Multiple sequence alignment - TraesCS4B01G209600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G209600 chr4B 100.000 3395 0 0 1 3395 447364228 447367622 0.000000e+00 6270.0
1 TraesCS4B01G209600 chr4D 92.578 2614 94 26 109 2662 361977989 361980562 0.000000e+00 3661.0
2 TraesCS4B01G209600 chr4D 94.332 494 27 1 2649 3141 361980582 361981075 0.000000e+00 756.0
3 TraesCS4B01G209600 chr4D 88.525 61 7 0 41 101 28887786 28887726 1.310000e-09 75.0
4 TraesCS4B01G209600 chr4A 91.308 2301 105 23 616 2829 103333572 103331280 0.000000e+00 3053.0
5 TraesCS4B01G209600 chr4A 88.851 296 24 6 2854 3140 103324017 103323722 4.170000e-94 355.0
6 TraesCS4B01G209600 chr4A 81.959 388 38 16 2742 3105 424387362 424386983 1.980000e-77 300.0
7 TraesCS4B01G209600 chr4A 90.640 203 9 3 354 555 103333782 103333589 9.340000e-66 261.0
8 TraesCS4B01G209600 chr4A 82.490 257 36 5 2490 2741 424387670 424387418 2.050000e-52 217.0
9 TraesCS4B01G209600 chr4A 81.188 101 16 3 5 103 638247522 638247423 1.010000e-10 78.7
10 TraesCS4B01G209600 chr6B 94.159 428 17 1 319 746 546430098 546430517 0.000000e+00 645.0
11 TraesCS4B01G209600 chr6B 98.425 254 4 0 3142 3395 42194848 42194595 6.680000e-122 448.0
12 TraesCS4B01G209600 chr6B 84.848 66 9 1 41 105 256903881 256903946 7.860000e-07 65.8
13 TraesCS4B01G209600 chr1B 98.828 256 3 0 3140 3395 162030343 162030598 1.110000e-124 457.0
14 TraesCS4B01G209600 chr1B 97.647 255 5 1 3142 3395 686693387 686693133 1.450000e-118 436.0
15 TraesCS4B01G209600 chr3B 98.425 254 4 0 3142 3395 726350500 726350753 6.680000e-122 448.0
16 TraesCS4B01G209600 chr2B 98.425 254 4 0 3142 3395 780111313 780111060 6.680000e-122 448.0
17 TraesCS4B01G209600 chr2B 77.253 233 33 12 1184 1397 653446685 653446454 5.950000e-23 119.0
18 TraesCS4B01G209600 chr5B 98.031 254 5 0 3142 3395 511723120 511722867 3.110000e-120 442.0
19 TraesCS4B01G209600 chr5B 97.255 255 6 1 3142 3395 706390686 706390940 6.730000e-117 431.0
20 TraesCS4B01G209600 chrUn 97.255 255 7 0 3141 3395 71274765 71274511 1.870000e-117 433.0
21 TraesCS4B01G209600 chrUn 97.266 256 6 1 3141 3395 222078231 222077976 1.870000e-117 433.0
22 TraesCS4B01G209600 chr5A 86.559 372 36 9 2742 3105 28845975 28846340 6.830000e-107 398.0
23 TraesCS4B01G209600 chr5A 84.047 257 32 4 2490 2741 28845667 28845919 4.380000e-59 239.0
24 TraesCS4B01G209600 chr5A 89.474 57 6 0 45 101 608348023 608347967 4.700000e-09 73.1
25 TraesCS4B01G209600 chr2D 80.172 232 28 10 1184 1397 546734645 546734414 1.260000e-34 158.0
26 TraesCS4B01G209600 chr6D 86.486 74 10 0 32 105 144107936 144108009 7.810000e-12 82.4
27 TraesCS4B01G209600 chr3A 81.553 103 16 2 2 101 425283256 425283358 7.810000e-12 82.4
28 TraesCS4B01G209600 chr5D 95.349 43 2 0 61 103 322032837 322032795 6.080000e-08 69.4
29 TraesCS4B01G209600 chr7D 87.097 62 5 1 43 104 478369800 478369858 2.190000e-07 67.6
30 TraesCS4B01G209600 chr6A 80.682 88 14 3 2 87 181591668 181591582 7.860000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G209600 chr4B 447364228 447367622 3394 False 6270.0 6270 100.0000 1 3395 1 chr4B.!!$F1 3394
1 TraesCS4B01G209600 chr4D 361977989 361981075 3086 False 2208.5 3661 93.4550 109 3141 2 chr4D.!!$F1 3032
2 TraesCS4B01G209600 chr4A 103331280 103333782 2502 True 1657.0 3053 90.9740 354 2829 2 chr4A.!!$R3 2475
3 TraesCS4B01G209600 chr4A 424386983 424387670 687 True 258.5 300 82.2245 2490 3105 2 chr4A.!!$R4 615
4 TraesCS4B01G209600 chr5A 28845667 28846340 673 False 318.5 398 85.3030 2490 3105 2 chr5A.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 534 0.034059 CAGACCGCACTGAACTTCCT 59.966 55.0 0.0 0.0 39.94 3.36 F
1759 1854 0.463833 GGGATTGCCACCTCCGTTAG 60.464 60.0 0.0 0.0 35.15 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 1967 0.244721 TGAGTGGCTCTGACGATGTG 59.755 55.0 0.0 0.0 0.00 3.21 R
3315 3545 0.029567 CCGACATACGCTCCAGTCTC 59.970 60.0 0.0 0.0 41.07 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.504384 GATGACGTCCATCGCATTCG 59.496 55.000 14.12 0.00 41.88 3.34
29 30 1.490693 ATGACGTCCATCGCATTCGC 61.491 55.000 14.12 0.00 44.19 4.70
30 31 1.878522 GACGTCCATCGCATTCGCT 60.879 57.895 3.51 0.00 44.19 4.93
31 32 1.421410 GACGTCCATCGCATTCGCTT 61.421 55.000 3.51 0.00 44.19 4.68
32 33 1.273887 CGTCCATCGCATTCGCTTC 59.726 57.895 0.00 0.00 35.30 3.86
33 34 1.273887 GTCCATCGCATTCGCTTCG 59.726 57.895 0.00 0.00 35.30 3.79
34 35 1.882625 TCCATCGCATTCGCTTCGG 60.883 57.895 0.00 0.00 35.30 4.30
35 36 2.052766 CATCGCATTCGCTTCGGC 60.053 61.111 0.00 0.00 35.30 5.54
45 46 3.733960 GCTTCGGCGGTTTGGTCC 61.734 66.667 7.21 0.00 0.00 4.46
46 47 3.053896 CTTCGGCGGTTTGGTCCC 61.054 66.667 7.21 0.00 0.00 4.46
47 48 4.646877 TTCGGCGGTTTGGTCCCC 62.647 66.667 7.21 0.00 0.00 4.81
49 50 3.708544 CGGCGGTTTGGTCCCCTA 61.709 66.667 0.00 0.00 0.00 3.53
50 51 3.004090 GGCGGTTTGGTCCCCTAT 58.996 61.111 0.00 0.00 0.00 2.57
51 52 1.153025 GGCGGTTTGGTCCCCTATC 60.153 63.158 0.00 0.00 0.00 2.08
52 53 1.153025 GCGGTTTGGTCCCCTATCC 60.153 63.158 0.00 0.00 0.00 2.59
53 54 1.145377 CGGTTTGGTCCCCTATCCG 59.855 63.158 1.01 1.01 35.94 4.18
54 55 1.619807 CGGTTTGGTCCCCTATCCGT 61.620 60.000 6.19 0.00 37.04 4.69
55 56 0.107361 GGTTTGGTCCCCTATCCGTG 60.107 60.000 0.00 0.00 0.00 4.94
56 57 0.906775 GTTTGGTCCCCTATCCGTGA 59.093 55.000 0.00 0.00 0.00 4.35
57 58 1.279846 GTTTGGTCCCCTATCCGTGAA 59.720 52.381 0.00 0.00 0.00 3.18
58 59 0.906775 TTGGTCCCCTATCCGTGAAC 59.093 55.000 0.00 0.00 0.00 3.18
59 60 1.324740 TGGTCCCCTATCCGTGAACG 61.325 60.000 0.00 0.00 39.44 3.95
