Multiple sequence alignment - TraesCS4B01G208600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G208600 chr4B 100.000 4288 0 0 1 4288 445846539 445842252 0.000000e+00 7919.0
1 TraesCS4B01G208600 chr4B 91.176 238 20 1 4 241 496291506 496291270 5.350000e-84 322.0
2 TraesCS4B01G208600 chr4B 100.000 33 0 0 2892 2924 66169512 66169544 1.290000e-05 62.1
3 TraesCS4B01G208600 chr4A 92.222 3240 152 48 499 3716 104093309 104096470 0.000000e+00 4495.0
4 TraesCS4B01G208600 chr4D 93.778 2443 92 29 499 2924 360765448 360763049 0.000000e+00 3615.0
5 TraesCS4B01G208600 chr4D 94.711 605 24 3 2944 3545 360762935 360762336 0.000000e+00 933.0
6 TraesCS4B01G208600 chr4D 89.879 247 23 2 5 250 324442226 324442471 2.490000e-82 316.0
7 TraesCS4B01G208600 chr4D 88.652 141 12 4 258 397 360766173 360766036 7.370000e-38 169.0
8 TraesCS4B01G208600 chr4D 87.963 108 11 2 3582 3689 360761916 360761811 4.500000e-25 126.0
9 TraesCS4B01G208600 chr4D 97.727 44 1 0 444 487 306798439 306798482 4.600000e-10 76.8
10 TraesCS4B01G208600 chr2D 92.908 564 32 5 3732 4288 623306118 623305556 0.000000e+00 813.0
11 TraesCS4B01G208600 chr2D 97.143 35 1 0 444 478 81390087 81390053 4.630000e-05 60.2
12 TraesCS4B01G208600 chr6B 92.692 561 33 5 3733 4285 445849318 445849878 0.000000e+00 802.0
13 TraesCS4B01G208600 chr6B 88.115 244 25 2 3 246 20036875 20037114 1.950000e-73 287.0
14 TraesCS4B01G208600 chr3A 92.692 561 34 4 3732 4285 65351187 65351747 0.000000e+00 802.0
15 TraesCS4B01G208600 chr5B 92.540 563 35 5 3733 4288 442745348 442744786 0.000000e+00 800.0
16 TraesCS4B01G208600 chr5B 92.376 564 36 4 3732 4288 508125823 508125260 0.000000e+00 797.0
17 TraesCS4B01G208600 chr5B 92.362 563 36 4 3733 4288 273898400 273897838 0.000000e+00 795.0
18 TraesCS4B01G208600 chr5B 92.335 561 36 4 3732 4285 631783389 631783949 0.000000e+00 791.0
19 TraesCS4B01G208600 chr2B 92.500 560 35 5 3733 4285 508412552 508413111 0.000000e+00 795.0
20 TraesCS4B01G208600 chr2B 88.845 251 25 3 1 250 161729982 161729734 5.390000e-79 305.0
21 TraesCS4B01G208600 chr2B 88.115 244 27 2 1 242 434662929 434662686 5.430000e-74 289.0
22 TraesCS4B01G208600 chr7B 92.021 564 38 4 3732 4288 89971220 89970657 0.000000e+00 785.0
23 TraesCS4B01G208600 chr1D 91.093 247 21 1 1 246 149578960 149578714 2.470000e-87 333.0
24 TraesCS4B01G208600 chr1D 87.903 248 26 3 1 246 293329056 293329301 5.430000e-74 289.0
25 TraesCS4B01G208600 chr3B 89.919 248 23 2 1 246 412244557 412244310 6.920000e-83 318.0
26 TraesCS4B01G208600 chr6D 89.256 242 25 1 1 241 149099630 149099389 6.970000e-78 302.0
27 TraesCS4B01G208600 chr2A 100.000 29 0 0 2896 2924 101402044 101402072 2.000000e-03 54.7
