AutoCloner

Multiple sequence alignment - TraesCS4B01G209900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G209900	chr4B	100.000	6146	0	0	1	6146	448308269	448314414	0.000000e+00	11350.0
1	TraesCS4B01G209900	chr4B	78.765	810	94	39	5403	6146	191195989	191196786	7.210000e-129	472.0
2	TraesCS4B01G209900	chr4B	94.007	267	16	0	1	267	439192932	439193198	7.420000e-109	405.0
3	TraesCS4B01G209900	chr4B	92.884	267	19	0	555	821	219306512	219306778	7.470000e-104	388.0
4	TraesCS4B01G209900	chr4B	92.720	261	15	3	338	596	494016861	494016603	2.090000e-99	374.0
5	TraesCS4B01G209900	chr4B	86.688	308	22	8	254	557	38236174	38235882	2.140000e-84	324.0
6	TraesCS4B01G209900	chr4B	81.858	226	39	2	2030	2254	448532951	448533175	8.130000e-44	189.0
7	TraesCS4B01G209900	chr4B	84.932	146	14	5	5254	5391	448345711	448345856	2.310000e-29	141.0
8	TraesCS4B01G209900	chr4B	100.000	28	0	0	1906	1933	366851380	366851353	1.100000e-02	52.8
9	TraesCS4B01G209900	chr3B	97.318	1976	45	4	2764	4737	116000222	116002191	0.000000e+00	3349.0
10	TraesCS4B01G209900	chr3B	76.804	776	104	38	5394	6115	116159389	116158636	3.500000e-97	366.0
11	TraesCS4B01G209900	chr1B	91.498	1976	161	7	2765	4737	178884349	178886320	0.000000e+00	2712.0
12	TraesCS4B01G209900	chr1B	75.569	1977	444	30	2766	4726	337929753	337931706	0.000000e+00	939.0
13	TraesCS4B01G209900	chr1B	93.633	267	16	1	556	821	555256559	555256825	1.240000e-106	398.0
14	TraesCS4B01G209900	chr1B	90.690	290	14	8	271	559	14821748	14821471	2.090000e-99	374.0
15	TraesCS4B01G209900	chr1B	92.308	52	2	2	1939	1988	640152897	640152846	8.550000e-09	73.1
16	TraesCS4B01G209900	chr1B	90.196	51	5	0	1938	1988	91558079	91558029	3.980000e-07	67.6
17	TraesCS4B01G209900	chr5B	87.097	1984	244	11	2760	4737	416553655	416555632	0.000000e+00	2235.0
18	TraesCS4B01G209900	chr5B	79.899	597	92	15	5417	5993	222454925	222455513	4.430000e-111	412.0
19	TraesCS4B01G209900	chr5B	93.916	263	12	4	338	597	676919161	676919422	1.610000e-105	394.0
20	TraesCS4B01G209900	chr5B	92.884	267	19	0	555	821	639367864	639368130	7.470000e-104	388.0
21	TraesCS4B01G209900	chr5B	80.723	498	76	13	5395	5881	652760177	652760665	2.710000e-98	370.0
22	TraesCS4B01G209900	chr5B	91.111	270	24	0	1	270	340599186	340599455	3.500000e-97	366.0
23	TraesCS4B01G209900	chr5B	89.020	255	26	2	16	270	185187776	185187524	1.290000e-81	315.0
24	TraesCS4B01G209900	chr5B	76.812	138	27	5	5259	5393	711709353	711709488	8.550000e-09	73.1
25	TraesCS4B01G209900	chr5B	90.244	41	4	0	1893	1933	252322568	252322608	3.000000e-03	54.7
26	TraesCS4B01G209900	chr1A	85.541	1978	270	11	2765	4737	35108798	35110764	0.000000e+00	2054.0
27	TraesCS4B01G209900	chr1A	78.993	814	115	30	5379	6146	27347386	27346583	7.110000e-139	505.0
28	TraesCS4B01G209900	chr1A	83.865	533	59	12	298	819	492022063	492022579	3.330000e-132	483.0
29	TraesCS4B01G209900	chr1A	89.925	268	26	1	1	268	223219886	223219620	1.640000e-90	344.0
30	TraesCS4B01G209900	chr1D	83.887	1986	294	16	2764	4737	200216627	200214656	0.000000e+00	1871.0
31	TraesCS4B01G209900	chr1D	79.056	826	103	27	5379	6146	209538452	209539265	2.560000e-138	503.0
32	TraesCS4B01G209900	chr1D	78.851	818	114	28	5379	6146	398873	399681	1.190000e-136	497.0
33	TraesCS4B01G209900	chr1D	76.641	792	98	38	5394	6111	192800669	192799891	2.110000e-94	357.0
34	TraesCS4B01G209900	chr1D	87.654	81	6	4	1918	1996	105968416	105968494	2.360000e-14	91.6
35	TraesCS4B01G209900	chr1D	95.652	46	1	1	1942	1986	59125500	59125545	8.550000e-09	73.1
36	TraesCS4B01G209900	chr1D	91.489	47	3	1	1943	1988	483472821	483472867	5.140000e-06	63.9
37	TraesCS4B01G209900	chr6A	82.523	1768	295	13	2764	4525	188416550	188414791	0.000000e+00	1541.0
38	TraesCS4B01G209900	chr6A	75.459	1145	256	23	2766	3898	49094244	49093113	9.070000e-148	534.0
39	TraesCS4B01G209900	chr6A	76.598	829	172	14	2764	3585	228530740	228529927	2.630000e-118	436.0
40	TraesCS4B01G209900	chr6A	100.000	28	0	0	1906	1933	585479872	585479845	1.100000e-02	52.8
41	TraesCS4B01G209900	chr4A	85.651	1129	146	13	2762	3883	712476566	712477685	0.000000e+00	1173.0
42	TraesCS4B01G209900	chr4A	90.045	884	69	10	1001	1873	102640118	102639243	0.000000e+00	1127.0
43	TraesCS4B01G209900	chr4A	92.655	708	30	12	2016	2701	102637612	102636905	0.000000e+00	1000.0
44	TraesCS4B01G209900	chr4A	93.945	512	26	3	4741	5248	102636677	102636167	0.000000e+00	769.0
45	TraesCS4B01G209900	chr4A	78.436	473	74	11	5403	5853	707773980	707774446	3.630000e-72	283.0
46	TraesCS4B01G209900	chr4A	80.717	223	41	2	2033	2254	102615094	102614873	8.190000e-39	172.0
47	TraesCS4B01G209900	chr4A	93.023	43	2	1	1891	1933	620470544	620470585	1.850000e-05	62.1
48	TraesCS4B01G209900	chr4D	91.647	862	31	16	1878	2707	362704280	362705132	0.000000e+00	1155.0
49	TraesCS4B01G209900	chr4D	92.702	507	29	5	1001	1507	362703239	362703737	0.000000e+00	725.0
50	TraesCS4B01G209900	chr4D	94.787	422	5	3	4735	5139	362705163	362705584	5.190000e-180	641.0
51	TraesCS4B01G209900	chr4D	94.444	378	17	3	1509	1886	362703856	362704229	4.130000e-161	579.0
52	TraesCS4B01G209900	chr4D	80.755	795	93	41	5394	6146	63935439	63934663	3.220000e-157	566.0
53	TraesCS4B01G209900	chr4D	87.963	432	36	11	4830	5253	362708611	362709034	4.280000e-136	496.0
54	TraesCS4B01G209900	chr4D	78.765	810	80	43	5416	6146	476222325	476221529	5.610000e-125	459.0
55	TraesCS4B01G209900	chr4D	77.312	692	93	36	5416	6056	501059808	501059130	3.530000e-92	350.0
56	TraesCS4B01G209900	chr4D	86.688	308	22	8	254	557	25889258	25888966	2.140000e-84	324.0
57	TraesCS4B01G209900	chr4D	80.973	226	41	2	2030	2254	362786814	362787038	1.760000e-40	178.0
58	TraesCS4B01G209900	chr3D	80.233	1457	278	8	3285	4735	537291691	537290239	0.000000e+00	1086.0
59	TraesCS4B01G209900	chr3D	80.074	808	107	37	5379	6146	528614713	528615506	9.000000e-153	551.0
60	TraesCS4B01G209900	chr3D	84.615	104	7	6	272	370	168518050	168517951	1.820000e-15	95.3
61	TraesCS4B01G209900	chr7D	76.675	1985	430	27	2765	4735	151908081	151906116	0.000000e+00	1070.0
62	TraesCS4B01G209900	chr7D	78.205	1092	216	20	2764	3844	51698225	51699305	0.000000e+00	678.0
63	TraesCS4B01G209900	chr7D	93.536	263	17	0	559	821	294049937	294050199	5.780000e-105	392.0
64	TraesCS4B01G209900	chr7D	87.291	299	19	7	266	559	624902324	624902040	2.140000e-84	324.0
65	TraesCS4B01G209900	chr7D	89.005	191	18	2	75	264	91711903	91711715	3.700000e-57	233.0
66	TraesCS4B01G209900	chr7D	78.067	269	40	16	5379	5635	599669845	599670106	1.070000e-32	152.0
67	TraesCS4B01G209900	chr7D	94.118	51	2	1	1939	1988	206567709	206567659	6.610000e-10	76.8
68	TraesCS4B01G209900	chr7D	77.778	135	20	7	5259	5384	33990196	33990063	2.380000e-09	75.0
69	TraesCS4B01G209900	chr7D	100.000	29	0	0	1905	1933	102305037	102305065	3.000000e-03	54.7
70	TraesCS4B01G209900	chr7B	76.284	1986	433	35	2760	4726	541220739	541218773	0.000000e+00	1024.0
71	TraesCS4B01G209900	chr7B	79.393	791	104	38	5394	6146	91297061	91297830	2.560000e-138	503.0
72	TraesCS4B01G209900	chr7B	93.182	44	2	1	2680	2723	741445144	741445186	5.140000e-06	63.9
73	TraesCS4B01G209900	chr2B	76.164	1976	441	24	2769	4732	461261490	461259533	0.000000e+00	1013.0
74	TraesCS4B01G209900	chr2B	80.998	621	87	16	5394	5986	310941153	310940536	1.210000e-126	464.0
75	TraesCS4B01G209900	chr2B	90.332	331	13	10	271	596	644616650	644616334	3.430000e-112	416.0
76	TraesCS4B01G209900	chr2B	94.340	265	15	0	557	821	135770188	135770452	2.060000e-109	407.0
77	TraesCS4B01G209900	chr2B	94.007	267	16	0	555	821	509164810	509164544	7.420000e-109	405.0
78	TraesCS4B01G209900	chr2B	93.893	262	16	0	560	821	509155272	509155011	4.460000e-106	396.0
79	TraesCS4B01G209900	chr2B	80.741	270	48	4	3	271	371539712	371539446	2.250000e-49	207.0
80	TraesCS4B01G209900	chr2B	91.304	46	3	1	1944	1988	601336710	601336665	1.850000e-05	62.1
81	TraesCS4B01G209900	chr2B	100.000	28	0	0	1906	1933	210261428	210261455	1.100000e-02	52.8
82	TraesCS4B01G209900	chr6B	75.480	1978	454	23	2764	4735	572390875	572388923	0.000000e+00	937.0
83	TraesCS4B01G209900	chr6B	87.915	331	21	9	271	597	705157877	705157562	7.520000e-99	372.0
84	TraesCS4B01G209900	chr5D	81.081	814	86	33	5394	6146	336454512	336453706	6.860000e-164	588.0
85	TraesCS4B01G209900	chr5D	80.510	785	97	26	5394	6138	39709255	39710023	9.000000e-153	551.0
86	TraesCS4B01G209900	chr5D	79.005	824	105	34	5379	6146	481264971	481264160	9.200000e-138	501.0
87	TraesCS4B01G209900	chr5D	78.879	767	103	32	5379	6098	106931894	106931140	1.210000e-126	464.0
88	TraesCS4B01G209900	chr5D	86.667	315	21	11	260	570	547084621	547084324	4.590000e-86	329.0
89	TraesCS4B01G209900	chr5D	77.803	446	73	18	5394	5817	388432264	388432705	1.020000e-62	252.0
90	TraesCS4B01G209900	chr5D	82.069	145	17	6	5258	5394	485764589	485764732	1.400000e-21	115.0
91	TraesCS4B01G209900	chr5D	91.304	46	4	0	2678	2723	402204471	402204426	5.140000e-06	63.9
92	TraesCS4B01G209900	chr6D	81.137	774	106	22	5394	6138	280870284	280871046	8.880000e-163	584.0
93	TraesCS4B01G209900	chr6D	80.150	801	104	29	5394	6146	293736317	293735524	1.160000e-151	547.0
94	TraesCS4B01G209900	chr6D	76.258	775	101	42	5395	6102	4069249	4068491	9.870000e-88	335.0
95	TraesCS4B01G209900	chr6D	76.063	635	132	13	2765	3396	149506726	149506109	4.630000e-81	313.0
96	TraesCS4B01G209900	chr6D	95.000	40	2	0	1939	1978	11720483	11720522	5.140000e-06	63.9
97	TraesCS4B01G209900	chr6D	100.000	31	0	0	1939	1969	6380826	6380856	2.390000e-04	58.4
98	TraesCS4B01G209900	chr3A	87.154	506	48	7	272	774	64072341	64071850	5.380000e-155	558.0
99	TraesCS4B01G209900	chr3A	80.424	802	95	38	5394	6146	445283737	445284525	6.960000e-154	555.0
100	TraesCS4B01G209900	chr3A	93.156	263	18	0	559	821	559703526	559703788	2.690000e-103	387.0
101	TraesCS4B01G209900	chr3A	88.136	59	6	1	1938	1995	156236182	156236124	1.110000e-07	69.4
102	TraesCS4B01G209900	chr3A	90.196	51	4	1	1938	1987	648098716	648098766	1.430000e-06	65.8
103	TraesCS4B01G209900	chr2D	86.186	485	50	7	271	752	158273604	158274074	5.500000e-140	508.0
104	TraesCS4B01G209900	chr2D	79.814	644	90	25	5379	5994	648421996	648421365	3.400000e-117	433.0
105	TraesCS4B01G209900	chr2D	88.043	276	30	2	5872	6146	566116327	566116600	2.140000e-84	324.0
106	TraesCS4B01G209900	chr2D	90.452	199	18	1	71	268	348614730	348614532	1.700000e-65	261.0
107	TraesCS4B01G209900	chr2D	90.000	200	17	3	71	268	186650956	186651154	7.910000e-64	255.0
108	TraesCS4B01G209900	chr2D	82.594	293	36	10	272	557	581803234	581802950	1.710000e-60	244.0
109	TraesCS4B01G209900	chr2D	90.541	74	3	2	261	331	224103535	224103607	1.820000e-15	95.3
110	TraesCS4B01G209900	chr2D	95.238	42	1	1	2692	2733	32188076	32188036	1.430000e-06	65.8
111	TraesCS4B01G209900	chr2A	80.157	635	93	20	5394	6006	752777876	752778499	1.570000e-120	444.0
112	TraesCS4B01G209900	chr2A	87.097	62	4	4	1927	1986	738718239	738718180	3.980000e-07	67.6
113	TraesCS4B01G209900	chrUn	89.606	279	29	0	361	639	300594853	300594575	7.580000e-94	355.0
114	TraesCS4B01G209900	chrUn	95.745	47	2	0	4692	4738	75673972	75673926	6.610000e-10	76.8
115	TraesCS4B01G209900	chr5A	86.716	271	34	2	1	270	663396174	663396443	3.600000e-77	300.0
116	TraesCS4B01G209900	chr5A	76.159	453	76	21	5379	5817	651765276	651764842	6.240000e-50	209.0
117	TraesCS4B01G209900	chr5A	84.058	69	9	2	5259	5326	378489618	378489551	1.430000e-06	65.8
118	TraesCS4B01G209900	chr7A	87.302	63	6	2	5259	5320	296554511	296554450	3.070000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G209900	chr4B	448308269	448314414	6145	False	11350.000000	11350	100.0000	1	6146	1	chr4B.!!$F4	6145
1	TraesCS4B01G209900	chr4B	191195989	191196786	797	False	472.000000	472	78.7650	5403	6146	1	chr4B.!!$F1	743
2	TraesCS4B01G209900	chr3B	116000222	116002191	1969	False	3349.000000	3349	97.3180	2764	4737	1	chr3B.!!$F1	1973
3	TraesCS4B01G209900	chr3B	116158636	116159389	753	True	366.000000	366	76.8040	5394	6115	1	chr3B.!!$R1	721
4	TraesCS4B01G209900	chr1B	178884349	178886320	1971	False	2712.000000	2712	91.4980	2765	4737	1	chr1B.!!$F1	1972
5	TraesCS4B01G209900	chr1B	337929753	337931706	1953	False	939.000000	939	75.5690	2766	4726	1	chr1B.!!$F2	1960
6	TraesCS4B01G209900	chr5B	416553655	416555632	1977	False	2235.000000	2235	87.0970	2760	4737	1	chr5B.!!$F4	1977
7	TraesCS4B01G209900	chr5B	222454925	222455513	588	False	412.000000	412	79.8990	5417	5993	1	chr5B.!!$F1	576
8	TraesCS4B01G209900	chr1A	35108798	35110764	1966	False	2054.000000	2054	85.5410	2765	4737	1	chr1A.!!$F1	1972