69 70 2.885644 CGTGAACGGATGCGGGAG 60.886 66.667 12.44 0.00 35.37 4.30
70 71 2.577059 GTGAACGGATGCGGGAGA 59.423 61.111 12.44 0.00 0.00 3.71
71 72 1.079405 GTGAACGGATGCGGGAGAA 60.079 57.895 12.44 0.00 0.00 2.87
72 73 0.672401 GTGAACGGATGCGGGAGAAA 60.672 55.000 12.44 0.00 0.00 2.52
73 74 0.035598 TGAACGGATGCGGGAGAAAA 59.964 50.000 12.44 0.00 0.00 2.29
74 75 1.339631 TGAACGGATGCGGGAGAAAAT 60.340 47.619 12.44 0.00 0.00 1.82
75 76 1.743394 GAACGGATGCGGGAGAAAATT 59.257 47.619 12.44 0.00 0.00 1.82
76 77 1.834188 ACGGATGCGGGAGAAAATTT 58.166 45.000 12.44 0.00 0.00 1.82
77 78 2.993937 ACGGATGCGGGAGAAAATTTA 58.006 42.857 12.44 0.00 0.00 1.40
78 79 2.681344 ACGGATGCGGGAGAAAATTTAC 59.319 45.455 12.44 0.00 0.00 2.01
79 80 2.286184 CGGATGCGGGAGAAAATTTACG 60.286 50.000 0.00 0.00 0.00 3.18
80 81 2.032924 GGATGCGGGAGAAAATTTACGG 59.967 50.000 0.00 0.00 0.00 4.02
81 82 1.455248 TGCGGGAGAAAATTTACGGG 58.545 50.000 0.00 0.00 0.00 5.28
82 83 1.271488 TGCGGGAGAAAATTTACGGGT 60.271 47.619 0.00 0.00 0.00 5.28
83 84 1.814394 GCGGGAGAAAATTTACGGGTT 59.186 47.619 0.00 0.00 0.00 4.11
84 85 2.414957 GCGGGAGAAAATTTACGGGTTG 60.415 50.000 0.00 0.00 0.00 3.77
85 86 2.414957 CGGGAGAAAATTTACGGGTTGC 60.415 50.000 0.00 0.00 0.00 4.17
86 87 2.094390 GGGAGAAAATTTACGGGTTGCC 60.094 50.000 0.00 0.00 0.00 4.52
87 88 2.414957 GGAGAAAATTTACGGGTTGCCG 60.415 50.000 0.00 0.00 39.31 5.69
89 90 2.624364 AGAAAATTTACGGGTTGCCGTT 59.376 40.909 0.00 0.00 44.38 4.44
90 91 2.425578 AAATTTACGGGTTGCCGTTG 57.574 45.000 0.00 0.00 44.38 4.10
91 92 0.599060 AATTTACGGGTTGCCGTTGG 59.401 50.000 0.00 0.00 44.38 3.77
92 93 0.250814 ATTTACGGGTTGCCGTTGGA 60.251 50.000 0.00 0.00 44.38 3.53
93 94 0.885596 TTTACGGGTTGCCGTTGGAG 60.886 55.000 0.00 0.00 44.38 3.86
94 95 1.756408 TTACGGGTTGCCGTTGGAGA 61.756 55.000 0.00 0.00 44.38 3.71
95 96 2.162338 TACGGGTTGCCGTTGGAGAG 62.162 60.000 0.00 0.00 44.38 3.20
96 97 2.359975 GGGTTGCCGTTGGAGAGG 60.360 66.667 0.00 0.00 0.00 3.69
102 103 3.721868 CCGTTGGAGAGGCCCTAA 58.278 61.111 0.00 0.00 34.97 2.69
103 104 1.221021 CCGTTGGAGAGGCCCTAAC 59.779 63.158 0.00 0.00 34.97 2.34
104 105 1.221021 CGTTGGAGAGGCCCTAACC 59.779 63.158 0.00 0.00 34.97 2.85
105 106 1.265454 CGTTGGAGAGGCCCTAACCT 61.265 60.000 0.00 0.00 45.04 3.50
106 107 0.253327 GTTGGAGAGGCCCTAACCTG 59.747 60.000 0.00 0.00 41.32 4.00
107 108 0.178873 TTGGAGAGGCCCTAACCTGT 60.179 55.000 0.00 0.00 41.32 4.00
110 111 1.276622 GAGAGGCCCTAACCTGTCAA 58.723 55.000 0.00 0.00 46.77 3.18
114 115 2.239907 GAGGCCCTAACCTGTCAATCTT 59.760 50.000 0.00 0.00 41.32 2.40
116 117 1.745653 GCCCTAACCTGTCAATCTTGC 59.254 52.381 0.00 0.00 0.00 4.01
122 123 1.271597 ACCTGTCAATCTTGCCACTCC 60.272 52.381 0.00 0.00 0.00 3.85
135 136 1.369091 CCACTCCTGCCGTATTGTGC 61.369 60.000 0.00 0.00 0.00 4.57
164 165 3.248602 CAGGCAGGTTACTATCAAATCGC 59.751 47.826 0.00 0.00 0.00 4.58
168 169 4.570772 GCAGGTTACTATCAAATCGCTGAA 59.429 41.667 0.00 0.00 0.00 3.02
196 197 1.818060 TCCTGGTGGCAATTCAAATCG 59.182 47.619 0.00 0.00 0.00 3.34
222 223 3.179265 CGAGCACTTACCGTGGCG 61.179 66.667 0.00 0.00 43.97 5.69
237 256 2.511600 GCGGTAGCGTTCCAGCAT 60.512 61.111 16.63 0.00 40.15 3.79
240 259 0.802494 CGGTAGCGTTCCAGCATTTT 59.198 50.000 6.07 0.00 40.15 1.82
291 311 5.471257 AGAAAAAGACGTACAGAAGGCTAG 58.529 41.667 0.00 0.00 0.00 3.42
297 317 1.202582 CGTACAGAAGGCTAGCACAGT 59.797 52.381 18.24 12.13 0.00 3.55
321 341 3.178539 GCTGTAGCAAAGCGGGTC 58.821 61.111 0.00 0.00 41.59 4.46
322 342 2.399356 GCTGTAGCAAAGCGGGTCC 61.399 63.158 0.00 0.00 41.59 4.46
323 343 1.745489 CTGTAGCAAAGCGGGTCCC 60.745 63.158 0.00 0.00 0.00 4.46
324 344 2.437895 GTAGCAAAGCGGGTCCCC 60.438 66.667 1.00 0.00 0.00 4.81
325 345 2.609610 TAGCAAAGCGGGTCCCCT 60.610 61.111 1.00 0.00 0.00 4.79
326 346 2.228480 TAGCAAAGCGGGTCCCCTT 61.228 57.895 1.00 4.03 0.00 3.95
327 347 2.193087 TAGCAAAGCGGGTCCCCTTC 62.193 60.000 1.00 0.00 0.00 3.46
328 348 2.746277 CAAAGCGGGTCCCCTTCG 60.746 66.667 1.00 0.00 0.00 3.79
332 352 3.547513 GCGGGTCCCCTTCGCTAT 61.548 66.667 1.00 0.00 45.16 2.97
333 353 2.735237 CGGGTCCCCTTCGCTATC 59.265 66.667 1.00 0.00 0.00 2.08
334 354 1.833049 CGGGTCCCCTTCGCTATCT 60.833 63.158 1.00 0.00 0.00 1.98
335 355 1.807495 CGGGTCCCCTTCGCTATCTC 61.807 65.000 1.00 0.00 0.00 2.75
336 356 1.473497 GGGTCCCCTTCGCTATCTCC 61.473 65.000 0.00 0.00 0.00 3.71
359 379 1.401552 CATACAACCACATGCGGGAAG 59.598 52.381 10.76 5.27 0.00 3.46
395 415 2.799916 GACGACGCACCGTGTCTC 60.800 66.667 5.06 0.00 43.49 3.36
493 514 0.104934 AAGTCTCCGGGCCTATCCAT 60.105 55.000 0.84 0.00 36.21 3.41
499 520 1.674057 CGGGCCTATCCATCAGACC 59.326 63.158 0.84 0.00 36.21 3.85
513 534 0.034059 CAGACCGCACTGAACTTCCT 59.966 55.000 0.00 0.00 39.94 3.36
514 535 0.759346 AGACCGCACTGAACTTCCTT 59.241 50.000 0.00 0.00 0.00 3.36
515 536 1.149148 GACCGCACTGAACTTCCTTC 58.851 55.000 0.00 0.00 0.00 3.46
516 537 0.468226 ACCGCACTGAACTTCCTTCA 59.532 50.000 0.00 0.00 36.46 3.02
517 538 1.134220 ACCGCACTGAACTTCCTTCAA 60.134 47.619 0.00 0.00 38.47 2.69
518 539 1.946768 CCGCACTGAACTTCCTTCAAA 59.053 47.619 0.00 0.00 38.47 2.69
519 540 2.357637 CCGCACTGAACTTCCTTCAAAA 59.642 45.455 0.00 0.00 38.47 2.44
520 541 3.548818 CCGCACTGAACTTCCTTCAAAAG 60.549 47.826 0.00 0.00 38.47 2.27
627 659 2.034532 TGCAGGCACATGGGTCAG 59.965 61.111 0.57 0.00 0.00 3.51
637 669 1.003355 ATGGGTCAGTTGCTCGTGG 60.003 57.895 0.00 0.00 0.00 4.94
674 710 1.095600 TGGACGACTTCTCATCTCCG 58.904 55.000 0.00 0.00 0.00 4.63
725 763 4.025480 CGTTTAGTTAAACACGCACCTTCT 60.025 41.667 13.44 0.00 44.29 2.85
870 918 2.623915 GCATGATCCTGCGCCATCC 61.624 63.158 4.18 0.00 31.49 3.51
