CCTTTCCTGTCACACGTGTG 59.063 55.000 37.04 37.04 46.91 3.82
232 233 0.937304 CTTTCCTGTCACACGTGTGG 59.063 55.000 39.88 27.82 45.65 4.17
233 234 0.462937 TTTCCTGTCACACGTGTGGG 60.463 55.000 39.88 33.10 45.65 4.61
234 235 2.933878 TTCCTGTCACACGTGTGGGC 62.934 60.000 39.88 32.25 45.65 5.36
235 236 2.203001 CTGTCACACGTGTGGGCA 60.203 61.111 39.88 34.29 45.65 5.36
236 237 2.203001 TGTCACACGTGTGGGCAG 60.203 61.111 39.88 20.74 45.65 4.85
237 238 2.203015 GTCACACGTGTGGGCAGT 60.203 61.111 39.88 7.83 45.65 4.40
238 239 1.817941 GTCACACGTGTGGGCAGTT 60.818 57.895 39.88 7.04 45.65 3.16
239 240 1.078072 TCACACGTGTGGGCAGTTT 60.078 52.632 39.88 6.26 45.65 2.66
240 241 1.092921 TCACACGTGTGGGCAGTTTC 61.093 55.000 39.88 0.00 45.65 2.78
241 242 1.078072 ACACGTGTGGGCAGTTTCA 60.078 52.632 22.71 0.00 34.19 2.69
242 243 0.678366 ACACGTGTGGGCAGTTTCAA 60.678 50.000 22.71 0.00 34.19 2.69
243 244 0.667993 CACGTGTGGGCAGTTTCAAT 59.332 50.000 7.58 0.00 0.00 2.57
244 245 0.667993 ACGTGTGGGCAGTTTCAATG 59.332 50.000 0.00 0.00 0.00 2.82
245 246 0.667993 CGTGTGGGCAGTTTCAATGT 59.332 50.000 0.00 0.00 0.00 2.71
246 247 1.066908 CGTGTGGGCAGTTTCAATGTT 59.933 47.619 0.00 0.00 0.00 2.71
247 248 2.742774 GTGTGGGCAGTTTCAATGTTC 58.257 47.619 0.00 0.00 0.00 3.18
248 249 1.336440 TGTGGGCAGTTTCAATGTTCG 59.664 47.619 0.00 0.00 0.00 3.95
249 250 0.313672 TGGGCAGTTTCAATGTTCGC 59.686 50.000 0.00 0.00 0.00 4.70
250 251 0.388520 GGGCAGTTTCAATGTTCGCC 60.389 55.000 0.00 0.00 37.33 5.54
251 252 0.388520 GGCAGTTTCAATGTTCGCCC 60.389 55.000 0.00 0.00 31.76 6.13
252 253 0.313672 GCAGTTTCAATGTTCGCCCA 59.686 50.000 0.00 0.00 0.00 5.36
253 254 1.930371 GCAGTTTCAATGTTCGCCCAC 60.930 52.381 0.00 0.00 0.00 4.61
254 255 1.336440 CAGTTTCAATGTTCGCCCACA 59.664 47.619 0.00 0.00 0.00 4.17
255 256 1.336755 AGTTTCAATGTTCGCCCACAC 59.663 47.619 0.00 0.00 0.00 3.82
256 257 1.066303 GTTTCAATGTTCGCCCACACA 59.934 47.619 0.00 0.00 0.00 3.72
257 258 1.393603 TTCAATGTTCGCCCACACAA 58.606 45.000 0.00 0.00 0.00 3.33
258 259 0.665835 TCAATGTTCGCCCACACAAC 59.334 50.000 0.00 0.00 0.00 3.32
259 260 0.660005 CAATGTTCGCCCACACAACG 60.660 55.000 0.00 0.00 0.00 4.10
260 261 1.098712 AATGTTCGCCCACACAACGT 61.099 50.000 0.00 0.00 0.00 3.99
261 262 1.503818 ATGTTCGCCCACACAACGTC 61.504 55.000 0.00 0.00 0.00 4.34
262 263 2.962786 TTCGCCCACACAACGTCG 60.963 61.111 0.00 0.00 0.00 5.12
263 264 3.719883 TTCGCCCACACAACGTCGT 62.720 57.895 0.00 0.00 0.00 4.34
264 265 3.995669 CGCCCACACAACGTCGTG 61.996 66.667 4.78 4.78 42.81 4.35
270 271 2.587753 CACAACGTCGTGTGGGCT 60.588 61.111 11.74 0.00 44.29 5.19
271 272 2.587753 ACAACGTCGTGTGGGCTG 60.588 61.111 0.00 0.00 0.00 4.85
272 273 4.012895 CAACGTCGTGTGGGCTGC 62.013 66.667 0.00 0.00 0.00 5.25
273 274 4.539083 AACGTCGTGTGGGCTGCA 62.539 61.111 0.00 0.00 0.00 4.41
274 275 3.825160 AACGTCGTGTGGGCTGCAT 62.825 57.895 0.00 0.00 0.00 3.96
275 276 3.792047 CGTCGTGTGGGCTGCATG 61.792 66.667 0.50 0.00 0.00 4.06
276 277 4.107051 GTCGTGTGGGCTGCATGC 62.107 66.667 11.82 11.82 41.94 4.06
279 280 4.409218 GTGTGGGCTGCATGCGTG 62.409 66.667 14.09 9.68 44.05 5.34
280 281 4.953010 TGTGGGCTGCATGCGTGT 62.953 61.111 14.09 0.00 44.05 4.49
281 282 2.745884 GTGGGCTGCATGCGTGTA 60.746 61.111 14.09 1.43 44.05 2.90
282 283 2.114670 GTGGGCTGCATGCGTGTAT 61.115 57.895 14.09 0.00 44.05 2.29
283 284 2.114051 TGGGCTGCATGCGTGTATG 61.114 57.895 14.09 0.00 44.05 2.39
288 289 3.186106 GCATGCGTGTATGCCACA 58.814 55.556 11.27 0.00 45.93 4.17
295 296 2.745884 TGTATGCCACACAGCGCC 60.746 61.111 2.29 0.00 34.65 6.53
296 297 2.745884 GTATGCCACACAGCGCCA 60.746 61.111 2.29 0.00 34.65 5.69
297 298 2.114670 GTATGCCACACAGCGCCAT 61.115 57.895 2.29 0.27 34.65 4.40
298 299 2.114051 TATGCCACACAGCGCCATG 61.114 57.895 2.29 5.14 34.65 3.66
299 300 2.818291 TATGCCACACAGCGCCATGT 62.818 55.000 2.29 5.95 34.65 3.21
304 305 3.792047 CACAGCGCCATGTGGTCG 61.792 66.667 19.13 10.22 45.53 4.79
306 307 4.758251 CAGCGCCATGTGGTCGGA 62.758 66.667 2.29 0.00 36.01 4.55
307 308 3.785859 AGCGCCATGTGGTCGGAT 61.786 61.111 2.29 0.00 36.01 4.18
308 309 3.576356 GCGCCATGTGGTCGGATG 61.576 66.667 14.45 0.00 36.01 3.51
309 310 2.896854 CGCCATGTGGTCGGATGG 60.897 66.667 0.35 0.00 41.95 3.51
310 311 2.272146 GCCATGTGGTCGGATGGT 59.728 61.111 0.35 0.00 41.22 3.55
311 312 1.819632 GCCATGTGGTCGGATGGTC 60.820 63.158 0.35 0.00 41.22 4.02
312 313 1.601703 CCATGTGGTCGGATGGTCA 59.398 57.895 0.00 0.00 35.33 4.02
313 314 0.181114 CCATGTGGTCGGATGGTCAT 59.819 55.000 0.00 0.00 35.33 3.06
314 315 1.408683 CCATGTGGTCGGATGGTCATT 60.409 52.381 0.00 0.00 35.33 2.57
315 316 1.672363 CATGTGGTCGGATGGTCATTG 59.328 52.381 0.00 0.00 0.00 2.82
316 317 0.690192 TGTGGTCGGATGGTCATTGT 59.310 50.000 0.00 0.00 0.00 2.71
317 318 1.086696 GTGGTCGGATGGTCATTGTG 58.913 55.000 0.00 0.00 0.00 3.33
318 319 0.676466 TGGTCGGATGGTCATTGTGC 60.676 55.000 0.00 0.00 0.00 4.57
319 320 1.376609 GGTCGGATGGTCATTGTGCC 61.377 60.000 0.00 0.00 0.00 5.01
320 321 0.676466 GTCGGATGGTCATTGTGCCA 60.676 55.000 5.48 5.48 39.33 4.92
321 322 0.676466 TCGGATGGTCATTGTGCCAC 60.676 55.000 5.19 0.00 37.62 5.01
322 323 0.959867 CGGATGGTCATTGTGCCACA 60.960 55.000 0.00 0.00 37.62 4.17
323 324 0.527565 GGATGGTCATTGTGCCACAC 59.472 55.000 0.00 0.00 37.62 3.82
324 325 0.168788 GATGGTCATTGTGCCACACG 59.831 55.000 0.00 0.00 37.62 4.49
325 326 0.537143 ATGGTCATTGTGCCACACGT 60.537 50.000 0.00 0.00 37.62 4.49
326 327 1.282570 GGTCATTGTGCCACACGTG 59.717 57.895 15.48 15.48 37.14 4.49
327 328 1.444119 GGTCATTGTGCCACACGTGT 61.444 55.000 17.22 17.22 37.14 4.49
328 329 0.316937 GTCATTGTGCCACACGTGTG 60.317 55.000 36.13 36.13 45.23 3.82
338 339 0.438445 CACACGTGTGGCACTTATCG 59.562 55.000 35.65 18.40 42.10 2.92
339 340 0.669318 ACACGTGTGGCACTTATCGG 60.669 55.000 22.71 13.07 34.19 4.18
340 341 1.740296 ACGTGTGGCACTTATCGGC 60.740 57.895 19.83 0.00 31.34 5.54
341 342 2.798501 CGTGTGGCACTTATCGGCG 61.799 63.158 19.83 0.00 31.34 6.46
342 343 1.740296 GTGTGGCACTTATCGGCGT 60.740 57.895 19.83 0.00 0.00 5.68
343 344 1.447140 TGTGGCACTTATCGGCGTC 60.447 57.895 19.83 0.00 0.00 5.19
344 345 2.171725 GTGGCACTTATCGGCGTCC 61.172 63.158 11.13 0.00 0.00 4.79
345 346 2.185867 GGCACTTATCGGCGTCCA 59.814 61.111 6.85 0.00 0.00 4.02
346 347 1.448893 GGCACTTATCGGCGTCCAA 60.449 57.895 6.85 0.00 0.00 3.53
670 677 0.179084 ACCCATCGCACAGGTAATCG 60.179 55.000 0.00 0.00 30.13 3.34
687 694 1.215679 TCGTTCCTCCTCCTCCTCCT 61.216 60.000 0.00 0.00 0.00 3.69
690 697 0.855855 TTCCTCCTCCTCCTCCTCCA 60.856 60.000 0.00 0.00 0.00 3.86
692 699 1.075600 CTCCTCCTCCTCCTCCACC 60.076 68.421 0.00 0.00 0.00 4.61
693 700 2.443016 CCTCCTCCTCCTCCACCG 60.443 72.222 0.00 0.00 0.00 4.94
694 701 3.151022 CTCCTCCTCCTCCACCGC 61.151 72.222 0.00 0.00 0.00 5.68
695 702 3.965026 CTCCTCCTCCTCCACCGCA 62.965 68.421 0.00 0.00 0.00 5.69
726 733 1.063649 TTCGCGCCTCGTCTCATAC 59.936 57.895 0.00 0.00 39.67 2.39
731 738 0.589223 CGCCTCGTCTCATACTCTCC 59.411 60.000 0.00 0.00 0.00 3.71
778 785 0.539438 AGGCCTAGAGCTCAGATCGG 60.539 60.000 17.77 9.22 43.05 4.18