9	TraesCS4B01G209900	chr1A	27346583	27347386	803	True	505.000000	505	78.9930	5379	6146	1	chr1A.!!$R1	767
10	TraesCS4B01G209900	chr1A	492022063	492022579	516	False	483.000000	483	83.8650	298	819	1	chr1A.!!$F2	521
11	TraesCS4B01G209900	chr1D	200214656	200216627	1971	True	1871.000000	1871	83.8870	2764	4737	1	chr1D.!!$R2	1973
12	TraesCS4B01G209900	chr1D	209538452	209539265	813	False	503.000000	503	79.0560	5379	6146	1	chr1D.!!$F4	767
13	TraesCS4B01G209900	chr1D	398873	399681	808	False	497.000000	497	78.8510	5379	6146	1	chr1D.!!$F1	767
14	TraesCS4B01G209900	chr1D	192799891	192800669	778	True	357.000000	357	76.6410	5394	6111	1	chr1D.!!$R1	717
15	TraesCS4B01G209900	chr6A	188414791	188416550	1759	True	1541.000000	1541	82.5230	2764	4525	1	chr6A.!!$R2	1761
16	TraesCS4B01G209900	chr6A	49093113	49094244	1131	True	534.000000	534	75.4590	2766	3898	1	chr6A.!!$R1	1132
17	TraesCS4B01G209900	chr6A	228529927	228530740	813	True	436.000000	436	76.5980	2764	3585	1	chr6A.!!$R3	821
18	TraesCS4B01G209900	chr4A	712476566	712477685	1119	False	1173.000000	1173	85.6510	2762	3883	1	chr4A.!!$F3	1121
19	TraesCS4B01G209900	chr4A	102636167	102640118	3951	True	965.333333	1127	92.2150	1001	5248	3	chr4A.!!$R2	4247
20	TraesCS4B01G209900	chr4D	362703239	362709034	5795	False	719.200000	1155	92.3086	1001	5253	5	chr4D.!!$F2	4252
21	TraesCS4B01G209900	chr4D	63934663	63935439	776	True	566.000000	566	80.7550	5394	6146	1	chr4D.!!$R2	752
22	TraesCS4B01G209900	chr4D	476221529	476222325	796	True	459.000000	459	78.7650	5416	6146	1	chr4D.!!$R3	730
23	TraesCS4B01G209900	chr4D	501059130	501059808	678	True	350.000000	350	77.3120	5416	6056	1	chr4D.!!$R4	640
24	TraesCS4B01G209900	chr3D	537290239	537291691	1452	True	1086.000000	1086	80.2330	3285	4735	1	chr3D.!!$R2	1450
25	TraesCS4B01G209900	chr3D	528614713	528615506	793	False	551.000000	551	80.0740	5379	6146	1	chr3D.!!$F1	767
26	TraesCS4B01G209900	chr7D	151906116	151908081	1965	True	1070.000000	1070	76.6750	2765	4735	1	chr7D.!!$R3	1970
27	TraesCS4B01G209900	chr7D	51698225	51699305	1080	False	678.000000	678	78.2050	2764	3844	1	chr7D.!!$F1	1080
28	TraesCS4B01G209900	chr7B	541218773	541220739	1966	True	1024.000000	1024	76.2840	2760	4726	1	chr7B.!!$R1	1966
29	TraesCS4B01G209900	chr7B	91297061	91297830	769	False	503.000000	503	79.3930	5394	6146	1	chr7B.!!$F1	752
30	TraesCS4B01G209900	chr2B	461259533	461261490	1957	True	1013.000000	1013	76.1640	2769	4732	1	chr2B.!!$R3	1963
31	TraesCS4B01G209900	chr2B	310940536	310941153	617	True	464.000000	464	80.9980	5394	5986	1	chr2B.!!$R1	592
32	TraesCS4B01G209900	chr6B	572388923	572390875	1952	True	937.000000	937	75.4800	2764	4735	1	chr6B.!!$R1	1971
33	TraesCS4B01G209900	chr5D	336453706	336454512	806	True	588.000000	588	81.0810	5394	6146	1	chr5D.!!$R2	752
34	TraesCS4B01G209900	chr5D	39709255	39710023	768	False	551.000000	551	80.5100	5394	6138	1	chr5D.!!$F1	744
35	TraesCS4B01G209900	chr5D	481264160	481264971	811	True	501.000000	501	79.0050	5379	6146	1	chr5D.!!$R4	767
36	TraesCS4B01G209900	chr5D	106931140	106931894	754	True	464.000000	464	78.8790	5379	6098	1	chr5D.!!$R1	719
37	TraesCS4B01G209900	chr6D	280870284	280871046	762	False	584.000000	584	81.1370	5394	6138	1	chr6D.!!$F3	744
38	TraesCS4B01G209900	chr6D	293735524	293736317	793	True	547.000000	547	80.1500	5394	6146	1	chr6D.!!$R3	752
39	TraesCS4B01G209900	chr6D	4068491	4069249	758	True	335.000000	335	76.2580	5395	6102	1	chr6D.!!$R1	707
40	TraesCS4B01G209900	chr6D	149506109	149506726	617	True	313.000000	313	76.0630	2765	3396	1	chr6D.!!$R2	631
41	TraesCS4B01G209900	chr3A	445283737	445284525	788	False	555.000000	555	80.4240	5394	6146	1	chr3A.!!$F1	752
42	TraesCS4B01G209900	chr2D	648421365	648421996	631	True	433.000000	433	79.8140	5379	5994	1	chr2D.!!$R4	615
43	TraesCS4B01G209900	chr2A	752777876	752778499	623	False	444.000000	444	80.1570	5394	6006	1	chr2A.!!$F1	612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
935	947	0.026285	GACGTGGCACATATCGCAAC	59.974	55.000	19.09	0.00	44.52	4.17	F
1564	1698	0.036765	TGGTTCCTGTATGTCGGCAC	60.037	55.000	0.00	0.00	0.00	5.01	F
2390	4053	0.878523	TGAGTGGGCGAAAGACAACG	60.879	55.000	0.00	0.00	45.40	4.10	F
2735	4582	2.301577	TTTGAACGGGCAAAAACTGG	57.698	45.000	2.94	0.00	35.03	4.00	F
3327	5201	2.814183	AAGTACTCGTTCGGCCAGCG	62.814	60.000	2.24	3.59	0.00	5.18	F
4454	6340	7.186804	GTCTGCATATAAACTTACACGCAAAT	58.813	34.615	0.00	0.00	0.00	2.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2638	4306	2.028839	TGCAAGCCATGAAAAGTGATGG	60.029	45.455	0.00	0.0	41.95	3.51	R
3253	5127	2.224606	CAACATCTGTTCTGGCACTGT	58.775	47.619	0.00	0.0	35.83	3.55	R
3806	5681	0.035725	CAGCTGCCCTGTGATCAAGA	60.036	55.000	0.00	0.0	36.79	3.02	R
4454	6340	2.472029	GATCCCAGGAAGAGACCTTGA	58.528	52.381	0.00	0.0	38.32	3.02	R
5039	6928	0.806102	CGGACACGGATGATCCACAC	60.806	60.000	12.67	0.0	35.91	3.82	R
5798	11096	1.135527	CTAACCCTAACCGTCATGCGA	59.864	52.381	10.48	0.0	44.77	5.10	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	3.640761	GAGCAGAGGGAGGGAAGG	58.359	66.667	0.00	0.00	0.00	3.46
18	19	2.041928	AGCAGAGGGAGGGAAGGG	59.958	66.667	0.00	0.00	0.00	3.95
19	20	2.041265	GCAGAGGGAGGGAAGGGA	59.959	66.667	0.00	0.00	0.00	4.20
20	21	2.069430	GCAGAGGGAGGGAAGGGAG	61.069	68.421	0.00	0.00	0.00	4.30
21	22	1.706575	CAGAGGGAGGGAAGGGAGA	59.293	63.158	0.00	0.00	0.00	3.71
22	23	0.398381	CAGAGGGAGGGAAGGGAGAG	60.398	65.000	0.00	0.00	0.00	3.20
23	24	0.556380	AGAGGGAGGGAAGGGAGAGA	60.556	60.000	0.00	0.00	0.00	3.10
24	25	0.397957	GAGGGAGGGAAGGGAGAGAC	60.398	65.000	0.00	0.00	0.00	3.36
25	26	1.758906	GGGAGGGAAGGGAGAGACG	60.759	68.421	0.00	0.00	0.00	4.18
26	27	1.306970	GGAGGGAAGGGAGAGACGA	59.693	63.158	0.00	0.00	0.00	4.20
27	28	0.105913	GGAGGGAAGGGAGAGACGAT	60.106	60.000	0.00	0.00	0.00	3.73
28	29	1.036707	GAGGGAAGGGAGAGACGATG	58.963	60.000	0.00	0.00	0.00	3.84
29	30	0.397816	AGGGAAGGGAGAGACGATGG	60.398	60.000	0.00	0.00	0.00	3.51
30	31	1.403687	GGGAAGGGAGAGACGATGGG	61.404	65.000	0.00	0.00	0.00	4.00
31	32	1.403687	GGAAGGGAGAGACGATGGGG	61.404	65.000	0.00	0.00	0.00	4.96
32	33	0.397254	GAAGGGAGAGACGATGGGGA	60.397	60.000	0.00	0.00	0.00	4.81
33	34	0.397816	AAGGGAGAGACGATGGGGAG	60.398	60.000	0.00	0.00	0.00	4.30
34	35	1.834822	GGGAGAGACGATGGGGAGG	60.835	68.421	0.00	0.00	0.00	4.30
35	36	2.503382	GGAGAGACGATGGGGAGGC	61.503	68.421	0.00	0.00	0.00	4.70
36	37	2.835431	AGAGACGATGGGGAGGCG	60.835	66.667	0.00	0.00	0.00	5.52
37	38	2.833582	GAGACGATGGGGAGGCGA	60.834	66.667	0.00	0.00	0.00	5.54
38	39	2.363795	AGACGATGGGGAGGCGAA	60.364	61.111	0.00	0.00	0.00	4.70
39	40	2.202892	GACGATGGGGAGGCGAAC	60.203	66.667	0.00	0.00	0.00	3.95
40	41	3.735037	GACGATGGGGAGGCGAACC	62.735	68.421	0.00	0.00	0.00	3.62
60	61	3.557577	CTAGAGAGGAGATGCGACATG	57.442	52.381	0.00	0.00	0.00	3.21
61	62	1.039068	AGAGAGGAGATGCGACATGG	58.961	55.000	0.00	0.00	0.00	3.66
62	63	0.749649	GAGAGGAGATGCGACATGGT	59.250	55.000	0.00	0.00	0.00	3.55
63	64	1.137872	GAGAGGAGATGCGACATGGTT	59.862	52.381	0.00	0.00	0.00	3.67
64	65	1.137872	AGAGGAGATGCGACATGGTTC	59.862	52.381	0.00	0.00	0.00	3.62
65	66	0.179000	AGGAGATGCGACATGGTTCC	59.821	55.000	0.00	0.00	0.00	3.62
66	67	0.815615	GGAGATGCGACATGGTTCCC	60.816	60.000	0.00	0.00	0.00	3.97
67	68	1.153369	AGATGCGACATGGTTCCCG	60.153	57.895	0.00	0.00	0.00	5.14
68	69	2.823829	GATGCGACATGGTTCCCGC	61.824	63.158	0.00	4.80	46.82	6.13
71	72	4.444838	CGACATGGTTCCCGCGGA	62.445	66.667	30.73	10.38	0.00	5.54
72	73	2.511600	GACATGGTTCCCGCGGAG	60.512	66.667	30.73	17.53	31.21	4.63
73	74	4.096003	ACATGGTTCCCGCGGAGG	62.096	66.667	30.73	11.63	40.63	4.30
82	83	3.075005	CCGCGGAGGGAGAGGAAA	61.075	66.667	24.07	0.00	46.37	3.13
83	84	2.496817	CGCGGAGGGAGAGGAAAG	59.503	66.667	0.00	0.00	46.37	2.62
84	85	2.052690	CGCGGAGGGAGAGGAAAGA	61.053	63.158	0.00	0.00	46.37	2.52
85	86	1.819905	GCGGAGGGAGAGGAAAGAG	59.180	63.158	0.00	0.00	0.00	2.85
86	87	1.819905	CGGAGGGAGAGGAAAGAGC	59.180	63.158	0.00	0.00	0.00	4.09
87	88	1.681486	CGGAGGGAGAGGAAAGAGCC	61.681	65.000	0.00	0.00	0.00	4.70
88	89	0.618968	GGAGGGAGAGGAAAGAGCCA	60.619	60.000	0.00	0.00	0.00	4.75
89	90	0.539518	GAGGGAGAGGAAAGAGCCAC	59.460	60.000	0.00	0.00	0.00	5.01
90	91	0.912006	AGGGAGAGGAAAGAGCCACC	60.912	60.000	0.00	0.00	0.00	4.61
91	92	1.219393	GGAGAGGAAAGAGCCACCG	59.781	63.158	0.00	0.00	0.00	4.94
92	93	1.219393	GAGAGGAAAGAGCCACCGG	59.781	63.158	0.00	0.00	0.00	5.28
93	94	1.536662	AGAGGAAAGAGCCACCGGT	60.537	57.895	0.00	0.00	0.00	5.28
94	95	1.128188	AGAGGAAAGAGCCACCGGTT	61.128	55.000	2.97	0.00	0.00	4.44
95	96	0.673956	GAGGAAAGAGCCACCGGTTC	60.674	60.000	2.97	0.00	32.98	3.62
96	97	1.674651	GGAAAGAGCCACCGGTTCC	60.675	63.158	2.97	3.33	33.27	3.62
97	98	2.032071	AAAGAGCCACCGGTTCCG	59.968	61.111	2.97	4.08	33.27	4.30
98	99	4.699522	AAGAGCCACCGGTTCCGC	62.700	66.667	2.97	7.24	33.27	5.54
103	104	4.752879	CCACCGGTTCCGCGTGAT	62.753	66.667	23.61	1.22	34.80	3.06
104	105	2.740826	CACCGGTTCCGCGTGATT	60.741	61.111	19.95	0.00	34.80	2.57
105	106	2.433664	ACCGGTTCCGCGTGATTC	60.434	61.111	0.00	0.00	0.00	2.52
106	107	3.192922	CCGGTTCCGCGTGATTCC	61.193	66.667	4.92	7.21	0.00	3.01
107	108	2.125673	CGGTTCCGCGTGATTCCT	60.126	61.111	4.92	0.00	0.00	3.36
108	109	2.165301	CGGTTCCGCGTGATTCCTC	61.165	63.158	4.92	0.00	0.00	3.71
109	110	1.814169	GGTTCCGCGTGATTCCTCC	60.814	63.158	4.92	0.00	0.00	4.30
110	111	2.165301	GTTCCGCGTGATTCCTCCG	61.165	63.158	4.92	0.00	0.00	4.63
111	112	2.344981	TTCCGCGTGATTCCTCCGA	61.345	57.895	4.92	0.00	0.00	4.55
112	113	1.672854	TTCCGCGTGATTCCTCCGAT	61.673	55.000	4.92	0.00	0.00	4.18
113	114	1.227263	CCGCGTGATTCCTCCGATT	60.227	57.895	4.92	0.00	0.00	3.34
114	115	0.810031	CCGCGTGATTCCTCCGATTT	60.810	55.000	4.92	0.00	0.00	2.17
115	116	0.301687	CGCGTGATTCCTCCGATTTG	59.698	55.000	0.00	0.00	0.00	2.32
116	117	0.657840	GCGTGATTCCTCCGATTTGG	59.342	55.000	0.00	0.00	40.09	3.28
127	128	1.335810	TCCGATTTGGAGGTATCGACG	59.664	52.381	6.10	0.00	43.74	5.12
128	129	1.129326	CGATTTGGAGGTATCGACGC	58.871	55.000	0.00	0.00	44.76	5.19
129	130	1.129326	GATTTGGAGGTATCGACGCG	58.871	55.000	3.53	3.53	0.00	6.01
130	131	0.458669	ATTTGGAGGTATCGACGCGT	59.541	50.000	13.85	13.85	0.00	6.01
131	132	0.244450	TTTGGAGGTATCGACGCGTT	59.756	50.000	15.53	0.00	0.00	4.84
132	133	0.244450	TTGGAGGTATCGACGCGTTT	59.756	50.000	15.53	4.15	0.00	3.60
133	134	0.179156	TGGAGGTATCGACGCGTTTC	60.179	55.000	15.53	0.00	0.00	2.78
134	135	1.198608	GGAGGTATCGACGCGTTTCG	61.199	60.000	15.53	14.34	45.38	3.46
141	142	1.106933	TCGACGCGTTTCGAATATCG	58.893	50.000	19.05	12.10	44.86	2.92
142	143	0.156035	CGACGCGTTTCGAATATCGG	59.844	55.000	15.53	10.27	41.78	4.18
143	144	0.111835	GACGCGTTTCGAATATCGGC	60.112	55.000	15.53	10.46	40.88	5.54
144	145	1.155087	CGCGTTTCGAATATCGGCG	60.155	57.895	0.00	0.00	40.88	6.46
145	146	1.533988	CGCGTTTCGAATATCGGCGA	61.534	55.000	13.87	13.87	44.95	5.54
146	147	0.573521	GCGTTTCGAATATCGGCGAA	59.426	50.000	15.93	3.68	43.82	4.70
162	163	0.859232	CGAAATATTCGCTCGGTGGG	59.141	55.000	0.00	0.00	46.97	4.61
163	164	1.537348	CGAAATATTCGCTCGGTGGGA	60.537	52.381	0.00	0.00	46.97	4.37
164	165	3.056280	CGAAATATTCGCTCGGTGGGAA	61.056	50.000	11.18	11.18	46.97	3.97
167	168	3.296836	TTCGCTCGGTGGGAACGA	61.297	61.111	5.58	0.00	41.17	3.85
168	169	3.562779	TTCGCTCGGTGGGAACGAC	62.563	63.158	5.58	0.00	42.45	4.34
170	171	3.692406	GCTCGGTGGGAACGACCT	61.692	66.667	0.00	0.00	38.98	3.85
171	172	2.261671	CTCGGTGGGAACGACCTG	59.738	66.667	0.00	0.00	38.98	4.00
172	173	3.296709	CTCGGTGGGAACGACCTGG	62.297	68.421	0.00	0.00	38.98	4.45
173	174	3.622826	CGGTGGGAACGACCTGGT	61.623	66.667	0.00	0.00	38.98	4.00
174	175	2.833957	GGTGGGAACGACCTGGTT	59.166	61.111	0.00	0.00	38.98	3.67
175	176	1.302271	GGTGGGAACGACCTGGTTC	60.302	63.158	0.00	0.00	44.34	3.62
179	180	2.739132	GAACGACCTGGTTCCCGT	59.261	61.111	0.00	3.16	40.28	5.28
180	181	1.070275	GAACGACCTGGTTCCCGTT	59.930	57.895	20.41	20.41	46.15	4.44
181	182	1.070275	AACGACCTGGTTCCCGTTC	59.930	57.895	16.25	0.00	40.64	3.95
182	183	2.047560	CGACCTGGTTCCCGTTCC	60.048	66.667	0.00	0.00	0.00	3.62
183	184	2.874664	CGACCTGGTTCCCGTTCCA	61.875	63.158	0.00	0.00	0.00	3.53
185	186	2.359975	CCTGGTTCCCGTTCCAGC	60.360	66.667	5.77	0.00	46.83	4.85
186	187	2.750350	CTGGTTCCCGTTCCAGCT	59.250	61.111	0.00	0.00	43.45	4.24
187	188	1.550130	CCTGGTTCCCGTTCCAGCTA	61.550	60.000	5.77	0.00	46.83	3.32
188	189	0.541863	CTGGTTCCCGTTCCAGCTAT	59.458	55.000	0.00	0.00	43.45	2.97
189	190	0.251916	TGGTTCCCGTTCCAGCTATG	59.748	55.000	0.00	0.00	0.00	2.23
190	191	0.252197	GGTTCCCGTTCCAGCTATGT	59.748	55.000	0.00	0.00	0.00	2.29