901 955 1.659098 GTTCCTGTAACGATTCTGCGG 59.341 52.381 0.00 0.00 35.12 5.69
918 972 3.484407 TGCGGTCTCTCCTATAACTACC 58.516 50.000 0.00 0.00 0.00 3.18
921 975 4.716794 CGGTCTCTCCTATAACTACCTGT 58.283 47.826 0.00 0.00 0.00 4.00
926 980 5.371769 TCTCTCCTATAACTACCTGTAGGCA 59.628 44.000 9.03 0.00 39.32 4.75
929 983 4.140994 TCCTATAACTACCTGTAGGCAGCT 60.141 45.833 9.03 0.00 41.26 4.24
949 1005 2.359602 CTCAGCCAGTGCCCAGTG 60.360 66.667 0.00 0.00 38.69 3.66
968 1024 1.332686 TGGACAGCGTACATAGCTACG 59.667 52.381 0.00 0.00 44.06 3.51
978 1034 3.611766 ACATAGCTACGGTTTGCTTCT 57.388 42.857 12.26 0.99 40.35 2.85
992 1048 3.177997 TGCTTCTTTCTTTGGTTTGCC 57.822 42.857 0.00 0.00 0.00 4.52
1555 1650 1.918293 ATCCCCGTGCAGTCCAAGA 60.918 57.895 0.00 0.00 0.00 3.02
1563 1658 3.076092 CAGTCCAAGAGGCAGCCT 58.924 61.111 16.12 16.12 36.03 4.58
1599 1694 2.124819 AAGCTGATGGGCGAGCTG 60.125 61.111 0.00 0.00 44.97 4.24
1603 1698 4.166888 TGATGGGCGAGCTGAGGC 62.167 66.667 0.00 0.00 39.06 4.70
1695 1790 1.973281 CATGGCCAAGTCGGTGCTT 60.973 57.895 10.96 0.00 36.97 3.91
1758 1853 1.605453 GGGATTGCCACCTCCGTTA 59.395 57.895 0.00 0.00 35.15 3.18
1759 1854 0.463833 GGGATTGCCACCTCCGTTAG 60.464 60.000 0.00 0.00 35.15 2.34
1872 1967 1.285950 GCAAAAAGACACGGCCTCC 59.714 57.895 0.00 0.00 0.00 4.30
2029 2124 2.680352 ACGGGATGACGGAGCTGT 60.680 61.111 0.00 0.00 38.39 4.40
2412 2507 2.425592 CTGGCCTGGTCAACGACA 59.574 61.111 3.32 0.00 33.68 4.35
2416 2511 1.586154 GGCCTGGTCAACGACAATGG 61.586 60.000 0.00 0.00 33.68 3.16
2621 2741 8.068977 ACGACTATAAAAGATTCTAGTAGTGCG 58.931 37.037 0.00 0.00 34.82 5.34
2622 2742 8.281194 CGACTATAAAAGATTCTAGTAGTGCGA 58.719 37.037 0.00 0.00 30.94 5.10
2725 2878 3.762407 TGAATCGGGAGTTTGAGACAA 57.238 42.857 0.00 0.00 0.00 3.18
2749 2957 6.352016 TGCTAGATATTCCTTAGAAGCTGG 57.648 41.667 0.00 0.00 34.86 4.85
2753 2961 6.279513 AGATATTCCTTAGAAGCTGGATCG 57.720 41.667 0.00 0.00 34.86 3.69
2761 2969 5.355350 CCTTAGAAGCTGGATCGTTGAAAAT 59.645 40.000 0.00 0.00 0.00 1.82
2847 3060 7.445707 TGGAGGCGCAATCTATATAGACTATAG 59.554 40.741 14.71 7.05 34.72 1.31
2891 3104 9.444600 AGTGTTCGTTATGATTTGGTAGTTATT 57.555 29.630 0.00 0.00 0.00 1.40
2917 3131 5.395682 AACACAAAGTAGGCGTACATAGA 57.604 39.130 18.13 0.00 0.00 1.98
3002 3216 4.816385 TGAGGCTAATAGGCAATCGAAAAG 59.184 41.667 16.29 0.00 44.19 2.27
3064 3294 4.023193 ACCAATTTAGCTTTTCACGACCAG 60.023 41.667 0.00 0.00 0.00 4.00
3066 3296 5.180492 CCAATTTAGCTTTTCACGACCAGTA 59.820 40.000 0.00 0.00 0.00 2.74
3081 3311 4.000988 GACCAGTATGATGTTTCACGGTT 58.999 43.478 0.00 0.00 39.69 4.44
3126 3356 1.140252 GGAGAGCCAATACGCCCTTAA 59.860 52.381 0.00 0.00 0.00 1.85
3141 3371 3.954258 GCCCTTAATCAGGCTACAATTGT 59.046 43.478 16.68 16.68 46.14 2.71
3142 3372 4.202050 GCCCTTAATCAGGCTACAATTGTG 60.202 45.833 21.42 11.79 46.14 3.33
3143 3373 5.192927 CCCTTAATCAGGCTACAATTGTGA 58.807 41.667 21.42 9.62 42.29 3.58
3144 3374 5.829924 CCCTTAATCAGGCTACAATTGTGAT 59.170 40.000 21.42 11.51 42.29 3.06
3145 3375 6.998074 CCCTTAATCAGGCTACAATTGTGATA 59.002 38.462 21.42 0.00 42.29 2.15
3146 3376 7.173907 CCCTTAATCAGGCTACAATTGTGATAG 59.826 40.741 21.42 11.60 42.29 2.08
3147 3377 7.173907 CCTTAATCAGGCTACAATTGTGATAGG 59.826 40.741 21.42 13.78 35.13 2.57
3148 3378 5.636903 ATCAGGCTACAATTGTGATAGGT 57.363 39.130 21.42 0.88 0.00 3.08
3149 3379 5.435686 TCAGGCTACAATTGTGATAGGTT 57.564 39.130 21.42 0.00 0.00 3.50
3150 3380 5.185454 TCAGGCTACAATTGTGATAGGTTG 58.815 41.667 21.42 9.85 0.00 3.77
3151 3381 5.045942 TCAGGCTACAATTGTGATAGGTTGA 60.046 40.000 21.42 11.76 0.00 3.18
3152 3382 5.295292 CAGGCTACAATTGTGATAGGTTGAG 59.705 44.000 21.42 7.99 0.00 3.02
3153 3383 5.189736 AGGCTACAATTGTGATAGGTTGAGA 59.810 40.000 21.42 0.00 0.00 3.27
3154 3384 6.058183 GGCTACAATTGTGATAGGTTGAGAT 58.942 40.000 21.42 0.00 0.00 2.75
3155 3385 7.071196 AGGCTACAATTGTGATAGGTTGAGATA 59.929 37.037 21.42 0.00 0.00 1.98
3156 3386 7.880195 GGCTACAATTGTGATAGGTTGAGATAT 59.120 37.037 21.42 0.00 0.00 1.63
3157 3387 9.277783 GCTACAATTGTGATAGGTTGAGATATT 57.722 33.333 21.42 0.00 0.00 1.28
3159 3389 8.455903 ACAATTGTGATAGGTTGAGATATTGG 57.544 34.615 11.07 0.00 0.00 3.16
3160 3390 8.274322 ACAATTGTGATAGGTTGAGATATTGGA 58.726 33.333 11.07 0.00 0.00 3.53
3161 3391 8.781196 CAATTGTGATAGGTTGAGATATTGGAG 58.219 37.037 0.00 0.00 0.00 3.86
3162 3392 7.675161 TTGTGATAGGTTGAGATATTGGAGA 57.325 36.000 0.00 0.00 0.00 3.71
3163 3393 7.675161 TGTGATAGGTTGAGATATTGGAGAA 57.325 36.000 0.00 0.00 0.00 2.87
3164 3394 7.730084 TGTGATAGGTTGAGATATTGGAGAAG 58.270 38.462 0.00 0.00 0.00 2.85
3165 3395 7.345653 TGTGATAGGTTGAGATATTGGAGAAGT 59.654 37.037 0.00 0.00 0.00 3.01
3166 3396 8.861086 GTGATAGGTTGAGATATTGGAGAAGTA 58.139 37.037 0.00 0.00 0.00 2.24
3167 3397 9.434275 TGATAGGTTGAGATATTGGAGAAGTAA 57.566 33.333 0.00 0.00 0.00 2.24
3170 3400 8.970859 AGGTTGAGATATTGGAGAAGTAATTG 57.029 34.615 0.00 0.00 0.00 2.32
3171 3401 8.552296 AGGTTGAGATATTGGAGAAGTAATTGT 58.448 33.333 0.00 0.00 0.00 2.71
3172 3402 9.178758 GGTTGAGATATTGGAGAAGTAATTGTT 57.821 33.333 0.00 0.00 0.00 2.83
3173 3403 9.994432 GTTGAGATATTGGAGAAGTAATTGTTG 57.006 33.333 0.00 0.00 0.00 3.33
3174 3404 9.739276 TTGAGATATTGGAGAAGTAATTGTTGT 57.261 29.630 0.00 0.00 0.00 3.32
3182 3412 8.196802 TGGAGAAGTAATTGTTGTATTGATCG 57.803 34.615 0.00 0.00 0.00 3.69
3183 3413 7.279981 TGGAGAAGTAATTGTTGTATTGATCGG 59.720 37.037 0.00 0.00 0.00 4.18
3184 3414 7.254795 GGAGAAGTAATTGTTGTATTGATCGGG 60.255 40.741 0.00 0.00 0.00 5.14
3185 3415 6.542370 AGAAGTAATTGTTGTATTGATCGGGG 59.458 38.462 0.00 0.00 0.00 5.73