803 824 1.454111 CAGTCGTCGGATCTCCCCT 60.454 63.158 0.00 0.00 0.00 4.79
812 833 1.202782 CGGATCTCCCCTCTCGAGTTA 60.203 57.143 13.13 0.00 0.00 2.24
824 845 0.472352 TCGAGTTACTGGGTGGGGTT 60.472 55.000 0.00 0.00 0.00 4.11
828 849 0.775542 GTTACTGGGTGGGGTTTCCT 59.224 55.000 0.00 0.00 36.20 3.36
835 856 3.332385 TGGGGTTTCCTACGGGCC 61.332 66.667 0.00 0.00 36.20 5.80
869 890 0.247419 GCGTGAGTCACATTGCATCG 60.247 55.000 22.66 7.54 33.40 3.84
874 895 1.137404 GTCACATTGCATCGGTGGC 59.863 57.895 0.00 7.26 33.45 5.01
897 918 1.311059 GAATTGGATGCCCCTGGGT 59.689 57.895 12.71 0.00 37.65 4.51
901 922 3.866582 GGATGCCCCTGGGTCTCG 61.867 72.222 12.71 0.00 37.65 4.04
911 933 1.070134 CCTGGGTCTCGACTTTTGACA 59.930 52.381 4.41 0.00 32.84 3.58
915 937 2.546778 GGTCTCGACTTTTGACACACA 58.453 47.619 4.41 0.00 32.84 3.72
930 953 6.070897 TGACACACAACGAATGAATCAATT 57.929 33.333 0.00 0.00 0.00 2.32
938 961 7.118101 CACAACGAATGAATCAATTCCCAAATT 59.882 33.333 0.00 0.00 35.97 1.82
974 997 2.744377 GGCGGGAGGATAAGGAGC 59.256 66.667 0.00 0.00 0.00 4.70
1394 1417 8.768501 AATTTCTATCCTGGGAAGGTAAATTC 57.231 34.615 0.00 0.00 0.00 2.17
1401 1424 4.705023 CCTGGGAAGGTAAATTCGAACAAT 59.295 41.667 0.00 0.00 0.00 2.71
1405 1428 5.867174 GGGAAGGTAAATTCGAACAATTTGG 59.133 40.000 0.00 0.00 32.64 3.28
1429 1452 8.147058 TGGCAAAATATGTTGTTATGTCTTGTT 58.853 29.630 7.46 0.00 0.00 2.83
1468 1491 7.698506 ATCCCTTGAATATATGTGCATCTTG 57.301 36.000 0.00 0.00 0.00 3.02
1632 1655 8.357402 GTGGAACTAAAATGTTGTAGAATGGTT 58.643 33.333 0.00 0.00 0.00 3.67
1662 1700 1.207089 TCCTTGTTGGATACTGAGGCG 59.793 52.381 0.00 0.00 40.56 5.52
1663 1701 1.066143 CCTTGTTGGATACTGAGGCGT 60.066 52.381 0.00 0.00 38.35 5.68
1664 1702 2.615493 CCTTGTTGGATACTGAGGCGTT 60.615 50.000 0.00 0.00 38.35 4.84
1665 1703 2.093306 TGTTGGATACTGAGGCGTTG 57.907 50.000 0.00 0.00 37.61 4.10
1666 1704 1.338674 TGTTGGATACTGAGGCGTTGG 60.339 52.381 0.00 0.00 37.61 3.77
1667 1705 1.066430 GTTGGATACTGAGGCGTTGGA 60.066 52.381 0.00 0.00 37.61 3.53
1733 1771 4.056050 CGTTTATGTATCCAGTACCTGCC 58.944 47.826 0.00 0.00 32.03 4.85
1798 1839 9.823647 ATAATGTTATCAGTAGAGAACTTGTGG 57.176 33.333 4.86 0.00 44.29 4.17
1807 1848 5.834204 AGTAGAGAACTTGTGGTAGTTGAGT 59.166 40.000 0.00 0.00 38.43 3.41
1841 1882 6.039616 GCAGAAACTGAGAAGTACTGGATAG 58.960 44.000 0.00 0.00 32.44 2.08
1863 1904 5.139001 AGTACTCCCTCCGTTCCTAAATAG 58.861 45.833 0.00 0.00 0.00 1.73
1864 1905 3.991683 ACTCCCTCCGTTCCTAAATAGT 58.008 45.455 0.00 0.00 0.00 2.12
1865 1906 5.134725 ACTCCCTCCGTTCCTAAATAGTA 57.865 43.478 0.00 0.00 0.00 1.82
1888 1929 9.620259 AGTATAAGCCTTTTTAGAGATTCCAAG 57.380 33.333 0.00 0.00 0.00 3.61
1890 1931 6.825944 AAGCCTTTTTAGAGATTCCAAGAC 57.174 37.500 0.00 0.00 0.00 3.01
1923 1964 4.872691 ACGGAGCAAAATGAGTGAATCTAG 59.127 41.667 0.00 0.00 0.00 2.43
1989 2030 7.149569 TGATTGAAATCTCTAAAGTGGCTTG 57.850 36.000 4.76 0.00 36.39 4.01
2041 2249 6.575244 TGTATTCACCCCTTTGATGATACT 57.425 37.500 0.00 0.00 0.00 2.12
2042 2250 6.591935 TGTATTCACCCCTTTGATGATACTC 58.408 40.000 0.00 0.00 0.00 2.59
2043 2251 4.503714 TTCACCCCTTTGATGATACTCC 57.496 45.455 0.00 0.00 0.00 3.85
2044 2252 2.777692 TCACCCCTTTGATGATACTCCC 59.222 50.000 0.00 0.00 0.00 4.30
2045 2253 2.780010 CACCCCTTTGATGATACTCCCT 59.220 50.000 0.00 0.00 0.00 4.20
2046 2254 3.049344 ACCCCTTTGATGATACTCCCTC 58.951 50.000 0.00 0.00 0.00 4.30
2047 2255 2.373502 CCCCTTTGATGATACTCCCTCC 59.626 54.545 0.00 0.00 0.00 4.30
2048 2256 2.037772 CCCTTTGATGATACTCCCTCCG 59.962 54.545 0.00 0.00 0.00 4.63
2049 2257 2.700897 CCTTTGATGATACTCCCTCCGT 59.299 50.000 0.00 0.00 0.00 4.69
2050 2258 3.134804 CCTTTGATGATACTCCCTCCGTT 59.865 47.826 0.00 0.00 0.00 4.44
2051 2259 4.372656 CTTTGATGATACTCCCTCCGTTC 58.627 47.826 0.00 0.00 0.00 3.95
2052 2260 2.317040 TGATGATACTCCCTCCGTTCC 58.683 52.381 0.00 0.00 0.00 3.62
2053 2261 1.269998 GATGATACTCCCTCCGTTCCG 59.730 57.143 0.00 0.00 0.00 4.30
2054 2262 0.256752 TGATACTCCCTCCGTTCCGA 59.743 55.000 0.00 0.00 0.00 4.55
2055 2263 1.341285 TGATACTCCCTCCGTTCCGAA 60.341 52.381 0.00 0.00 0.00 4.30
2056 2264 1.962100 GATACTCCCTCCGTTCCGAAT 59.038 52.381 0.00 0.00 0.00 3.34
2057 2265 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
2058 2266 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2059 2267 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2060 2268 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2061 2269 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2062 2270 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2063 2271 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2064 2272 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2065 2273 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
2066 2274 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2067 2275 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2068 2276 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
2069 2277 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
2070 2278 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
2071 2279 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
2072 2280 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
2073 2281 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
2074 2282 3.544682 CGAATTACTTGTCGCACGTATGA 59.455 43.478 0.00 0.00 0.00 2.15
2075 2283 4.030865 CGAATTACTTGTCGCACGTATGAA 59.969 41.667 0.00 0.00 0.00 2.57
2076 2284 5.276207 CGAATTACTTGTCGCACGTATGAAT 60.276 40.000 0.00 0.00 0.00 2.57
2077 2285 4.833469 TTACTTGTCGCACGTATGAATG 57.167 40.909 0.00 0.00 0.00 2.67
2078 2286 2.683968 ACTTGTCGCACGTATGAATGT 58.316 42.857 0.00 0.00 0.00 2.71
2079 2287 3.840468 ACTTGTCGCACGTATGAATGTA 58.160 40.909 0.00 0.00 0.00 2.29
2080 2288 4.430007 ACTTGTCGCACGTATGAATGTAT 58.570 39.130 0.00 0.00 0.00 2.29
2081 2289 4.503007 ACTTGTCGCACGTATGAATGTATC 59.497 41.667 0.00 0.00 0.00 2.24
2082 2290 4.301637 TGTCGCACGTATGAATGTATCT 57.698 40.909 0.00 0.00 0.00 1.98
2083 2291 5.427036 TGTCGCACGTATGAATGTATCTA 57.573 39.130 0.00 0.00 0.00 1.98
2084 2292 5.449304 TGTCGCACGTATGAATGTATCTAG 58.551 41.667 0.00 0.00 0.00 2.43
2085 2293 5.237779 TGTCGCACGTATGAATGTATCTAGA 59.762 40.000 0.00 0.00 0.00 2.43
2086 2294 6.072673 TGTCGCACGTATGAATGTATCTAGAT 60.073 38.462 10.73 10.73 0.00 1.98
2087 2295 6.249471 GTCGCACGTATGAATGTATCTAGATG 59.751 42.308 15.79 0.00 0.00 2.90
2088 2296 6.072673 TCGCACGTATGAATGTATCTAGATGT 60.073 38.462 15.79 0.00 0.00 3.06
2089 2297 7.118680 TCGCACGTATGAATGTATCTAGATGTA 59.881 37.037 15.79 4.44 0.00 2.29
2090 2298 7.910683 CGCACGTATGAATGTATCTAGATGTAT 59.089 37.037 15.79 6.61 0.00 2.29
2091 2299 9.574458 GCACGTATGAATGTATCTAGATGTATT 57.426 33.333 15.79 14.21 0.00 1.89
2117 2325 9.547753 TTTAGTTCTAGATACATCCATTTCAGC 57.452 33.333 0.00 0.00 0.00 4.26
2118 2326 6.219473 AGTTCTAGATACATCCATTTCAGCG 58.781 40.000 0.00 0.00 0.00 5.18
2119 2327 6.040955 AGTTCTAGATACATCCATTTCAGCGA 59.959 38.462 0.00 0.00 0.00 4.93