191	192	1.483415	GGTTCCCGTTCCAGCTATGTA	59.517	52.381	0.00	0.00	0.00	2.29
192	193	2.547826	GTTCCCGTTCCAGCTATGTAC	58.452	52.381	0.00	0.00	0.00	2.90
193	194	1.117150	TCCCGTTCCAGCTATGTACC	58.883	55.000	0.00	0.00	0.00	3.34
194	195	0.828022	CCCGTTCCAGCTATGTACCA	59.172	55.000	0.00	0.00	0.00	3.25
195	196	1.208535	CCCGTTCCAGCTATGTACCAA	59.791	52.381	0.00	0.00	0.00	3.67
196	197	2.355310	CCCGTTCCAGCTATGTACCAAA	60.355	50.000	0.00	0.00	0.00	3.28
197	198	2.676342	CCGTTCCAGCTATGTACCAAAC	59.324	50.000	0.00	0.00	0.00	2.93
198	199	2.347452	CGTTCCAGCTATGTACCAAACG	59.653	50.000	0.00	0.00	33.36	3.60
199	200	2.018542	TCCAGCTATGTACCAAACGC	57.981	50.000	0.00	0.00	0.00	4.84
200	201	1.276705	TCCAGCTATGTACCAAACGCA	59.723	47.619	0.00	0.00	0.00	5.24
201	202	1.665679	CCAGCTATGTACCAAACGCAG	59.334	52.381	0.00	0.00	0.00	5.18
202	203	1.665679	CAGCTATGTACCAAACGCAGG	59.334	52.381	0.00	0.00	0.00	4.85
203	204	1.553248	AGCTATGTACCAAACGCAGGA	59.447	47.619	0.00	0.00	0.00	3.86
204	205	2.027561	AGCTATGTACCAAACGCAGGAA	60.028	45.455	0.00	0.00	0.00	3.36
205	206	2.095372	GCTATGTACCAAACGCAGGAAC	59.905	50.000	0.00	0.00	0.00	3.62
206	207	1.153353	ATGTACCAAACGCAGGAACG	58.847	50.000	0.00	0.00	39.50	3.95
207	208	0.104487	TGTACCAAACGCAGGAACGA	59.896	50.000	0.00	0.00	36.70	3.85
208	209	0.788391	GTACCAAACGCAGGAACGAG	59.212	55.000	0.00	0.00	36.70	4.18
209	210	0.320073	TACCAAACGCAGGAACGAGG	60.320	55.000	0.00	0.00	36.70	4.63
210	211	2.556287	CAAACGCAGGAACGAGGC	59.444	61.111	0.00	0.00	36.70	4.70
211	212	2.668550	AAACGCAGGAACGAGGCC	60.669	61.111	0.00	0.00	36.70	5.19
212	213	4.699522	AACGCAGGAACGAGGCCC	62.700	66.667	0.00	0.00	36.70	5.80
215	216	4.021925	GCAGGAACGAGGCCCAGT	62.022	66.667	0.00	0.00	0.00	4.00
216	217	2.266055	CAGGAACGAGGCCCAGTC	59.734	66.667	0.00	0.00	0.00	3.51
217	218	2.203788	AGGAACGAGGCCCAGTCA	60.204	61.111	0.00	0.00	0.00	3.41
218	219	2.047179	GGAACGAGGCCCAGTCAC	60.047	66.667	0.00	0.00	0.00	3.67
219	220	2.432628	GAACGAGGCCCAGTCACG	60.433	66.667	0.00	0.00	0.00	4.35
220	221	3.934391	GAACGAGGCCCAGTCACGG	62.934	68.421	0.00	0.00	0.00	4.94
227	228	2.032071	CCCAGTCACGGGTCCAAC	59.968	66.667	0.00	0.00	41.83	3.77
228	229	2.032071	CCAGTCACGGGTCCAACC	59.968	66.667	0.00	0.00	37.60	3.77
237	238	4.459199	GGTCCAACCCATGCCATT	57.541	55.556	0.00	0.00	30.04	3.16
238	239	2.201927	GGTCCAACCCATGCCATTC	58.798	57.895	0.00	0.00	30.04	2.67
239	240	1.329913	GGTCCAACCCATGCCATTCC	61.330	60.000	0.00	0.00	30.04	3.01
240	241	0.614415	GTCCAACCCATGCCATTCCA	60.614	55.000	0.00	0.00	0.00	3.53
241	242	0.614415	TCCAACCCATGCCATTCCAC	60.614	55.000	0.00	0.00	0.00	4.02
242	243	0.615544	CCAACCCATGCCATTCCACT	60.616	55.000	0.00	0.00	0.00	4.00
243	244	1.269012	CAACCCATGCCATTCCACTT	58.731	50.000	0.00	0.00	0.00	3.16
244	245	1.066716	CAACCCATGCCATTCCACTTG	60.067	52.381	0.00	0.00	0.00	3.16
245	246	0.615544	ACCCATGCCATTCCACTTGG	60.616	55.000	0.00	0.00	37.31	3.61
246	247	0.615544	CCCATGCCATTCCACTTGGT	60.616	55.000	0.00	0.00	36.57	3.67
247	248	0.533491	CCATGCCATTCCACTTGGTG	59.467	55.000	0.00	0.00	36.57	4.17
248	249	1.548081	CATGCCATTCCACTTGGTGA	58.452	50.000	0.00	0.00	35.23	4.02
249	250	2.104967	CATGCCATTCCACTTGGTGAT	58.895	47.619	0.00	0.00	35.23	3.06
250	251	2.307496	TGCCATTCCACTTGGTGATT	57.693	45.000	0.00	0.00	35.23	2.57
251	252	1.894466	TGCCATTCCACTTGGTGATTG	59.106	47.619	0.00	0.00	35.23	2.67
252	253	2.170166	GCCATTCCACTTGGTGATTGA	58.830	47.619	0.00	0.00	35.23	2.57
253	254	2.562298	GCCATTCCACTTGGTGATTGAA	59.438	45.455	0.00	0.00	35.23	2.69
254	255	3.006752	GCCATTCCACTTGGTGATTGAAA	59.993	43.478	0.00	0.00	35.23	2.69
255	256	4.813027	CCATTCCACTTGGTGATTGAAAG	58.187	43.478	0.00	0.00	35.23	2.62
256	257	4.240096	CATTCCACTTGGTGATTGAAAGC	58.760	43.478	0.00	0.00	35.23	3.51
257	258	2.942804	TCCACTTGGTGATTGAAAGCA	58.057	42.857	0.00	0.00	35.23	3.91
258	259	3.295093	TCCACTTGGTGATTGAAAGCAA	58.705	40.909	0.00	0.00	35.23	3.91
259	260	3.703556	TCCACTTGGTGATTGAAAGCAAA	59.296	39.130	0.00	0.00	35.23	3.68
260	261	3.803778	CCACTTGGTGATTGAAAGCAAAC	59.196	43.478	0.00	0.00	37.59	2.93
261	262	4.431809	CACTTGGTGATTGAAAGCAAACA	58.568	39.130	0.00	0.00	37.59	2.83
266	267	3.451141	TGATTGAAAGCAAACACACCC	57.549	42.857	0.00	0.00	37.59	4.61
267	268	3.030291	TGATTGAAAGCAAACACACCCT	58.970	40.909	0.00	0.00	37.59	4.34
268	269	3.450457	TGATTGAAAGCAAACACACCCTT	59.550	39.130	0.00	0.00	37.59	3.95
269	270	4.646945	TGATTGAAAGCAAACACACCCTTA	59.353	37.500	0.00	0.00	37.59	2.69
270	271	5.304101	TGATTGAAAGCAAACACACCCTTAT	59.696	36.000	0.00	0.00	37.59	1.73
271	272	6.491745	TGATTGAAAGCAAACACACCCTTATA	59.508	34.615	0.00	0.00	37.59	0.98
272	273	5.957842	TGAAAGCAAACACACCCTTATAG	57.042	39.130	0.00	0.00	0.00	1.31
273	274	5.626142	TGAAAGCAAACACACCCTTATAGA	58.374	37.500	0.00	0.00	0.00	1.98
274	275	5.472137	TGAAAGCAAACACACCCTTATAGAC	59.528	40.000	0.00	0.00	0.00	2.59
275	276	4.910458	AGCAAACACACCCTTATAGACT	57.090	40.909	0.00	0.00	0.00	3.24
276	277	6.368779	AAGCAAACACACCCTTATAGACTA	57.631	37.500	0.00	0.00	0.00	2.59
277	278	5.978814	AGCAAACACACCCTTATAGACTAG	58.021	41.667	0.00	0.00	0.00	2.57
278	279	4.571176	GCAAACACACCCTTATAGACTAGC	59.429	45.833	0.00	0.00	0.00	3.42
279	280	5.116882	CAAACACACCCTTATAGACTAGCC	58.883	45.833	0.00	0.00	0.00	3.93
280	281	3.990369	ACACACCCTTATAGACTAGCCA	58.010	45.455	0.00	0.00	0.00	4.75
281	282	3.705072	ACACACCCTTATAGACTAGCCAC	59.295	47.826	0.00	0.00	0.00	5.01
282	283	3.704566	CACACCCTTATAGACTAGCCACA	59.295	47.826	0.00	0.00	0.00	4.17
283	284	4.161565	CACACCCTTATAGACTAGCCACAA	59.838	45.833	0.00	0.00	0.00	3.33
284	285	4.969359	ACACCCTTATAGACTAGCCACAAT	59.031	41.667	0.00	0.00	0.00	2.71
285	286	5.163301	ACACCCTTATAGACTAGCCACAATG	60.163	44.000	0.00	0.00	0.00	2.82
286	287	4.348168	ACCCTTATAGACTAGCCACAATGG	59.652	45.833	0.00	0.00	41.55	3.16
287	288	4.593206	CCCTTATAGACTAGCCACAATGGA	59.407	45.833	0.00	0.00	40.96	3.41
288	289	5.279708	CCCTTATAGACTAGCCACAATGGAG	60.280	48.000	0.00	0.00	40.96	3.86
289	290	5.540337	CCTTATAGACTAGCCACAATGGAGA	59.460	44.000	0.00	0.00	40.96	3.71
290	291	6.295011	CCTTATAGACTAGCCACAATGGAGAG	60.295	46.154	0.00	0.00	40.96	3.20
291	292	2.826488	AGACTAGCCACAATGGAGAGT	58.174	47.619	0.00	0.46	40.96	3.24
292	293	3.982516	AGACTAGCCACAATGGAGAGTA	58.017	45.455	0.00	0.00	40.96	2.59
293	294	4.353777	AGACTAGCCACAATGGAGAGTAA	58.646	43.478	0.00	0.00	40.96	2.24
294	295	4.160626	AGACTAGCCACAATGGAGAGTAAC	59.839	45.833	0.00	0.00	40.96	2.50
295	296	3.838317	ACTAGCCACAATGGAGAGTAACA	59.162	43.478	0.00	0.00	40.96	2.41
296	297	4.471386	ACTAGCCACAATGGAGAGTAACAT	59.529	41.667	0.00	0.00	40.96	2.71
331	332	7.778185	ACACATATCCCTAGACTATGTTACC	57.222	40.000	8.30	0.00	34.66	2.85
334	335	7.232737	CACATATCCCTAGACTATGTTACCACA	59.767	40.741	8.30	0.00	34.66	4.17
335	336	7.232941	ACATATCCCTAGACTATGTTACCACAC	59.767	40.741	0.00	0.00	35.03	3.82
337	338	5.586877	TCCCTAGACTATGTTACCACACTT	58.413	41.667	0.00	0.00	35.03	3.16
340	341	7.287005	TCCCTAGACTATGTTACCACACTTATG	59.713	40.741	0.00	0.00	35.03	1.90
341	342	7.069578	CCCTAGACTATGTTACCACACTTATGT	59.930	40.741	0.00	0.00	40.80	2.29
345	346	9.032624	AGACTATGTTACCACACTTATGTTACT	57.967	33.333	0.00	0.00	36.72	2.24
348	349	9.525409	CTATGTTACCACACTTATGTTACTACC	57.475	37.037	0.00	0.00	36.72	3.18
349	350	6.700352	TGTTACCACACTTATGTTACTACCC	58.300	40.000	0.00	0.00	36.72	3.69
350	351	6.269538	TGTTACCACACTTATGTTACTACCCA	59.730	38.462	0.00	0.00	36.72	4.51
351	352	5.156608	ACCACACTTATGTTACTACCCAC	57.843	43.478	0.00	0.00	36.72	4.61
352	353	4.842380	ACCACACTTATGTTACTACCCACT	59.158	41.667	0.00	0.00	36.72	4.00
353	354	6.018469	ACCACACTTATGTTACTACCCACTA	58.982	40.000	0.00	0.00	36.72	2.74
354	355	6.670902	ACCACACTTATGTTACTACCCACTAT	59.329	38.462	0.00	0.00	36.72	2.12
355	356	7.181485	ACCACACTTATGTTACTACCCACTATT	59.819	37.037	0.00	0.00	36.72	1.73
356	357	7.494625	CCACACTTATGTTACTACCCACTATTG	59.505	40.741	0.00	0.00	36.72	1.90
357	358	8.255206	CACACTTATGTTACTACCCACTATTGA	58.745	37.037	0.00	0.00	36.72	2.57
358	359	8.475639	ACACTTATGTTACTACCCACTATTGAG	58.524	37.037	0.00	0.00	34.46	3.02
359	360	8.692710	CACTTATGTTACTACCCACTATTGAGA	58.307	37.037	0.00	0.00	0.00	3.27
367	368	9.925545	TTACTACCCACTATTGAGATAGTAACA	57.074	33.333	0.00	0.00	45.17	2.41
372	373	9.435570	ACCCACTATTGAGATAGTAACATAAGT	57.564	33.333	0.00	0.00	45.17	2.24
426	427	7.017551	AGGTTATAGACTCATATTGCATTGGGA	59.982	37.037	0.00	0.00	0.00	4.37
441	442	4.082300	GCATTGGGACATGTGATGTTACAA	60.082	41.667	1.15	0.00	45.03	2.41
530	531	4.670347	GAGTTGGACTCGATGTTACTACC	58.330	47.826	0.00	0.00	35.28	3.18
575	576	4.168283	AGTCTTAGGCTAGTCATAGTGGGA	59.832	45.833	0.00	0.00	0.00	4.37
585	586	5.855740	AGTCATAGTGGGAGTAACTTAGC	57.144	43.478	0.00	0.00	0.00	3.09
589	590	6.546772	GTCATAGTGGGAGTAACTTAGCTAGT	59.453	42.308	0.00	0.00	39.32	2.57
593	594	6.251471	AGTGGGAGTAACTTAGCTAGTAACA	58.749	40.000	0.00	0.00	35.54	2.41
596	597	8.351461	GTGGGAGTAACTTAGCTAGTAACATAG	58.649	40.741	0.00	0.00	35.54	2.23
609	610	2.472695	AACATAGCGCACTCCAAGAA	57.527	45.000	11.47	0.00	0.00	2.52
611	612	2.991250	ACATAGCGCACTCCAAGAAAT	58.009	42.857	11.47	0.00	0.00	2.17
612	613	2.679837	ACATAGCGCACTCCAAGAAATG	59.320	45.455	11.47	0.00	0.00	2.32
616	617	2.053627	GCGCACTCCAAGAAATGTTTG	58.946	47.619	0.30	0.00	0.00	2.93
617	618	2.543653	GCGCACTCCAAGAAATGTTTGT	60.544	45.455	0.30	0.00	0.00	2.83
622	623	7.081349	CGCACTCCAAGAAATGTTTGTTTATA	58.919	34.615	0.00	0.00	0.00	0.98
627	628	7.327214	TCCAAGAAATGTTTGTTTATATGGCC	58.673	34.615	0.00	0.00	0.00	5.36
641	642	9.634021	TGTTTATATGGCCAGTATTTAATGTGA	57.366	29.630	13.05	0.00	0.00	3.58
644	645	4.584638	TGGCCAGTATTTAATGTGAGGT	57.415	40.909	0.00	0.00	0.00	3.85
678	690	5.468746	ACATGTCACTGTAACATAACGCTTT	59.531	36.000	0.00	0.00	35.62	3.51
680	692	4.449743	TGTCACTGTAACATAACGCTTTCC	59.550	41.667	0.00	0.00	0.00	3.13
681	693	4.449743	GTCACTGTAACATAACGCTTTCCA	59.550	41.667	0.00	0.00	0.00	3.53
685	697	5.178809	ACTGTAACATAACGCTTTCCAAGAC	59.821	40.000	0.00	0.00	0.00	3.01
688	700	4.749245	ACATAACGCTTTCCAAGACAAG	57.251	40.909	0.00	0.00	0.00	3.16
698	710	5.350091	GCTTTCCAAGACAAGATGAGTCTAC	59.650	44.000	0.00	0.00	45.11	2.59
702	714	4.629200	CCAAGACAAGATGAGTCTACAAGC	59.371	45.833	0.00	0.00	45.11	4.01
703	715	5.233225	CAAGACAAGATGAGTCTACAAGCA	58.767	41.667	0.00	0.00	45.11	3.91
714	726	9.495754	GATGAGTCTACAAGCAAATAAATGAAC	57.504	33.333	0.00	0.00	0.00	3.18
715	727	7.816640	TGAGTCTACAAGCAAATAAATGAACC	58.183	34.615	0.00	0.00	0.00	3.62
716	728	7.094377	TGAGTCTACAAGCAAATAAATGAACCC	60.094	37.037	0.00	0.00	0.00	4.11
718	730	7.397192	AGTCTACAAGCAAATAAATGAACCCAT	59.603	33.333	0.00	0.00	33.66	4.00
720	732	5.733676	ACAAGCAAATAAATGAACCCATCC	58.266	37.500	0.00	0.00	31.40	3.51
726	738	6.629963	GCAAATAAATGAACCCATCCATGACA	60.630	38.462	0.00	0.00	31.40	3.58
733	745	4.968719	TGAACCCATCCATGACACTACTAT	59.031	41.667	0.00	0.00	0.00	2.12
734	746	5.070446	TGAACCCATCCATGACACTACTATC	59.930	44.000	0.00	0.00	0.00	2.08
736	748	5.158141	ACCCATCCATGACACTACTATCAT	58.842	41.667	0.00	0.00	35.93	2.45
748	760	9.394767	TGACACTACTATCATGTTATTTTGCAT	57.605	29.630	0.00	0.00	0.00	3.96
810	822	4.401837	CACTAGTCTAAGTTACTCCCCACC	59.598	50.000	0.00	0.00	0.00	4.61
811	823	2.454538	AGTCTAAGTTACTCCCCACCG	58.545	52.381	0.00	0.00	0.00	4.94
819	831	4.394712	CTCCCCACCGTGACCAGC	62.395	72.222	0.00	0.00	0.00	4.85
822	834	4.704833	CCCACCGTGACCAGCCAG	62.705	72.222	0.00	0.00	0.00	4.85
826	838	4.335647	CCGTGACCAGCCAGCCTT	62.336	66.667	0.00	0.00	0.00	4.35
827	839	2.662596	CGTGACCAGCCAGCCTTA	59.337	61.111	0.00	0.00	0.00	2.69
828	840	1.003839	CGTGACCAGCCAGCCTTAA	60.004	57.895	0.00	0.00	0.00	1.85
829	841	1.021390	CGTGACCAGCCAGCCTTAAG	61.021	60.000	0.00	0.00	0.00	1.85
830	842	0.036875	GTGACCAGCCAGCCTTAAGT	59.963	55.000	0.97	0.00	0.00	2.24
831	843	0.771127	TGACCAGCCAGCCTTAAGTT	59.229	50.000	0.97	0.00	0.00	2.66
832	844	1.144913	TGACCAGCCAGCCTTAAGTTT	59.855	47.619	0.97	0.00	0.00	2.66
833	845	1.813178	GACCAGCCAGCCTTAAGTTTC	59.187	52.381	0.97	0.00	0.00	2.78
834	846	1.177401	CCAGCCAGCCTTAAGTTTCC	58.823	55.000	0.97	0.00	0.00	3.13
835	847	1.272147	CCAGCCAGCCTTAAGTTTCCT	60.272	52.381	0.97	0.00	0.00	3.36
836	848	2.519013	CAGCCAGCCTTAAGTTTCCTT	58.481	47.619	0.97	0.00	34.56	3.36
837	849	2.489722	CAGCCAGCCTTAAGTTTCCTTC	59.510	50.000	0.97	0.00	31.89	3.46
838	850	2.376855	AGCCAGCCTTAAGTTTCCTTCT	59.623	45.455	0.97	0.00	31.89	2.85
839	851	2.750166	GCCAGCCTTAAGTTTCCTTCTC	59.250	50.000	0.97	0.00	31.89	2.87
840	852	3.348119	CCAGCCTTAAGTTTCCTTCTCC	58.652	50.000	0.97	0.00	31.89	3.71
841	853	3.009584	CCAGCCTTAAGTTTCCTTCTCCT	59.990	47.826	0.97	0.00	31.89	3.69