3186 3416 4.578928 AGTAATTGTTGTATTGATCGGGGC 59.421 41.667 0.00 0.00 0.00 5.80
3187 3417 1.757682 TTGTTGTATTGATCGGGGCC 58.242 50.000 0.00 0.00 0.00 5.80
3188 3418 0.916086 TGTTGTATTGATCGGGGCCT 59.084 50.000 0.84 0.00 0.00 5.19
3189 3419 1.134220 TGTTGTATTGATCGGGGCCTC 60.134 52.381 0.84 0.00 0.00 4.70
3190 3420 1.134220 GTTGTATTGATCGGGGCCTCA 60.134 52.381 1.96 0.00 0.00 3.86
3191 3421 1.208706 TGTATTGATCGGGGCCTCAA 58.791 50.000 1.96 5.38 35.95 3.02
3192 3422 1.140852 TGTATTGATCGGGGCCTCAAG 59.859 52.381 1.96 0.00 35.04 3.02
3193 3423 0.764890 TATTGATCGGGGCCTCAAGG 59.235 55.000 1.96 0.00 35.04 3.61
3194 3424 1.999634 ATTGATCGGGGCCTCAAGGG 62.000 60.000 1.96 0.00 35.04 3.95
3211 3441 8.779354 CCTCAAGGGCTGTTTATATAGATTAC 57.221 38.462 0.00 0.00 0.00 1.89
3212 3442 8.375506 CCTCAAGGGCTGTTTATATAGATTACA 58.624 37.037 0.00 0.00 0.00 2.41
3213 3443 9.778741 CTCAAGGGCTGTTTATATAGATTACAA 57.221 33.333 0.00 0.00 0.00 2.41
3216 3446 8.622948 AGGGCTGTTTATATAGATTACAAAGC 57.377 34.615 0.00 0.00 0.00 3.51
3217 3447 8.440771 AGGGCTGTTTATATAGATTACAAAGCT 58.559 33.333 0.00 0.00 0.00 3.74
3218 3448 9.067986 GGGCTGTTTATATAGATTACAAAGCTT 57.932 33.333 0.00 0.00 0.00 3.74
3219 3449 9.884465 GGCTGTTTATATAGATTACAAAGCTTG 57.116 33.333 0.00 0.00 0.00 4.01
3220 3450 9.884465 GCTGTTTATATAGATTACAAAGCTTGG 57.116 33.333 0.00 0.00 34.12 3.61
3222 3452 8.846211 TGTTTATATAGATTACAAAGCTTGGGC 58.154 33.333 5.66 0.00 39.06 5.36
3236 3466 2.327325 TTGGGCTCCAAGACTAGACT 57.673 50.000 0.00 0.00 38.75 3.24
3237 3467 3.468071 TTGGGCTCCAAGACTAGACTA 57.532 47.619 0.00 0.00 38.75 2.59
3238 3468 3.468071 TGGGCTCCAAGACTAGACTAA 57.532 47.619 0.00 0.00 0.00 2.24
3239 3469 3.995636 TGGGCTCCAAGACTAGACTAAT 58.004 45.455 0.00 0.00 0.00 1.73
3240 3470 5.138758 TGGGCTCCAAGACTAGACTAATA 57.861 43.478 0.00 0.00 0.00 0.98
3241 3471 5.141182 TGGGCTCCAAGACTAGACTAATAG 58.859 45.833 0.00 0.00 0.00 1.73
3242 3472 5.103643 TGGGCTCCAAGACTAGACTAATAGA 60.104 44.000 0.00 0.00 0.00 1.98
3243 3473 5.475564 GGGCTCCAAGACTAGACTAATAGAG 59.524 48.000 0.00 1.97 0.00 2.43
3244 3474 6.300703 GGCTCCAAGACTAGACTAATAGAGA 58.699 44.000 0.00 0.00 0.00 3.10
3245 3475 6.946009 GGCTCCAAGACTAGACTAATAGAGAT 59.054 42.308 0.00 0.00 0.00 2.75
3246 3476 8.104566 GGCTCCAAGACTAGACTAATAGAGATA 58.895 40.741 0.00 0.00 0.00 1.98
3247 3477 9.162764 GCTCCAAGACTAGACTAATAGAGATAG 57.837 40.741 0.00 0.00 0.00 2.08
3282 3512 9.452287 ACGAATAGACTTATACTCTAAGATCCC 57.548 37.037 0.00 0.00 0.00 3.85
3283 3513 8.895737 CGAATAGACTTATACTCTAAGATCCCC 58.104 40.741 0.00 0.00 0.00 4.81
3284 3514 9.192642 GAATAGACTTATACTCTAAGATCCCCC 57.807 40.741 0.00 0.00 0.00 5.40
3298 3528 4.003788 CCCCCGCAGTCTCAACGT 62.004 66.667 0.00 0.00 0.00 3.99
3299 3529 2.432628 CCCCGCAGTCTCAACGTC 60.433 66.667 0.00 0.00 0.00 4.34
3300 3530 2.338620 CCCGCAGTCTCAACGTCA 59.661 61.111 0.00 0.00 0.00 4.35
3301 3531 1.734477 CCCGCAGTCTCAACGTCAG 60.734 63.158 0.00 0.00 0.00 3.51
3302 3532 1.734477 CCGCAGTCTCAACGTCAGG 60.734 63.158 0.00 0.00 0.00 3.86
3303 3533 1.007271 CGCAGTCTCAACGTCAGGT 60.007 57.895 0.00 0.00 0.00 4.00
3304 3534 1.278172 CGCAGTCTCAACGTCAGGTG 61.278 60.000 0.00 0.00 36.10 4.00
3305 3535 0.032130 GCAGTCTCAACGTCAGGTGA 59.968 55.000 0.00 0.00 42.75 4.02
3306 3536 1.538204 GCAGTCTCAACGTCAGGTGAA 60.538 52.381 0.00 0.00 44.55 3.18
3307 3537 2.821546 CAGTCTCAACGTCAGGTGAAA 58.178 47.619 0.00 0.00 44.55 2.69
3308 3538 2.540101 CAGTCTCAACGTCAGGTGAAAC 59.460 50.000 0.00 0.00 44.55 2.78
3309 3539 2.167693 AGTCTCAACGTCAGGTGAAACA 59.832 45.455 0.00 0.00 44.55 2.83
3310 3540 2.933906 GTCTCAACGTCAGGTGAAACAA 59.066 45.455 0.00 0.00 44.55 2.83
3311 3541 3.560068 GTCTCAACGTCAGGTGAAACAAT 59.440 43.478 0.00 0.00 44.55 2.71
3312 3542 3.559655 TCTCAACGTCAGGTGAAACAATG 59.440 43.478 0.00 0.00 44.55 2.82
3313 3543 3.275143 TCAACGTCAGGTGAAACAATGT 58.725 40.909 0.00 0.00 41.88 2.71
3314 3544 3.692101 TCAACGTCAGGTGAAACAATGTT 59.308 39.130 0.00 0.00 41.88 2.71
3315 3545 3.691049 ACGTCAGGTGAAACAATGTTG 57.309 42.857 0.00 0.00 39.98 3.33
3316 3546 3.275143 ACGTCAGGTGAAACAATGTTGA 58.725 40.909 0.00 0.00 39.98 3.18
3317 3547 3.312421 ACGTCAGGTGAAACAATGTTGAG 59.688 43.478 0.00 0.00 39.98 3.02
3318 3548 3.559655 CGTCAGGTGAAACAATGTTGAGA 59.440 43.478 0.00 0.00 39.98 3.27
3319 3549 4.552767 CGTCAGGTGAAACAATGTTGAGAC 60.553 45.833 0.00 1.80 39.98 3.36
3320 3550 4.576463 GTCAGGTGAAACAATGTTGAGACT 59.424 41.667 0.00 0.00 39.98 3.24
3321 3551 4.576053 TCAGGTGAAACAATGTTGAGACTG 59.424 41.667 0.00 7.04 39.98 3.51
3322 3552 3.885297 AGGTGAAACAATGTTGAGACTGG 59.115 43.478 0.00 0.00 39.98 4.00
3323 3553 3.882888 GGTGAAACAATGTTGAGACTGGA 59.117 43.478 0.00 0.00 39.98 3.86
3324 3554 4.023707 GGTGAAACAATGTTGAGACTGGAG 60.024 45.833 0.00 0.00 39.98 3.86
3325 3555 3.565482 TGAAACAATGTTGAGACTGGAGC 59.435 43.478 0.00 0.00 0.00 4.70
3326 3556 1.800805 ACAATGTTGAGACTGGAGCG 58.199 50.000 0.00 0.00 0.00 5.03
3327 3557 1.070758 ACAATGTTGAGACTGGAGCGT 59.929 47.619 0.00 0.00 0.00 5.07
3328 3558 2.299013 ACAATGTTGAGACTGGAGCGTA 59.701 45.455 0.00 0.00 0.00 4.42
3329 3559 3.055819 ACAATGTTGAGACTGGAGCGTAT 60.056 43.478 0.00 0.00 0.00 3.06
3330 3560 2.654749 TGTTGAGACTGGAGCGTATG 57.345 50.000 0.00 0.00 0.00 2.39
3331 3561 1.893137 TGTTGAGACTGGAGCGTATGT 59.107 47.619 0.00 0.00 0.00 2.29
3332 3562 2.094700 TGTTGAGACTGGAGCGTATGTC 60.095 50.000 0.00 0.00 0.00 3.06
3333 3563 0.733150 TGAGACTGGAGCGTATGTCG 59.267 55.000 0.00 0.00 43.12 4.35
3334 3564 0.029567 GAGACTGGAGCGTATGTCGG 59.970 60.000 0.00 0.00 40.26 4.79