2120 2328 5.773575 TCTAGATACATCCATTTCAGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2121 2329 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2122 2330 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2123 2331 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2124 2332 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2125 2333 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2126 2334 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2127 2335 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2128 2336 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2129 2337 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2130 2338 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2131 2339 4.334443 CATTTCAGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2132 2340 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2133 2341 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2134 2342 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2135 2343 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
2136 2344 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
2137 2345 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2138 2346 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2139 2347 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2140 2348 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2141 2349 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2142 2350 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2143 2351 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2144 2352 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2145 2353 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
2149 2357 1.272816 TGGAACGGAGGGAGTACATGA 60.273 52.381 0.00 0.00 0.00 3.07
2201 2409 3.055458 GGGAGAGGGAAGCTATCTAATGC 60.055 52.174 0.00 0.00 0.00 3.56
2208 2416 5.012561 AGGGAAGCTATCTAATGCCTTAGTG 59.987 44.000 8.39 2.93 36.51 2.74
2210 2418 4.278975 AGCTATCTAATGCCTTAGTGCC 57.721 45.455 8.39 0.00 36.51 5.01
2212 2420 4.349342 AGCTATCTAATGCCTTAGTGCCTT 59.651 41.667 8.39 0.00 36.51 4.35
2213 2421 5.066593 GCTATCTAATGCCTTAGTGCCTTT 58.933 41.667 8.39 0.00 36.51 3.11
2214 2422 6.043243 AGCTATCTAATGCCTTAGTGCCTTTA 59.957 38.462 8.39 0.00 36.51 1.85
2215 2423 6.147985 GCTATCTAATGCCTTAGTGCCTTTAC 59.852 42.308 8.39 0.00 36.51 2.01
2216 2424 5.429681 TCTAATGCCTTAGTGCCTTTACA 57.570 39.130 8.39 0.00 36.51 2.41
2222 2435 3.802685 GCCTTAGTGCCTTTACATCTACG 59.197 47.826 0.00 0.00 0.00 3.51
2232 2445 2.596904 TACATCTACGAAAGGGCAGC 57.403 50.000 0.00 0.00 0.00 5.25
2233 2446 0.613260 ACATCTACGAAAGGGCAGCA 59.387 50.000 0.00 0.00 0.00 4.41
2234 2447 1.210478 ACATCTACGAAAGGGCAGCAT 59.790 47.619 0.00 0.00 0.00 3.79
2235 2448 2.434336 ACATCTACGAAAGGGCAGCATA 59.566 45.455 0.00 0.00 0.00 3.14
2236 2449 3.118408 ACATCTACGAAAGGGCAGCATAA 60.118 43.478 0.00 0.00 0.00 1.90
2237 2450 3.620427 TCTACGAAAGGGCAGCATAAA 57.380 42.857 0.00 0.00 0.00 1.40
2238 2451 3.531538 TCTACGAAAGGGCAGCATAAAG 58.468 45.455 0.00 0.00 0.00 1.85
2239 2452 0.811281 ACGAAAGGGCAGCATAAAGC 59.189 50.000 0.00 0.00 46.19 3.51
2257 2470 7.280652 GCATAAAGCCATAAATTGATTTGGTGT 59.719 33.333 0.00 0.00 37.23 4.16
2295 2508 0.179092 TCTGATCGCATGGCAGACTG 60.179 55.000 0.00 0.00 34.02 3.51
2296 2509 1.773054 CTGATCGCATGGCAGACTGC 61.773 60.000 19.55 19.55 44.08 4.40
2359 2572 5.162637 AGCATTCTACCTGTTGGGGATATA 58.837 41.667 0.00 0.00 40.03 0.86
2362 2575 6.465894 GCATTCTACCTGTTGGGGATATAACT 60.466 42.308 0.00 0.00 40.03 2.24
2458 2671 4.442332 GGACGGAGGTGGAAAAACAAATTT 60.442 41.667 0.00 0.00 0.00 1.82
2478 2691 8.846607 CAAATTTCGTAAAGTTATAGGTGTTGC 58.153 33.333 0.00 0.00 0.00 4.17
2500 2713 5.130975 TGCTCACACCAACTATCTGGAATAT 59.869 40.000 0.00 0.00 38.96 1.28
2521 2734 4.453480 TGTGAAGAGGGAGAAAAATGGT 57.547 40.909 0.00 0.00 0.00 3.55
2530 2743 7.184862 AGAGGGAGAAAAATGGTTACATTCAT 58.815 34.615 0.00 0.00 46.25 2.57
2575 2788 2.747177 TCTTGGGTCACCGACATCTAT 58.253 47.619 0.00 0.00 40.75 1.98
2624 2837 9.996554 TTTTCTATTCTGTTTACTGTCATCTCA 57.003 29.630 0.00 0.00 0.00 3.27
2697 2911 4.232091 ACCTCCTAGTTTTCCAGTCTCAA 58.768 43.478 0.00 0.00 0.00 3.02
2698 2912 4.284746 ACCTCCTAGTTTTCCAGTCTCAAG 59.715 45.833 0.00 0.00 0.00 3.02
2700 2914 5.012148 CCTCCTAGTTTTCCAGTCTCAAGAA 59.988 44.000 0.00 0.00 0.00 2.52
2712 2926 6.155910 TCCAGTCTCAAGAAGCTGAATATCTT 59.844 38.462 0.00 0.00 33.52 2.40
2714 2928 7.201626 CCAGTCTCAAGAAGCTGAATATCTTTG 60.202 40.741 0.00 0.00 33.52 2.77
2719 2933 9.545105 CTCAAGAAGCTGAATATCTTTGTAGAT 57.455 33.333 0.00 0.00 43.51 1.98
2762 2976 5.761003 TGCCAATTTAACATCGATAGCATG 58.239 37.500 0.00 0.00 0.00 4.06
2763 2977 5.299028 TGCCAATTTAACATCGATAGCATGT 59.701 36.000 0.00 0.00 38.08 3.21
2772 2986 9.936759 TTAACATCGATAGCATGTATGGAATTA 57.063 29.630 0.00 0.81 36.37 1.40
2860 3074 1.202989 TGCCCCACTTGTTATCTGCAA 60.203 47.619 0.00 0.00 0.00 4.08
2872 3086 5.694816 TGTTATCTGCAACGTAAACCATTG 58.305 37.500 0.00 0.00 0.00 2.82
2877 3091 1.269309 GCAACGTAAACCATTGTGGCA 60.269 47.619 0.00 0.00 42.67 4.92
2878 3092 2.799917 GCAACGTAAACCATTGTGGCAA 60.800 45.455 0.00 0.00 42.67 4.52
2919 3133 9.831737 GCTGTAATGTATTCATGAATGGTAATC 57.168 33.333 27.59 15.19 34.19 1.75
2932 3146 9.622004 CATGAATGGTAATCTTTTCATATCTGC 57.378 33.333 0.00 0.00 0.00 4.26
2966 3181 4.811498 ACCATCATCCATCCATGATTTGT 58.189 39.130 0.00 0.00 40.86 2.83
2995 3210 5.382618 AACATGTGCTCCATTTTCTCTTC 57.617 39.130 0.00 0.00 0.00 2.87
3000 3215 4.758674 TGTGCTCCATTTTCTCTTCTTGAG 59.241 41.667 0.00 0.00 43.96 3.02
3008 3223 8.331740 TCCATTTTCTCTTCTTGAGGACAATAT 58.668 33.333 0.00 0.00 42.86 1.28
3009 3224 9.618890 CCATTTTCTCTTCTTGAGGACAATATA 57.381 33.333 0.00 0.00 42.86 0.86
3063 3287 2.969628 TTGTTGCCCGTGATGTTTTT 57.030 40.000 0.00 0.00 0.00 1.94
3116 3340 4.100189 CAGGAAGTCCCGAGATCTGTAATT 59.900 45.833 0.00 0.00 40.87 1.40
3191 3415 6.827251 AGCATCAGCAAATATCTCAAAGAGAA 59.173 34.615 0.29 0.00 42.09 2.87
3224 3448 7.754624 TCTTCAAGGGTGCATATTATATTGGA 58.245 34.615 0.00 0.00 0.00 3.53
3260 3484 0.689623 AAGGCTACACAGAGCTGCTT 59.310 50.000 2.53 0.00 42.43 3.91
3263 3487 1.357907 GCTACACAGAGCTGCTTCAG 58.642 55.000 2.53 0.00 39.50 3.02
3288 3512 4.861102 CTTCAGAAGCACCAAAAGGAAT 57.139 40.909 0.00 0.00 0.00 3.01
3311 3535 1.829849 TCTGGTCTCAAGATGGAGCTG 59.170 52.381 0.00 0.00 34.84 4.24
3332 3556 2.725221 ATGGCAGTGGAGAAGATTCC 57.275 50.000 0.00 0.00 37.77 3.01
3389 3613 2.293955 GGACGTTAGAGTCTATCCTGGC 59.706 54.545 10.04 0.00 40.76 4.85
3433 3657 0.524392 CACGAGTGAGATCCTGCGTC 60.524 60.000 0.00 0.00 0.00 5.19
3436 3660 1.135257 CGAGTGAGATCCTGCGTCTTT 60.135 52.381 0.00 0.00 0.00 2.52
3455 3679 8.221766 GCGTCTTTCCTATTCCTTAATTTATCG 58.778 37.037 0.00 0.00 0.00 2.92
3466 3690 5.640357 TCCTTAATTTATCGTTTCGTGTGCT 59.360 36.000 0.00 0.00 0.00 4.40
3469 3693 2.442212 TTATCGTTTCGTGTGCTCCA 57.558 45.000 0.00 0.00 0.00 3.86
3486 3711 2.912025 AAAGGGCCACACAAGCGG 60.912 61.111 6.18 0.00 0.00 5.52