842	854	4.507512	CCAGCCTTAAGTTTCCTTCTCCTT	60.508	45.833	0.97	0.00	31.89	3.36
843	855	4.697828	CAGCCTTAAGTTTCCTTCTCCTTC	59.302	45.833	0.97	0.00	31.89	3.46
844	856	4.599676	AGCCTTAAGTTTCCTTCTCCTTCT	59.400	41.667	0.97	0.00	31.89	2.85
845	857	5.785940	AGCCTTAAGTTTCCTTCTCCTTCTA	59.214	40.000	0.97	0.00	31.89	2.10
846	858	6.445462	AGCCTTAAGTTTCCTTCTCCTTCTAT	59.555	38.462	0.97	0.00	31.89	1.98
847	859	6.764085	GCCTTAAGTTTCCTTCTCCTTCTATC	59.236	42.308	0.97	0.00	31.89	2.08
848	860	7.276658	CCTTAAGTTTCCTTCTCCTTCTATCC	58.723	42.308	0.97	0.00	31.89	2.59
849	861	5.346181	AAGTTTCCTTCTCCTTCTATCCG	57.654	43.478	0.00	0.00	0.00	4.18
850	862	3.707102	AGTTTCCTTCTCCTTCTATCCGG	59.293	47.826	0.00	0.00	0.00	5.14
851	863	3.682592	TTCCTTCTCCTTCTATCCGGA	57.317	47.619	6.61	6.61	0.00	5.14
852	864	3.905493	TCCTTCTCCTTCTATCCGGAT	57.095	47.619	22.95	22.95	0.00	4.18
853	865	3.501349	TCCTTCTCCTTCTATCCGGATG	58.499	50.000	27.55	16.29	0.00	3.51
854	866	2.564947	CCTTCTCCTTCTATCCGGATGG	59.435	54.545	27.55	24.29	33.46	3.51
863	875	2.504032	TCCGGATGGATTCGGCAC	59.496	61.111	0.00	0.00	45.31	5.01
864	876	2.591715	CCGGATGGATTCGGCACC	60.592	66.667	0.00	0.00	39.78	5.01
865	877	2.189257	CGGATGGATTCGGCACCA	59.811	61.111	0.00	0.00	40.57	4.17
866	878	1.889105	CGGATGGATTCGGCACCAG	60.889	63.158	0.00	0.00	39.62	4.00
867	879	1.526887	GGATGGATTCGGCACCAGA	59.473	57.895	0.00	0.00	39.62	3.86
868	880	0.109342	GGATGGATTCGGCACCAGAT	59.891	55.000	0.00	0.00	39.62	2.90
869	881	1.233019	GATGGATTCGGCACCAGATG	58.767	55.000	0.00	0.00	39.62	2.90
870	882	0.548031	ATGGATTCGGCACCAGATGT	59.452	50.000	0.00	0.00	39.62	3.06
871	883	1.199615	TGGATTCGGCACCAGATGTA	58.800	50.000	0.00	0.00	0.00	2.29
872	884	1.138859	TGGATTCGGCACCAGATGTAG	59.861	52.381	0.00	0.00	0.00	2.74
873	885	1.139058	GGATTCGGCACCAGATGTAGT	59.861	52.381	0.00	0.00	0.00	2.73
874	886	2.205074	GATTCGGCACCAGATGTAGTG	58.795	52.381	0.00	0.00	37.05	2.74
881	893	3.827008	CACCAGATGTAGTGCTACCAT	57.173	47.619	6.87	1.65	35.26	3.55
882	894	4.142609	CACCAGATGTAGTGCTACCATT	57.857	45.455	6.87	0.00	35.26	3.16
883	895	5.276461	CACCAGATGTAGTGCTACCATTA	57.724	43.478	6.87	0.00	35.26	1.90
884	896	5.050490	CACCAGATGTAGTGCTACCATTAC	58.950	45.833	6.87	0.00	35.43	1.89
885	897	4.962995	ACCAGATGTAGTGCTACCATTACT	59.037	41.667	6.87	0.00	35.76	2.24
886	898	5.069251	ACCAGATGTAGTGCTACCATTACTC	59.931	44.000	6.87	0.00	35.76	2.59
887	899	5.069119	CCAGATGTAGTGCTACCATTACTCA	59.931	44.000	6.87	0.00	35.76	3.41
888	900	6.239430	CCAGATGTAGTGCTACCATTACTCAT	60.239	42.308	6.87	0.00	35.76	2.90
889	901	7.212976	CAGATGTAGTGCTACCATTACTCATT	58.787	38.462	6.87	0.00	35.76	2.57
890	902	8.360390	CAGATGTAGTGCTACCATTACTCATTA	58.640	37.037	6.87	0.00	35.76	1.90
891	903	8.361139	AGATGTAGTGCTACCATTACTCATTAC	58.639	37.037	6.87	0.00	35.76	1.89
892	904	7.655521	TGTAGTGCTACCATTACTCATTACT	57.344	36.000	6.87	0.00	35.76	2.24
893	905	8.074613	TGTAGTGCTACCATTACTCATTACTT	57.925	34.615	6.87	0.00	35.76	2.24
894	906	7.979537	TGTAGTGCTACCATTACTCATTACTTG	59.020	37.037	6.87	0.00	35.76	3.16
895	907	6.947464	AGTGCTACCATTACTCATTACTTGT	58.053	36.000	0.00	0.00	0.00	3.16
896	908	6.818644	AGTGCTACCATTACTCATTACTTGTG	59.181	38.462	0.00	0.00	0.00	3.33
897	909	6.037172	GTGCTACCATTACTCATTACTTGTGG	59.963	42.308	0.00	0.00	0.00	4.17
898	910	5.527582	GCTACCATTACTCATTACTTGTGGG	59.472	44.000	0.00	0.00	0.00	4.61
899	911	5.772393	ACCATTACTCATTACTTGTGGGA	57.228	39.130	0.00	0.00	0.00	4.37
900	912	5.497474	ACCATTACTCATTACTTGTGGGAC	58.503	41.667	0.00	0.00	0.00	4.46
901	913	4.881850	CCATTACTCATTACTTGTGGGACC	59.118	45.833	0.00	0.00	0.00	4.46
902	914	5.496556	CATTACTCATTACTTGTGGGACCA	58.503	41.667	0.00	0.00	0.00	4.02
903	915	5.772393	TTACTCATTACTTGTGGGACCAT	57.228	39.130	0.00	0.00	0.00	3.55
904	916	3.955471	ACTCATTACTTGTGGGACCATG	58.045	45.455	0.00	0.00	0.00	3.66
905	917	2.684881	CTCATTACTTGTGGGACCATGC	59.315	50.000	0.00	0.00	0.00	4.06
906	918	1.750778	CATTACTTGTGGGACCATGCC	59.249	52.381	0.00	0.00	0.00	4.40
907	919	0.774276	TTACTTGTGGGACCATGCCA	59.226	50.000	0.00	0.00	34.62	4.92
908	920	0.774276	TACTTGTGGGACCATGCCAA	59.226	50.000	0.00	0.00	40.43	4.52
909	921	0.540365	ACTTGTGGGACCATGCCAAG	60.540	55.000	14.91	14.91	40.43	3.61
910	922	0.251297	CTTGTGGGACCATGCCAAGA	60.251	55.000	12.39	0.00	40.43	3.02
911	923	0.539438	TTGTGGGACCATGCCAAGAC	60.539	55.000	0.00	0.00	40.43	3.01
912	924	1.678970	GTGGGACCATGCCAAGACC	60.679	63.158	0.00	0.00	40.43	3.85
913	925	2.043953	GGGACCATGCCAAGACCC	60.044	66.667	0.00	0.00	0.00	4.46
914	926	2.438434	GGACCATGCCAAGACCCG	60.438	66.667	0.00	0.00	0.00	5.28
915	927	3.134127	GACCATGCCAAGACCCGC	61.134	66.667	0.00	0.00	0.00	6.13
917	929	4.776322	CCATGCCAAGACCCGCGA	62.776	66.667	8.23	0.00	0.00	5.87
918	930	3.499737	CATGCCAAGACCCGCGAC	61.500	66.667	8.23	0.00	0.00	5.19
928	940	4.805231	CCCGCGACGTGGCACATA	62.805	66.667	22.07	0.00	44.52	2.29
929	941	2.584970	CCGCGACGTGGCACATAT	60.585	61.111	22.58	1.63	44.52	1.78
930	942	2.585869	CCGCGACGTGGCACATATC	61.586	63.158	22.58	10.65	44.52	1.63
931	943	2.916556	CGCGACGTGGCACATATCG	61.917	63.158	22.58	23.72	46.56	2.92
932	944	2.920869	CGACGTGGCACATATCGC	59.079	61.111	19.09	0.00	44.52	4.58
933	945	1.876263	CGACGTGGCACATATCGCA	60.876	57.895	19.09	0.00	44.52	5.10
934	946	1.417577	CGACGTGGCACATATCGCAA	61.418	55.000	19.09	0.00	44.52	4.85
935	947	0.026285	GACGTGGCACATATCGCAAC	59.974	55.000	19.09	0.00	44.52	4.17
936	948	1.351707	CGTGGCACATATCGCAACC	59.648	57.895	19.09	0.00	44.52	3.77
937	949	1.365368	CGTGGCACATATCGCAACCA	61.365	55.000	19.09	0.00	44.52	3.67
938	950	0.098728	GTGGCACATATCGCAACCAC	59.901	55.000	13.86	0.00	44.52	4.16
939	951	1.351707	GGCACATATCGCAACCACG	59.648	57.895	0.00	0.00	0.00	4.94
940	952	1.351707	GCACATATCGCAACCACGG	59.648	57.895	0.00	0.00	0.00	4.94
941	953	1.366111	GCACATATCGCAACCACGGT	61.366	55.000	0.00	0.00	0.00	4.83
942	954	1.083489	CACATATCGCAACCACGGTT	58.917	50.000	0.00	0.00	39.13	4.44
943	955	2.272678	CACATATCGCAACCACGGTTA	58.727	47.619	0.05	0.00	36.46	2.85
944	956	2.673862	CACATATCGCAACCACGGTTAA	59.326	45.455	0.05	0.00	36.46	2.01
945	957	3.125487	CACATATCGCAACCACGGTTAAA	59.875	43.478	0.05	0.00	36.46	1.52
946	958	3.125658	ACATATCGCAACCACGGTTAAAC	59.874	43.478	0.05	0.00	36.46	2.01
947	959	1.886886	ATCGCAACCACGGTTAAACT	58.113	45.000	0.05	0.00	36.46	2.66
948	960	0.938713	TCGCAACCACGGTTAAACTG	59.061	50.000	0.05	0.00	36.46	3.16
949	961	0.658897	CGCAACCACGGTTAAACTGT	59.341	50.000	0.05	0.00	38.46	3.55
954	966	3.721466	CACGGTTAAACTGTGCGTC	57.279	52.632	0.00	0.00	46.96	5.19
955	967	0.233848	CACGGTTAAACTGTGCGTCC	59.766	55.000	0.00	0.00	46.96	4.79
956	968	0.881600	ACGGTTAAACTGTGCGTCCC	60.882	55.000	0.00	0.00	36.13	4.46
957	969	0.601841	CGGTTAAACTGTGCGTCCCT	60.602	55.000	0.00	0.00	0.00	4.20
958	970	1.337074	CGGTTAAACTGTGCGTCCCTA	60.337	52.381	0.00	0.00	0.00	3.53
959	971	2.675889	CGGTTAAACTGTGCGTCCCTAT	60.676	50.000	0.00	0.00	0.00	2.57
960	972	2.676342	GGTTAAACTGTGCGTCCCTATG	59.324	50.000	0.00	0.00	0.00	2.23
961	973	3.332034	GTTAAACTGTGCGTCCCTATGT	58.668	45.455	0.00	0.00	0.00	2.29
962	974	2.094762	AAACTGTGCGTCCCTATGTC	57.905	50.000	0.00	0.00	0.00	3.06
963	975	0.973632	AACTGTGCGTCCCTATGTCA	59.026	50.000	0.00	0.00	0.00	3.58
964	976	1.195115	ACTGTGCGTCCCTATGTCAT	58.805	50.000	0.00	0.00	0.00	3.06
965	977	1.134699	ACTGTGCGTCCCTATGTCATG	60.135	52.381	0.00	0.00	0.00	3.07
966	978	0.461870	TGTGCGTCCCTATGTCATGC	60.462	55.000	0.00	0.00	0.00	4.06
967	979	0.179073	GTGCGTCCCTATGTCATGCT	60.179	55.000	0.00	0.00	0.00	3.79
968	980	0.541392	TGCGTCCCTATGTCATGCTT	59.459	50.000	0.00	0.00	0.00	3.91
969	981	0.940126	GCGTCCCTATGTCATGCTTG	59.060	55.000	0.00	0.00	0.00	4.01
970	982	0.940126	CGTCCCTATGTCATGCTTGC	59.060	55.000	0.00	0.00	0.00	4.01
971	983	1.743431	CGTCCCTATGTCATGCTTGCA	60.743	52.381	0.00	0.00	0.00	4.08
972	984	1.945394	GTCCCTATGTCATGCTTGCAG	59.055	52.381	0.87	0.00	0.00	4.41
973	985	1.839354	TCCCTATGTCATGCTTGCAGA	59.161	47.619	0.87	0.00	0.00	4.26
974	986	2.158856	TCCCTATGTCATGCTTGCAGAG	60.159	50.000	0.87	9.90	0.00	3.35
984	996	3.140576	CTTGCAGAGCTCAGTCCTG	57.859	57.895	17.77	5.99	0.00	3.86
987	999	4.915298	CAGAGCTCAGTCCTGCAG	57.085	61.111	17.77	6.78	0.00	4.41
988	1000	1.973760	CAGAGCTCAGTCCTGCAGT	59.026	57.895	17.77	0.00	0.00	4.40
989	1001	1.180907	CAGAGCTCAGTCCTGCAGTA	58.819	55.000	17.77	0.00	0.00	2.74
990	1002	1.134753	CAGAGCTCAGTCCTGCAGTAG	59.865	57.143	17.77	0.00	0.00	2.57
991	1003	1.181786	GAGCTCAGTCCTGCAGTAGT	58.818	55.000	13.81	0.00	0.00	2.73
992	1004	0.894141	AGCTCAGTCCTGCAGTAGTG	59.106	55.000	13.81	10.60	0.00	2.74
1013	1025	1.566018	AAAAGGTGCAGTACGAGCGC	61.566	55.000	15.62	15.62	41.56	5.92
1033	1045	2.747855	CTGTTTCAGCCCGGCTCC	60.748	66.667	9.68	0.00	36.40	4.70
1143	1158	3.337889	CGCGGCATCGGGTATGTG	61.338	66.667	0.00	0.00	43.13	3.21
1182	1197	3.585862	CTTTCTTTTCCGATCTCGTCCA	58.414	45.455	0.00	0.00	37.74	4.02
1198	1213	2.087646	GTCCAGGCTTCAGATGGTTTC	58.912	52.381	0.00	0.00	35.51	2.78
1201	1216	2.363683	CAGGCTTCAGATGGTTTCCTC	58.636	52.381	0.00	0.00	0.00	3.71
1202	1217	1.283321	AGGCTTCAGATGGTTTCCTCC	59.717	52.381	0.00	0.00	0.00	4.30
1203	1218	1.283321	GGCTTCAGATGGTTTCCTCCT	59.717	52.381	0.00	0.00	0.00	3.69
1204	1219	2.363683	GCTTCAGATGGTTTCCTCCTG	58.636	52.381	0.00	0.00	0.00	3.86
1205	1220	2.290577	GCTTCAGATGGTTTCCTCCTGT	60.291	50.000	0.00	0.00	0.00	4.00
1206	1221	3.812167	GCTTCAGATGGTTTCCTCCTGTT	60.812	47.826	0.00	0.00	0.00	3.16
1207	1222	3.423539	TCAGATGGTTTCCTCCTGTTG	57.576	47.619	0.00	0.00	0.00	3.33
1232	1247	4.752879	ATGTACAGGCGCGCGGTT	62.753	61.111	33.06	15.97	0.00	4.44
1340	1355	2.106683	CAAGGGATTCCGCGTCACC	61.107	63.158	4.92	2.68	38.33	4.02
1434	1449	1.202580	GCAAGCTGGACATCCTCGTAT	60.203	52.381	0.00	0.00	36.82	3.06
1437	1452	2.945456	AGCTGGACATCCTCGTATGTA	58.055	47.619	0.00	0.00	40.17	2.29
1444	1459	4.430007	GACATCCTCGTATGTAAAGCACA	58.570	43.478	0.00	0.00	40.17	4.57
1448	1463	2.671396	CCTCGTATGTAAAGCACACCAC	59.329	50.000	0.00	0.00	40.86	4.16
1467	1482	1.383248	ATCTTCTCCCCAGTCCCCG	60.383	63.158	0.00	0.00	0.00	5.73
1492	1507	5.050091	CACTTTTGTCGATCTGTTGCTAACT	60.050	40.000	0.00	0.00	0.00	2.24
1493	1508	5.527582	ACTTTTGTCGATCTGTTGCTAACTT	59.472	36.000	0.00	0.00	0.00	2.66
1507	1522	5.593679	TGCTAACTTCTGGAGTATGTACC	57.406	43.478	0.00	0.00	37.72	3.34
1536	1668	8.126700	TCTTTCTTAGTTCCGTCACAAATTTTC	58.873	33.333	0.00	0.00	0.00	2.29
1542	1674	1.386412	CCGTCACAAATTTTCGCATGC	59.614	47.619	7.91	7.91	0.00	4.06
1547	1679	3.493877	TCACAAATTTTCGCATGCTTTGG	59.506	39.130	24.60	16.74	32.47	3.28
1564	1698	0.036765	TGGTTCCTGTATGTCGGCAC	60.037	55.000	0.00	0.00	0.00	5.01
1582	1718	5.985530	TCGGCACAGTATATCTCTTTGAATG	59.014	40.000	0.00	0.00	0.00	2.67
1585	1721	5.528690	GCACAGTATATCTCTTTGAATGCCA	59.471	40.000	0.00	0.00	0.00	4.92
1618	1757	4.939439	TGATGTGGATTGAGTTCATGTGAG	59.061	41.667	0.00	0.00	0.00	3.51
1619	1758	4.622260	TGTGGATTGAGTTCATGTGAGA	57.378	40.909	0.00	0.00	0.00	3.27
1632	1771	5.784750	TCATGTGAGAAAAGATAAGTGCG	57.215	39.130	0.00	0.00	0.00	5.34
1687	1826	3.707102	TCGTGGGGTGTCATCATGTTATA	59.293	43.478	0.00	0.00	0.00	0.98
1819	1961	5.830912	TGCTTCAGTAATGTGTTTTCCTTG	58.169	37.500	0.00	0.00	0.00	3.61
1834	1976	8.192110	GTGTTTTCCTTGGAACATTTGTACTAA	58.808	33.333	0.98	0.00	39.30	2.24
1886	3536	4.163427	TCCTTTTTAATGGTTCCATGCCA	58.837	39.130	5.02	0.00	40.68	4.92
1901	3551	6.508030	TCCATGCCATTTATTAGTACTCCA	57.492	37.500	0.00	0.00	0.00	3.86
1919	3569	9.449719	AGTACTCCATTTGTCCTAAATTACTTG	57.550	33.333	0.00	0.00	0.00	3.16
1920	3570	9.227777	GTACTCCATTTGTCCTAAATTACTTGT	57.772	33.333	0.00	0.00	0.00	3.16
1921	3571	8.336801	ACTCCATTTGTCCTAAATTACTTGTC	57.663	34.615	0.00	0.00	0.00	3.18
1922	3572	8.164070	ACTCCATTTGTCCTAAATTACTTGTCT	58.836	33.333	0.00	0.00	0.00	3.41
1944	3594	7.014326	TGTCTTAGATTTGTCGTGCCTAGATAT	59.986	37.037	0.00	0.00	0.00	1.63
1948	3598	6.868622	AGATTTGTCGTGCCTAGATATATCC	58.131	40.000	9.18	0.00	0.00	2.59
2047	3703	1.135689	GCAGATAAACAACGTGGGCAG	60.136	52.381	0.00	0.00	0.00	4.85
2293	3949	7.041576	GCAGCATATGTGAAGAAGATAACATGA	60.042	37.037	0.00	0.00	35.07	3.07
2302	3958	9.322773	GTGAAGAAGATAACATGAAGATCATCA	57.677	33.333	2.64	2.64	34.28	3.07
2390	4053	0.878523	TGAGTGGGCGAAAGACAACG	60.879	55.000	0.00	0.00	45.40	4.10
2612	4280	9.784531	TGTTCTCATTCCTGATTCTTAATATCC	57.215	33.333	0.00	0.00	0.00	2.59
2634	4302	8.723942	ATCCTATAAACACAGAGACATTGTTC	57.276	34.615	0.00	0.00	32.24	3.18
2635	4303	7.103641	TCCTATAAACACAGAGACATTGTTCC	58.896	38.462	0.00	0.00	32.24	3.62
2636	4304	6.878923	CCTATAAACACAGAGACATTGTTCCA	59.121	38.462	0.00	0.00	32.24	3.53