28 TraesCS4B01G208600 chr5A 100.000 28 0 0 2897 2924 375575868 375575841 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G208600 chr4B 445842252 445846539 4287 True 7919.00 7919 100.000 1 4288 1 chr4B.!!$R1 4287
1 TraesCS4B01G208600 chr4A 104093309 104096470 3161 False 4495.00 4495 92.222 499 3716 1 chr4A.!!$F1 3217
2 TraesCS4B01G208600 chr4D 360761811 360766173 4362 True 1210.75 3615 91.276 258 3689 4 chr4D.!!$R1 3431
3 TraesCS4B01G208600 chr2D 623305556 623306118 562 True 813.00 813 92.908 3732 4288 1 chr2D.!!$R2 556
4 TraesCS4B01G208600 chr6B 445849318 445849878 560 False 802.00 802 92.692 3733 4285 1 chr6B.!!$F2 552
5 TraesCS4B01G208600 chr3A 65351187 65351747 560 False 802.00 802 92.692 3732 4285 1 chr3A.!!$F1 553
6 TraesCS4B01G208600 chr5B 442744786 442745348 562 True 800.00 800 92.540 3733 4288 1 chr5B.!!$R2 555
7 TraesCS4B01G208600 chr5B 508125260 508125823 563 True 797.00 797 92.376 3732 4288 1 chr5B.!!$R3 556
8 TraesCS4B01G208600 chr5B 273897838 273898400 562 True 795.00 795 92.362 3733 4288 1 chr5B.!!$R1 555
9 TraesCS4B01G208600 chr5B 631783389 631783949 560 False 791.00 791 92.335 3732 4285 1 chr5B.!!$F1 553
10 TraesCS4B01G208600 chr2B 508412552 508413111 559 False 795.00 795 92.500 3733 4285 1 chr2B.!!$F1 552
11 TraesCS4B01G208600 chr7B 89970657 89971220 563 True 785.00 785 92.021 3732 4288 1 chr7B.!!$R1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.107831 AGGCACGAGCAACCTTTGTA 59.892 50.000 7.26 0.00 44.61 2.41 F
414 416 0.179048 GGGCATCATCATGTGGACGA 60.179 55.000 0.00 0.00 31.86 4.20 F
437 989 0.247736 AAGACGAGACCATGCACCTC 59.752 55.000 0.00 0.00 0.00 3.85 F
716 1271 0.252421 ATCTGTGACTGCCTCTCCCA 60.252 55.000 0.00 0.00 0.00 4.37 F
1380 1943 0.457443 TCATGGTACTGAGCTCGCAG 59.543 55.000 9.64 4.96 41.63 5.18 F
2447 3015 1.153168 GACTGTGCCGCCATGGTAT 60.153 57.895 14.67 0.00 41.21 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 1892 0.033920 CTGGCCAAGGAAAAACAGCC 59.966 55.000 7.01 0.00 40.87 4.85 R
2114 2680 0.164647 GCTGCACGCTGTACAAGAAG 59.835 55.000 0.00 0.00 35.14 2.85 R
2414 2982 1.074405 ACAGTCCAGACCATGCATGTT 59.926 47.619 24.58 11.76 0.00 2.71 R
2438 3006 1.027357 CAAGGACTGCATACCATGGC 58.973 55.000 13.04 0.00 0.00 4.40 R
3033 3700 1.204146 ATGCATACGGAAGGGAGTGT 58.796 50.000 0.00 0.00 0.00 3.55 R
3549 4220 0.464373 ACCTCATTTCATCCGCGCAT 60.464 50.000 8.75 0.00 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.301505 CGTGGGAGACATGGGTTG 57.698 61.111 0.00 0.00 32.27 3.77
18 19 2.040544 CGTGGGAGACATGGGTTGC 61.041 63.158 0.00 0.00 32.27 4.17
19 20 2.040544 GTGGGAGACATGGGTTGCG 61.041 63.158 0.00 0.00 0.00 4.85
20 21 2.438434 GGGAGACATGGGTTGCGG 60.438 66.667 0.00 0.00 0.00 5.69
21 22 3.134127 GGAGACATGGGTTGCGGC 61.134 66.667 0.00 0.00 0.00 6.53
22 23 2.359850 GAGACATGGGTTGCGGCA 60.360 61.111 0.00 0.00 0.00 5.69