3515 3740 4.386711 TGCTAGTGCTAGTTCGAGCTATA 58.613 43.478 9.58 0.00 43.27 1.31
3522 3747 7.713750 AGTGCTAGTTCGAGCTATACATTTTA 58.286 34.615 18.92 0.00 43.27 1.52
3529 3754 7.769044 AGTTCGAGCTATACATTTTACCACAAT 59.231 33.333 0.00 0.00 0.00 2.71
3533 3758 7.467267 CGAGCTATACATTTTACCACAATTGCT 60.467 37.037 5.05 0.00 0.00 3.91
3545 3770 5.957798 ACCACAATTGCTTTATGTCATCAG 58.042 37.500 5.05 0.00 0.00 2.90
3757 3982 2.802816 CACGGAGAAAGAGTTTGTGAGG 59.197 50.000 0.00 0.00 0.00 3.86
3787 4012 0.320247 AAGCACTGTCAGAAGAGCCG 60.320 55.000 6.91 0.00 34.68 5.52
3799 4024 1.617947 AAGAGCCGATCCCACTGACC 61.618 60.000 0.00 0.00 0.00 4.02
4015 4240 2.415426 GCCCGTTGTGTGTTTGGG 59.585 61.111 0.00 0.00 43.02 4.12
4199 4424 3.607775 CGGAAACATGTGTGCTCTGAAAG 60.608 47.826 5.94 0.00 0.00 2.62
4269 4843 1.402787 ACTGCAGTTTTCCTTGGTGG 58.597 50.000 15.25 0.00 37.10 4.61
4628 5205 5.221601 TGGCAATGCTCCATTAAACAAGAAA 60.222 36.000 4.82 0.00 32.35 2.52
4631 5208 7.094677 GGCAATGCTCCATTAAACAAGAAATTT 60.095 33.333 4.82 0.00 32.35 1.82
4743 5321 6.635755 ACTTTACTAGGAGATGCAAGAGAAC 58.364 40.000 0.00 0.00 0.00 3.01
4766 5344 1.856259 TGGGGGCATATTAAAGAGGCA 59.144 47.619 0.66 0.00 0.00 4.75
4820 5398 8.203485 AGAGATGAGATAAAATGGACTCTCAAC 58.797 37.037 5.32 3.42 45.13 3.18
4846 5424 9.503399 CAAAAAGGGAGTCTATACTGTTAAGTT 57.497 33.333 0.00 0.00 37.88 2.66
4874 5452 2.504367 AGACACCTGATTGAAAACGGG 58.496 47.619 0.00 0.00 38.40 5.28
5059 5639 6.815142 ACATAAATCATCTTTTTCTGGCTTGC 59.185 34.615 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.222389 TGATGCCATCCAACAACTTTAAAAG 58.778 36.000 1.49 0.00 0.00 2.27
1 2 6.166984 TGATGCCATCCAACAACTTTAAAA 57.833 33.333 1.49 0.00 0.00 1.52
2 3 5.798125 TGATGCCATCCAACAACTTTAAA 57.202 34.783 1.49 0.00 0.00 1.52
3 4 5.999205 ATGATGCCATCCAACAACTTTAA 57.001 34.783 1.49 0.00 29.54 1.52
4 5 5.593909 CCTATGATGCCATCCAACAACTTTA 59.406 40.000 1.49 0.00 34.31 1.85
6 7 3.956199 CCTATGATGCCATCCAACAACTT 59.044 43.478 1.49 0.00 34.31 2.66
7 8 3.559069 CCTATGATGCCATCCAACAACT 58.441 45.455 1.49 0.00 34.31 3.16
8 9 2.035066 GCCTATGATGCCATCCAACAAC 59.965 50.000 1.49 0.00 34.31 3.32
9 10 2.091720 AGCCTATGATGCCATCCAACAA 60.092 45.455 1.49 0.00 34.31 2.83
10 11 1.496001 AGCCTATGATGCCATCCAACA 59.504 47.619 1.49 0.00 34.31 3.33
11 12 2.283145 AGCCTATGATGCCATCCAAC 57.717 50.000 1.49 0.00 34.31 3.77
12 13 3.317455 AAAGCCTATGATGCCATCCAA 57.683 42.857 1.49 0.00 34.31 3.53
13 14 3.317455 AAAAGCCTATGATGCCATCCA 57.683 42.857 1.49 0.00 34.31 3.41
60 61 9.227777 GCCCTACAATCTTACTAAAGAAAAAGA 57.772 33.333 0.00 0.00 44.75 2.52
61 62 8.459635 GGCCCTACAATCTTACTAAAGAAAAAG 58.540 37.037 0.00 0.00 44.75 2.27
62 63 7.395206 GGGCCCTACAATCTTACTAAAGAAAAA 59.605 37.037 17.04 0.00 44.75 1.94
63 64 6.888088 GGGCCCTACAATCTTACTAAAGAAAA 59.112 38.462 17.04 0.00 44.75 2.29
64 65 6.012333 TGGGCCCTACAATCTTACTAAAGAAA 60.012 38.462 25.70 0.00 44.75 2.52
65 66 5.489637 TGGGCCCTACAATCTTACTAAAGAA 59.510 40.000 25.70 0.00 44.75 2.52
66 67 5.034200 TGGGCCCTACAATCTTACTAAAGA 58.966 41.667 25.70 0.00 45.63 2.52
67 68 5.367945 TGGGCCCTACAATCTTACTAAAG 57.632 43.478 25.70 0.00 0.00 1.85
68 69 5.782677 TTGGGCCCTACAATCTTACTAAA 57.217 39.130 25.70 0.00 0.00 1.85
69 70 5.987019 ATTGGGCCCTACAATCTTACTAA 57.013 39.130 25.70 3.75 33.51 2.24
70 71 8.181524 TCTATATTGGGCCCTACAATCTTACTA 58.818 37.037 25.70 1.20 39.18 1.82
71 72 7.023120 TCTATATTGGGCCCTACAATCTTACT 58.977 38.462 25.70 0.00 39.18 2.24
72 73 7.180408 TCTCTATATTGGGCCCTACAATCTTAC 59.820 40.741 25.70 0.00 39.18 2.34
73 74 7.253421 TCTCTATATTGGGCCCTACAATCTTA 58.747 38.462 25.70 3.64 39.18 2.10
74 75 6.091555 TCTCTATATTGGGCCCTACAATCTT 58.908 40.000 25.70 8.42 39.18 2.40
75 76 5.665701 TCTCTATATTGGGCCCTACAATCT 58.334 41.667 25.70 9.77 39.18 2.40
76 77 6.374417 TTCTCTATATTGGGCCCTACAATC 57.626 41.667 25.70 0.00 39.18 2.67
77 78 5.251700 CCTTCTCTATATTGGGCCCTACAAT 59.748 44.000 25.70 17.08 41.17 2.71
78 79 4.597507 CCTTCTCTATATTGGGCCCTACAA 59.402 45.833 25.70 9.83 0.00 2.41
79 80 4.168101 CCTTCTCTATATTGGGCCCTACA 58.832 47.826 25.70 4.43 0.00 2.74
80 81 3.055021 GCCTTCTCTATATTGGGCCCTAC 60.055 52.174 25.70 0.00 34.19 3.18
81 82 3.182152 GCCTTCTCTATATTGGGCCCTA 58.818 50.000 25.70 17.71 34.19 3.53
82 83 1.988846 GCCTTCTCTATATTGGGCCCT 59.011 52.381 25.70 5.93 34.19 5.19
83 84 2.498644 GCCTTCTCTATATTGGGCCC 57.501 55.000 17.59 17.59 34.19 5.80
85 86 2.373502 ACAGGCCTTCTCTATATTGGGC 59.626 50.000 0.00 0.00 42.68 5.36
86 87 4.223923 CCTACAGGCCTTCTCTATATTGGG 59.776 50.000 0.00 0.00 0.00 4.12
87 88 4.223923 CCCTACAGGCCTTCTCTATATTGG 59.776 50.000 0.00 0.00 0.00 3.16
88 89 5.413309 CCCTACAGGCCTTCTCTATATTG 57.587 47.826 0.00 0.00 0.00 1.90
102 103 0.243907 CATCGTATCGGCCCTACAGG 59.756 60.000 0.00 0.00 39.47 4.00
103 104 0.243907 CCATCGTATCGGCCCTACAG 59.756 60.000 0.00 0.00 0.00 2.74
104 105 0.178984 TCCATCGTATCGGCCCTACA 60.179 55.000 0.00 0.00 0.00 2.74
105 106 1.135083 CATCCATCGTATCGGCCCTAC 60.135 57.143 0.00 0.00 0.00 3.18
106 107 1.182667 CATCCATCGTATCGGCCCTA 58.817 55.000 0.00 0.00 0.00 3.53
107 108 0.832135 ACATCCATCGTATCGGCCCT 60.832 55.000 0.00 0.00 0.00 5.19
108 109 0.034896 AACATCCATCGTATCGGCCC 59.965 55.000 0.00 0.00 0.00 5.80
109 110 1.429463 GAACATCCATCGTATCGGCC 58.571 55.000 0.00 0.00 0.00 6.13
110 111 1.060713 CGAACATCCATCGTATCGGC 58.939 55.000 0.00 0.00 35.64 5.54
111 112 1.668919 CCCGAACATCCATCGTATCGG 60.669 57.143 5.10 5.10 46.96 4.18
112 113 1.668919 CCCCGAACATCCATCGTATCG 60.669 57.143 0.00 0.00 38.60 2.92
113 114 1.343465 ACCCCGAACATCCATCGTATC 59.657 52.381 0.00 0.00 38.60 2.24
114 115 1.070134 CACCCCGAACATCCATCGTAT 59.930 52.381 0.00 0.00 38.60 3.06
115 116 0.462375 CACCCCGAACATCCATCGTA 59.538 55.000 0.00 0.00 38.60 3.43
116 117 1.220749 CACCCCGAACATCCATCGT 59.779 57.895 0.00 0.00 38.60 3.73
117 118 1.523711 CCACCCCGAACATCCATCG 60.524 63.158 0.00 0.00 39.92 3.84
118 119 0.748005 CACCACCCCGAACATCCATC 60.748 60.000 0.00 0.00 0.00 3.51
119 120 1.302949 CACCACCCCGAACATCCAT 59.697 57.895 0.00 0.00 0.00 3.41
120 121 2.753701 CACCACCCCGAACATCCA 59.246 61.111 0.00 0.00 0.00 3.41
121 122 2.045340 CCACCACCCCGAACATCC 60.045 66.667 0.00 0.00 0.00 3.51
122 123 2.750237 GCCACCACCCCGAACATC 60.750 66.667 0.00 0.00 0.00 3.06
123 124 3.567579 CTGCCACCACCCCGAACAT 62.568 63.158 0.00 0.00 0.00 2.71
124 125 4.263572 CTGCCACCACCCCGAACA 62.264 66.667 0.00 0.00 0.00 3.18
139 140 2.827190 ATGCAGTGGCGATGGCTG 60.827 61.111 0.00 0.00 45.35 4.85
140 141 2.825075 TTCATGCAGTGGCGATGGCT 62.825 55.000 0.00 0.00 45.35 4.75
141 142 1.936436 TTTCATGCAGTGGCGATGGC 61.936 55.000 0.00 0.00 45.35 4.40
142 143 0.742505 ATTTCATGCAGTGGCGATGG 59.257 50.000 0.00 0.00 45.35 3.51
143 144 1.596220 CGATTTCATGCAGTGGCGATG 60.596 52.381 0.00 0.00 45.35 3.84
144 145 0.659427 CGATTTCATGCAGTGGCGAT 59.341 50.000 0.00 0.00 45.35 4.58
145 146 0.673333 ACGATTTCATGCAGTGGCGA 60.673 50.000 0.00 0.00 45.35 5.54
146 147 0.521867 CACGATTTCATGCAGTGGCG 60.522 55.000 0.00 0.00 45.35 5.69