2638	4306	5.695851	AAACACAGAGACATTGTTCCATC	57.304	39.130	0.00	0.00	32.24	3.51
2639	4307	3.679389	ACACAGAGACATTGTTCCATCC	58.321	45.455	0.00	0.00	0.00	3.51
2694	4385	7.308348	CCTTACCACAACCTTTGTACACTAATG	60.308	40.741	0.00	0.00	43.23	1.90
2732	4579	4.583426	GTTCAATTTGAACGGGCAAAAAC	58.417	39.130	22.58	1.44	45.88	2.43
2735	4582	2.301577	TTTGAACGGGCAAAAACTGG	57.698	45.000	2.94	0.00	35.03	4.00
3253	5127	4.081406	CCCAGATTGTTGAAGTGAATGGA	58.919	43.478	0.00	0.00	0.00	3.41
3327	5201	2.814183	AAGTACTCGTTCGGCCAGCG	62.814	60.000	2.24	3.59	0.00	5.18
4454	6340	7.186804	GTCTGCATATAAACTTACACGCAAAT	58.813	34.615	0.00	0.00	0.00	2.32
5039	6928	2.743664	TGGTTCAGAGCAAATCGTGATG	59.256	45.455	0.00	0.00	0.00	3.07
5040	6929	2.744202	GGTTCAGAGCAAATCGTGATGT	59.256	45.455	0.00	0.00	0.00	3.06
5164	10405	6.000840	TCTGAATTTTTATTTTGGGTTGGCC	58.999	36.000	0.00	0.00	0.00	5.36
5188	10432	1.218875	TTGAAACACGACGCGCAGAT	61.219	50.000	5.73	0.00	0.00	2.90
5191	10435	2.765250	AAACACGACGCGCAGATCCT	62.765	55.000	5.73	0.00	0.00	3.24
5258	10503	2.669569	GCGCAAGGCCTCTGTCAA	60.670	61.111	5.23	0.00	34.80	3.18
5259	10504	2.684843	GCGCAAGGCCTCTGTCAAG	61.685	63.158	5.23	2.28	34.80	3.02
5260	10505	1.302033	CGCAAGGCCTCTGTCAAGT	60.302	57.895	5.23	0.00	0.00	3.16
5261	10506	0.037326	CGCAAGGCCTCTGTCAAGTA	60.037	55.000	5.23	0.00	0.00	2.24
5262	10507	1.608025	CGCAAGGCCTCTGTCAAGTAA	60.608	52.381	5.23	0.00	0.00	2.24
5263	10508	2.504367	GCAAGGCCTCTGTCAAGTAAA	58.496	47.619	5.23	0.00	0.00	2.01
5264	10509	3.084786	GCAAGGCCTCTGTCAAGTAAAT	58.915	45.455	5.23	0.00	0.00	1.40
5265	10510	4.261801	GCAAGGCCTCTGTCAAGTAAATA	58.738	43.478	5.23	0.00	0.00	1.40
5266	10511	4.333926	GCAAGGCCTCTGTCAAGTAAATAG	59.666	45.833	5.23	0.00	0.00	1.73
5267	10512	4.762289	AGGCCTCTGTCAAGTAAATAGG	57.238	45.455	0.00	0.00	0.00	2.57
5268	10513	3.118223	AGGCCTCTGTCAAGTAAATAGGC	60.118	47.826	0.00	0.00	45.79	3.93
5269	10514	3.873910	GCCTCTGTCAAGTAAATAGGCA	58.126	45.455	5.61	0.00	45.81	4.75
5270	10515	4.261801	GCCTCTGTCAAGTAAATAGGCAA	58.738	43.478	5.61	0.00	45.81	4.52
5271	10516	4.884164	GCCTCTGTCAAGTAAATAGGCAAT	59.116	41.667	5.61	0.00	45.81	3.56
5272	10517	5.358160	GCCTCTGTCAAGTAAATAGGCAATT	59.642	40.000	5.61	0.00	45.81	2.32
5273	10518	6.127619	GCCTCTGTCAAGTAAATAGGCAATTT	60.128	38.462	5.61	2.34	45.81	1.82
5274	10519	7.577616	GCCTCTGTCAAGTAAATAGGCAATTTT	60.578	37.037	5.61	0.00	45.81	1.82
5275	10520	8.306761	CCTCTGTCAAGTAAATAGGCAATTTTT	58.693	33.333	2.07	0.00	38.71	1.94
5312	10557	7.472543	ACTCAAGAAACAATTACGATAATGGC	58.527	34.615	0.00	0.00	0.00	4.40
5313	10558	7.120579	ACTCAAGAAACAATTACGATAATGGCA	59.879	33.333	0.00	0.00	0.00	4.92
5314	10559	7.995289	TCAAGAAACAATTACGATAATGGCAT	58.005	30.769	0.00	0.00	0.00	4.40
5315	10560	8.465999	TCAAGAAACAATTACGATAATGGCATT	58.534	29.630	18.01	18.01	0.00	3.56
5316	10561	8.533965	CAAGAAACAATTACGATAATGGCATTG	58.466	33.333	22.57	8.65	0.00	2.82
5317	10562	7.995289	AGAAACAATTACGATAATGGCATTGA	58.005	30.769	22.57	7.33	0.00	2.57
5318	10563	7.915397	AGAAACAATTACGATAATGGCATTGAC	59.085	33.333	22.57	14.19	0.00	3.18
5319	10564	6.691754	ACAATTACGATAATGGCATTGACA	57.308	33.333	22.57	3.11	0.00	3.58
5320	10565	7.094508	ACAATTACGATAATGGCATTGACAA	57.905	32.000	22.57	9.43	0.00	3.18
5321	10566	7.542890	ACAATTACGATAATGGCATTGACAAA	58.457	30.769	22.57	10.38	0.00	2.83
5322	10567	7.701924	ACAATTACGATAATGGCATTGACAAAG	59.298	33.333	22.57	9.95	0.00	2.77
5323	10568	6.751514	TTACGATAATGGCATTGACAAAGT	57.248	33.333	22.57	14.52	0.00	2.66
5324	10569	5.643379	ACGATAATGGCATTGACAAAGTT	57.357	34.783	22.57	0.00	0.00	2.66
5325	10570	6.751514	ACGATAATGGCATTGACAAAGTTA	57.248	33.333	22.57	0.00	0.00	2.24
5326	10571	6.551736	ACGATAATGGCATTGACAAAGTTAC	58.448	36.000	22.57	1.65	0.00	2.50
5327	10572	6.374333	ACGATAATGGCATTGACAAAGTTACT	59.626	34.615	22.57	0.00	0.00	2.24
5328	10573	6.688385	CGATAATGGCATTGACAAAGTTACTG	59.312	38.462	22.57	0.00	0.00	2.74
5329	10574	7.413988	CGATAATGGCATTGACAAAGTTACTGA	60.414	37.037	22.57	0.00	0.00	3.41
5330	10575	6.594788	AATGGCATTGACAAAGTTACTGAT	57.405	33.333	12.82	0.00	0.00	2.90
5331	10576	6.594788	ATGGCATTGACAAAGTTACTGATT	57.405	33.333	0.00	0.00	0.00	2.57
5332	10577	7.701539	ATGGCATTGACAAAGTTACTGATTA	57.298	32.000	0.00	0.00	0.00	1.75
5333	10578	6.908825	TGGCATTGACAAAGTTACTGATTAC	58.091	36.000	0.00	0.00	0.00	1.89
5334	10579	6.488344	TGGCATTGACAAAGTTACTGATTACA	59.512	34.615	0.00	0.00	0.00	2.41
5335	10580	7.013750	TGGCATTGACAAAGTTACTGATTACAA	59.986	33.333	0.00	0.00	0.00	2.41
5336	10581	7.865385	GGCATTGACAAAGTTACTGATTACAAA	59.135	33.333	0.00	0.00	0.00	2.83
5337	10582	8.690840	GCATTGACAAAGTTACTGATTACAAAC	58.309	33.333	0.00	0.00	0.00	2.93
5338	10583	9.180678	CATTGACAAAGTTACTGATTACAAACC	57.819	33.333	0.00	0.00	0.00	3.27
5339	10584	6.950545	TGACAAAGTTACTGATTACAAACCG	58.049	36.000	0.00	0.00	0.00	4.44
5340	10585	6.762187	TGACAAAGTTACTGATTACAAACCGA	59.238	34.615	0.00	0.00	0.00	4.69
5341	10586	7.042321	TGACAAAGTTACTGATTACAAACCGAG	60.042	37.037	0.00	0.00	0.00	4.63
5342	10587	5.857822	AAGTTACTGATTACAAACCGAGC	57.142	39.130	0.00	0.00	0.00	5.03
5343	10588	4.890088	AGTTACTGATTACAAACCGAGCA	58.110	39.130	0.00	0.00	0.00	4.26
5344	10589	5.302360	AGTTACTGATTACAAACCGAGCAA	58.698	37.500	0.00	0.00	0.00	3.91
5345	10590	5.408604	AGTTACTGATTACAAACCGAGCAAG	59.591	40.000	0.00	0.00	0.00	4.01
5346	10591	2.484264	ACTGATTACAAACCGAGCAAGC	59.516	45.455	0.00	0.00	0.00	4.01
5347	10592	2.483877	CTGATTACAAACCGAGCAAGCA	59.516	45.455	0.00	0.00	0.00	3.91
5348	10593	3.081061	TGATTACAAACCGAGCAAGCAT	58.919	40.909	0.00	0.00	0.00	3.79
5349	10594	2.987413	TTACAAACCGAGCAAGCATG	57.013	45.000	0.00	0.00	0.00	4.06
5350	10595	1.890876	TACAAACCGAGCAAGCATGT	58.109	45.000	0.00	0.00	0.00	3.21
5351	10596	1.890876	ACAAACCGAGCAAGCATGTA	58.109	45.000	0.00	0.00	0.00	2.29
5352	10597	1.535462	ACAAACCGAGCAAGCATGTAC	59.465	47.619	0.00	0.00	0.00	2.90
5353	10598	1.806542	CAAACCGAGCAAGCATGTACT	59.193	47.619	0.00	0.00	0.00	2.73
5354	10599	3.000041	CAAACCGAGCAAGCATGTACTA	59.000	45.455	0.00	0.00	0.00	1.82
5355	10600	2.295253	ACCGAGCAAGCATGTACTAC	57.705	50.000	0.00	0.00	0.00	2.73
5356	10601	1.548719	ACCGAGCAAGCATGTACTACA	59.451	47.619	0.00	0.00	0.00	2.74
5357	10602	1.927174	CCGAGCAAGCATGTACTACAC	59.073	52.381	0.00	0.00	0.00	2.90
5358	10603	2.606108	CGAGCAAGCATGTACTACACA	58.394	47.619	0.00	0.00	42.69	3.72
5360	10605	4.359706	CGAGCAAGCATGTACTACACATA	58.640	43.478	0.00	0.00	46.47	2.29
5361	10606	4.984785	CGAGCAAGCATGTACTACACATAT	59.015	41.667	0.00	0.00	46.47	1.78
5362	10607	6.149633	CGAGCAAGCATGTACTACACATATA	58.850	40.000	0.00	0.00	46.47	0.86
5363	10608	6.306596	CGAGCAAGCATGTACTACACATATAG	59.693	42.308	0.00	0.00	46.47	1.31
5364	10609	7.055667	AGCAAGCATGTACTACACATATAGT	57.944	36.000	0.00	0.00	46.47	2.12
5365	10610	8.178313	AGCAAGCATGTACTACACATATAGTA	57.822	34.615	0.00	0.00	46.47	1.82
5366	10611	8.300286	AGCAAGCATGTACTACACATATAGTAG	58.700	37.037	11.15	11.15	46.47	2.57
5367	10612	8.297426	GCAAGCATGTACTACACATATAGTAGA	58.703	37.037	17.01	2.98	46.47	2.59
5389	10634	7.889873	AGAAAGATCTACACACATAGCTAGT	57.110	36.000	0.00	0.00	32.88	2.57
5390	10635	8.982091	AGAAAGATCTACACACATAGCTAGTA	57.018	34.615	0.00	0.00	32.88	1.82
5391	10636	8.842280	AGAAAGATCTACACACATAGCTAGTAC	58.158	37.037	0.00	0.00	32.88	2.73
5392	10637	8.754991	AAAGATCTACACACATAGCTAGTACT	57.245	34.615	0.00	0.00	0.00	2.73
5411	10656	7.014092	AGTACTAGTAGAAACATCTACGCAC	57.986	40.000	1.87	7.07	45.23	5.34
5414	10659	7.563888	ACTAGTAGAAACATCTACGCACATA	57.436	36.000	3.59	0.00	45.23	2.29
5481	10726	5.224441	AGTTATACCCTTCAATAGGCCAGA	58.776	41.667	5.01	0.00	43.27	3.86
5492	10737	4.704833	GGCCAGACAGAAGCCGCA	62.705	66.667	0.00	0.00	36.84	5.69
5509	10757	3.923864	AGCGGCGGTGACAACAGA	61.924	61.111	12.25	0.00	0.00	3.41
5573	10851	1.509463	GTCGGTCTGCGACATGGTA	59.491	57.895	0.00	0.00	36.49	3.25
5604	10882	0.595310	GACGCGGATGTAGAGGAAGC	60.595	60.000	12.47	0.00	0.00	3.86
5613	10891	2.235891	TGTAGAGGAAGCAGACGAACA	58.764	47.619	0.00	0.00	0.00	3.18
5653	10931	6.183360	CGTAGTCGCTTCCCAAAAATCTAATT	60.183	38.462	0.00	0.00	0.00	1.40
5711	10990	2.268022	GAGACCTGCTCTTCCGTCA	58.732	57.895	0.00	0.00	40.61	4.35
5764	11052	1.286570	CGGCAGCAGCAAATGAACA	59.713	52.632	2.65	0.00	44.61	3.18
5780	11069	1.101049	AACAACAGTGGGCGTGGAAG	61.101	55.000	0.00	0.00	0.00	3.46
5781	11070	2.594592	AACAGTGGGCGTGGAAGC	60.595	61.111	0.00	0.00	0.00	3.86
5782	11071	3.414136	AACAGTGGGCGTGGAAGCA	62.414	57.895	0.00	0.00	39.27	3.91
5798	11096	3.472283	AAGCAGAGATGCGATCTGATT	57.528	42.857	14.71	12.09	45.79	2.57
5799	11097	3.029320	AGCAGAGATGCGATCTGATTC	57.971	47.619	14.71	0.40	45.80	2.52
5800	11098	1.720316	GCAGAGATGCGATCTGATTCG	59.280	52.381	14.71	0.00	45.80	3.34
5809	11107	1.858091	GATCTGATTCGCATGACGGT	58.142	50.000	0.00	0.00	43.89	4.83
5824	11122	1.403323	GACGGTTAGGGTTAGGAGACG	59.597	57.143	0.00	0.00	0.00	4.18
5829	11127	0.465097	TAGGGTTAGGAGACGCCTCG	60.465	60.000	0.00	0.00	46.97	4.63
5885	11233	1.153449	TCGACCCACGATCCAATGC	60.153	57.895	0.00	0.00	46.45	3.56
5919	11269	2.038295	CCCAGCTGTCAGAAACTCTCTT	59.962	50.000	13.81	0.00	29.07	2.85
5922	11272	4.213059	CCAGCTGTCAGAAACTCTCTTTTC	59.787	45.833	13.81	0.00	35.97	2.29
6090	11522	4.771054	GTCCAACTCCTCTCCAACTAGTAA	59.229	45.833	0.00	0.00	0.00	2.24
6114	11547	2.195741	GGACTAAACTTCCCACCACC	57.804	55.000	0.00	0.00	0.00	4.61
6121	11554	0.546988	ACTTCCCACCACCCCTAGTC	60.547	60.000	0.00	0.00	0.00	2.59
6138	11571	4.844085	CCTAGTCCCATATAACCCACATGA	59.156	45.833	0.00	0.00	0.00	3.07

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.069430	CCCTTCCCTCCCTCTGCTC	61.069	68.421	0.00	0.00	0.00	4.26
2	3	2.041265	TCCCTTCCCTCCCTCTGC	59.959	66.667	0.00	0.00	0.00	4.26
3	4	0.398381	CTCTCCCTTCCCTCCCTCTG	60.398	65.000	0.00	0.00	0.00	3.35
4	5	0.556380	TCTCTCCCTTCCCTCCCTCT	60.556	60.000	0.00	0.00	0.00	3.69
6	7	1.707200	GTCTCTCCCTTCCCTCCCT	59.293	63.158	0.00	0.00	0.00	4.20
7	8	1.758906	CGTCTCTCCCTTCCCTCCC	60.759	68.421	0.00	0.00	0.00	4.30
8	9	0.105913	ATCGTCTCTCCCTTCCCTCC	60.106	60.000	0.00	0.00	0.00	4.30
9	10	1.036707	CATCGTCTCTCCCTTCCCTC	58.963	60.000	0.00	0.00	0.00	4.30
10	11	0.397816	CCATCGTCTCTCCCTTCCCT	60.398	60.000	0.00	0.00	0.00	4.20
11	12	1.403687	CCCATCGTCTCTCCCTTCCC	61.404	65.000	0.00	0.00	0.00	3.97
12	13	1.403687	CCCCATCGTCTCTCCCTTCC	61.404	65.000	0.00	0.00	0.00	3.46
13	14	0.397254	TCCCCATCGTCTCTCCCTTC	60.397	60.000	0.00	0.00	0.00	3.46
15	16	1.231641	CTCCCCATCGTCTCTCCCT	59.768	63.158	0.00	0.00	0.00	4.20
17	18	2.503382	GCCTCCCCATCGTCTCTCC	61.503	68.421	0.00	0.00	0.00	3.71
18	19	2.851071	CGCCTCCCCATCGTCTCTC	61.851	68.421	0.00	0.00	0.00	3.20
19	20	2.835431	CGCCTCCCCATCGTCTCT	60.835	66.667	0.00	0.00	0.00	3.10
20	21	2.423898	TTCGCCTCCCCATCGTCTC	61.424	63.158	0.00	0.00	0.00	3.36
21	22	2.363795	TTCGCCTCCCCATCGTCT	60.364	61.111	0.00	0.00	0.00	4.18
22	23	2.202892	GTTCGCCTCCCCATCGTC	60.203	66.667	0.00	0.00	0.00	4.20
23	24	2.866523	TAGGTTCGCCTCCCCATCGT	62.867	60.000	0.00	0.00	46.86	3.73
24	25	2.088674	CTAGGTTCGCCTCCCCATCG	62.089	65.000	0.00	0.00	46.86	3.84
25	26	0.759436	TCTAGGTTCGCCTCCCCATC	60.759	60.000	0.00	0.00	46.86	3.51
26	27	0.760945	CTCTAGGTTCGCCTCCCCAT	60.761	60.000	0.00	0.00	46.86	4.00
27	28	1.381327	CTCTAGGTTCGCCTCCCCA	60.381	63.158	0.00	0.00	46.86	4.96
28	29	1.076192	TCTCTAGGTTCGCCTCCCC	60.076	63.158	0.00	0.00	46.86	4.81
29	30	1.110518	CCTCTCTAGGTTCGCCTCCC	61.111	65.000	0.00	0.00	46.86	4.30
30	31	0.106619	TCCTCTCTAGGTTCGCCTCC	60.107	60.000	0.00	0.00	46.86	4.30
31	32	1.134037	TCTCCTCTCTAGGTTCGCCTC	60.134	57.143	0.00	0.00	46.86	4.70
33	34	1.611491	CATCTCCTCTCTAGGTTCGCC	59.389	57.143	0.00	0.00	44.09	5.54
34	35	1.000717	GCATCTCCTCTCTAGGTTCGC	60.001	57.143	0.00	0.00	44.09	4.70
35	36	1.265635	CGCATCTCCTCTCTAGGTTCG	59.734	57.143	0.00	0.00	44.09	3.95
36	37	2.292292	GTCGCATCTCCTCTCTAGGTTC	59.708	54.545	0.00	0.00	44.09	3.62
37	38	2.303175	GTCGCATCTCCTCTCTAGGTT	58.697	52.381	0.00	0.00	44.09	3.50
38	39	1.213182	TGTCGCATCTCCTCTCTAGGT	59.787	52.381	0.00	0.00	44.09	3.08
39	40	1.974265	TGTCGCATCTCCTCTCTAGG	58.026	55.000	0.00	0.00	45.21	3.02
40	41	2.228582	CCATGTCGCATCTCCTCTCTAG	59.771	54.545	0.00	0.00	0.00	2.43
41	42	2.234143	CCATGTCGCATCTCCTCTCTA	58.766	52.381	0.00	0.00	0.00	2.43
42	43	1.039068	CCATGTCGCATCTCCTCTCT	58.961	55.000	0.00	0.00	0.00	3.10
43	44	0.749649	ACCATGTCGCATCTCCTCTC	59.250	55.000	0.00	0.00	0.00	3.20
44	45	1.137872	GAACCATGTCGCATCTCCTCT	59.862	52.381	0.00	0.00	0.00	3.69
45	46	1.576356	GAACCATGTCGCATCTCCTC	58.424	55.000	0.00	0.00	0.00	3.71
46	47	0.179000	GGAACCATGTCGCATCTCCT	59.821	55.000	0.00	0.00	0.00	3.69