23 24 2.672996 AGACATGGGTTGCGGCAC 60.673 61.111 0.05 0.00 0.00 5.01
24 25 2.983030 GACATGGGTTGCGGCACA 60.983 61.111 0.05 0.00 0.00 4.57
25 26 3.267597 GACATGGGTTGCGGCACAC 62.268 63.158 0.05 4.45 0.00 3.82
26 27 2.985282 CATGGGTTGCGGCACACT 60.985 61.111 0.05 0.00 0.00 3.55
27 28 2.985282 ATGGGTTGCGGCACACTG 60.985 61.111 0.05 0.00 0.00 3.66
28 29 3.790416 ATGGGTTGCGGCACACTGT 62.790 57.895 0.05 0.00 0.00 3.55
29 30 2.281208 GGGTTGCGGCACACTGTA 60.281 61.111 0.05 0.00 0.00 2.74
30 31 1.674322 GGGTTGCGGCACACTGTAT 60.674 57.895 0.05 0.00 0.00 2.29
31 32 0.391927 GGGTTGCGGCACACTGTATA 60.392 55.000 0.05 0.00 0.00 1.47
32 33 1.663695 GGTTGCGGCACACTGTATAT 58.336 50.000 0.05 0.00 0.00 0.86
33 34 2.484065 GGGTTGCGGCACACTGTATATA 60.484 50.000 0.05 0.00 0.00 0.86
34 35 3.199677 GGTTGCGGCACACTGTATATAA 58.800 45.455 0.05 0.00 0.00 0.98
35 36 3.247648 GGTTGCGGCACACTGTATATAAG 59.752 47.826 0.05 0.00 0.00 1.73
36 37 2.479837 TGCGGCACACTGTATATAAGC 58.520 47.619 0.00 0.00 0.00 3.09
37 38 1.798813 GCGGCACACTGTATATAAGCC 59.201 52.381 0.00 0.00 37.32 4.35
39 40 3.107642 GGCACACTGTATATAAGCCGT 57.892 47.619 0.00 0.00 0.00 5.68
40 41 4.247267 GGCACACTGTATATAAGCCGTA 57.753 45.455 0.00 0.00 0.00 4.02
41 42 3.985925 GGCACACTGTATATAAGCCGTAC 59.014 47.826 0.00 0.00 0.00 3.67
42 43 3.985925 GCACACTGTATATAAGCCGTACC 59.014 47.826 0.00 0.00 0.00 3.34
43 44 4.553323 CACACTGTATATAAGCCGTACCC 58.447 47.826 0.00 0.00 0.00 3.69
44 45 3.575687 ACACTGTATATAAGCCGTACCCC 59.424 47.826 0.00 0.00 0.00 4.95
45 46 3.056322 CACTGTATATAAGCCGTACCCCC 60.056 52.174 0.00 0.00 0.00 5.40
60 61 3.574237 CCCCCTCCATAGCCAGGC 61.574 72.222 1.84 1.84 0.00 4.85
61 62 2.773918 CCCCTCCATAGCCAGGCA 60.774 66.667 15.80 0.00 0.00 4.75
62 63 2.512896 CCCTCCATAGCCAGGCAC 59.487 66.667 15.80 0.00 0.00 5.01
63 64 2.109799 CCTCCATAGCCAGGCACG 59.890 66.667 15.80 0.37 0.00 5.34
64 65 2.434843 CCTCCATAGCCAGGCACGA 61.435 63.158 15.80 1.78 0.00 4.35
65 66 1.068753 CTCCATAGCCAGGCACGAG 59.931 63.158 15.80 8.38 0.00 4.18
66 67 2.590007 CCATAGCCAGGCACGAGC 60.590 66.667 15.80 0.00 41.10 5.03
67 68 2.187685 CATAGCCAGGCACGAGCA 59.812 61.111 15.80 0.00 44.61 4.26
68 69 1.450134 CATAGCCAGGCACGAGCAA 60.450 57.895 15.80 0.00 44.61 3.91
69 70 1.450312 ATAGCCAGGCACGAGCAAC 60.450 57.895 15.80 0.00 44.61 4.17
70 71 2.876368 ATAGCCAGGCACGAGCAACC 62.876 60.000 15.80 0.00 44.61 3.77
72 73 2.281761 CCAGGCACGAGCAACCTT 60.282 61.111 7.26 0.00 44.61 3.50
73 74 1.898574 CCAGGCACGAGCAACCTTT 60.899 57.895 7.26 0.00 44.61 3.11
74 75 1.283793 CAGGCACGAGCAACCTTTG 59.716 57.895 7.26 0.00 44.61 2.77
75 76 1.152963 AGGCACGAGCAACCTTTGT 60.153 52.632 7.26 0.00 44.61 2.83
76 77 0.107831 AGGCACGAGCAACCTTTGTA 59.892 50.000 7.26 0.00 44.61 2.41