147 148 0.799534 GCACGATTTCATGCAGTGGC 60.800 55.000 0.00 0.00 41.65 5.01
148 149 0.522626 TGCACGATTTCATGCAGTGG 59.477 50.000 0.00 0.00 46.63 4.00
153 154 1.584483 CGCCTGCACGATTTCATGC 60.584 57.895 0.00 0.00 42.40 4.06
154 155 1.063006 CCGCCTGCACGATTTCATG 59.937 57.895 0.00 0.00 34.06 3.07
155 156 2.114670 CCCGCCTGCACGATTTCAT 61.115 57.895 0.00 0.00 34.06 2.57
156 157 2.745884 CCCGCCTGCACGATTTCA 60.746 61.111 0.00 0.00 34.06 2.69
157 158 3.508840 CCCCGCCTGCACGATTTC 61.509 66.667 0.00 0.00 34.06 2.17
158 159 3.976701 CTCCCCGCCTGCACGATTT 62.977 63.158 0.00 0.00 34.06 2.17
159 160 4.473520 CTCCCCGCCTGCACGATT 62.474 66.667 0.00 0.00 34.06 3.34
166 167 4.292178 GATCGCTCTCCCCGCCTG 62.292 72.222 0.00 0.00 0.00 4.85
169 170 4.632458 GACGATCGCTCTCCCCGC 62.632 72.222 16.60 0.00 0.00 6.13
170 171 3.967335 GGACGATCGCTCTCCCCG 61.967 72.222 16.60 0.00 0.00 5.73
171 172 3.607661 GGGACGATCGCTCTCCCC 61.608 72.222 24.92 18.46 34.91 4.81
172 173 2.356818 CTTGGGACGATCGCTCTCCC 62.357 65.000 27.31 27.31 38.42 4.30
173 174 1.066587 CTTGGGACGATCGCTCTCC 59.933 63.158 16.60 14.74 0.00 3.71
174 175 1.590259 GCTTGGGACGATCGCTCTC 60.590 63.158 16.60 12.42 0.00 3.20
175 176 1.888436 TTGCTTGGGACGATCGCTCT 61.888 55.000 16.60 0.00 0.00 4.09
176 177 0.811616 ATTGCTTGGGACGATCGCTC 60.812 55.000 16.60 11.76 0.00 5.03
177 178 0.392998 AATTGCTTGGGACGATCGCT 60.393 50.000 16.60 2.00 0.00 4.93
178 179 0.451783 AAATTGCTTGGGACGATCGC 59.548 50.000 16.60 8.04 0.00 4.58
179 180 1.468520 ACAAATTGCTTGGGACGATCG 59.531 47.619 14.88 14.88 39.56 3.69
180 181 3.501950 GAACAAATTGCTTGGGACGATC 58.498 45.455 0.00 0.00 39.56 3.69
181 182 2.095263 CGAACAAATTGCTTGGGACGAT 60.095 45.455 0.00 0.00 39.56 3.73
182 183 1.265635 CGAACAAATTGCTTGGGACGA 59.734 47.619 0.00 0.00 39.56 4.20
183 184 1.665735 CCGAACAAATTGCTTGGGACG 60.666 52.381 0.00 0.00 39.56 4.79
184 185 1.339929 ACCGAACAAATTGCTTGGGAC 59.660 47.619 7.50 0.00 39.56 4.46
185 186 1.611491 GACCGAACAAATTGCTTGGGA 59.389 47.619 7.50 0.00 39.56 4.37
186 187 1.336795 GGACCGAACAAATTGCTTGGG 60.337 52.381 7.50 7.45 39.56 4.12
187 188 1.339610 TGGACCGAACAAATTGCTTGG 59.660 47.619 1.25 1.25 39.56 3.61
188 189 2.664916 CTGGACCGAACAAATTGCTTG 58.335 47.619 0.00 0.00 41.19 4.01
189 190 1.000274 GCTGGACCGAACAAATTGCTT 60.000 47.619 0.00 0.00 0.00 3.91
190 191 0.598065 GCTGGACCGAACAAATTGCT 59.402 50.000 0.00 0.00 0.00 3.91
191 192 0.598065 AGCTGGACCGAACAAATTGC 59.402 50.000 0.00 0.00 0.00 3.56
192 193 1.666888 GCAGCTGGACCGAACAAATTG 60.667 52.381 17.12 0.00 0.00 2.32
193 194 0.598065 GCAGCTGGACCGAACAAATT 59.402 50.000 17.12 0.00 0.00 1.82
194 195 1.244019 GGCAGCTGGACCGAACAAAT 61.244 55.000 17.12 0.00 0.00 2.32
195 196 1.896660 GGCAGCTGGACCGAACAAA 60.897 57.895 17.12 0.00 0.00 2.83
196 197 2.281484 GGCAGCTGGACCGAACAA 60.281 61.111 17.12 0.00 0.00 2.83
197 198 2.337879 AAAGGCAGCTGGACCGAACA 62.338 55.000 17.12 0.00 0.00 3.18
198 199 1.578206 GAAAGGCAGCTGGACCGAAC 61.578 60.000 17.12 0.00 0.00 3.95
199 200 1.302511 GAAAGGCAGCTGGACCGAA 60.303 57.895 17.12 0.00 0.00 4.30
200 201 2.347490 GAAAGGCAGCTGGACCGA 59.653 61.111 17.12 0.00 0.00 4.69
201 202 2.747855 GGAAAGGCAGCTGGACCG 60.748 66.667 17.12 0.00 0.00 4.79
202 203 1.676967 CAGGAAAGGCAGCTGGACC 60.677 63.158 17.12 9.20 0.00 4.46
203 204 0.957888 GACAGGAAAGGCAGCTGGAC 60.958 60.000 17.12 0.00 0.00 4.02
204 205 1.376466 GACAGGAAAGGCAGCTGGA 59.624 57.895 17.12 0.00 0.00 3.86
205 206 1.073722 TGACAGGAAAGGCAGCTGG 59.926 57.895 17.12 0.00 0.00 4.85
206 207 0.535780 TGTGACAGGAAAGGCAGCTG 60.536 55.000 10.11 10.11 0.00 4.24
207 208 0.536006 GTGTGACAGGAAAGGCAGCT 60.536 55.000 0.00 0.00 0.00 4.24
208 209 1.845809 CGTGTGACAGGAAAGGCAGC 61.846 60.000 0.00 0.00 0.00 5.25
209 210 0.532862 ACGTGTGACAGGAAAGGCAG 60.533 55.000 12.67 0.00 0.00 4.85
210 211 0.813610 CACGTGTGACAGGAAAGGCA 60.814 55.000 12.67 0.00 0.00 4.75
211 212 0.814010 ACACGTGTGACAGGAAAGGC 60.814 55.000 22.71 0.00 0.00 4.35
212 213 3.379650 ACACGTGTGACAGGAAAGG 57.620 52.632 22.71 1.51 0.00 3.11
222 223 1.355210 GAAACTGCCCACACGTGTG 59.645 57.895 36.13 36.13 45.23 3.82
223 224 0.678366 TTGAAACTGCCCACACGTGT 60.678 50.000 17.22 17.22 0.00 4.49
224 225 0.667993 ATTGAAACTGCCCACACGTG 59.332 50.000 15.48 15.48 0.00 4.49
225 226 0.667993 CATTGAAACTGCCCACACGT 59.332 50.000 0.00 0.00 0.00 4.49
226 227 0.667993 ACATTGAAACTGCCCACACG 59.332 50.000 0.00 0.00 0.00 4.49
227 228 2.742774 GAACATTGAAACTGCCCACAC 58.257 47.619 0.00 0.00 0.00 3.82
228 229 1.336440 CGAACATTGAAACTGCCCACA 59.664 47.619 0.00 0.00 0.00 4.17
229 230 1.930371 GCGAACATTGAAACTGCCCAC 60.930 52.381 0.00 0.00 0.00 4.61
230 231 0.313672 GCGAACATTGAAACTGCCCA 59.686 50.000 0.00 0.00 0.00 5.36
231 232 0.388520 GGCGAACATTGAAACTGCCC 60.389 55.000 0.00 0.00 35.01 5.36
232 233 0.388520 GGGCGAACATTGAAACTGCC 60.389 55.000 0.00 0.00 40.25 4.85
233 234 0.313672 TGGGCGAACATTGAAACTGC 59.686 50.000 0.00 0.00 0.00 4.40
234 235 1.336440 TGTGGGCGAACATTGAAACTG 59.664 47.619 0.00 0.00 0.00 3.16
235 236 1.336755 GTGTGGGCGAACATTGAAACT 59.663 47.619 0.00 0.00 31.49 2.66
236 237 1.066303 TGTGTGGGCGAACATTGAAAC 59.934 47.619 0.00 0.00 31.49 2.78
237 238 1.393603 TGTGTGGGCGAACATTGAAA 58.606 45.000 0.00 0.00 31.49 2.69
238 239 1.066303 GTTGTGTGGGCGAACATTGAA 59.934 47.619 0.00 0.00 31.49 2.69
239 240 0.665835 GTTGTGTGGGCGAACATTGA 59.334 50.000 0.00 0.00 31.49 2.57
240 241 0.660005 CGTTGTGTGGGCGAACATTG 60.660 55.000 0.00 0.00 31.49 2.82
241 242 1.098712 ACGTTGTGTGGGCGAACATT 61.099 50.000 0.00 0.00 31.49 2.71
242 243 1.503818 GACGTTGTGTGGGCGAACAT 61.504 55.000 0.00 0.00 31.49 2.71
243 244 2.125065 ACGTTGTGTGGGCGAACA 60.125 55.556 0.00 0.00 0.00 3.18
244 245 2.629763 GACGTTGTGTGGGCGAAC 59.370 61.111 0.00 0.00 0.00 3.95
245 246 2.962786 CGACGTTGTGTGGGCGAA 60.963 61.111 0.00 0.00 0.00 4.70
246 247 4.210093 ACGACGTTGTGTGGGCGA 62.210 61.111 7.89 0.00 0.00 5.54
247 248 3.995669 CACGACGTTGTGTGGGCG 61.996 66.667 25.09 7.59 35.12 6.13
253 254 2.587753 AGCCCACACGACGTTGTG 60.588 61.111 30.17 30.17 45.57 3.33
254 255 2.587753 CAGCCCACACGACGTTGT 60.588 61.111 1.48 1.48 0.00 3.32
255 256 4.012895 GCAGCCCACACGACGTTG 62.013 66.667 0.00 0.00 0.00 4.10
256 257 3.825160 ATGCAGCCCACACGACGTT 62.825 57.895 0.00 0.00 0.00 3.99
257 258 4.314440 ATGCAGCCCACACGACGT 62.314 61.111 0.00 0.00 0.00 4.34
258 259 3.792047 CATGCAGCCCACACGACG 61.792 66.667 0.00 0.00 0.00 5.12
259 260 4.107051 GCATGCAGCCCACACGAC 62.107 66.667 14.21 0.00 37.23 4.34
262 263 4.409218 CACGCATGCAGCCCACAC 62.409 66.667 19.57 0.00 41.38 3.82
263 264 2.818291 ATACACGCATGCAGCCCACA 62.818 55.000 19.57 0.00 41.38 4.17
264 265 2.114670 ATACACGCATGCAGCCCAC 61.115 57.895 19.57 0.00 41.38 4.61
265 266 2.114051 CATACACGCATGCAGCCCA 61.114 57.895 19.57 0.00 41.38 5.36
266 267 2.717485 CATACACGCATGCAGCCC 59.283 61.111 19.57 0.00 41.38 5.19
278 279 2.745884 GGCGCTGTGTGGCATACA 60.746 61.111 16.43 16.43 38.50 2.29
279 280 2.745884 TGGCGCTGTGTGGCATAC 60.746 61.111 7.64 7.51 43.35 2.39