3356 3586 4.094684 CGATGCAGTCGGAAGTCC 57.905 61.111 9.73 0.00 46.47 3.85
3357 3587 1.513158 CGATGCAGTCGGAAGTCCT 59.487 57.895 9.73 0.00 46.47 3.85
3358 3588 0.108615 CGATGCAGTCGGAAGTCCTT 60.109 55.000 9.73 0.00 46.47 3.36
3359 3589 1.673033 CGATGCAGTCGGAAGTCCTTT 60.673 52.381 9.73 0.00 46.47 3.11
3360 3590 1.734465 GATGCAGTCGGAAGTCCTTTG 59.266 52.381 0.00 0.00 0.00 2.77
3361 3591 0.250295 TGCAGTCGGAAGTCCTTTGG 60.250 55.000 0.00 0.00 0.00 3.28
3362 3592 0.250338 GCAGTCGGAAGTCCTTTGGT 60.250 55.000 0.00 0.00 0.00 3.67
3363 3593 1.001633 GCAGTCGGAAGTCCTTTGGTA 59.998 52.381 0.00 0.00 0.00 3.25
3364 3594 2.549349 GCAGTCGGAAGTCCTTTGGTAA 60.549 50.000 0.00 0.00 0.00 2.85
3365 3595 3.735591 CAGTCGGAAGTCCTTTGGTAAA 58.264 45.455 0.00 0.00 0.00 2.01
3366 3596 4.131596 CAGTCGGAAGTCCTTTGGTAAAA 58.868 43.478 0.00 0.00 0.00 1.52
3367 3597 4.577283 CAGTCGGAAGTCCTTTGGTAAAAA 59.423 41.667 0.00 0.00 0.00 1.94
3368 3598 5.240844 CAGTCGGAAGTCCTTTGGTAAAAAT 59.759 40.000 0.00 0.00 0.00 1.82
3369 3599 5.240844 AGTCGGAAGTCCTTTGGTAAAAATG 59.759 40.000 0.00 0.00 0.00 2.32
3370 3600 5.009310 GTCGGAAGTCCTTTGGTAAAAATGT 59.991 40.000 0.00 0.00 0.00 2.71
3371 3601 5.239963 TCGGAAGTCCTTTGGTAAAAATGTC 59.760 40.000 0.00 0.00 0.00 3.06
3372 3602 5.009210 CGGAAGTCCTTTGGTAAAAATGTCA 59.991 40.000 0.00 0.00 0.00 3.58
3373 3603 6.447162 GGAAGTCCTTTGGTAAAAATGTCAG 58.553 40.000 0.00 0.00 0.00 3.51
3374 3604 5.453567 AGTCCTTTGGTAAAAATGTCAGC 57.546 39.130 0.00 0.00 0.00 4.26
3375 3605 4.892934 AGTCCTTTGGTAAAAATGTCAGCA 59.107 37.500 0.00 0.00 0.00 4.41
3376 3606 5.362430 AGTCCTTTGGTAAAAATGTCAGCAA 59.638 36.000 0.00 0.00 0.00 3.91
3377 3607 6.045955 GTCCTTTGGTAAAAATGTCAGCAAA 58.954 36.000 0.00 0.00 37.33 3.68
3378 3608 6.705825 GTCCTTTGGTAAAAATGTCAGCAAAT 59.294 34.615 0.00 0.00 38.53 2.32
3379 3609 7.226523 GTCCTTTGGTAAAAATGTCAGCAAATT 59.773 33.333 0.00 0.00 38.53 1.82
3380 3610 7.226325 TCCTTTGGTAAAAATGTCAGCAAATTG 59.774 33.333 0.00 0.00 38.53 2.32
3381 3611 6.857777 TTGGTAAAAATGTCAGCAAATTGG 57.142 33.333 0.00 0.00 0.00 3.16
3382 3612 5.303971 TGGTAAAAATGTCAGCAAATTGGG 58.696 37.500 0.00 0.00 0.00 4.12
3383 3613 4.154015 GGTAAAAATGTCAGCAAATTGGGC 59.846 41.667 0.00 0.00 0.00 5.36
3384 3614 3.488778 AAAATGTCAGCAAATTGGGCA 57.511 38.095 5.30 0.00 0.00 5.36
3385 3615 2.460757 AATGTCAGCAAATTGGGCAC 57.539 45.000 5.30 0.00 0.00 5.01
3386 3616 1.636148 ATGTCAGCAAATTGGGCACT 58.364 45.000 5.30 0.00 0.00 4.40
3387 3617 1.412079 TGTCAGCAAATTGGGCACTT 58.588 45.000 5.30 0.00 0.00 3.16
3388 3618 1.068895 TGTCAGCAAATTGGGCACTTG 59.931 47.619 5.30 0.00 0.00 3.16
3389 3619 1.069049 GTCAGCAAATTGGGCACTTGT 59.931 47.619 5.30 0.00 0.00 3.16
3390 3620 2.295909 GTCAGCAAATTGGGCACTTGTA 59.704 45.455 5.30 0.00 0.00 2.41
3391 3621 2.557924 TCAGCAAATTGGGCACTTGTAG 59.442 45.455 5.30 0.00 0.00 2.74
3392 3622 1.895131 AGCAAATTGGGCACTTGTAGG 59.105 47.619 5.30 0.00 0.00 3.18
3393 3623 1.892474 GCAAATTGGGCACTTGTAGGA 59.108 47.619 0.00 0.00 0.00 2.94
3394 3624 2.298729 GCAAATTGGGCACTTGTAGGAA 59.701 45.455 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.504384 CGAATGCGATGGACGTCATC 59.496 55.000 18.91 16.09 46.63 2.92
10 11 1.490693 GCGAATGCGATGGACGTCAT 61.491 55.000 18.91 8.99 44.60 3.06
11 12 2.164663 GCGAATGCGATGGACGTCA 61.165 57.895 18.91 3.91 44.60 4.35
12 13 2.621000 GCGAATGCGATGGACGTC 59.379 61.111 7.13 7.13 44.60 4.34
28 29 3.733960 GGACCAAACCGCCGAAGC 61.734 66.667 0.00 0.00 0.00 3.86
29 30 3.053896 GGGACCAAACCGCCGAAG 61.054 66.667 0.00 0.00 0.00 3.79
38 39 4.310642 CGTTCACGGATAGGGGACCAAA 62.311 54.545 0.00 0.00 44.20 3.28
39 40 2.840771 CGTTCACGGATAGGGGACCAA 61.841 57.143 0.00 0.00 44.20 3.67
40 41 1.324740 CGTTCACGGATAGGGGACCA 61.325 60.000 0.00 0.00 44.20 4.02
41 42 1.440476 CGTTCACGGATAGGGGACC 59.560 63.158 0.00 0.00 42.66 4.46
52 53 2.829043 TTCTCCCGCATCCGTTCACG 62.829 60.000 0.00 0.00 39.44 4.35
53 54 0.672401 TTTCTCCCGCATCCGTTCAC 60.672 55.000 0.00 0.00 0.00 3.18
54 55 0.035598 TTTTCTCCCGCATCCGTTCA 59.964 50.000 0.00 0.00 0.00 3.18
55 56 1.379527 ATTTTCTCCCGCATCCGTTC 58.620 50.000 0.00 0.00 0.00 3.95
56 57 1.834188 AATTTTCTCCCGCATCCGTT 58.166 45.000 0.00 0.00 0.00 4.44
57 58 1.834188 AAATTTTCTCCCGCATCCGT 58.166 45.000 0.00 0.00 0.00 4.69
58 59 2.286184 CGTAAATTTTCTCCCGCATCCG 60.286 50.000 0.00 0.00 0.00 4.18
59 60 2.032924 CCGTAAATTTTCTCCCGCATCC 59.967 50.000 0.00 0.00 0.00 3.51
60 61 2.032924 CCCGTAAATTTTCTCCCGCATC 59.967 50.000 0.00 0.00 0.00 3.91
61 62 2.021457 CCCGTAAATTTTCTCCCGCAT 58.979 47.619 0.00 0.00 0.00 4.73
62 63 1.271488 ACCCGTAAATTTTCTCCCGCA 60.271 47.619 0.00 0.00 0.00 5.69
63 64 1.456296 ACCCGTAAATTTTCTCCCGC 58.544 50.000 0.00 0.00 0.00 6.13
64 65 2.414957 GCAACCCGTAAATTTTCTCCCG 60.415 50.000 0.00 0.00 0.00 5.14
65 66 2.094390 GGCAACCCGTAAATTTTCTCCC 60.094 50.000 0.00 0.00 0.00 4.30
66 67 3.226346 GGCAACCCGTAAATTTTCTCC 57.774 47.619 0.00 0.00 0.00 3.71
79 80 2.359975 CCTCTCCAACGGCAACCC 60.360 66.667 0.00 0.00 0.00 4.11
80 81 3.056328 GCCTCTCCAACGGCAACC 61.056 66.667 0.00 0.00 45.59 3.77
84 85 2.666098 TTAGGGCCTCTCCAACGGC 61.666 63.158 10.74 0.00 45.55 5.68
85 86 1.221021 GTTAGGGCCTCTCCAACGG 59.779 63.158 10.74 0.00 36.21 4.44
86 87 1.221021 GGTTAGGGCCTCTCCAACG 59.779 63.158 10.74 0.00 36.21 4.10
87 88 0.253327 CAGGTTAGGGCCTCTCCAAC 59.747 60.000 23.01 16.40 36.58 3.77
88 89 0.178873 ACAGGTTAGGGCCTCTCCAA 60.179 55.000 23.01 6.09 36.58 3.53
89 90 0.617820 GACAGGTTAGGGCCTCTCCA 60.618 60.000 23.01 0.00 36.58 3.86
90 91 0.617820 TGACAGGTTAGGGCCTCTCC 60.618 60.000 10.74 14.36 36.58 3.71