77 78 0.948678 GGCACGAGCAACCTTTGTAA 59.051 50.000 7.26 0.00 44.61 2.41
78 79 1.334689 GGCACGAGCAACCTTTGTAAC 60.335 52.381 7.26 0.00 44.61 2.50
79 80 1.334689 GCACGAGCAACCTTTGTAACC 60.335 52.381 0.00 0.00 41.58 2.85
80 81 1.944024 CACGAGCAACCTTTGTAACCA 59.056 47.619 0.00 0.00 0.00 3.67
81 82 2.552315 CACGAGCAACCTTTGTAACCAT 59.448 45.455 0.00 0.00 0.00 3.55
82 83 3.749088 CACGAGCAACCTTTGTAACCATA 59.251 43.478 0.00 0.00 0.00 2.74
83 84 3.749609 ACGAGCAACCTTTGTAACCATAC 59.250 43.478 0.00 0.00 0.00 2.39
84 85 3.749088 CGAGCAACCTTTGTAACCATACA 59.251 43.478 0.00 0.00 40.24 2.29
85 86 4.378046 CGAGCAACCTTTGTAACCATACAC 60.378 45.833 0.00 0.00 41.64 2.90
86 87 4.465886 AGCAACCTTTGTAACCATACACA 58.534 39.130 0.00 0.00 41.64 3.72
87 88 5.076873 AGCAACCTTTGTAACCATACACAT 58.923 37.500 0.00 0.00 41.64 3.21
88 89 5.183140 AGCAACCTTTGTAACCATACACATC 59.817 40.000 0.00 0.00 41.64 3.06
89 90 5.048364 GCAACCTTTGTAACCATACACATCA 60.048 40.000 0.00 0.00 41.64 3.07
90 91 6.515862 GCAACCTTTGTAACCATACACATCAA 60.516 38.462 0.00 0.00 41.64 2.57
91 92 7.429633 CAACCTTTGTAACCATACACATCAAA 58.570 34.615 0.00 0.00 41.64 2.69
92 93 7.775053 ACCTTTGTAACCATACACATCAAAT 57.225 32.000 0.00 0.00 41.64 2.32
93 94 7.826690 ACCTTTGTAACCATACACATCAAATC 58.173 34.615 0.00 0.00 41.64 2.17
94 95 7.450014 ACCTTTGTAACCATACACATCAAATCA 59.550 33.333 0.00 0.00 41.64 2.57
95 96 8.303156 CCTTTGTAACCATACACATCAAATCAA 58.697 33.333 0.00 0.00 41.64 2.57
96 97 9.689976 CTTTGTAACCATACACATCAAATCAAA 57.310 29.630 0.00 0.00 41.64 2.69
98 99 9.469807 TTGTAACCATACACATCAAATCAAAAC 57.530 29.630 0.00 0.00 41.64 2.43
99 100 8.633561 TGTAACCATACACATCAAATCAAAACA 58.366 29.630 0.00 0.00 37.11 2.83
100 101 9.469807 GTAACCATACACATCAAATCAAAACAA 57.530 29.630 0.00 0.00 32.02 2.83
101 102 8.592105 AACCATACACATCAAATCAAAACAAG 57.408 30.769 0.00 0.00 0.00 3.16
102 103 6.646240 ACCATACACATCAAATCAAAACAAGC 59.354 34.615 0.00 0.00 0.00 4.01
103 104 6.091169 CCATACACATCAAATCAAAACAAGCC 59.909 38.462 0.00 0.00 0.00 4.35
104 105 4.379652 ACACATCAAATCAAAACAAGCCC 58.620 39.130 0.00 0.00 0.00 5.19
105 106 3.747529 CACATCAAATCAAAACAAGCCCC 59.252 43.478 0.00 0.00 0.00 5.80
106 107 3.390639 ACATCAAATCAAAACAAGCCCCA 59.609 39.130 0.00 0.00 0.00 4.96
107 108 3.749665 TCAAATCAAAACAAGCCCCAG 57.250 42.857 0.00 0.00 0.00 4.45
108 109 2.368221 TCAAATCAAAACAAGCCCCAGG 59.632 45.455 0.00 0.00 0.00 4.45
109 110 2.368221 CAAATCAAAACAAGCCCCAGGA 59.632 45.455 0.00 0.00 0.00 3.86
110 111 1.632589 ATCAAAACAAGCCCCAGGAC 58.367 50.000 0.00 0.00 0.00 3.85
111 112 0.260230 TCAAAACAAGCCCCAGGACA 59.740 50.000 0.00 0.00 0.00 4.02
112 113 0.389025 CAAAACAAGCCCCAGGACAC 59.611 55.000 0.00 0.00 0.00 3.67
113 114 1.106944 AAAACAAGCCCCAGGACACG 61.107 55.000 0.00 0.00 0.00 4.49