283 284 4.409218 CACATGGCGCTGTGTGGC 62.409 66.667 26.92 4.50 41.46 5.01
285 286 2.969806 GACCACATGGCGCTGTGTG 61.970 63.158 27.36 27.36 44.04 3.82
286 287 2.669569 GACCACATGGCGCTGTGT 60.670 61.111 23.30 17.77 44.04 3.72
287 288 3.792047 CGACCACATGGCGCTGTG 61.792 66.667 19.75 19.75 44.92 3.66
289 290 4.758251 TCCGACCACATGGCGCTG 62.758 66.667 7.64 0.00 39.32 5.18
290 291 3.785859 ATCCGACCACATGGCGCT 61.786 61.111 7.64 0.00 39.32 5.92
291 292 3.576356 CATCCGACCACATGGCGC 61.576 66.667 0.00 0.00 39.32 6.53
292 293 2.896854 CCATCCGACCACATGGCG 60.897 66.667 0.00 2.94 39.32 5.69
293 294 1.819632 GACCATCCGACCACATGGC 60.820 63.158 0.00 0.00 43.16 4.40
294 295 0.181114 ATGACCATCCGACCACATGG 59.819 55.000 0.00 0.00 44.68 3.66
295 296 1.672363 CAATGACCATCCGACCACATG 59.328 52.381 0.00 0.00 0.00 3.21
296 297 1.281867 ACAATGACCATCCGACCACAT 59.718 47.619 0.00 0.00 0.00 3.21
297 298 0.690192 ACAATGACCATCCGACCACA 59.310 50.000 0.00 0.00 0.00 4.17
298 299 1.086696 CACAATGACCATCCGACCAC 58.913 55.000 0.00 0.00 0.00 4.16
299 300 0.676466 GCACAATGACCATCCGACCA 60.676 55.000 0.00 0.00 0.00 4.02
300 301 1.376609 GGCACAATGACCATCCGACC 61.377 60.000 0.00 0.00 0.00 4.79
301 302 0.676466 TGGCACAATGACCATCCGAC 60.676 55.000 0.00 0.00 31.92 4.79
302 303 0.676466 GTGGCACAATGACCATCCGA 60.676 55.000 13.86 0.00 44.16 4.55
303 304 0.959867 TGTGGCACAATGACCATCCG 60.960 55.000 19.74 0.00 44.16 4.18
304 305 0.527565 GTGTGGCACAATGACCATCC 59.472 55.000 23.90 2.29 44.16 3.51
305 306 0.168788 CGTGTGGCACAATGACCATC 59.831 55.000 23.90 6.20 44.16 3.51
306 307 0.537143 ACGTGTGGCACAATGACCAT 60.537 50.000 23.90 0.00 44.16 3.55
307 308 1.153066 ACGTGTGGCACAATGACCA 60.153 52.632 23.90 0.00 44.16 4.02
308 309 1.282570 CACGTGTGGCACAATGACC 59.717 57.895 23.90 8.57 44.16 4.02
309 310 0.316937 CACACGTGTGGCACAATGAC 60.317 55.000 35.65 15.76 44.16 3.06
310 311 2.020926 CACACGTGTGGCACAATGA 58.979 52.632 35.65 5.77 44.16 2.57
311 312 4.612757 CACACGTGTGGCACAATG 57.387 55.556 35.65 24.09 44.16 2.82
319 320 0.438445 CGATAAGTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
320 321 0.669318 CCGATAAGTGCCACACGTGT 60.669 55.000 17.22 17.22 39.64 4.49
321 322 1.966493 GCCGATAAGTGCCACACGTG 61.966 60.000 15.48 15.48 39.64 4.49
322 323 1.740296 GCCGATAAGTGCCACACGT 60.740 57.895 0.00 0.00 39.64 4.49
323 324 2.798501 CGCCGATAAGTGCCACACG 61.799 63.158 0.00 0.00 39.64 4.49
324 325 1.693083 GACGCCGATAAGTGCCACAC 61.693 60.000 0.00 0.00 34.10 3.82
325 326 1.447140 GACGCCGATAAGTGCCACA 60.447 57.895 0.00 0.00 0.00 4.17
326 327 2.171725 GGACGCCGATAAGTGCCAC 61.172 63.158 0.00 0.00 0.00 5.01
327 328 2.173758 TTGGACGCCGATAAGTGCCA 62.174 55.000 0.00 0.00 0.00 4.92
328 329 1.022451 TTTGGACGCCGATAAGTGCC 61.022 55.000 0.00 0.00 0.00 5.01
329 330 0.800012 TTTTGGACGCCGATAAGTGC 59.200 50.000 0.00 0.00 0.00 4.40
350 351 6.590234 AACCTTGTTCACTGAAACTCTTTT 57.410 33.333 0.00 0.00 0.00 2.27
468 469 2.467826 GGATTCTCAGTGCAGCCGC 61.468 63.158 0.00 0.00 39.24 6.53
469 470 2.169789 CGGATTCTCAGTGCAGCCG 61.170 63.158 0.00 0.00 0.00 5.52
470 471 1.817099 CCGGATTCTCAGTGCAGCC 60.817 63.158 0.00 0.00 0.00 4.85
471 472 1.086634 GTCCGGATTCTCAGTGCAGC 61.087 60.000 7.81 0.00 0.00 5.25
472 473 0.460987 GGTCCGGATTCTCAGTGCAG 60.461 60.000 7.81 0.00 0.00 4.41
473 474 1.596934 GGTCCGGATTCTCAGTGCA 59.403 57.895 7.81 0.00 0.00 4.57
474 475 1.153349 GGGTCCGGATTCTCAGTGC 60.153 63.158 7.81 0.00 0.00 4.40
538 539 1.594293 CGACACCGCTGTTCCTGTT 60.594 57.895 0.00 0.00 0.00 3.16
625 632 4.397832 GGTTGGGGCGAGCGGTTA 62.398 66.667 0.00 0.00 0.00 2.85
670 677 0.397957 GGAGGAGGAGGAGGAGGAAC 60.398 65.000 0.00 0.00 0.00 3.62
687 694 1.001393 GAGGGGAATTTGCGGTGGA 60.001 57.895 0.00 0.00 0.00 4.02
690 697 2.045340 CGGAGGGGAATTTGCGGT 60.045 61.111 0.00 0.00 0.00 5.68
692 699 1.800681 GAACGGAGGGGAATTTGCG 59.199 57.895 0.00 0.00 0.00 4.85
693 700 1.800681 CGAACGGAGGGGAATTTGC 59.199 57.895 0.00 0.00 0.00 3.68
694 701 1.800681 GCGAACGGAGGGGAATTTG 59.199 57.895 0.00 0.00 0.00 2.32
695 702 1.743995 CGCGAACGGAGGGGAATTT 60.744 57.895 0.00 0.00 34.97 1.82
726 733 2.413765 GCGAGCCCTAACGGAGAG 59.586 66.667 0.00 0.00 0.00 3.20
731 738 2.125512 AAGCTGCGAGCCCTAACG 60.126 61.111 4.77 0.00 43.77 3.18
803 824 0.613853 CCCCACCCAGTAACTCGAGA 60.614 60.000 21.68 0.00 0.00 4.04
812 833 1.486145 CGTAGGAAACCCCACCCAGT 61.486 60.000 0.00 0.00 37.41 4.00
828 849 3.733344 GAAGCTCGCATGGCCCGTA 62.733 63.158 0.00 0.00 0.00 4.02
835 856 3.570638 CGCAGGGAAGCTCGCATG 61.571 66.667 0.00 0.00 0.00 4.06
847 868 1.229975 TGCAATGTGACTCACGCAGG 61.230 55.000 4.71 0.00 42.42 4.85
874 895 3.595758 GGGCATCCAATTCGGCGG 61.596 66.667 7.21 0.00 33.14 6.13
897 918 2.601314 CGTTGTGTGTCAAAAGTCGAGA 59.399 45.455 0.00 0.00 37.81 4.04
901 922 4.904116 TCATTCGTTGTGTGTCAAAAGTC 58.096 39.130 0.00 0.00 37.81 3.01
911 933 4.522405 TGGGAATTGATTCATTCGTTGTGT 59.478 37.500 6.11 0.00 38.53 3.72
915 937 7.385267 TGAATTTGGGAATTGATTCATTCGTT 58.615 30.769 6.11 0.00 38.53 3.85
938 961 1.006998 CCCACTCCATTTCCCCATTGA 59.993 52.381 0.00 0.00 0.00 2.57
974 997 1.813513 AACAGCAGAATCCAGTTCCG 58.186 50.000 0.00 0.00 37.56 4.30
1209 1232 2.203938 GTGACCTCCCAGTCCCCA 60.204 66.667 0.00 0.00 35.83 4.96
1394 1417 6.886307 ACAACATATTTTGCCAAATTGTTCG 58.114 32.000 14.83 13.38 34.67 3.95
1401 1424 8.986847 CAAGACATAACAACATATTTTGCCAAA 58.013 29.630 1.43 0.00 0.00 3.28
1465 1488 4.836125 ATCAAGCACTAAACCACACAAG 57.164 40.909 0.00 0.00 0.00 3.16
1468 1491 6.554334 TTTCTATCAAGCACTAAACCACAC 57.446 37.500 0.00 0.00 0.00 3.82
1632 1655 2.123589 TCCAACAAGGACACAGGAGAA 58.876 47.619 0.00 0.00 43.07 2.87
1653 1691 3.745799 TGAAATTTCCAACGCCTCAGTA 58.254 40.909 15.48 0.00 0.00 2.74
1654 1692 2.582052 TGAAATTTCCAACGCCTCAGT 58.418 42.857 15.48 0.00 0.00 3.41
1655 1693 3.004734 AGTTGAAATTTCCAACGCCTCAG 59.995 43.478 15.48 0.00 46.10 3.35
1656 1694 2.955660 AGTTGAAATTTCCAACGCCTCA 59.044 40.909 15.48 0.00 46.10 3.86
1657 1695 3.643159 AGTTGAAATTTCCAACGCCTC 57.357 42.857 15.48 0.00 46.10 4.70
1658 1696 4.583073 ACTTAGTTGAAATTTCCAACGCCT 59.417 37.500 15.48 7.16 46.10 5.52
1659 1697 4.866921 ACTTAGTTGAAATTTCCAACGCC 58.133 39.130 15.48 0.00 46.10 5.68
1660 1698 6.084277 CCTACTTAGTTGAAATTTCCAACGC 58.916 40.000 15.48 1.85 46.10 4.84
1661 1699 7.198306 ACCTACTTAGTTGAAATTTCCAACG 57.802 36.000 15.48 9.40 46.10 4.10
1662 1700 9.281371 ACTACCTACTTAGTTGAAATTTCCAAC 57.719 33.333 15.48 17.11 42.97 3.77
1772 1813 9.823647 CCACAAGTTCTCTACTGATAACATTAT 57.176 33.333 0.00 0.00 37.12 1.28
1773 1814 8.812972 ACCACAAGTTCTCTACTGATAACATTA 58.187 33.333 0.00 0.00 37.12 1.90
1774 1815 7.680730 ACCACAAGTTCTCTACTGATAACATT 58.319 34.615 0.00 0.00 37.12 2.71
1775 1816 7.246171 ACCACAAGTTCTCTACTGATAACAT 57.754 36.000 0.00 0.00 37.12 2.71
1776 1817 6.665992 ACCACAAGTTCTCTACTGATAACA 57.334 37.500 0.00 0.00 37.12 2.41
1777 1818 7.828712 ACTACCACAAGTTCTCTACTGATAAC 58.171 38.462 0.00 0.00 37.12 1.89
1778 1819 8.304596 CAACTACCACAAGTTCTCTACTGATAA 58.695 37.037 0.00 0.00 37.61 1.75