47	48	2.695314	GGAACCATGTCGCATCTCC	58.305	57.895	0.00	0.00	0.00	3.71
65	66	3.075005	TTTCCTCTCCCTCCGCGG	61.075	66.667	22.12	22.12	0.00	6.46
66	67	2.010582	CTCTTTCCTCTCCCTCCGCG	62.011	65.000	0.00	0.00	0.00	6.46
67	68	1.819905	CTCTTTCCTCTCCCTCCGC	59.180	63.158	0.00	0.00	0.00	5.54
68	69	1.681486	GGCTCTTTCCTCTCCCTCCG	61.681	65.000	0.00	0.00	0.00	4.63
69	70	0.618968	TGGCTCTTTCCTCTCCCTCC	60.619	60.000	0.00	0.00	0.00	4.30
70	71	0.539518	GTGGCTCTTTCCTCTCCCTC	59.460	60.000	0.00	0.00	0.00	4.30
71	72	0.912006	GGTGGCTCTTTCCTCTCCCT	60.912	60.000	0.00	0.00	0.00	4.20
72	73	1.604915	GGTGGCTCTTTCCTCTCCC	59.395	63.158	0.00	0.00	0.00	4.30
73	74	1.219393	CGGTGGCTCTTTCCTCTCC	59.781	63.158	0.00	0.00	0.00	3.71
74	75	1.219393	CCGGTGGCTCTTTCCTCTC	59.781	63.158	0.00	0.00	0.00	3.20
75	76	1.128188	AACCGGTGGCTCTTTCCTCT	61.128	55.000	8.52	0.00	0.00	3.69
76	77	0.673956	GAACCGGTGGCTCTTTCCTC	60.674	60.000	8.52	0.00	0.00	3.71
77	78	1.375326	GAACCGGTGGCTCTTTCCT	59.625	57.895	8.52	0.00	0.00	3.36
78	79	1.674651	GGAACCGGTGGCTCTTTCC	60.675	63.158	8.52	5.49	0.00	3.13
79	80	2.033194	CGGAACCGGTGGCTCTTTC	61.033	63.158	8.52	0.00	35.56	2.62
80	81	2.032071	CGGAACCGGTGGCTCTTT	59.968	61.111	8.52	0.00	35.56	2.52
81	82	4.699522	GCGGAACCGGTGGCTCTT	62.700	66.667	8.52	0.00	40.19	2.85
86	87	4.752879	ATCACGCGGAACCGGTGG	62.753	66.667	23.38	1.19	39.36	4.61
87	88	2.736682	GAATCACGCGGAACCGGTG	61.737	63.158	8.52	20.31	39.84	4.94
88	89	2.433664	GAATCACGCGGAACCGGT	60.434	61.111	12.47	0.00	40.19	5.28
89	90	3.192922	GGAATCACGCGGAACCGG	61.193	66.667	12.47	0.00	40.19	5.28
90	91	2.125673	AGGAATCACGCGGAACCG	60.126	61.111	12.47	9.00	43.09	4.44
91	92	1.814169	GGAGGAATCACGCGGAACC	60.814	63.158	12.47	12.47	0.00	3.62
92	93	2.165301	CGGAGGAATCACGCGGAAC	61.165	63.158	12.47	4.09	0.00	3.62
93	94	1.672854	ATCGGAGGAATCACGCGGAA	61.673	55.000	12.47	0.00	0.00	4.30
94	95	1.672854	AATCGGAGGAATCACGCGGA	61.673	55.000	12.47	5.24	0.00	5.54
95	96	0.810031	AAATCGGAGGAATCACGCGG	60.810	55.000	12.47	0.00	0.00	6.46
96	97	0.301687	CAAATCGGAGGAATCACGCG	59.698	55.000	3.53	3.53	0.00	6.01
97	98	0.657840	CCAAATCGGAGGAATCACGC	59.342	55.000	0.00	0.00	36.56	5.34
98	99	2.309528	TCCAAATCGGAGGAATCACG	57.690	50.000	0.00	0.00	39.64	4.35
107	108	1.335810	CGTCGATACCTCCAAATCGGA	59.664	52.381	5.04	0.00	43.94	4.55
108	109	1.767289	CGTCGATACCTCCAAATCGG	58.233	55.000	5.04	0.00	43.94	4.18
109	110	1.129326	GCGTCGATACCTCCAAATCG	58.871	55.000	0.00	0.00	44.88	3.34
110	111	1.129326	CGCGTCGATACCTCCAAATC	58.871	55.000	0.00	0.00	0.00	2.17
111	112	0.458669	ACGCGTCGATACCTCCAAAT	59.541	50.000	5.58	0.00	0.00	2.32
112	113	0.244450	AACGCGTCGATACCTCCAAA	59.756	50.000	14.44	0.00	0.00	3.28
113	114	0.244450	AAACGCGTCGATACCTCCAA	59.756	50.000	14.44	0.00	0.00	3.53
114	115	0.179156	GAAACGCGTCGATACCTCCA	60.179	55.000	14.44	0.00	0.00	3.86
115	116	1.198608	CGAAACGCGTCGATACCTCC	61.199	60.000	14.44	0.00	43.86	4.30
116	117	0.247814	TCGAAACGCGTCGATACCTC	60.248	55.000	14.44	0.00	44.76	3.85
117	118	1.796151	TCGAAACGCGTCGATACCT	59.204	52.632	14.44	0.00	44.76	3.08
118	119	4.365287	TCGAAACGCGTCGATACC	57.635	55.556	14.44	0.00	44.76	2.73
123	124	0.156035	CCGATATTCGAAACGCGTCG	59.844	55.000	14.44	13.89	43.74	5.12
124	125	0.111835	GCCGATATTCGAAACGCGTC	60.112	55.000	14.44	0.00	43.74	5.19
125	126	1.804273	CGCCGATATTCGAAACGCGT	61.804	55.000	5.58	5.58	43.74	6.01
126	127	1.155087	CGCCGATATTCGAAACGCG	60.155	57.895	3.53	3.53	43.74	6.01
127	128	0.573521	TTCGCCGATATTCGAAACGC	59.426	50.000	0.00	0.00	43.74	4.84
128	129	2.982919	TTTCGCCGATATTCGAAACG	57.017	45.000	0.00	8.75	45.86	3.60
144	145	2.234300	TCCCACCGAGCGAATATTTC	57.766	50.000	0.00	0.00	0.00	2.17
145	146	2.285977	GTTCCCACCGAGCGAATATTT	58.714	47.619	0.00	0.00	0.00	1.40
146	147	1.949465	GTTCCCACCGAGCGAATATT	58.051	50.000	0.00	0.00	0.00	1.28
147	148	3.680842	GTTCCCACCGAGCGAATAT	57.319	52.632	0.00	0.00	0.00	1.28
154	155	2.261671	CAGGTCGTTCCCACCGAG	59.738	66.667	0.00	0.00	39.13	4.63
155	156	3.307906	CCAGGTCGTTCCCACCGA	61.308	66.667	0.00	0.00	39.13	4.69
156	157	3.173167	AACCAGGTCGTTCCCACCG	62.173	63.158	0.00	0.00	39.13	4.94
157	158	1.302271	GAACCAGGTCGTTCCCACC	60.302	63.158	0.00	0.00	36.87	4.61
158	159	4.373771	GAACCAGGTCGTTCCCAC	57.626	61.111	0.00	0.00	36.87	4.61
172	173	2.547826	GTACATAGCTGGAACGGGAAC	58.452	52.381	0.00	0.00	33.56	3.62
173	174	1.483415	GGTACATAGCTGGAACGGGAA	59.517	52.381	0.00	0.00	33.56	3.97
174	175	1.117150	GGTACATAGCTGGAACGGGA	58.883	55.000	0.00	0.00	33.56	5.14
175	176	0.828022	TGGTACATAGCTGGAACGGG	59.172	55.000	0.00	0.00	33.56	5.28
176	177	2.676342	GTTTGGTACATAGCTGGAACGG	59.324	50.000	0.00	0.00	39.30	4.44
177	178	2.347452	CGTTTGGTACATAGCTGGAACG	59.653	50.000	0.00	0.00	39.30	3.95
178	179	2.095372	GCGTTTGGTACATAGCTGGAAC	59.905	50.000	0.00	0.00	39.30	3.62
179	180	2.289756	TGCGTTTGGTACATAGCTGGAA	60.290	45.455	0.00	0.00	39.30	3.53
180	181	1.276705	TGCGTTTGGTACATAGCTGGA	59.723	47.619	0.00	0.00	39.30	3.86
181	182	1.665679	CTGCGTTTGGTACATAGCTGG	59.334	52.381	0.00	0.00	39.30	4.85
182	183	1.665679	CCTGCGTTTGGTACATAGCTG	59.334	52.381	0.00	0.00	39.30	4.24
183	184	1.553248	TCCTGCGTTTGGTACATAGCT	59.447	47.619	0.00	0.00	39.30	3.32
184	185	2.018542	TCCTGCGTTTGGTACATAGC	57.981	50.000	0.00	0.00	39.30	2.97
185	186	2.347452	CGTTCCTGCGTTTGGTACATAG	59.653	50.000	0.00	0.00	39.30	2.23
186	187	2.029200	TCGTTCCTGCGTTTGGTACATA	60.029	45.455	0.00	0.00	39.30	2.29
187	188	1.153353	CGTTCCTGCGTTTGGTACAT	58.847	50.000	0.00	0.00	39.30	2.29
188	189	0.104487	TCGTTCCTGCGTTTGGTACA	59.896	50.000	0.00	0.00	0.00	2.90
189	190	0.788391	CTCGTTCCTGCGTTTGGTAC	59.212	55.000	0.00	0.00	0.00	3.34
190	191	0.320073	CCTCGTTCCTGCGTTTGGTA	60.320	55.000	0.00	0.00	0.00	3.25
191	192	1.597027	CCTCGTTCCTGCGTTTGGT	60.597	57.895	0.00	0.00	0.00	3.67
192	193	2.966309	GCCTCGTTCCTGCGTTTGG	61.966	63.158	0.00	0.00	0.00	3.28
193	194	2.556287	GCCTCGTTCCTGCGTTTG	59.444	61.111	0.00	0.00	0.00	2.93
194	195	2.668550	GGCCTCGTTCCTGCGTTT	60.669	61.111	0.00	0.00	0.00	3.60
195	196	4.699522	GGGCCTCGTTCCTGCGTT	62.700	66.667	0.84	0.00	0.00	4.84
198	199	3.959991	GACTGGGCCTCGTTCCTGC	62.960	68.421	4.53	0.00	0.00	4.85
199	200	2.266055	GACTGGGCCTCGTTCCTG	59.734	66.667	4.53	0.00	0.00	3.86
200	201	2.203788	TGACTGGGCCTCGTTCCT	60.204	61.111	4.53	0.00	0.00	3.36
201	202	2.047179	GTGACTGGGCCTCGTTCC	60.047	66.667	4.53	0.00	0.00	3.62
202	203	2.432628	CGTGACTGGGCCTCGTTC	60.433	66.667	4.53	0.00	0.00	3.95
203	204	4.003788	CCGTGACTGGGCCTCGTT	62.004	66.667	4.53	0.00	0.00	3.85
211	212	2.032071	GGTTGGACCCGTGACTGG	59.968	66.667	0.00	0.00	30.04	4.00
220	221	1.329913	GGAATGGCATGGGTTGGACC	61.330	60.000	0.00	0.00	37.60	4.46
221	222	0.614415	TGGAATGGCATGGGTTGGAC	60.614	55.000	0.00	0.00	0.00	4.02
222	223	0.614415	GTGGAATGGCATGGGTTGGA	60.614	55.000	0.00	0.00	0.00	3.53
223	224	0.615544	AGTGGAATGGCATGGGTTGG	60.616	55.000	0.00	0.00	0.00	3.77
224	225	1.066716	CAAGTGGAATGGCATGGGTTG	60.067	52.381	0.00	0.00	0.00	3.77
225	226	1.269012	CAAGTGGAATGGCATGGGTT	58.731	50.000	0.00	0.00	0.00	4.11
226	227	0.615544	CCAAGTGGAATGGCATGGGT	60.616	55.000	0.00	0.00	37.39	4.51
227	228	0.615544	ACCAAGTGGAATGGCATGGG	60.616	55.000	0.00	0.00	41.89	4.00
228	229	0.533491	CACCAAGTGGAATGGCATGG	59.467	55.000	0.00	0.00	41.89	3.66
229	230	1.548081	TCACCAAGTGGAATGGCATG	58.452	50.000	0.00	0.00	41.89	4.06
230	231	2.498481	CAATCACCAAGTGGAATGGCAT	59.502	45.455	3.83	0.00	41.89	4.40
231	232	1.894466	CAATCACCAAGTGGAATGGCA	59.106	47.619	3.83	0.00	41.89	4.92
232	233	2.170166	TCAATCACCAAGTGGAATGGC	58.830	47.619	3.83	0.00	41.89	4.40
233	234	4.813027	CTTTCAATCACCAAGTGGAATGG	58.187	43.478	3.83	0.00	43.84	3.16
234	235	4.240096	GCTTTCAATCACCAAGTGGAATG	58.760	43.478	3.83	0.00	38.94	2.67
235	236	3.896888	TGCTTTCAATCACCAAGTGGAAT	59.103	39.130	3.83	0.00	38.94	3.01
236	237	3.295093	TGCTTTCAATCACCAAGTGGAA	58.705	40.909	3.83	0.00	38.94	3.53
237	238	2.942804	TGCTTTCAATCACCAAGTGGA	58.057	42.857	3.83	0.00	38.94	4.02
238	239	3.731652	TTGCTTTCAATCACCAAGTGG	57.268	42.857	0.00	0.00	42.17	4.00
239	240	4.268405	GTGTTTGCTTTCAATCACCAAGTG	59.732	41.667	7.59	0.00	42.66	3.16
240	241	4.081752	TGTGTTTGCTTTCAATCACCAAGT	60.082	37.500	13.41	0.00	45.48	3.16
241	242	4.268405	GTGTGTTTGCTTTCAATCACCAAG	59.732	41.667	13.41	0.00	45.48	3.61
242	243	4.180057	GTGTGTTTGCTTTCAATCACCAA	58.820	39.130	13.41	0.00	45.48	3.67
243	244	3.430098	GGTGTGTTTGCTTTCAATCACCA	60.430	43.478	13.41	3.60	45.48	4.17
244	245	3.123050	GGTGTGTTTGCTTTCAATCACC	58.877	45.455	13.41	11.45	45.48	4.02
245	246	3.123050	GGGTGTGTTTGCTTTCAATCAC	58.877	45.455	10.57	10.57	45.91	3.06
246	247	3.030291	AGGGTGTGTTTGCTTTCAATCA	58.970	40.909	0.00	0.00	31.51	2.57
247	248	3.733443	AGGGTGTGTTTGCTTTCAATC	57.267	42.857	0.00	0.00	31.33	2.67
248	249	5.806654	ATAAGGGTGTGTTTGCTTTCAAT	57.193	34.783	0.00	0.00	31.33	2.57
249	250	6.016610	GTCTATAAGGGTGTGTTTGCTTTCAA	60.017	38.462	0.00	0.00	0.00	2.69
250	251	5.472137	GTCTATAAGGGTGTGTTTGCTTTCA	59.528	40.000	0.00	0.00	0.00	2.69
251	252	5.705905	AGTCTATAAGGGTGTGTTTGCTTTC	59.294	40.000	0.00	0.00	0.00	2.62
252	253	5.631119	AGTCTATAAGGGTGTGTTTGCTTT	58.369	37.500	0.00	0.00	0.00	3.51
253	254	5.242795	AGTCTATAAGGGTGTGTTTGCTT	57.757	39.130	0.00	0.00	0.00	3.91
254	255	4.910458	AGTCTATAAGGGTGTGTTTGCT	57.090	40.909	0.00	0.00	0.00	3.91
255	256	4.571176	GCTAGTCTATAAGGGTGTGTTTGC	59.429	45.833	0.00	0.00	0.00	3.68
256	257	5.116882	GGCTAGTCTATAAGGGTGTGTTTG	58.883	45.833	0.00	0.00	0.00	2.93
257	258	4.781087	TGGCTAGTCTATAAGGGTGTGTTT	59.219	41.667	0.00	0.00	0.00	2.83
258	259	4.161754	GTGGCTAGTCTATAAGGGTGTGTT	59.838	45.833	0.00	0.00	0.00	3.32
259	260	3.705072	GTGGCTAGTCTATAAGGGTGTGT	59.295	47.826	0.00	0.00	0.00	3.72
260	261	3.704566	TGTGGCTAGTCTATAAGGGTGTG	59.295	47.826	0.00	0.00	0.00	3.82
261	262	3.990369	TGTGGCTAGTCTATAAGGGTGT	58.010	45.455	0.00	0.00	0.00	4.16
262	263	5.300752	CATTGTGGCTAGTCTATAAGGGTG	58.699	45.833	0.00	0.00	0.00	4.61
263	264	4.348168	CCATTGTGGCTAGTCTATAAGGGT	59.652	45.833	0.00	0.00	0.00	4.34
264	265	4.593206	TCCATTGTGGCTAGTCTATAAGGG	59.407	45.833	0.00	0.00	37.47	3.95
265	266	5.540337	TCTCCATTGTGGCTAGTCTATAAGG	59.460	44.000	0.00	0.00	37.47	2.69
266	267	6.266558	ACTCTCCATTGTGGCTAGTCTATAAG	59.733	42.308	0.00	0.00	37.47	1.73
267	268	6.136857	ACTCTCCATTGTGGCTAGTCTATAA	58.863	40.000	0.00	0.00	37.47	0.98
268	269	5.706447	ACTCTCCATTGTGGCTAGTCTATA	58.294	41.667	0.00	0.00	37.47	1.31
269	270	4.551671	ACTCTCCATTGTGGCTAGTCTAT	58.448	43.478	0.00	0.00	37.47	1.98
270	271	3.982516	ACTCTCCATTGTGGCTAGTCTA	58.017	45.455	0.00	0.00	37.47	2.59
271	272	2.826488	ACTCTCCATTGTGGCTAGTCT	58.174	47.619	0.00	0.00	37.47	3.24
272	273	4.081642	TGTTACTCTCCATTGTGGCTAGTC	60.082	45.833	6.40	0.00	37.47	2.59
273	274	3.838317	TGTTACTCTCCATTGTGGCTAGT	59.162	43.478	7.76	7.76	37.47	2.57
274	275	4.471904	TGTTACTCTCCATTGTGGCTAG	57.528	45.455	0.00	0.00	37.47	3.42
275	276	6.747414	ATATGTTACTCTCCATTGTGGCTA	57.253	37.500	0.00	0.00	37.47	3.93
276	277	5.636903	ATATGTTACTCTCCATTGTGGCT	57.363	39.130	0.00	0.00	37.47	4.75
277	278	6.525629	ACTATATGTTACTCTCCATTGTGGC	58.474	40.000	0.00	0.00	37.47	5.01
278	279	9.477484	GTTACTATATGTTACTCTCCATTGTGG	57.523	37.037	0.00	0.00	39.43	4.17
331	332	8.255206	TCAATAGTGGGTAGTAACATAAGTGTG	58.745	37.037	0.00	0.00	38.92	3.82
334	335	8.834004	TCTCAATAGTGGGTAGTAACATAAGT	57.166	34.615	0.00	0.00	0.00	2.24
341	342	9.925545	TGTTACTATCTCAATAGTGGGTAGTAA	57.074	33.333	15.22	15.22	46.07	2.24
346	347	9.435570	ACTTATGTTACTATCTCAATAGTGGGT	57.564	33.333	8.07	0.00	46.07	4.51
347	348	9.698309	CACTTATGTTACTATCTCAATAGTGGG	57.302	37.037	8.07	0.00	46.07	4.61
354	355	9.865321	GTTACCACACTTATGTTACTATCTCAA	57.135	33.333	0.00	0.00	36.72	3.02
355	356	9.027202	TGTTACCACACTTATGTTACTATCTCA	57.973	33.333	0.00	0.00	36.72	3.27
357	358	9.817809	CATGTTACCACACTTATGTTACTATCT	57.182	33.333	0.00	0.00	36.72	1.98
358	359	9.595823	ACATGTTACCACACTTATGTTACTATC	57.404	33.333	0.00	0.00	36.72	2.08
367	368	7.663905	TGAAGCTTTACATGTTACCACACTTAT	59.336	33.333	2.30	0.00	35.03	1.73
372	373	6.892658	AATGAAGCTTTACATGTTACCACA	57.107	33.333	2.30	0.00	37.31	4.17
456	457	9.563748	GTTAATGAGGAGAGATGTAGTACTAGT	57.436	37.037	1.87	0.00	0.00	2.57
457	458	9.787435	AGTTAATGAGGAGAGATGTAGTACTAG	57.213	37.037	1.87	0.00	0.00	2.57
458	459	9.781633	GAGTTAATGAGGAGAGATGTAGTACTA	57.218	37.037	0.00	0.00	0.00	1.82
459	460	8.275758	TGAGTTAATGAGGAGAGATGTAGTACT	58.724	37.037	0.00	0.00	0.00	2.73
460	461	8.453238	TGAGTTAATGAGGAGAGATGTAGTAC	57.547	38.462	0.00	0.00	0.00	2.73
461	462	9.647918	AATGAGTTAATGAGGAGAGATGTAGTA	57.352	33.333	0.00	0.00	0.00	1.82