91 92 1.276622 TTGACAGGTTAGGGCCTCTC 58.723 55.000 10.74 4.02 36.58 3.20
92 93 1.840635 GATTGACAGGTTAGGGCCTCT 59.159 52.381 10.74 0.00 36.58 3.69
93 94 1.840635 AGATTGACAGGTTAGGGCCTC 59.159 52.381 10.74 0.00 36.58 4.70
94 95 1.972588 AGATTGACAGGTTAGGGCCT 58.027 50.000 12.58 12.58 39.99 5.19
95 96 2.369394 CAAGATTGACAGGTTAGGGCC 58.631 52.381 0.00 0.00 0.00 5.80
96 97 1.745653 GCAAGATTGACAGGTTAGGGC 59.254 52.381 0.00 0.00 0.00 5.19
97 98 2.290896 TGGCAAGATTGACAGGTTAGGG 60.291 50.000 0.00 0.00 42.34 3.53
98 99 3.071874 TGGCAAGATTGACAGGTTAGG 57.928 47.619 0.00 0.00 42.34 2.69
105 106 1.883638 GCAGGAGTGGCAAGATTGACA 60.884 52.381 0.00 0.00 45.70 3.58
106 107 0.807496 GCAGGAGTGGCAAGATTGAC 59.193 55.000 0.00 0.00 36.50 3.18
107 108 3.254629 GCAGGAGTGGCAAGATTGA 57.745 52.632 0.00 0.00 0.00 2.57
116 117 1.369091 GCACAATACGGCAGGAGTGG 61.369 60.000 0.74 0.00 0.00 4.00
164 165 0.107312 CACCAGGAGGGCTCATTCAG 60.107 60.000 0.00 0.00 42.05 3.02
168 169 3.415087 GCCACCAGGAGGGCTCAT 61.415 66.667 16.82 0.00 46.74 2.90
185 186 3.435327 TCGTTCTCCACCGATTTGAATTG 59.565 43.478 0.00 0.00 0.00 2.32
196 197 1.672145 GGTAAGTGCTCGTTCTCCACC 60.672 57.143 0.00 0.00 0.00 4.61
243 262 9.813080 CTCAGCTAATAACTGTAGTTTGAAAAC 57.187 33.333 2.20 0.00 39.31 2.43
246 265 9.772973 TTTCTCAGCTAATAACTGTAGTTTGAA 57.227 29.630 2.20 0.00 39.31 2.69
247 266 9.772973 TTTTCTCAGCTAATAACTGTAGTTTGA 57.227 29.630 2.20 0.00 39.31 2.69
255 274 7.352719 ACGTCTTTTTCTCAGCTAATAACTG 57.647 36.000 0.00 0.00 36.44 3.16
266 285 4.056050 GCCTTCTGTACGTCTTTTTCTCA 58.944 43.478 0.00 0.00 0.00 3.27
319 339 0.389757 GTGGAGATAGCGAAGGGGAC 59.610 60.000 0.00 0.00 0.00 4.46
320 340 0.759436 GGTGGAGATAGCGAAGGGGA 60.759 60.000 0.00 0.00 0.00 4.81
321 341 1.048724 TGGTGGAGATAGCGAAGGGG 61.049 60.000 0.00 0.00 0.00 4.79
322 342 1.051812 ATGGTGGAGATAGCGAAGGG 58.948 55.000 0.00 0.00 0.00 3.95
323 343 2.628178 TGTATGGTGGAGATAGCGAAGG 59.372 50.000 0.00 0.00 0.00 3.46
324 344 4.051922 GTTGTATGGTGGAGATAGCGAAG 58.948 47.826 0.00 0.00 0.00 3.79
325 345 3.181469 GGTTGTATGGTGGAGATAGCGAA 60.181 47.826 0.00 0.00 0.00 4.70
326 346 2.364324 GGTTGTATGGTGGAGATAGCGA 59.636 50.000 0.00 0.00 0.00 4.93
327 347 2.102420 TGGTTGTATGGTGGAGATAGCG 59.898 50.000 0.00 0.00 0.00 4.26
328 348 3.118408 TGTGGTTGTATGGTGGAGATAGC 60.118 47.826 0.00 0.00 0.00 2.97
329 349 4.753516 TGTGGTTGTATGGTGGAGATAG 57.246 45.455 0.00 0.00 0.00 2.08
330 350 4.685848 GCATGTGGTTGTATGGTGGAGATA 60.686 45.833 0.00 0.00 0.00 1.98
331 351 3.889815 CATGTGGTTGTATGGTGGAGAT 58.110 45.455 0.00 0.00 0.00 2.75
332 352 2.617788 GCATGTGGTTGTATGGTGGAGA 60.618 50.000 0.00 0.00 0.00 3.71
333 353 1.745087 GCATGTGGTTGTATGGTGGAG 59.255 52.381 0.00 0.00 0.00 3.86
334 354 1.832883 GCATGTGGTTGTATGGTGGA 58.167 50.000 0.00 0.00 0.00 4.02
335 355 0.451383 CGCATGTGGTTGTATGGTGG 59.549 55.000 0.00 0.00 0.00 4.61
336 356 0.451383 CCGCATGTGGTTGTATGGTG 59.549 55.000 17.59 0.00 0.00 4.17
359 379 2.813908 CCTCGGTGGCTTACGTGC 60.814 66.667 0.00 0.00 0.00 5.34
484 505 0.601311 GTGCGGTCTGATGGATAGGC 60.601 60.000 0.00 0.00 0.00 3.93
485 506 1.043816 AGTGCGGTCTGATGGATAGG 58.956 55.000 0.00 0.00 0.00 2.57
493 514 0.033504 GGAAGTTCAGTGCGGTCTGA 59.966 55.000 5.01 2.67 41.85 3.27
499 520 3.065371 ACTTTTGAAGGAAGTTCAGTGCG 59.935 43.478 5.01 0.00 46.09 5.34
513 534 3.094484 ACTGGTGGTGGAACTTTTGAA 57.906 42.857 0.00 0.00 36.74 2.69
514 535 2.818751 ACTGGTGGTGGAACTTTTGA 57.181 45.000 0.00 0.00 36.74 2.69
515 536 3.551846 ACTACTGGTGGTGGAACTTTTG 58.448 45.455 0.00 0.00 36.74 2.44
516 537 3.458487 AGACTACTGGTGGTGGAACTTTT 59.542 43.478 0.00 0.00 36.74 2.27
517 538 3.046374 AGACTACTGGTGGTGGAACTTT 58.954 45.455 0.00 0.00 36.74 2.66
518 539 2.690840 AGACTACTGGTGGTGGAACTT 58.309 47.619 0.00 0.00 36.74 2.66
519 540 2.400467 AGACTACTGGTGGTGGAACT 57.600 50.000 0.00 0.00 36.74 3.01
520 541 4.677250 CGATTAGACTACTGGTGGTGGAAC 60.677 50.000 0.00 0.00 0.00 3.62
624 656 1.305201 GGAAAACCACGAGCAACTGA 58.695 50.000 0.00 0.00 0.00 3.41
627 659 1.281656 CCGGAAAACCACGAGCAAC 59.718 57.895 0.00 0.00 0.00 4.17
725 763 3.309296 GTCTGTGGATGGAGGATTAGGA 58.691 50.000 0.00 0.00 0.00 2.94
867 915 1.447314 GGAACGTTCGAAGCGGGAT 60.447 57.895 21.34 8.98 0.00 3.85
870 918 0.387622 TACAGGAACGTTCGAAGCGG 60.388 55.000 21.34 10.88 0.00 5.52
899 947 4.716794 ACAGGTAGTTATAGGAGAGACCG 58.283 47.826 0.00 0.00 44.74 4.79
900 954 6.240145 CCTACAGGTAGTTATAGGAGAGACC 58.760 48.000 5.79 0.00 37.02 3.85
901 955 5.706833 GCCTACAGGTAGTTATAGGAGAGAC 59.293 48.000 5.79 0.00 37.02 3.36
932 986 2.359602 CACTGGGCACTGGCTGAG 60.360 66.667 2.14 2.06 40.87 3.35
933 987 3.957586 CCACTGGGCACTGGCTGA 61.958 66.667 2.14 0.00 40.87 4.26
935 989 3.958860 GTCCACTGGGCACTGGCT 61.959 66.667 2.14 0.00 40.87 4.75
938 992 2.670934 GCTGTCCACTGGGCACTG 60.671 66.667 0.00 0.00 0.00 3.66
940 994 3.234630 TACGCTGTCCACTGGGCAC 62.235 63.158 0.00 0.00 0.00 5.01
941 995 2.920384 TACGCTGTCCACTGGGCA 60.920 61.111 1.48 1.48 0.00 5.36
942 996 2.434359 GTACGCTGTCCACTGGGC 60.434 66.667 0.00 0.00 0.00 5.36
944 998 1.802880 GCTATGTACGCTGTCCACTGG 60.803 57.143 0.00 0.00 0.00 4.00
949 1005 1.334779 CCGTAGCTATGTACGCTGTCC 60.335 57.143 11.96 0.00 43.64 4.02
950 1006 1.332997 ACCGTAGCTATGTACGCTGTC 59.667 52.381 11.96 0.00 43.64 3.51
968 1024 4.201812 GCAAACCAAAGAAAGAAGCAAACC 60.202 41.667 0.00 0.00 0.00 3.27
992 1048 1.524621 GACCTGGCCATGACCGATG 60.525 63.158 15.66 0.00 0.00 3.84
1386 1478 3.787001 CCCCTGGAGAAGCCGACC 61.787 72.222 0.00 0.00 40.66 4.79
1452 1544 2.125673 ATCGCCGCGTACAGCTTT 60.126 55.556 13.39 0.00 45.59 3.51