1779 1820 7.668469 TCAACTACCACAAGTTCTCTACTGATA 59.332 37.037 0.00 0.00 37.61 2.15
1780 1821 6.493802 TCAACTACCACAAGTTCTCTACTGAT 59.506 38.462 0.00 0.00 37.61 2.90
1781 1822 5.831525 TCAACTACCACAAGTTCTCTACTGA 59.168 40.000 0.00 0.00 37.61 3.41
1782 1823 6.085555 TCAACTACCACAAGTTCTCTACTG 57.914 41.667 0.00 0.00 37.61 2.74
1783 1824 5.834204 ACTCAACTACCACAAGTTCTCTACT 59.166 40.000 0.00 0.00 37.61 2.57
1784 1825 5.921408 CACTCAACTACCACAAGTTCTCTAC 59.079 44.000 0.00 0.00 37.61 2.59
1785 1826 5.509163 GCACTCAACTACCACAAGTTCTCTA 60.509 44.000 0.00 0.00 37.61 2.43
1786 1827 4.740934 GCACTCAACTACCACAAGTTCTCT 60.741 45.833 0.00 0.00 37.61 3.10
1787 1828 3.495001 GCACTCAACTACCACAAGTTCTC 59.505 47.826 0.00 0.00 37.61 2.87
1788 1829 3.118408 TGCACTCAACTACCACAAGTTCT 60.118 43.478 0.00 0.00 37.61 3.01
1789 1830 3.202906 TGCACTCAACTACCACAAGTTC 58.797 45.455 0.00 0.00 37.61 3.01
1790 1831 3.206150 CTGCACTCAACTACCACAAGTT 58.794 45.455 0.00 0.00 40.33 2.66
1791 1832 2.485479 CCTGCACTCAACTACCACAAGT 60.485 50.000 0.00 0.00 0.00 3.16
1798 1839 1.983972 CTCGTCCTGCACTCAACTAC 58.016 55.000 0.00 0.00 0.00 2.73
1807 1848 0.601046 CAGTTTCTGCTCGTCCTGCA 60.601 55.000 0.00 0.00 38.81 4.41
1841 1882 4.892345 ACTATTTAGGAACGGAGGGAGTAC 59.108 45.833 0.00 0.00 0.00 2.73
1863 1904 9.614792 TCTTGGAATCTCTAAAAAGGCTTATAC 57.385 33.333 0.00 0.00 0.00 1.47
1864 1905 9.614792 GTCTTGGAATCTCTAAAAAGGCTTATA 57.385 33.333 0.00 0.00 0.00 0.98
1865 1906 7.281100 CGTCTTGGAATCTCTAAAAAGGCTTAT 59.719 37.037 0.00 0.00 0.00 1.73
1888 1929 1.019673 TGCTCCGTATGTAGTCCGTC 58.980 55.000 0.00 0.00 0.00 4.79
1890 1931 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
1959 2000 8.338259 CCACTTTAGAGATTTCAATCAATACGG 58.662 37.037 2.43 0.00 37.89 4.02
1960 2001 7.852945 GCCACTTTAGAGATTTCAATCAATACG 59.147 37.037 2.43 0.00 37.89 3.06
1989 2030 6.212888 TGTACTCCCTCCGTTTCTAAATAC 57.787 41.667 0.00 0.00 0.00 1.89
2048 2256 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
2049 2257 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
2050 2258 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
2051 2259 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
2052 2260 3.544682 TCATACGTGCGACAAGTAATTCG 59.455 43.478 0.00 0.00 32.82 3.34
2053 2261 5.444586 TTCATACGTGCGACAAGTAATTC 57.555 39.130 0.00 0.00 32.82 2.17
2054 2262 5.350365 ACATTCATACGTGCGACAAGTAATT 59.650 36.000 0.00 0.00 32.82 1.40
2055 2263 4.868171 ACATTCATACGTGCGACAAGTAAT 59.132 37.500 0.00 0.53 32.82 1.89
2056 2264 4.239304 ACATTCATACGTGCGACAAGTAA 58.761 39.130 0.00 0.00 32.82 2.24
2057 2265 3.840468 ACATTCATACGTGCGACAAGTA 58.160 40.909 0.00 7.72 33.49 2.24
2058 2266 2.683968 ACATTCATACGTGCGACAAGT 58.316 42.857 0.00 0.00 0.00 3.16
2059 2267 4.740205 AGATACATTCATACGTGCGACAAG 59.260 41.667 0.00 0.00 0.00 3.16
2060 2268 4.678622 AGATACATTCATACGTGCGACAA 58.321 39.130 0.00 0.00 0.00 3.18
2061 2269 4.301637 AGATACATTCATACGTGCGACA 57.698 40.909 0.00 0.00 0.00 4.35
2062 2270 5.686834 TCTAGATACATTCATACGTGCGAC 58.313 41.667 0.00 0.00 0.00 5.19
2063 2271 5.934935 TCTAGATACATTCATACGTGCGA 57.065 39.130 0.00 0.00 0.00 5.10
2064 2272 6.086871 ACATCTAGATACATTCATACGTGCG 58.913 40.000 4.54 0.00 0.00 5.34
2065 2273 9.574458 AATACATCTAGATACATTCATACGTGC 57.426 33.333 4.54 0.00 0.00 5.34
2091 2299 9.547753 GCTGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
2092 2300 7.867909 CGCTGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2093 2301 7.230712 TCGCTGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
2094 2302 6.040955 TCGCTGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
2095 2303 6.144724 GTCGCTGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 0.00 3.01
2096 2304 6.216569 GTCGCTGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 0.00 2.10
2097 2305 5.562890 CGTCGCTGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 0.00 2.43
2098 2306 4.618912 CGTCGCTGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 0.00 2.43
2099 2307 4.277423 TCGTCGCTGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 0.00 1.98
2100 2308 3.068165 TCGTCGCTGAAATGGATGTATCT 59.932 43.478 0.00 0.00 0.00 1.98
2101 2309 3.381045 TCGTCGCTGAAATGGATGTATC 58.619 45.455 0.00 0.00 0.00 2.24
2102 2310 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
2103 2311 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
2104 2312 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
2105 2313 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
2106 2314 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
2107 2315 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
2108 2316 4.334443 CAAATTACTCGTCGCTGAAATGG 58.666 43.478 0.00 0.00 0.00 3.16
2109 2317 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
2110 2318 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
2111 2319 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
2112 2320 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
2113 2321 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
2114 2322 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
2115 2323 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
2116 2324 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2117 2325 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2118 2326 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2119 2327 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2120 2328 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2121 2329 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2122 2330 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2123 2331 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2124 2332 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
2125 2333 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
2126 2334 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
2127 2335 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
2128 2336 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
2129 2337 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
2130 2338 1.481871 TCATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
2131 2339 4.931661 TTATCATGTACTCCCTCCGTTC 57.068 45.455 0.00 0.00 0.00 3.95
2132 2340 4.443034 GCTTTATCATGTACTCCCTCCGTT 60.443 45.833 0.00 0.00 0.00 4.44
2133 2341 3.069729 GCTTTATCATGTACTCCCTCCGT 59.930 47.826 0.00 0.00 0.00 4.69
2134 2342 3.069586 TGCTTTATCATGTACTCCCTCCG 59.930 47.826 0.00 0.00 0.00 4.63
2135 2343 4.101741 ACTGCTTTATCATGTACTCCCTCC 59.898 45.833 0.00 0.00 0.00 4.30
2136 2344 5.283457 ACTGCTTTATCATGTACTCCCTC 57.717 43.478 0.00 0.00 0.00 4.30
2137 2345 6.808321 TTACTGCTTTATCATGTACTCCCT 57.192 37.500 0.00 0.00 0.00 4.20
2138 2346 8.345565 CAATTTACTGCTTTATCATGTACTCCC 58.654 37.037 0.00 0.00 0.00 4.30
2139 2347 9.109393 TCAATTTACTGCTTTATCATGTACTCC 57.891 33.333 0.00 0.00 0.00 3.85
2141 2349 8.616076 GCTCAATTTACTGCTTTATCATGTACT 58.384 33.333 0.00 0.00 0.00 2.73