467	468	5.131642	TGGCAATGAGTTAATGAGGAGAGAT	59.868	40.000	0.00	0.00	0.00	2.75
528	529	1.343465	CACAGTGGGAGTAACTTCGGT	59.657	52.381	0.00	0.00	0.00	4.69
530	531	1.939838	GCCACAGTGGGAGTAACTTCG	60.940	57.143	21.77	0.00	38.19	3.79
565	566	6.670617	ACTAGCTAAGTTACTCCCACTATGA	58.329	40.000	0.00	0.00	33.35	2.15
575	576	6.039047	TGCGCTATGTTACTAGCTAAGTTACT	59.961	38.462	9.73	0.00	41.61	2.24
585	586	3.710326	TGGAGTGCGCTATGTTACTAG	57.290	47.619	9.73	0.00	0.00	2.57
589	590	3.603158	TTCTTGGAGTGCGCTATGTTA	57.397	42.857	9.73	0.00	0.00	2.41
593	594	2.991250	ACATTTCTTGGAGTGCGCTAT	58.009	42.857	9.73	0.00	0.00	2.97
596	597	2.053627	CAAACATTTCTTGGAGTGCGC	58.946	47.619	0.00	0.00	0.00	6.09
599	600	9.357652	CCATATAAACAAACATTTCTTGGAGTG	57.642	33.333	0.00	0.00	0.00	3.51
601	602	7.492344	GGCCATATAAACAAACATTTCTTGGAG	59.508	37.037	0.00	0.00	0.00	3.86
602	603	7.038729	TGGCCATATAAACAAACATTTCTTGGA	60.039	33.333	0.00	0.00	0.00	3.53
617	618	9.295825	CCTCACATTAAATACTGGCCATATAAA	57.704	33.333	5.51	5.78	0.00	1.40
622	623	4.889409	CACCTCACATTAAATACTGGCCAT	59.111	41.667	5.51	0.00	0.00	4.40
627	628	7.915293	TGTTACCACCTCACATTAAATACTG	57.085	36.000	0.00	0.00	0.00	2.74
639	640	5.242434	GTGACATGTTATGTTACCACCTCA	58.758	41.667	0.00	0.00	45.03	3.86
655	667	5.530519	AAGCGTTATGTTACAGTGACATG	57.469	39.130	18.89	5.73	38.17	3.21
660	672	5.178623	TCTTGGAAAGCGTTATGTTACAGTG	59.821	40.000	0.00	0.00	45.70	3.66
662	674	5.178623	TGTCTTGGAAAGCGTTATGTTACAG	59.821	40.000	0.00	0.00	45.70	2.74
672	684	3.070018	CTCATCTTGTCTTGGAAAGCGT	58.930	45.455	0.00	0.00	45.70	5.07
678	690	5.567623	GCTTGTAGACTCATCTTGTCTTGGA	60.568	44.000	1.67	0.00	41.45	3.53
680	692	5.233225	TGCTTGTAGACTCATCTTGTCTTG	58.767	41.667	1.67	0.00	41.45	3.02
681	693	5.474578	TGCTTGTAGACTCATCTTGTCTT	57.525	39.130	1.67	0.00	41.45	3.01
685	697	9.499585	CATTTATTTGCTTGTAGACTCATCTTG	57.500	33.333	0.00	0.00	36.29	3.02
688	700	9.495754	GTTCATTTATTTGCTTGTAGACTCATC	57.504	33.333	0.00	0.00	0.00	2.92
698	710	5.732633	TGGATGGGTTCATTTATTTGCTTG	58.267	37.500	0.00	0.00	32.98	4.01
702	714	6.757947	GTGTCATGGATGGGTTCATTTATTTG	59.242	38.462	0.00	0.00	32.98	2.32
703	715	6.669154	AGTGTCATGGATGGGTTCATTTATTT	59.331	34.615	0.00	0.00	32.98	1.40
714	726	5.485620	CATGATAGTAGTGTCATGGATGGG	58.514	45.833	23.00	3.39	44.54	4.00
754	766	8.842280	GCATGACACTAGTCTAAGTTACTATCT	58.158	37.037	0.00	0.00	45.20	1.98
810	822	1.003839	TTAAGGCTGGCTGGTCACG	60.004	57.895	3.84	0.00	0.00	4.35
811	823	0.036875	ACTTAAGGCTGGCTGGTCAC	59.963	55.000	3.84	0.00	0.00	3.67
826	838	8.080760	ATCCGGATAGAAGGAGAAGGAAACTTA	61.081	40.741	17.43	0.00	44.29	2.24
827	839	7.322767	ATCCGGATAGAAGGAGAAGGAAACTT	61.323	42.308	17.43	0.00	45.90	2.66
828	840	4.572223	TCCGGATAGAAGGAGAAGGAAACT	60.572	45.833	0.00	0.00	35.25	2.66
829	841	3.705072	TCCGGATAGAAGGAGAAGGAAAC	59.295	47.826	0.00	0.00	31.95	2.78
830	842	3.990369	TCCGGATAGAAGGAGAAGGAAA	58.010	45.455	0.00	0.00	31.95	3.13
831	843	3.682592	TCCGGATAGAAGGAGAAGGAA	57.317	47.619	0.00	0.00	31.95	3.36
832	844	3.501349	CATCCGGATAGAAGGAGAAGGA	58.499	50.000	18.63	0.00	40.26	3.36
833	845	2.564947	CCATCCGGATAGAAGGAGAAGG	59.435	54.545	18.63	6.16	40.26	3.46
834	846	3.501349	TCCATCCGGATAGAAGGAGAAG	58.499	50.000	18.63	0.00	40.26	2.85
835	847	3.612795	TCCATCCGGATAGAAGGAGAA	57.387	47.619	18.63	0.00	40.26	2.87
848	860	1.889105	CTGGTGCCGAATCCATCCG	60.889	63.158	0.00	0.00	33.01	4.18
849	861	0.109342	ATCTGGTGCCGAATCCATCC	59.891	55.000	0.00	0.00	33.01	3.51
850	862	1.233019	CATCTGGTGCCGAATCCATC	58.767	55.000	0.00	0.00	33.01	3.51
851	863	0.548031	ACATCTGGTGCCGAATCCAT	59.452	50.000	0.00	0.00	33.01	3.41
852	864	1.138859	CTACATCTGGTGCCGAATCCA	59.861	52.381	0.00	0.00	0.00	3.41
853	865	1.139058	ACTACATCTGGTGCCGAATCC	59.861	52.381	0.00	0.00	0.00	3.01
854	866	2.205074	CACTACATCTGGTGCCGAATC	58.795	52.381	0.00	0.00	0.00	2.52
855	867	2.315925	CACTACATCTGGTGCCGAAT	57.684	50.000	0.00	0.00	0.00	3.34
856	868	3.832704	CACTACATCTGGTGCCGAA	57.167	52.632	0.00	0.00	0.00	4.30
861	873	3.827008	ATGGTAGCACTACATCTGGTG	57.173	47.619	9.87	0.00	37.78	4.17
862	874	4.962995	AGTAATGGTAGCACTACATCTGGT	59.037	41.667	15.13	0.00	37.78	4.00
863	875	5.069119	TGAGTAATGGTAGCACTACATCTGG	59.931	44.000	15.13	0.00	37.78	3.86
864	876	6.149129	TGAGTAATGGTAGCACTACATCTG	57.851	41.667	15.13	0.00	37.78	2.90
865	877	6.985653	ATGAGTAATGGTAGCACTACATCT	57.014	37.500	15.13	0.00	37.78	2.90
866	878	8.361139	AGTAATGAGTAATGGTAGCACTACATC	58.639	37.037	15.13	10.05	37.78	3.06
867	879	8.251383	AGTAATGAGTAATGGTAGCACTACAT	57.749	34.615	15.13	6.28	37.78	2.29
868	880	7.655521	AGTAATGAGTAATGGTAGCACTACA	57.344	36.000	15.13	4.39	37.78	2.74
869	881	7.980099	ACAAGTAATGAGTAATGGTAGCACTAC	59.020	37.037	5.42	5.42	35.40	2.73
870	882	7.979537	CACAAGTAATGAGTAATGGTAGCACTA	59.020	37.037	0.00	0.00	0.00	2.74
871	883	6.818644	CACAAGTAATGAGTAATGGTAGCACT	59.181	38.462	0.00	0.00	0.00	4.40
872	884	6.037172	CCACAAGTAATGAGTAATGGTAGCAC	59.963	42.308	0.00	0.00	0.00	4.40
873	885	6.112734	CCACAAGTAATGAGTAATGGTAGCA	58.887	40.000	0.00	0.00	0.00	3.49
874	886	5.527582	CCCACAAGTAATGAGTAATGGTAGC	59.472	44.000	0.00	0.00	0.00	3.58
875	887	6.761714	GTCCCACAAGTAATGAGTAATGGTAG	59.238	42.308	0.00	0.00	0.00	3.18
876	888	6.352394	GGTCCCACAAGTAATGAGTAATGGTA	60.352	42.308	0.00	0.00	0.00	3.25
877	889	5.497474	GTCCCACAAGTAATGAGTAATGGT	58.503	41.667	0.00	0.00	0.00	3.55
878	890	4.881850	GGTCCCACAAGTAATGAGTAATGG	59.118	45.833	0.00	0.00	0.00	3.16
879	891	5.496556	TGGTCCCACAAGTAATGAGTAATG	58.503	41.667	0.00	0.00	0.00	1.90
880	892	5.772393	TGGTCCCACAAGTAATGAGTAAT	57.228	39.130	0.00	0.00	0.00	1.89
881	893	5.496556	CATGGTCCCACAAGTAATGAGTAA	58.503	41.667	0.00	0.00	0.00	2.24
882	894	4.625324	GCATGGTCCCACAAGTAATGAGTA	60.625	45.833	0.00	0.00	0.00	2.59
883	895	3.873801	GCATGGTCCCACAAGTAATGAGT	60.874	47.826	0.00	0.00	0.00	3.41
884	896	2.684881	GCATGGTCCCACAAGTAATGAG	59.315	50.000	0.00	0.00	0.00	2.90
885	897	2.620367	GGCATGGTCCCACAAGTAATGA	60.620	50.000	0.00	0.00	0.00	2.57
886	898	1.750778	GGCATGGTCCCACAAGTAATG	59.249	52.381	0.00	0.00	0.00	1.90
887	899	1.357420	TGGCATGGTCCCACAAGTAAT	59.643	47.619	0.00	0.00	0.00	1.89
888	900	0.774276	TGGCATGGTCCCACAAGTAA	59.226	50.000	0.00	0.00	0.00	2.24
889	901	0.774276	TTGGCATGGTCCCACAAGTA	59.226	50.000	0.00	0.00	30.65	2.24
890	902	0.540365	CTTGGCATGGTCCCACAAGT	60.540	55.000	0.00	0.00	35.15	3.16
891	903	0.251297	TCTTGGCATGGTCCCACAAG	60.251	55.000	8.23	8.23	39.76	3.16
892	904	0.539438	GTCTTGGCATGGTCCCACAA	60.539	55.000	0.00	0.00	30.65	3.33
893	905	1.074775	GTCTTGGCATGGTCCCACA	59.925	57.895	0.00	0.00	30.65	4.17
894	906	1.678970	GGTCTTGGCATGGTCCCAC	60.679	63.158	0.00	0.00	30.65	4.61
895	907	2.763215	GGTCTTGGCATGGTCCCA	59.237	61.111	0.00	0.00	0.00	4.37
896	908	2.043953	GGGTCTTGGCATGGTCCC	60.044	66.667	14.70	14.70	0.00	4.46
897	909	2.438434	CGGGTCTTGGCATGGTCC	60.438	66.667	0.00	4.19	0.00	4.46
898	910	3.134127	GCGGGTCTTGGCATGGTC	61.134	66.667	0.00	0.00	0.00	4.02
900	912	4.776322	TCGCGGGTCTTGGCATGG	62.776	66.667	6.13	0.00	0.00	3.66
901	913	3.499737	GTCGCGGGTCTTGGCATG	61.500	66.667	6.13	0.00	0.00	4.06
911	923	4.805231	TATGTGCCACGTCGCGGG	62.805	66.667	6.13	0.00	0.00	6.13
912	924	2.584970	ATATGTGCCACGTCGCGG	60.585	61.111	6.13	0.00	0.00	6.46
913	925	2.916556	CGATATGTGCCACGTCGCG	61.917	63.158	0.00	0.00	0.00	5.87
914	926	2.920869	CGATATGTGCCACGTCGC	59.079	61.111	0.00	0.00	0.00	5.19
915	927	1.417577	TTGCGATATGTGCCACGTCG	61.418	55.000	11.23	11.23	35.56	5.12
916	928	0.026285	GTTGCGATATGTGCCACGTC	59.974	55.000	0.00	0.00	0.00	4.34
917	929	1.366111	GGTTGCGATATGTGCCACGT	61.366	55.000	0.00	0.00	0.00	4.49
918	930	1.351707	GGTTGCGATATGTGCCACG	59.648	57.895	0.00	0.00	0.00	4.94
919	931	0.098728	GTGGTTGCGATATGTGCCAC	59.901	55.000	0.00	0.00	39.38	5.01
920	932	1.365368	CGTGGTTGCGATATGTGCCA	61.365	55.000	0.00	0.00	0.00	4.92
921	933	1.351707	CGTGGTTGCGATATGTGCC	59.648	57.895	0.00	0.00	0.00	5.01
922	934	1.351707	CCGTGGTTGCGATATGTGC	59.648	57.895	0.00	0.00	0.00	4.57
923	935	1.083489	AACCGTGGTTGCGATATGTG	58.917	50.000	2.89	0.00	36.91	3.21
924	936	2.676632	TAACCGTGGTTGCGATATGT	57.323	45.000	14.45	0.00	38.92	2.29
925	937	3.372822	AGTTTAACCGTGGTTGCGATATG	59.627	43.478	14.45	0.00	38.92	1.78
926	938	3.372822	CAGTTTAACCGTGGTTGCGATAT	59.627	43.478	14.45	0.00	38.92	1.63
927	939	2.737783	CAGTTTAACCGTGGTTGCGATA	59.262	45.455	14.45	0.00	38.92	2.92
928	940	1.533731	CAGTTTAACCGTGGTTGCGAT	59.466	47.619	14.45	0.00	38.92	4.58
929	941	0.938713	CAGTTTAACCGTGGTTGCGA	59.061	50.000	14.45	0.00	38.92	5.10
930	942	0.658897	ACAGTTTAACCGTGGTTGCG	59.341	50.000	14.45	1.22	38.92	4.85
931	943	1.862411	GCACAGTTTAACCGTGGTTGC	60.862	52.381	14.45	4.30	38.92	4.17
932	944	1.595976	CGCACAGTTTAACCGTGGTTG	60.596	52.381	14.45	0.35	38.92	3.77
933	945	0.658897	CGCACAGTTTAACCGTGGTT	59.341	50.000	12.58	9.57	41.65	3.67
934	946	0.462403	ACGCACAGTTTAACCGTGGT	60.462	50.000	12.58	6.66	0.00	4.16
935	947	0.233848	GACGCACAGTTTAACCGTGG	59.766	55.000	12.58	6.12	31.65	4.94
936	948	0.233848	GGACGCACAGTTTAACCGTG	59.766	55.000	7.06	7.06	31.65	4.94
937	949	0.881600	GGGACGCACAGTTTAACCGT	60.882	55.000	0.00	0.00	34.52	4.83
938	950	0.601841	AGGGACGCACAGTTTAACCG	60.602	55.000	0.00	0.00	0.00	4.44
939	951	2.460757	TAGGGACGCACAGTTTAACC	57.539	50.000	0.00	0.00	0.00	2.85
940	952	3.332034	ACATAGGGACGCACAGTTTAAC	58.668	45.455	0.00	0.00	0.00	2.01
941	953	3.007074	TGACATAGGGACGCACAGTTTAA	59.993	43.478	0.00	0.00	0.00	1.52
942	954	2.563620	TGACATAGGGACGCACAGTTTA	59.436	45.455	0.00	0.00	0.00	2.01
943	955	1.346395	TGACATAGGGACGCACAGTTT	59.654	47.619	0.00	0.00	0.00	2.66
944	956	0.973632	TGACATAGGGACGCACAGTT	59.026	50.000	0.00	0.00	0.00	3.16
945	957	1.134699	CATGACATAGGGACGCACAGT	60.135	52.381	0.00	0.00	0.00	3.55
946	958	1.575244	CATGACATAGGGACGCACAG	58.425	55.000	0.00	0.00	0.00	3.66
947	959	0.461870	GCATGACATAGGGACGCACA	60.462	55.000	0.00	0.00	0.00	4.57
948	960	0.179073	AGCATGACATAGGGACGCAC	60.179	55.000	0.00	0.00	0.00	5.34
949	961	0.541392	AAGCATGACATAGGGACGCA	59.459	50.000	0.00	0.00	0.00	5.24
950	962	0.940126	CAAGCATGACATAGGGACGC	59.060	55.000	0.00	0.00	0.00	5.19
951	963	0.940126	GCAAGCATGACATAGGGACG	59.060	55.000	0.00	0.00	0.00	4.79
952	964	1.945394	CTGCAAGCATGACATAGGGAC	59.055	52.381	0.00	0.00	0.00	4.46
953	965	1.839354	TCTGCAAGCATGACATAGGGA	59.161	47.619	0.00	0.00	0.00	4.20
954	966	2.219458	CTCTGCAAGCATGACATAGGG	58.781	52.381	0.00	0.00	0.00	3.53
966	978	3.140576	CAGGACTGAGCTCTGCAAG	57.859	57.895	19.49	8.77	0.00	4.01
970	982	1.134753	CTACTGCAGGACTGAGCTCTG	59.865	57.143	19.93	18.15	0.00	3.35
971	983	1.272425	ACTACTGCAGGACTGAGCTCT	60.272	52.381	19.93	0.00	0.00	4.09
972	984	1.135141	CACTACTGCAGGACTGAGCTC	60.135	57.143	19.93	6.82	0.00	4.09
973	985	0.894141	CACTACTGCAGGACTGAGCT	59.106	55.000	19.93	0.00	0.00	4.09
974	986	0.739112	GCACTACTGCAGGACTGAGC	60.739	60.000	19.93	10.29	43.62	4.26
975	987	3.432517	GCACTACTGCAGGACTGAG	57.567	57.895	19.93	9.23	43.62	3.35
993	1005	0.163788	CGCTCGTACTGCACCTTTTG	59.836	55.000	8.14	0.00	0.00	2.44
994	1006	1.566018	GCGCTCGTACTGCACCTTTT	61.566	55.000	0.00	0.00	0.00	2.27
995	1007	2.027625	GCGCTCGTACTGCACCTTT	61.028	57.895	0.00	0.00	0.00	3.11
996	1008	2.432628	GCGCTCGTACTGCACCTT	60.433	61.111	0.00	0.00	0.00	3.50
997	1009	4.436998	GGCGCTCGTACTGCACCT	62.437	66.667	7.64	0.00	30.65	4.00
1003	1015	3.569049	AAACAGCGGCGCTCGTACT	62.569	57.895	34.22	19.27	36.40	2.73
1033	1045	2.818132	GGCCATCTCCTCCTCGTG	59.182	66.667	0.00	0.00	0.00	4.35
1071	1086	2.682494	GACCACCTCCCCGCACTA	60.682	66.667	0.00	0.00	0.00	2.74
1182	1197	1.283321	GGAGGAAACCATCTGAAGCCT	59.717	52.381	0.00	0.00	0.00	4.58
1198	1213	1.377725	ATCAAGCGCCAACAGGAGG	60.378	57.895	2.29	0.00	0.00	4.30
1201	1216	0.447801	GTACATCAAGCGCCAACAGG	59.552	55.000	2.29	0.00	0.00	4.00
1202	1217	1.129251	CTGTACATCAAGCGCCAACAG	59.871	52.381	2.29	3.90	0.00	3.16
1203	1218	1.155889	CTGTACATCAAGCGCCAACA	58.844	50.000	2.29	0.00	0.00	3.33
1204	1219	0.447801	CCTGTACATCAAGCGCCAAC	59.552	55.000	2.29	0.00	0.00	3.77
1205	1220	1.305219	GCCTGTACATCAAGCGCCAA	61.305	55.000	2.29	0.00	0.00	4.52
1206	1221	1.745115	GCCTGTACATCAAGCGCCA	60.745	57.895	2.29	0.00	0.00	5.69
1207	1222	3.102097	GCCTGTACATCAAGCGCC	58.898	61.111	2.29	0.00	0.00	6.53
1434	1449	4.065088	GAGAAGATGTGGTGTGCTTTACA	58.935	43.478	0.00	0.00	36.82	2.41
1437	1452	2.508526	GGAGAAGATGTGGTGTGCTTT	58.491	47.619	0.00	0.00	0.00	3.51
1444	1459	1.280457	GACTGGGGAGAAGATGTGGT	58.720	55.000	0.00	0.00	0.00	4.16
1448	1463	1.690219	CGGGGACTGGGGAGAAGATG	61.690	65.000	0.00	0.00	0.00	2.90