114 115 1.990160 AAACAAGCCCCAGGACACGA 61.990 55.000 0.00 0.00 0.00 4.35
115 116 2.046892 CAAGCCCCAGGACACGAG 60.047 66.667 0.00 0.00 0.00 4.18
116 117 2.203788 AAGCCCCAGGACACGAGA 60.204 61.111 0.00 0.00 0.00 4.04
117 118 2.584391 AAGCCCCAGGACACGAGAC 61.584 63.158 0.00 0.00 0.00 3.36
118 119 4.436998 GCCCCAGGACACGAGACG 62.437 72.222 0.00 0.00 0.00 4.18
119 120 2.989824 CCCCAGGACACGAGACGT 60.990 66.667 0.00 0.00 42.36 4.34
120 121 1.676635 CCCCAGGACACGAGACGTA 60.677 63.158 0.00 0.00 38.32 3.57
121 122 1.654954 CCCCAGGACACGAGACGTAG 61.655 65.000 0.00 0.00 38.32 3.51
122 123 1.654954 CCCAGGACACGAGACGTAGG 61.655 65.000 0.00 0.00 38.32 3.18
123 124 1.654954 CCAGGACACGAGACGTAGGG 61.655 65.000 0.00 0.00 38.32 3.53
124 125 2.045131 AGGACACGAGACGTAGGGC 61.045 63.158 0.00 0.00 38.32 5.19
125 126 2.045131 GGACACGAGACGTAGGGCT 61.045 63.158 0.00 0.00 38.32 5.19
126 127 1.593296 GGACACGAGACGTAGGGCTT 61.593 60.000 0.00 0.00 38.32 4.35
127 128 0.243095 GACACGAGACGTAGGGCTTT 59.757 55.000 0.00 0.00 38.32 3.51
128 129 0.677842 ACACGAGACGTAGGGCTTTT 59.322 50.000 0.00 0.00 38.32 2.27
129 130 1.888512 ACACGAGACGTAGGGCTTTTA 59.111 47.619 0.00 0.00 38.32 1.52
130 131 2.494870 ACACGAGACGTAGGGCTTTTAT 59.505 45.455 0.00 0.00 38.32 1.40
131 132 3.114065 CACGAGACGTAGGGCTTTTATC 58.886 50.000 0.00 0.00 38.32 1.75
132 133 3.022406 ACGAGACGTAGGGCTTTTATCT 58.978 45.455 0.00 0.00 38.73 1.98
133 134 3.066481 ACGAGACGTAGGGCTTTTATCTC 59.934 47.826 0.00 0.00 38.73 2.75
134 135 3.550436 CGAGACGTAGGGCTTTTATCTCC 60.550 52.174 0.00 0.00 0.00 3.71
135 136 2.361438 AGACGTAGGGCTTTTATCTCCG 59.639 50.000 0.00 0.00 0.00 4.63
136 137 1.202498 ACGTAGGGCTTTTATCTCCGC 60.202 52.381 0.00 0.00 0.00 5.54
137 138 1.872653 CGTAGGGCTTTTATCTCCGCC 60.873 57.143 0.00 0.00 41.75 6.13
138 139 0.391597 TAGGGCTTTTATCTCCGCCG 59.608 55.000 0.00 0.00 43.38 6.46
139 140 1.145377 GGGCTTTTATCTCCGCCGA 59.855 57.895 0.00 0.00 43.38 5.54
140 141 0.880718 GGGCTTTTATCTCCGCCGAG 60.881 60.000 0.00 0.00 43.38 4.63
154 155 4.921834 CGAGAGGGGCTTGAACTC 57.078 61.111 0.00 0.00 0.00 3.01
155 156 1.153745 CGAGAGGGGCTTGAACTCG 60.154 63.158 0.00 0.00 42.77 4.18
156 157 1.878656 CGAGAGGGGCTTGAACTCGT 61.879 60.000 0.00 0.00 43.19 4.18
157 158 0.321996 GAGAGGGGCTTGAACTCGTT 59.678 55.000 0.00 0.00 36.40 3.85
158 159 1.549170 GAGAGGGGCTTGAACTCGTTA 59.451 52.381 0.00 0.00 36.40 3.18
159 160 1.975680 AGAGGGGCTTGAACTCGTTAA 59.024 47.619 0.00 0.00 36.40 2.01
160 161 2.370849 AGAGGGGCTTGAACTCGTTAAA 59.629 45.455 0.00 0.00 36.40 1.52
161 162 2.483106 GAGGGGCTTGAACTCGTTAAAC 59.517 50.000 0.00 0.00 0.00 2.01
162 163 2.158726 AGGGGCTTGAACTCGTTAAACA 60.159 45.455 0.00 0.00 0.00 2.83
163 164 2.031420 GGGGCTTGAACTCGTTAAACAC 60.031 50.000 0.00 0.00 0.00 3.32