1872 1967 0.244721 TGAGTGGCTCTGACGATGTG 59.755 55.000 0.00 0.00 0.00 3.21
2003 2098 1.819632 GTCATCCCGTCATGCACCC 60.820 63.158 0.00 0.00 0.00 4.61
2006 2101 2.186644 CCGTCATCCCGTCATGCA 59.813 61.111 0.00 0.00 0.00 3.96
2029 2124 1.934525 GTACAGCTCGTCTCTCATCGA 59.065 52.381 0.00 0.00 34.88 3.59
2160 2255 3.560251 AACCACCGCAGCACTCCT 61.560 61.111 0.00 0.00 0.00 3.69
2320 2415 0.668706 CTGAGACCAACGAGCACCTG 60.669 60.000 0.00 0.00 0.00 4.00
2412 2507 2.811410 ACACATGATGAACTGCCCATT 58.189 42.857 0.00 0.00 0.00 3.16
2416 2511 5.314923 ACATTTACACATGATGAACTGCC 57.685 39.130 0.00 0.00 0.00 4.85
2621 2741 2.122768 ACTCAATCCTCTCCCACCATC 58.877 52.381 0.00 0.00 0.00 3.51
2622 2742 2.277008 ACTCAATCCTCTCCCACCAT 57.723 50.000 0.00 0.00 0.00 3.55
2674 2826 6.920817 TCACGTGTGAGACATAAAGTAGAAT 58.079 36.000 16.51 0.00 34.14 2.40
2725 2878 6.728164 TCCAGCTTCTAAGGAATATCTAGCAT 59.272 38.462 0.00 0.00 0.00 3.79
2753 2961 3.696898 TGTGTACGTTGGCATTTTCAAC 58.303 40.909 0.00 0.00 40.57 3.18
2761 2969 3.665190 TGTTATCATGTGTACGTTGGCA 58.335 40.909 0.00 0.00 0.00 4.92
2847 3060 7.866393 ACGAACACTATGTTATGCTCTATTACC 59.134 37.037 0.00 0.00 41.28 2.85
2891 3104 6.864360 ATGTACGCCTACTTTGTGTTTTTA 57.136 33.333 0.00 0.00 0.00 1.52
3064 3294 6.250527 GCACAAATAACCGTGAAACATCATAC 59.749 38.462 0.00 0.00 35.74 2.39
3066 3296 5.160641 GCACAAATAACCGTGAAACATCAT 58.839 37.500 0.00 0.00 35.74 2.45
3126 3356 5.636903 ACCTATCACAATTGTAGCCTGAT 57.363 39.130 11.53 11.68 0.00 2.90
3141 3371 7.921041 ACTTCTCCAATATCTCAACCTATCA 57.079 36.000 0.00 0.00 0.00 2.15
3145 3375 8.552296 ACAATTACTTCTCCAATATCTCAACCT 58.448 33.333 0.00 0.00 0.00 3.50
3146 3376 8.738645 ACAATTACTTCTCCAATATCTCAACC 57.261 34.615 0.00 0.00 0.00 3.77
3147 3377 9.994432 CAACAATTACTTCTCCAATATCTCAAC 57.006 33.333 0.00 0.00 0.00 3.18
3148 3378 9.739276 ACAACAATTACTTCTCCAATATCTCAA 57.261 29.630 0.00 0.00 0.00 3.02
3156 3386 8.664798 CGATCAATACAACAATTACTTCTCCAA 58.335 33.333 0.00 0.00 0.00 3.53
3157 3387 7.279981 CCGATCAATACAACAATTACTTCTCCA 59.720 37.037 0.00 0.00 0.00 3.86
3158 3388 7.254795 CCCGATCAATACAACAATTACTTCTCC 60.255 40.741 0.00 0.00 0.00 3.71
3159 3389 7.254795 CCCCGATCAATACAACAATTACTTCTC 60.255 40.741 0.00 0.00 0.00 2.87
3160 3390 6.542370 CCCCGATCAATACAACAATTACTTCT 59.458 38.462 0.00 0.00 0.00 2.85
3161 3391 6.725246 CCCCGATCAATACAACAATTACTTC 58.275 40.000 0.00 0.00 0.00 3.01
3162 3392 5.067283 GCCCCGATCAATACAACAATTACTT 59.933 40.000 0.00 0.00 0.00 2.24
3163 3393 4.578928 GCCCCGATCAATACAACAATTACT 59.421 41.667 0.00 0.00 0.00 2.24
3164 3394 4.261447 GGCCCCGATCAATACAACAATTAC 60.261 45.833 0.00 0.00 0.00 1.89
3165 3395 3.886505 GGCCCCGATCAATACAACAATTA 59.113 43.478 0.00 0.00 0.00 1.40
3166 3396 2.693074 GGCCCCGATCAATACAACAATT 59.307 45.455 0.00 0.00 0.00 2.32
3167 3397 2.091885 AGGCCCCGATCAATACAACAAT 60.092 45.455 0.00 0.00 0.00 2.71
3168 3398 1.283613 AGGCCCCGATCAATACAACAA 59.716 47.619 0.00 0.00 0.00 2.83
3169 3399 0.916086 AGGCCCCGATCAATACAACA 59.084 50.000 0.00 0.00 0.00 3.33
3170 3400 1.134220 TGAGGCCCCGATCAATACAAC 60.134 52.381 0.00 0.00 0.00 3.32
3171 3401 1.208706 TGAGGCCCCGATCAATACAA 58.791 50.000 0.00 0.00 0.00 2.41
3172 3402 1.140852 CTTGAGGCCCCGATCAATACA 59.859 52.381 0.00 0.00 35.04 2.29
3173 3403 1.543429 CCTTGAGGCCCCGATCAATAC 60.543 57.143 0.00 0.00 35.04 1.89
3174 3404 0.764890 CCTTGAGGCCCCGATCAATA 59.235 55.000 0.00 0.00 35.04 1.90
3175 3405 1.533711 CCTTGAGGCCCCGATCAAT 59.466 57.895 0.00 0.00 35.04 2.57
3176 3406 2.679342 CCCTTGAGGCCCCGATCAA 61.679 63.158 0.00 1.36 34.41 2.57
3177 3407 3.089874 CCCTTGAGGCCCCGATCA 61.090 66.667 0.00 0.00 0.00 2.92
3186 3416 8.375506 TGTAATCTATATAAACAGCCCTTGAGG 58.624 37.037 0.00 0.00 39.47 3.86
3187 3417 9.778741 TTGTAATCTATATAAACAGCCCTTGAG 57.221 33.333 0.00 0.00 0.00 3.02
3190 3420 9.067986 GCTTTGTAATCTATATAAACAGCCCTT 57.932 33.333 0.00 0.00 0.00 3.95
3191 3421 8.440771 AGCTTTGTAATCTATATAAACAGCCCT 58.559 33.333 0.00 0.00 0.00 5.19
3192 3422 8.622948 AGCTTTGTAATCTATATAAACAGCCC 57.377 34.615 0.00 0.00 0.00 5.19
3193 3423 9.884465 CAAGCTTTGTAATCTATATAAACAGCC 57.116 33.333 0.00 0.00 0.00 4.85
3194 3424 9.884465 CCAAGCTTTGTAATCTATATAAACAGC 57.116 33.333 0.00 0.00 0.00 4.40
3196 3426 8.846211 GCCCAAGCTTTGTAATCTATATAAACA 58.154 33.333 0.00 0.00 35.50 2.83
3217 3447 2.327325 AGTCTAGTCTTGGAGCCCAA 57.673 50.000 6.50 6.50 41.69 4.12
3218 3448 3.468071 TTAGTCTAGTCTTGGAGCCCA 57.532 47.619 0.00 0.00 0.00 5.36
3219 3449 5.386924 TCTATTAGTCTAGTCTTGGAGCCC 58.613 45.833 0.00 0.00 0.00 5.19
3220 3450 6.300703 TCTCTATTAGTCTAGTCTTGGAGCC 58.699 44.000 0.00 0.00 0.00 4.70
3221 3451 7.996098 ATCTCTATTAGTCTAGTCTTGGAGC 57.004 40.000 0.00 0.00 0.00 4.70
3256 3486 9.452287 GGGATCTTAGAGTATAAGTCTATTCGT 57.548 37.037 4.52 0.00 30.81 3.85
3257 3487 8.895737 GGGGATCTTAGAGTATAAGTCTATTCG 58.104 40.741 4.52 0.00 30.81 3.34
3258 3488 9.192642 GGGGGATCTTAGAGTATAAGTCTATTC 57.807 40.741 4.52 0.00 30.81 1.75
3281 3511 3.934391 GACGTTGAGACTGCGGGGG 62.934 68.421 0.00 0.00 0.00 5.40
3282 3512 2.432628 GACGTTGAGACTGCGGGG 60.433 66.667 0.00 0.00 0.00 5.73
3283 3513 1.734477 CTGACGTTGAGACTGCGGG 60.734 63.158 0.00 0.00 0.00 6.13
3284 3514 1.734477 CCTGACGTTGAGACTGCGG 60.734 63.158 0.00 0.00 0.00 5.69
3285 3515 1.007271 ACCTGACGTTGAGACTGCG 60.007 57.895 0.00 0.00 0.00 5.18
3286 3516 0.032130 TCACCTGACGTTGAGACTGC 59.968 55.000 0.00 0.00 0.00 4.40
3287 3517 2.509052 TTCACCTGACGTTGAGACTG 57.491 50.000 0.00 0.00 0.00 3.51
3288 3518 2.167693 TGTTTCACCTGACGTTGAGACT 59.832 45.455 9.28 0.00 0.00 3.24