2142 2350 8.397906 TGCTCAATTTACTGCTTTATCATGTAC 58.602 33.333 0.00 0.00 0.00 2.90
2143 2351 8.504812 TGCTCAATTTACTGCTTTATCATGTA 57.495 30.769 0.00 0.00 0.00 2.29
2144 2352 7.395190 TGCTCAATTTACTGCTTTATCATGT 57.605 32.000 0.00 0.00 0.00 3.21
2145 2353 9.608617 CTATGCTCAATTTACTGCTTTATCATG 57.391 33.333 0.00 0.00 0.00 3.07
2201 2409 5.258456 TCGTAGATGTAAAGGCACTAAGG 57.742 43.478 0.00 0.00 38.49 2.69
2208 2416 2.612672 GCCCTTTCGTAGATGTAAAGGC 59.387 50.000 7.42 0.00 45.21 4.35
2210 2418 3.309954 GCTGCCCTTTCGTAGATGTAAAG 59.690 47.826 0.00 0.00 35.04 1.85
2212 2420 2.235155 TGCTGCCCTTTCGTAGATGTAA 59.765 45.455 0.00 0.00 35.04 2.41
2213 2421 1.828595 TGCTGCCCTTTCGTAGATGTA 59.171 47.619 0.00 0.00 35.04 2.29
2214 2422 0.613260 TGCTGCCCTTTCGTAGATGT 59.387 50.000 0.00 0.00 35.04 3.06
2215 2423 1.959042 ATGCTGCCCTTTCGTAGATG 58.041 50.000 0.00 0.00 35.04 2.90
2216 2424 3.838244 TTATGCTGCCCTTTCGTAGAT 57.162 42.857 0.00 0.00 35.04 1.98
2232 2445 8.721019 ACACCAAATCAATTTATGGCTTTATG 57.279 30.769 0.00 0.00 0.00 1.90
2233 2446 9.165035 CAACACCAAATCAATTTATGGCTTTAT 57.835 29.630 0.00 0.00 0.00 1.40
2234 2447 8.370940 TCAACACCAAATCAATTTATGGCTTTA 58.629 29.630 0.00 0.00 0.00 1.85
2235 2448 7.222872 TCAACACCAAATCAATTTATGGCTTT 58.777 30.769 0.00 0.00 0.00 3.51
2236 2449 6.767456 TCAACACCAAATCAATTTATGGCTT 58.233 32.000 0.00 0.00 0.00 4.35
2237 2450 6.357579 TCAACACCAAATCAATTTATGGCT 57.642 33.333 0.00 0.00 0.00 4.75
2238 2451 8.715191 TTATCAACACCAAATCAATTTATGGC 57.285 30.769 0.00 0.00 0.00 4.40
2295 2508 7.655328 AGAACTGCATATGAACATAGTTAGAGC 59.345 37.037 6.97 0.00 0.00 4.09
2296 2509 9.190858 GAGAACTGCATATGAACATAGTTAGAG 57.809 37.037 6.97 0.00 0.00 2.43
2332 2545 3.274288 CCCAACAGGTAGAATGCTTCTC 58.726 50.000 2.27 0.00 41.14 2.87
2359 2572 7.010923 GCTTTTTCATCAGATATCGTCTCAGTT 59.989 37.037 0.00 0.00 34.00 3.16
2362 2575 6.340522 TGCTTTTTCATCAGATATCGTCTCA 58.659 36.000 0.00 0.00 34.00 3.27
2458 2671 5.865552 GTGAGCAACACCTATAACTTTACGA 59.134 40.000 0.00 0.00 43.05 3.43
2478 2691 6.481313 CACATATTCCAGATAGTTGGTGTGAG 59.519 42.308 7.39 0.00 40.89 3.51
2500 2713 4.453480 ACCATTTTTCTCCCTCTTCACA 57.547 40.909 0.00 0.00 0.00 3.58
2575 2788 7.475137 AATAAAACTGCTAACCTTATGGCAA 57.525 32.000 0.00 0.00 36.63 4.52
2700 2914 9.842775 TGAAATCATCTACAAAGATATTCAGCT 57.157 29.630 0.00 0.00 40.65 4.24
2712 2926 7.940688 ACTATGCATCCATGAAATCATCTACAA 59.059 33.333 0.19 0.00 33.61 2.41
2714 2928 7.918536 ACTATGCATCCATGAAATCATCTAC 57.081 36.000 0.19 0.00 33.61 2.59
2772 2986 7.056006 TGTCTGAATCACTATGCAAATATGGT 58.944 34.615 0.00 0.00 0.00 3.55
2782 2996 4.940046 ACCAGCTTTGTCTGAATCACTATG 59.060 41.667 0.00 0.00 36.19 2.23
2787 3001 2.106338 TGGACCAGCTTTGTCTGAATCA 59.894 45.455 11.79 0.60 36.19 2.57
2788 3002 2.783135 TGGACCAGCTTTGTCTGAATC 58.217 47.619 11.79 0.00 36.19 2.52
2832 3046 3.017581 AAGTGGGGCAGCCCTAGG 61.018 66.667 30.52 0.06 44.66 3.02
2860 3074 2.034053 CAGTTGCCACAATGGTTTACGT 59.966 45.455 0.00 0.00 40.46 3.57
2891 3105 7.268199 ACCATTCATGAATACATTACAGCAG 57.732 36.000 20.32 4.10 34.15 4.24
2919 3133 7.912250 GTCTTGTACCAATGCAGATATGAAAAG 59.088 37.037 0.00 0.00 0.00 2.27
2945 3159 5.801531 AACAAATCATGGATGGATGATGG 57.198 39.130 0.00 0.00 41.35 3.51
2966 3181 4.804868 AATGGAGCACATGTTTGCATAA 57.195 36.364 12.59 0.00 45.62 1.90
3012 3227 8.272176 CAGAAACTGCGCATAACAAAATTAAAA 58.728 29.630 12.24 0.00 0.00 1.52
3015 3230 6.580791 GTCAGAAACTGCGCATAACAAAATTA 59.419 34.615 12.24 0.00 0.00 1.40
3017 3232 4.917415 GTCAGAAACTGCGCATAACAAAAT 59.083 37.500 12.24 0.00 0.00 1.82
3018 3233 4.286910 GTCAGAAACTGCGCATAACAAAA 58.713 39.130 12.24 0.00 0.00 2.44
3020 3235 2.225491 GGTCAGAAACTGCGCATAACAA 59.775 45.455 12.24 0.00 0.00 2.83
3021 3236 1.804151 GGTCAGAAACTGCGCATAACA 59.196 47.619 12.24 0.00 0.00 2.41
3028 3252 3.108144 CAACAAAAGGTCAGAAACTGCG 58.892 45.455 0.00 0.00 0.00 5.18
3063 3287 7.672660 TGCTCCCGATAATCTTATAACCTAGAA 59.327 37.037 0.00 0.00 0.00 2.10
3116 3340 5.413213 CGGGTTTACTCCATGAACATTACAA 59.587 40.000 0.00 0.00 0.00 2.41
3164 3388 7.338703 TCTCTTTGAGATATTTGCTGATGCTTT 59.661 33.333 0.00 0.00 35.43 3.51
3191 3415 3.499338 TGCACCCTTGAAGAATGATTGT 58.501 40.909 0.00 0.00 0.00 2.71
3224 3448 3.589288 AGCCTTTACTCCAGACCATCTTT 59.411 43.478 0.00 0.00 0.00 2.52
3288 3512 2.027745 GCTCCATCTTGAGACCAGACAA 60.028 50.000 0.00 0.00 34.11 3.18
3311 3535 3.471680 GGAATCTTCTCCACTGCCATAC 58.528 50.000 0.00 0.00 35.36 2.39
3332 3556 3.122937 GCTGATGCTTTAACTTCACCG 57.877 47.619 0.00 0.00 36.03 4.94
3364 3588 4.273969 CAGGATAGACTCTAACGTCCAGAC 59.726 50.000 6.88 0.00 34.46 3.51
3389 3613 1.368345 TTGAATCTGCATGGTCGCGG 61.368 55.000 6.13 0.00 39.79 6.46
3436 3660 9.037737 CACGAAACGATAAATTAAGGAATAGGA 57.962 33.333 0.00 0.00 0.00 2.94
3455 3679 0.310854 CCCTTTGGAGCACACGAAAC 59.689 55.000 0.00 0.00 0.00 2.78
3460 3684 2.203480 TGGCCCTTTGGAGCACAC 60.203 61.111 0.00 0.00 0.00 3.82
3466 3690 1.832167 GCTTGTGTGGCCCTTTGGA 60.832 57.895 0.00 0.00 0.00 3.53
3469 3693 2.912025 CCGCTTGTGTGGCCCTTT 60.912 61.111 0.00 0.00 37.01 3.11
3486 3711 0.382515 ACTAGCACTAGCAGCTACGC 59.617 55.000 12.13 10.11 45.49 4.42
3487 3712 2.722071 GAACTAGCACTAGCAGCTACG 58.278 52.381 12.13 10.97 45.49 3.51
3515 3740 8.147058 TGACATAAAGCAATTGTGGTAAAATGT 58.853 29.630 7.40 8.12 35.96 2.71
3522 3747 5.477984 ACTGATGACATAAAGCAATTGTGGT 59.522 36.000 7.40 0.00 34.68 4.16
3529 3754 8.579850 AGGAATAAACTGATGACATAAAGCAA 57.420 30.769 0.00 0.00 0.00 3.91
3685 3910 9.887406 CTTTTGAAAAATTCATTTGAAGGATGG 57.113 29.630 0.00 0.00 39.84 3.51
3757 3982 2.813754 TGACAGTGCTTTCATGGTTAGC 59.186 45.455 7.42 7.42 35.50 3.09
3787 4012 0.175989 GTTCCTCGGTCAGTGGGATC 59.824 60.000 0.00 0.00 34.38 3.36
3799 4024 1.153939 CTCGTGCCTCAGTTCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
4015 4240 1.883084 CAGGCTGTTCGGTATCGCC 60.883 63.158 6.28 0.00 40.99 5.54
4162 4387 6.317893 ACATGTTTCCGTTTCAGAGTTAGTTT 59.682 34.615 0.00 0.00 0.00 2.66
4166 4391 5.007234 CACACATGTTTCCGTTTCAGAGTTA 59.993 40.000 0.00 0.00 0.00 2.24
4199 4424 1.092348 GCCTGTCAAACGGTAATCCC 58.908 55.000 0.00 0.00 0.00 3.85
4269 4843 3.932545 AGATACAGATCTGATGGACGC 57.067 47.619 29.27 10.30 41.12 5.19
4333 4907 1.136336 CCGAGCGCTTCAACTTTGTAC 60.136 52.381 13.26 0.00 0.00 2.90
4335 4909 1.941812 CCGAGCGCTTCAACTTTGT 59.058 52.632 13.26 0.00 0.00 2.83
4631 5208 9.547279 TCAAAGCATAGATCATATAACCTAGGA 57.453 33.333 17.98 0.00 0.00 2.94
4706 5284 9.584008 TCTCCTAGTAAAGTTCTTCTAAACTGA 57.416 33.333 0.00 0.00 39.40 3.41
4743 5321 3.490348 CCTCTTTAATATGCCCCCACAG 58.510 50.000 0.00 0.00 0.00 3.66
4766 5344 5.559770 TCATTCAATGTCACCACACTACAT 58.440 37.500 0.00 0.00 34.48 2.29
4820 5398 9.503399 AACTTAACAGTATAGACTCCCTTTTTG 57.497 33.333 0.00 0.00 31.73 2.44
4846 5424 7.759886 CGTTTTCAATCAGGTGTCTATAGAAGA 59.240 37.037 3.40 0.00 0.00 2.87
4983 5561 0.722676 ATCTCCCTTCCACCCCTACA 59.277 55.000 0.00 0.00 0.00 2.74
5059 5639 4.693283 TCCATAACAATCTAGCAACCGAG 58.307 43.478 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.