164 165 2.031420 GGGCTTGAACTCGTTAAACACC 60.031 50.000 0.00 0.00 0.00 4.16
165 166 2.349155 GGCTTGAACTCGTTAAACACCG 60.349 50.000 0.00 0.00 0.00 4.94
166 167 2.540931 GCTTGAACTCGTTAAACACCGA 59.459 45.455 0.00 0.00 0.00 4.69
178 179 3.980583 ACACCGAGTGTTACACCTG 57.019 52.632 12.28 4.78 45.08 4.00
179 180 0.249741 ACACCGAGTGTTACACCTGC 60.250 55.000 12.28 1.41 45.08 4.85
180 181 1.006571 ACCGAGTGTTACACCTGCG 60.007 57.895 12.28 12.94 34.49 5.18
181 182 2.380410 CCGAGTGTTACACCTGCGC 61.380 63.158 12.28 0.00 34.49 6.09
182 183 2.380410 CGAGTGTTACACCTGCGCC 61.380 63.158 12.28 0.00 34.49 6.53
183 184 2.357034 AGTGTTACACCTGCGCCG 60.357 61.111 12.28 0.00 34.49 6.46
184 185 2.663852 GTGTTACACCTGCGCCGT 60.664 61.111 4.18 0.00 0.00 5.68
185 186 1.373246 GTGTTACACCTGCGCCGTA 60.373 57.895 4.18 0.00 0.00 4.02
186 187 1.080366 TGTTACACCTGCGCCGTAG 60.080 57.895 4.18 0.00 0.00 3.51
187 188 2.125832 TTACACCTGCGCCGTAGC 60.126 61.111 4.18 0.00 37.71 3.58
188 189 2.933401 TTACACCTGCGCCGTAGCA 61.933 57.895 4.18 2.14 45.96 3.49
194 195 2.657829 TGCGCCGTAGCAAGGTTA 59.342 55.556 4.18 0.00 45.06 2.85
195 196 1.219664 TGCGCCGTAGCAAGGTTAT 59.780 52.632 4.18 0.00 45.06 1.89
196 197 1.087202 TGCGCCGTAGCAAGGTTATG 61.087 55.000 4.18 0.00 45.06 1.90
197 198 1.641677 CGCCGTAGCAAGGTTATGC 59.358 57.895 0.00 0.00 46.78 3.14
207 208 2.293399 GCAAGGTTATGCCCCTTATTCG 59.707 50.000 0.00 0.00 40.35 3.34
208 209 3.551846 CAAGGTTATGCCCCTTATTCGT 58.448 45.455 0.00 0.00 40.35 3.85
209 210 4.710324 CAAGGTTATGCCCCTTATTCGTA 58.290 43.478 0.00 0.00 40.35 3.43
210 211 4.347360 AGGTTATGCCCCTTATTCGTAC 57.653 45.455 0.00 0.00 38.26 3.67
211 212 3.072038 AGGTTATGCCCCTTATTCGTACC 59.928 47.826 0.00 0.00 38.26 3.34
212 213 3.405831 GTTATGCCCCTTATTCGTACCC 58.594 50.000 0.00 0.00 0.00 3.69
213 214 0.769247 ATGCCCCTTATTCGTACCCC 59.231 55.000 0.00 0.00 0.00 4.95
214 215 0.326808 TGCCCCTTATTCGTACCCCT 60.327 55.000 0.00 0.00 0.00 4.79
215 216 1.062275 TGCCCCTTATTCGTACCCCTA 60.062 52.381 0.00 0.00 0.00 3.53
216 217 1.622312 GCCCCTTATTCGTACCCCTAG 59.378 57.143 0.00 0.00 0.00 3.02
217 218 2.968271 CCCCTTATTCGTACCCCTAGT 58.032 52.381 0.00 0.00 0.00 2.57
218 219 3.755155 GCCCCTTATTCGTACCCCTAGTA 60.755 52.174 0.00 0.00 0.00 1.82
219 220 3.829026 CCCCTTATTCGTACCCCTAGTAC 59.171 52.174 0.00 0.00 46.74 2.73
230 231 6.402456 GTACCCCTAGTACTCATTGTTAGG 57.598 45.833 0.00 0.00 46.69 2.69
231 232 5.216665 ACCCCTAGTACTCATTGTTAGGA 57.783 43.478 0.00 0.00 33.15 2.94
232 233 5.789535 ACCCCTAGTACTCATTGTTAGGAT 58.210 41.667 0.00 0.00 33.15 3.24
233 234 5.602978 ACCCCTAGTACTCATTGTTAGGATG 59.397 44.000 0.00 0.00 33.15 3.51
234 235 5.012148 CCCCTAGTACTCATTGTTAGGATGG 59.988 48.000 0.00 0.00 33.15 3.51