1467	1482	2.031682	AGCAACAGATCGACAAAAGTGC	60.032	45.455	0.00	0.00	0.00	4.40
1471	1486	5.758296	AGAAGTTAGCAACAGATCGACAAAA	59.242	36.000	0.00	0.00	0.00	2.44
1492	1507	8.840200	AAGAAAGATAGGTACATACTCCAGAA	57.160	34.615	0.00	0.00	0.00	3.02
1493	1508	9.575868	CTAAGAAAGATAGGTACATACTCCAGA	57.424	37.037	0.00	0.00	0.00	3.86
1507	1522	7.884816	TTTGTGACGGAACTAAGAAAGATAG	57.115	36.000	0.00	0.00	0.00	2.08
1522	1654	1.386412	GCATGCGAAAATTTGTGACGG	59.614	47.619	0.00	0.00	0.00	4.79
1536	1668	1.164411	TACAGGAACCAAAGCATGCG	58.836	50.000	13.01	0.00	0.00	4.73
1542	1674	1.737793	GCCGACATACAGGAACCAAAG	59.262	52.381	0.00	0.00	0.00	2.77
1547	1679	1.337823	ACTGTGCCGACATACAGGAAC	60.338	52.381	8.95	0.00	46.52	3.62
1564	1698	7.281774	ACAAGTGGCATTCAAAGAGATATACTG	59.718	37.037	0.00	0.00	0.00	2.74
1585	1721	5.221722	ACTCAATCCACATCACACTACAAGT	60.222	40.000	0.00	0.00	0.00	3.16
1618	1757	4.332819	ACAGTATGCCGCACTTATCTTTTC	59.667	41.667	0.00	0.00	42.53	2.29
1619	1758	4.261801	ACAGTATGCCGCACTTATCTTTT	58.738	39.130	0.00	0.00	42.53	2.27
1632	1771	1.269309	CGGCTACAGAGACAGTATGCC	60.269	57.143	0.00	0.00	42.53	4.40
1707	1846	2.655090	TGACCATGAACCAAGAGCAA	57.345	45.000	0.00	0.00	0.00	3.91
1710	1852	3.688185	CACTCATGACCATGAACCAAGAG	59.312	47.826	13.02	3.71	46.10	2.85
1834	1976	4.465632	TCGGTTCTGCTACAACATGTAT	57.534	40.909	0.00	0.00	31.66	2.29
1913	3563	5.407387	GGCACGACAAATCTAAGACAAGTAA	59.593	40.000	0.00	0.00	0.00	2.24
1914	3564	4.927425	GGCACGACAAATCTAAGACAAGTA	59.073	41.667	0.00	0.00	0.00	2.24
1915	3565	3.746492	GGCACGACAAATCTAAGACAAGT	59.254	43.478	0.00	0.00	0.00	3.16
1916	3566	3.997021	AGGCACGACAAATCTAAGACAAG	59.003	43.478	0.00	0.00	0.00	3.16
1917	3567	4.002906	AGGCACGACAAATCTAAGACAA	57.997	40.909	0.00	0.00	0.00	3.18
1918	3568	3.678056	AGGCACGACAAATCTAAGACA	57.322	42.857	0.00	0.00	0.00	3.41
1919	3569	4.995124	TCTAGGCACGACAAATCTAAGAC	58.005	43.478	0.00	0.00	0.00	3.01
1920	3570	5.854010	ATCTAGGCACGACAAATCTAAGA	57.146	39.130	0.00	0.00	0.00	2.10
1921	3571	9.509855	GATATATCTAGGCACGACAAATCTAAG	57.490	37.037	5.42	0.00	0.00	2.18
1922	3572	8.467598	GGATATATCTAGGCACGACAAATCTAA	58.532	37.037	12.42	0.00	0.00	2.10
1924	3574	6.404844	CGGATATATCTAGGCACGACAAATCT	60.405	42.308	12.42	0.00	0.00	2.40
1925	3575	5.744345	CGGATATATCTAGGCACGACAAATC	59.256	44.000	12.42	0.00	0.00	2.17
1926	3576	5.185249	ACGGATATATCTAGGCACGACAAAT	59.815	40.000	12.42	0.00	0.00	2.32
1927	3577	4.521639	ACGGATATATCTAGGCACGACAAA	59.478	41.667	12.42	0.00	0.00	2.83
1928	3578	4.077108	ACGGATATATCTAGGCACGACAA	58.923	43.478	12.42	0.00	0.00	3.18
1929	3579	3.682696	ACGGATATATCTAGGCACGACA	58.317	45.455	12.42	0.00	0.00	4.35
1930	3580	5.759273	AGATACGGATATATCTAGGCACGAC	59.241	44.000	12.42	4.73	39.63	4.34
1971	3626	3.851458	ATTACCTCCGTCCCAAATACC	57.149	47.619	0.00	0.00	0.00	2.73
2047	3703	5.300792	TCAGTGGTTGGTTTTCTATGGTTTC	59.699	40.000	0.00	0.00	0.00	2.78
2247	3903	2.348666	GCATAGCAGACCAACAGTTACG	59.651	50.000	0.00	0.00	0.00	3.18
2302	3958	3.181507	CGCCACAAGAACGATCATTGATT	60.182	43.478	0.00	0.00	0.00	2.57
2390	4053	6.500684	TGGAGCAACAGAATTGATTCTTAC	57.499	37.500	3.54	0.00	44.28	2.34
2612	4280	7.905604	TGGAACAATGTCTCTGTGTTTATAG	57.094	36.000	0.00	0.00	35.67	1.31
2630	4298	4.463539	CCATGAAAAGTGATGGATGGAACA	59.536	41.667	0.00	0.00	41.63	3.18
2631	4299	4.678840	GCCATGAAAAGTGATGGATGGAAC	60.679	45.833	0.00	0.00	41.63	3.62
2632	4300	3.448301	GCCATGAAAAGTGATGGATGGAA	59.552	43.478	0.00	0.00	41.63	3.53
2634	4302	3.028850	AGCCATGAAAAGTGATGGATGG	58.971	45.455	0.00	0.00	41.63	3.51
2635	4303	4.430007	CAAGCCATGAAAAGTGATGGATG	58.570	43.478	0.00	0.00	41.63	3.51
2636	4304	3.118884	GCAAGCCATGAAAAGTGATGGAT	60.119	43.478	0.00	0.00	41.63	3.41
2638	4306	2.028839	TGCAAGCCATGAAAAGTGATGG	60.029	45.455	0.00	0.00	41.95	3.51
2639	4307	3.250744	CTGCAAGCCATGAAAAGTGATG	58.749	45.455	0.00	0.00	0.00	3.07
2674	4365	8.280497	GTCTTACATTAGTGTACAAAGGTTGTG	58.720	37.037	0.00	0.00	45.03	3.33
2725	4572	7.650104	TGTAAACTAATGTAAGCCAGTTTTTGC	59.350	33.333	4.12	0.00	40.63	3.68
2726	4573	9.180678	CTGTAAACTAATGTAAGCCAGTTTTTG	57.819	33.333	4.12	0.00	40.63	2.44
2727	4574	9.127277	TCTGTAAACTAATGTAAGCCAGTTTTT	57.873	29.630	4.12	0.00	40.63	1.94
2732	4579	5.817816	CCCTCTGTAAACTAATGTAAGCCAG	59.182	44.000	0.00	0.00	0.00	4.85
2735	4582	6.641474	ACTCCCTCTGTAAACTAATGTAAGC	58.359	40.000	0.00	0.00	0.00	3.09
3253	5127	2.224606	CAACATCTGTTCTGGCACTGT	58.775	47.619	0.00	0.00	35.83	3.55
3629	5504	1.897423	CACTCCACGATGGCACCTA	59.103	57.895	0.00	0.00	37.47	3.08
3764	5639	1.394917	CTCAACCATAGTGTCGCTTGC	59.605	52.381	0.00	0.00	0.00	4.01
3806	5681	0.035725	CAGCTGCCCTGTGATCAAGA	60.036	55.000	0.00	0.00	36.79	3.02
4358	6244	3.812262	TGAGCATCATCCACGATTTCAT	58.188	40.909	0.00	0.00	42.56	2.57
4359	6245	3.264998	TGAGCATCATCCACGATTTCA	57.735	42.857	0.00	0.00	42.56	2.69
4454	6340	2.472029	GATCCCAGGAAGAGACCTTGA	58.528	52.381	0.00	0.00	38.32	3.02
5039	6928	0.806102	CGGACACGGATGATCCACAC	60.806	60.000	12.67	0.00	35.91	3.82
5040	6929	1.254975	ACGGACACGGATGATCCACA	61.255	55.000	12.67	0.00	46.48	4.17
5086	6992	9.665719	ACATACACATACAGATTGTACATCAAA	57.334	29.630	0.00	0.00	39.62	2.69
5115	7021	6.812160	ACGACTTACATTTAGCTAAAGTGGAG	59.188	38.462	22.55	20.15	32.37	3.86
5164	10405	0.958099	CGCGTCGTGTTTCAAAATCG	59.042	50.000	0.00	0.00	0.00	3.34
5188	10432	0.827925	CCACTATCTGCGGCCTAGGA	60.828	60.000	14.75	0.00	0.00	2.94
5191	10435	2.856628	CGCCACTATCTGCGGCCTA	61.857	63.158	0.00	0.00	46.65	3.93
5217	10462	1.045350	TCTCAGCCCTCGCTATGCTT	61.045	55.000	0.00	0.00	46.25	3.91
5241	10486	2.669569	TTGACAGAGGCCTTGCGC	60.670	61.111	6.77	0.00	0.00	6.09
5286	10531	7.968405	GCCATTATCGTAATTGTTTCTTGAGTT	59.032	33.333	0.00	0.00	0.00	3.01
5287	10532	7.120579	TGCCATTATCGTAATTGTTTCTTGAGT	59.879	33.333	0.00	0.00	0.00	3.41
5288	10533	7.471721	TGCCATTATCGTAATTGTTTCTTGAG	58.528	34.615	0.00	0.00	0.00	3.02
5289	10534	7.384439	TGCCATTATCGTAATTGTTTCTTGA	57.616	32.000	0.00	0.00	0.00	3.02
5290	10535	8.533965	CAATGCCATTATCGTAATTGTTTCTTG	58.466	33.333	0.00	0.00	0.00	3.02
5291	10536	8.465999	TCAATGCCATTATCGTAATTGTTTCTT	58.534	29.630	0.00	0.00	0.00	2.52
5292	10537	7.915397	GTCAATGCCATTATCGTAATTGTTTCT	59.085	33.333	0.00	0.00	0.00	2.52
5293	10538	7.700234	TGTCAATGCCATTATCGTAATTGTTTC	59.300	33.333	0.00	0.00	0.00	2.78
5294	10539	7.542890	TGTCAATGCCATTATCGTAATTGTTT	58.457	30.769	0.00	0.00	0.00	2.83
5295	10540	7.094508	TGTCAATGCCATTATCGTAATTGTT	57.905	32.000	0.00	0.00	0.00	2.83
5296	10541	6.691754	TGTCAATGCCATTATCGTAATTGT	57.308	33.333	0.00	0.00	0.00	2.71
5297	10542	7.701924	ACTTTGTCAATGCCATTATCGTAATTG	59.298	33.333	0.00	0.00	0.00	2.32
5298	10543	7.771183	ACTTTGTCAATGCCATTATCGTAATT	58.229	30.769	0.00	0.00	0.00	1.40
5299	10544	7.333528	ACTTTGTCAATGCCATTATCGTAAT	57.666	32.000	0.00	0.00	0.00	1.89
5300	10545	6.751514	ACTTTGTCAATGCCATTATCGTAA	57.248	33.333	0.00	0.00	0.00	3.18
5301	10546	6.751514	AACTTTGTCAATGCCATTATCGTA	57.248	33.333	0.00	0.00	0.00	3.43
5302	10547	5.643379	AACTTTGTCAATGCCATTATCGT	57.357	34.783	0.00	0.00	0.00	3.73
5303	10548	6.688385	CAGTAACTTTGTCAATGCCATTATCG	59.312	38.462	0.00	0.00	0.00	2.92
5304	10549	7.761409	TCAGTAACTTTGTCAATGCCATTATC	58.239	34.615	0.00	0.00	0.00	1.75
5305	10550	7.701539	TCAGTAACTTTGTCAATGCCATTAT	57.298	32.000	0.00	0.00	0.00	1.28
5306	10551	7.701539	ATCAGTAACTTTGTCAATGCCATTA	57.298	32.000	0.00	0.00	0.00	1.90
5307	10552	6.594788	ATCAGTAACTTTGTCAATGCCATT	57.405	33.333	0.00	0.00	0.00	3.16
5308	10553	6.594788	AATCAGTAACTTTGTCAATGCCAT	57.405	33.333	0.00	0.00	0.00	4.40
5309	10554	6.488344	TGTAATCAGTAACTTTGTCAATGCCA	59.512	34.615	0.00	0.00	0.00	4.92
5310	10555	6.908825	TGTAATCAGTAACTTTGTCAATGCC	58.091	36.000	0.00	0.00	0.00	4.40
5311	10556	8.690840	GTTTGTAATCAGTAACTTTGTCAATGC	58.309	33.333	0.00	0.00	0.00	3.56
5312	10557	9.180678	GGTTTGTAATCAGTAACTTTGTCAATG	57.819	33.333	0.00	0.00	0.00	2.82
5313	10558	8.073768	CGGTTTGTAATCAGTAACTTTGTCAAT	58.926	33.333	0.00	0.00	0.00	2.57
5314	10559	7.280428	TCGGTTTGTAATCAGTAACTTTGTCAA	59.720	33.333	0.00	0.00	0.00	3.18
5315	10560	6.762187	TCGGTTTGTAATCAGTAACTTTGTCA	59.238	34.615	0.00	0.00	0.00	3.58
5316	10561	7.181143	TCGGTTTGTAATCAGTAACTTTGTC	57.819	36.000	0.00	0.00	0.00	3.18
5317	10562	6.293244	GCTCGGTTTGTAATCAGTAACTTTGT	60.293	38.462	0.00	0.00	0.00	2.83
5318	10563	6.077838	GCTCGGTTTGTAATCAGTAACTTTG	58.922	40.000	0.00	0.00	0.00	2.77
5319	10564	5.761234	TGCTCGGTTTGTAATCAGTAACTTT	59.239	36.000	0.00	0.00	0.00	2.66
5320	10565	5.302360	TGCTCGGTTTGTAATCAGTAACTT	58.698	37.500	0.00	0.00	0.00	2.66
5321	10566	4.890088	TGCTCGGTTTGTAATCAGTAACT	58.110	39.130	0.00	0.00	0.00	2.24
5322	10567	5.600908	TTGCTCGGTTTGTAATCAGTAAC	57.399	39.130	0.00	0.00	0.00	2.50
5323	10568	4.153475	GCTTGCTCGGTTTGTAATCAGTAA	59.847	41.667	0.00	0.00	0.00	2.24
5324	10569	3.682858	GCTTGCTCGGTTTGTAATCAGTA	59.317	43.478	0.00	0.00	0.00	2.74
5325	10570	2.484264	GCTTGCTCGGTTTGTAATCAGT	59.516	45.455	0.00	0.00	0.00	3.41
5326	10571	2.483877	TGCTTGCTCGGTTTGTAATCAG	59.516	45.455	0.00	0.00	0.00	2.90
5327	10572	2.499197	TGCTTGCTCGGTTTGTAATCA	58.501	42.857	0.00	0.00	0.00	2.57
5328	10573	3.119849	ACATGCTTGCTCGGTTTGTAATC	60.120	43.478	0.00	0.00	0.00	1.75
5329	10574	2.819608	ACATGCTTGCTCGGTTTGTAAT	59.180	40.909	0.00	0.00	0.00	1.89
5330	10575	2.226330	ACATGCTTGCTCGGTTTGTAA	58.774	42.857	0.00	0.00	0.00	2.41
5331	10576	1.890876	ACATGCTTGCTCGGTTTGTA	58.109	45.000	0.00	0.00	0.00	2.41
5332	10577	1.535462	GTACATGCTTGCTCGGTTTGT	59.465	47.619	0.00	0.00	0.00	2.83
5333	10578	1.806542	AGTACATGCTTGCTCGGTTTG	59.193	47.619	0.00	0.00	0.00	2.93
5334	10579	2.185004	AGTACATGCTTGCTCGGTTT	57.815	45.000	0.00	0.00	0.00	3.27
5335	10580	2.028476	TGTAGTACATGCTTGCTCGGTT	60.028	45.455	0.00	0.00	0.00	4.44
5336	10581	1.548719	TGTAGTACATGCTTGCTCGGT	59.451	47.619	0.00	0.00	0.00	4.69
5337	10582	1.927174	GTGTAGTACATGCTTGCTCGG	59.073	52.381	6.21	0.00	0.00	4.63
5338	10583	2.606108	TGTGTAGTACATGCTTGCTCG	58.394	47.619	6.21	0.00	33.42	5.03
5364	10609	8.982091	ACTAGCTATGTGTGTAGATCTTTCTA	57.018	34.615	0.00	0.00	33.17	2.10
5365	10610	7.889873	ACTAGCTATGTGTGTAGATCTTTCT	57.110	36.000	0.00	0.00	35.90	2.52
5366	10611	8.842280	AGTACTAGCTATGTGTGTAGATCTTTC	58.158	37.037	0.00	0.00	0.00	2.62
5367	10612	8.754991	AGTACTAGCTATGTGTGTAGATCTTT	57.245	34.615	0.00	0.00	0.00	2.52
5368	10613	9.496873	CTAGTACTAGCTATGTGTGTAGATCTT	57.503	37.037	16.77	0.00	0.00	2.40
5369	10614	8.653191	ACTAGTACTAGCTATGTGTGTAGATCT	58.347	37.037	26.54	0.00	36.66	2.75
5370	10615	8.836268	ACTAGTACTAGCTATGTGTGTAGATC	57.164	38.462	26.54	0.00	36.66	2.75
5371	10616	9.932207	CTACTAGTACTAGCTATGTGTGTAGAT	57.068	37.037	26.54	7.34	36.66	1.98
5372	10617	9.140874	TCTACTAGTACTAGCTATGTGTGTAGA	57.859	37.037	26.54	19.43	36.66	2.59
5373	10618	9.761504	TTCTACTAGTACTAGCTATGTGTGTAG	57.238	37.037	26.54	17.81	36.66	2.74
5375	10620	8.891720	GTTTCTACTAGTACTAGCTATGTGTGT	58.108	37.037	26.54	9.77	36.66	3.72
5376	10621	8.890718	TGTTTCTACTAGTACTAGCTATGTGTG	58.109	37.037	26.54	10.10	36.66	3.82
5377	10622	9.629878	ATGTTTCTACTAGTACTAGCTATGTGT	57.370	33.333	26.54	11.09	36.66	3.72
5411	10656	8.997621	TTTCTGTTTTACCAGTACTAGCTATG	57.002	34.615	0.00	0.00	34.02	2.23
5492	10737	3.454587	TTCTGTTGTCACCGCCGCT	62.455	57.895	0.00	0.00	0.00	5.52
5505	10753	3.614399	CCGACAAGAAGGCTTCTGT	57.386	52.632	29.19	25.70	40.59	3.41
5604	10882	1.803519	GCTCGCCTCTGTTCGTCTG	60.804	63.158	0.00	0.00	0.00	3.51
5653	10931	1.384502	CCTGTATGGGAGAGGGGCA	60.385	63.158	0.00	0.00	34.80	5.36
5711	10990	1.504359	CATTCACCACGTACACGGTT	58.496	50.000	6.72	0.00	44.95	4.44
5759	11047	1.821759	CCACGCCCACTGTTGTTCA	60.822	57.895	0.00	0.00	0.00	3.18
5764	11052	2.594592	GCTTCCACGCCCACTGTT	60.595	61.111	0.00	0.00	0.00	3.16
5780	11069	1.720316	CGAATCAGATCGCATCTCTGC	59.280	52.381	3.01	0.00	45.31	4.26
5798	11096	1.135527	CTAACCCTAACCGTCATGCGA	59.864	52.381	10.48	0.00	44.77	5.10
5799	11097	1.567504	CTAACCCTAACCGTCATGCG	58.432	55.000	3.02	3.02	40.95	4.73
5800	11098	1.483415	TCCTAACCCTAACCGTCATGC	59.517	52.381	0.00	0.00	0.00	4.06
5885	11233	2.503061	CTGGGCCACGATCTGAGG	59.497	66.667	0.00	0.00	0.00	3.86
5919	11269	4.558496	CGCTTATTTTTGCCAGTCAGGAAA	60.558	41.667	0.00	0.00	41.22	3.13
5922	11272	2.867429	CGCTTATTTTTGCCAGTCAGG	58.133	47.619	0.00	0.00	41.84	3.86
6111	11544	2.910977	GGGTTATATGGGACTAGGGGTG	59.089	54.545	0.00	0.00	0.00	4.61
6114	11547	3.593942	TGTGGGTTATATGGGACTAGGG	58.406	50.000	0.00	0.00	0.00	3.53
6121	11554	2.555227	GGGCTCATGTGGGTTATATGGG	60.555	54.545	0.00	0.00	31.96	4.00

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.