3289 3519 2.546778 TGTTTCACCTGACGTTGAGAC 58.453 47.619 0.00 0.00 0.00 3.36
3290 3520 2.971660 TGTTTCACCTGACGTTGAGA 57.028 45.000 0.00 0.00 0.00 3.27
3291 3521 3.312421 ACATTGTTTCACCTGACGTTGAG 59.688 43.478 0.00 0.00 0.00 3.02
3292 3522 3.275143 ACATTGTTTCACCTGACGTTGA 58.725 40.909 0.00 0.00 0.00 3.18
3293 3523 3.691049 ACATTGTTTCACCTGACGTTG 57.309 42.857 0.00 0.00 0.00 4.10
3294 3524 3.692101 TCAACATTGTTTCACCTGACGTT 59.308 39.130 0.00 0.00 0.00 3.99
3295 3525 3.275143 TCAACATTGTTTCACCTGACGT 58.725 40.909 0.00 0.00 0.00 4.34
3296 3526 3.559655 TCTCAACATTGTTTCACCTGACG 59.440 43.478 0.00 0.00 0.00 4.35
3297 3527 4.576463 AGTCTCAACATTGTTTCACCTGAC 59.424 41.667 0.00 3.08 0.00 3.51
3298 3528 4.576053 CAGTCTCAACATTGTTTCACCTGA 59.424 41.667 0.00 0.00 0.00 3.86
3299 3529 4.261322 CCAGTCTCAACATTGTTTCACCTG 60.261 45.833 0.00 4.56 0.00 4.00
3300 3530 3.885297 CCAGTCTCAACATTGTTTCACCT 59.115 43.478 0.00 0.00 0.00 4.00
3301 3531 3.882888 TCCAGTCTCAACATTGTTTCACC 59.117 43.478 0.00 0.00 0.00 4.02
3302 3532 4.555511 GCTCCAGTCTCAACATTGTTTCAC 60.556 45.833 0.00 0.00 0.00 3.18
3303 3533 3.565482 GCTCCAGTCTCAACATTGTTTCA 59.435 43.478 0.00 0.00 0.00 2.69
3304 3534 3.364366 CGCTCCAGTCTCAACATTGTTTC 60.364 47.826 0.00 0.00 0.00 2.78
3305 3535 2.549754 CGCTCCAGTCTCAACATTGTTT 59.450 45.455 0.00 0.00 0.00 2.83
3306 3536 2.146342 CGCTCCAGTCTCAACATTGTT 58.854 47.619 0.00 0.00 0.00 2.83
3307 3537 1.070758 ACGCTCCAGTCTCAACATTGT 59.929 47.619 0.00 0.00 0.00 2.71
3308 3538 1.800805 ACGCTCCAGTCTCAACATTG 58.199 50.000 0.00 0.00 0.00 2.82
3309 3539 3.055819 ACATACGCTCCAGTCTCAACATT 60.056 43.478 0.00 0.00 0.00 2.71
3310 3540 2.497675 ACATACGCTCCAGTCTCAACAT 59.502 45.455 0.00 0.00 0.00 2.71
3311 3541 1.893137 ACATACGCTCCAGTCTCAACA 59.107 47.619 0.00 0.00 0.00 3.33
3312 3542 2.531206 GACATACGCTCCAGTCTCAAC 58.469 52.381 0.00 0.00 0.00 3.18
3313 3543 1.132453 CGACATACGCTCCAGTCTCAA 59.868 52.381 0.00 0.00 34.51 3.02
3314 3544 0.733150 CGACATACGCTCCAGTCTCA 59.267 55.000 0.00 0.00 34.51 3.27
3315 3545 0.029567 CCGACATACGCTCCAGTCTC 59.970 60.000 0.00 0.00 41.07 3.36
3316 3546 0.680280 ACCGACATACGCTCCAGTCT 60.680 55.000 0.00 0.00 41.07 3.24
3317 3547 0.525668 CACCGACATACGCTCCAGTC 60.526 60.000 0.00 0.00 41.07 3.51
3318 3548 0.963856 TCACCGACATACGCTCCAGT 60.964 55.000 0.00 0.00 41.07 4.00
3319 3549 0.172578 TTCACCGACATACGCTCCAG 59.827 55.000 0.00 0.00 41.07 3.86
3320 3550 0.108992 GTTCACCGACATACGCTCCA 60.109 55.000 0.00 0.00 41.07 3.86
3321 3551 1.138047 CGTTCACCGACATACGCTCC 61.138 60.000 0.00 0.00 41.07 4.70
3322 3552 0.179181 TCGTTCACCGACATACGCTC 60.179 55.000 0.00 0.00 41.60 5.03
3323 3553 1.878070 TCGTTCACCGACATACGCT 59.122 52.632 0.00 0.00 41.60 5.07
3324 3554 4.463597 TCGTTCACCGACATACGC 57.536 55.556 0.00 0.00 41.60 4.42
3332 3562 3.072598 CGACTGCATCGTTCACCG 58.927 61.111 9.48 0.00 46.25 4.94
3340 3570 1.734465 CAAAGGACTTCCGACTGCATC 59.266 52.381 0.00 0.00 42.08 3.91
3341 3571 1.611673 CCAAAGGACTTCCGACTGCAT 60.612 52.381 0.00 0.00 42.08 3.96
3342 3572 0.250295 CCAAAGGACTTCCGACTGCA 60.250 55.000 0.00 0.00 42.08 4.41
3343 3573 0.250338 ACCAAAGGACTTCCGACTGC 60.250 55.000 0.00 0.00 42.08 4.40
3344 3574 3.396260 TTACCAAAGGACTTCCGACTG 57.604 47.619 0.00 0.00 42.08 3.51
3345 3575 4.426736 TTTTACCAAAGGACTTCCGACT 57.573 40.909 0.00 0.00 42.08 4.18
3346 3576 5.009310 ACATTTTTACCAAAGGACTTCCGAC 59.991 40.000 0.00 0.00 42.08 4.79
3347 3577 5.134661 ACATTTTTACCAAAGGACTTCCGA 58.865 37.500 0.00 0.00 42.08 4.55
3348 3578 5.009210 TGACATTTTTACCAAAGGACTTCCG 59.991 40.000 0.00 0.00 42.08 4.30
3349 3579 6.399639 TGACATTTTTACCAAAGGACTTCC 57.600 37.500 0.00 0.00 0.00 3.46
3350 3580 5.920840 GCTGACATTTTTACCAAAGGACTTC 59.079 40.000 0.00 0.00 0.00 3.01
3351 3581 5.362430 TGCTGACATTTTTACCAAAGGACTT 59.638 36.000 0.00 0.00 0.00 3.01
3352 3582 4.892934 TGCTGACATTTTTACCAAAGGACT 59.107 37.500 0.00 0.00 0.00 3.85
3353 3583 5.195001 TGCTGACATTTTTACCAAAGGAC 57.805 39.130 0.00 0.00 0.00 3.85
3354 3584 5.860941 TTGCTGACATTTTTACCAAAGGA 57.139 34.783 0.00 0.00 0.00 3.36
3355 3585 7.354257 CAATTTGCTGACATTTTTACCAAAGG 58.646 34.615 0.00 0.00 0.00 3.11
3356 3586 7.354257 CCAATTTGCTGACATTTTTACCAAAG 58.646 34.615 0.00 0.00 0.00 2.77
3357 3587 6.261826 CCCAATTTGCTGACATTTTTACCAAA 59.738 34.615 0.00 0.00 0.00 3.28
3358 3588 5.762218 CCCAATTTGCTGACATTTTTACCAA 59.238 36.000 0.00 0.00 0.00 3.67
3359 3589 5.303971 CCCAATTTGCTGACATTTTTACCA 58.696 37.500 0.00 0.00 0.00 3.25
3360 3590 4.154015 GCCCAATTTGCTGACATTTTTACC 59.846 41.667 0.00 0.00 0.00 2.85
3361 3591 4.754114 TGCCCAATTTGCTGACATTTTTAC 59.246 37.500 0.00 0.00 0.00 2.01
3362 3592 4.754114 GTGCCCAATTTGCTGACATTTTTA 59.246 37.500 0.00 0.00 0.00 1.52
3363 3593 3.565063 GTGCCCAATTTGCTGACATTTTT 59.435 39.130 0.00 0.00 0.00 1.94
3364 3594 3.140623 GTGCCCAATTTGCTGACATTTT 58.859 40.909 0.00 0.00 0.00 1.82
3365 3595 2.369532 AGTGCCCAATTTGCTGACATTT 59.630 40.909 0.00 0.00 0.00 2.32
3366 3596 1.972795 AGTGCCCAATTTGCTGACATT 59.027 42.857 0.00 0.00 0.00 2.71
3367 3597 1.636148 AGTGCCCAATTTGCTGACAT 58.364 45.000 0.00 0.00 0.00 3.06
3368 3598 1.068895 CAAGTGCCCAATTTGCTGACA 59.931 47.619 0.00 0.00 0.00 3.58
3369 3599 1.069049 ACAAGTGCCCAATTTGCTGAC 59.931 47.619 0.00 0.00 0.00 3.51
3370 3600 1.412079 ACAAGTGCCCAATTTGCTGA 58.588 45.000 0.00 0.00 0.00 4.26
3371 3601 2.353011 CCTACAAGTGCCCAATTTGCTG 60.353 50.000 0.00 0.00 0.00 4.41
3372 3602 1.895131 CCTACAAGTGCCCAATTTGCT 59.105 47.619 0.00 0.00 0.00 3.91
3373 3603 1.892474 TCCTACAAGTGCCCAATTTGC 59.108 47.619 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.