235 236 5.602978 CCCTAGTACTCATTGTTAGGATGGT 59.397 44.000 0.00 0.00 33.15 3.55
236 237 6.781014 CCCTAGTACTCATTGTTAGGATGGTA 59.219 42.308 0.00 0.00 33.15 3.25
237 238 7.289317 CCCTAGTACTCATTGTTAGGATGGTAA 59.711 40.741 0.00 0.00 33.15 2.85
238 239 8.142551 CCTAGTACTCATTGTTAGGATGGTAAC 58.857 40.741 0.00 0.00 33.15 2.50
239 240 6.885922 AGTACTCATTGTTAGGATGGTAACC 58.114 40.000 0.00 0.00 32.72 2.85
240 241 5.112129 ACTCATTGTTAGGATGGTAACCC 57.888 43.478 0.00 0.00 32.72 4.11
241 242 4.079958 ACTCATTGTTAGGATGGTAACCCC 60.080 45.833 0.00 0.00 32.72 4.95
242 243 3.203487 TCATTGTTAGGATGGTAACCCCC 59.797 47.826 0.00 0.00 32.72 5.40
243 244 2.362797 TGTTAGGATGGTAACCCCCA 57.637 50.000 0.00 0.00 39.27 4.96
244 245 1.917568 TGTTAGGATGGTAACCCCCAC 59.082 52.381 0.00 0.00 37.31 4.61
245 246 1.917568 GTTAGGATGGTAACCCCCACA 59.082 52.381 0.00 0.00 37.31 4.17
246 247 2.512476 GTTAGGATGGTAACCCCCACAT 59.488 50.000 0.00 0.00 37.31 3.21
247 248 0.926293 AGGATGGTAACCCCCACATG 59.074 55.000 0.00 0.00 37.31 3.21
248 249 0.629058 GGATGGTAACCCCCACATGT 59.371 55.000 0.00 0.00 37.31 3.21
249 250 1.684869 GGATGGTAACCCCCACATGTG 60.685 57.143 19.31 19.31 37.31 3.21
250 251 1.283613 GATGGTAACCCCCACATGTGA 59.716 52.381 27.46 2.67 37.31 3.58
251 252 1.377690 TGGTAACCCCCACATGTGAT 58.622 50.000 27.46 9.85 0.00 3.06
252 253 1.713647 TGGTAACCCCCACATGTGATT 59.286 47.619 27.46 16.42 0.00 2.57
253 254 2.291282 TGGTAACCCCCACATGTGATTC 60.291 50.000 27.46 9.41 0.00 2.52
254 255 2.291282 GGTAACCCCCACATGTGATTCA 60.291 50.000 27.46 4.21 0.00 2.57
255 256 2.925966 AACCCCCACATGTGATTCAT 57.074 45.000 27.46 7.45 37.22 2.57
290 291 2.554142 TGCACATGAAGAATCCGCTAG 58.446 47.619 0.00 0.00 0.00 3.42
297 298 2.497675 TGAAGAATCCGCTAGAGCTGTT 59.502 45.455 0.00 0.00 39.32 3.16
298 299 3.055819 TGAAGAATCCGCTAGAGCTGTTT 60.056 43.478 0.00 0.00 39.32 2.83
299 300 3.172229 AGAATCCGCTAGAGCTGTTTC 57.828 47.619 0.00 8.06 39.32 2.78
375 377 1.730446 GCGATTCTGCCAAAGTTGCTC 60.730 52.381 0.00 0.00 0.00 4.26
379 381 4.083324 CGATTCTGCCAAAGTTGCTCTAAA 60.083 41.667 0.00 0.00 0.00 1.85
382 384 5.789643 TCTGCCAAAGTTGCTCTAAAATT 57.210 34.783 0.00 0.00 0.00 1.82
397 399 9.268268 TGCTCTAAAATTATAACTCAATACGGG 57.732 33.333 0.00 0.00 0.00 5.28
399 401 9.268268 CTCTAAAATTATAACTCAATACGGGCA 57.732 33.333 0.00 0.00 0.00 5.36
400 402 9.787435 TCTAAAATTATAACTCAATACGGGCAT 57.213 29.630 0.00 0.00 0.00 4.40
403 405 8.635765 AAATTATAACTCAATACGGGCATCAT 57.364 30.769 0.00 0.00 0.00 2.45
404 406 7.849804 ATTATAACTCAATACGGGCATCATC 57.150 36.000 0.00 0.00 0.00 2.92
405 407 3.558931 AACTCAATACGGGCATCATCA 57.441 42.857 0.00 0.00 0.00 3.07
406 408 3.777106 ACTCAATACGGGCATCATCAT 57.223 42.857 0.00 0.00 0.00 2.45
408 410 3.181451 ACTCAATACGGGCATCATCATGT 60.181 43.478 0.00 0.00 31.86 3.21
410 412 2.189594 ATACGGGCATCATCATGTGG 57.810 50.000 0.00 0.00 31.86 4.17
411 413 1.127343 TACGGGCATCATCATGTGGA 58.873 50.000 0.00 0.00 31.86 4.02
412 414 0.464373 ACGGGCATCATCATGTGGAC 60.464 55.000 0.00 0.00 31.86 4.02
414 416 0.179048 GGGCATCATCATGTGGACGA 60.179 55.000 0.00 0.00 31.86 4.20
415 417 1.544093 GGGCATCATCATGTGGACGAT 60.544 52.381 0.00 0.00 31.86 3.73
416 418 2.224606 GGCATCATCATGTGGACGATT 58.775 47.619 0.00 0.00 31.86 3.34
422 974 6.653183 CATCATCATGTGGACGATTTAAGAC 58.347 40.000 0.00 0.00 0.00 3.01
426 978 4.157105 TCATGTGGACGATTTAAGACGAGA 59.843 41.667 9.63 0.00 0.00 4.04
430 982 3.446161 TGGACGATTTAAGACGAGACCAT 59.554 43.478 9.63 0.00 0.00 3.55
434 986 3.000322 CGATTTAAGACGAGACCATGCAC 60.000 47.826 0.00 0.00 0.00 4.57
435 987 2.380084 TTAAGACGAGACCATGCACC 57.620 50.000 0.00 0.00 0.00 5.01
436 988 1.557099 TAAGACGAGACCATGCACCT 58.443 50.000 0.00 0.00 0.00 4.00
437 989 0.247736 AAGACGAGACCATGCACCTC 59.752 55.000 0.00 0.00 0.00 3.85
438 990 1.153549 GACGAGACCATGCACCTCC 60.154 63.158 0.00 0.00 0.00 4.30
439 991 1.888436 GACGAGACCATGCACCTCCA 61.888 60.000 0.00 0.00 0.00 3.86
440 992 1.448540 CGAGACCATGCACCTCCAC 60.449 63.158 0.00 0.00 0.00 4.02
441 993 1.078143 GAGACCATGCACCTCCACC 60.078 63.158 0.00 0.00 0.00 4.61
442 994 1.841302 GAGACCATGCACCTCCACCA 61.841 60.000 0.00 0.00 0.00 4.17
443 995 1.377725 GACCATGCACCTCCACCAG 60.378 63.158 0.00 0.00 0.00 4.00
453 1005 1.132500 CCTCCACCAGGTTAGGATCC 58.868 60.000 11.25 2.48 37.53 3.36
454 1006 1.344496 CCTCCACCAGGTTAGGATCCT 60.344 57.143 20.48 20.48 37.53 3.24
455 1007 2.043227 CTCCACCAGGTTAGGATCCTC 58.957 57.143 20.22 4.44 35.89 3.71
456 1008 1.651770 TCCACCAGGTTAGGATCCTCT 59.348 52.381 20.22 6.58 35.89 3.69
457 1009 1.765314 CCACCAGGTTAGGATCCTCTG 59.235 57.143 20.22 18.89 32.37 3.35
458 1010 1.139853 CACCAGGTTAGGATCCTCTGC 59.860 57.143 20.22 9.52 32.37 4.26
459 1011 1.273838 ACCAGGTTAGGATCCTCTGCA 60.274 52.381 20.22 0.00 32.37 4.41
460 1012 1.415659 CCAGGTTAGGATCCTCTGCAG 59.584 57.143 20.22 7.63 32.37 4.41
461 1013 2.114616 CAGGTTAGGATCCTCTGCAGT 58.885 52.381 20.22 0.00 32.37 4.40
462 1014 3.300388 CAGGTTAGGATCCTCTGCAGTA 58.700 50.000 20.22 0.00 32.37 2.74
463 1015 3.068873 CAGGTTAGGATCCTCTGCAGTAC 59.931 52.174 20.22 6.17 32.37 2.73
464 1016 3.052490 AGGTTAGGATCCTCTGCAGTACT 60.052 47.826 20.22 2.48 0.00 2.73
465 1017 3.068873 GGTTAGGATCCTCTGCAGTACTG 59.931 52.174 20.22 18.93 0.00 2.74
466 1018 2.541233 AGGATCCTCTGCAGTACTGT 57.459 50.000 23.44 2.01 0.00 3.55
467 1019 3.671740 AGGATCCTCTGCAGTACTGTA 57.328 47.619 23.44 18.51 0.00 2.74
468 1020 3.292460 AGGATCCTCTGCAGTACTGTAC 58.708 50.000 23.44 9.93 0.00 2.90
469 1021 3.024547 GGATCCTCTGCAGTACTGTACA 58.975 50.000 23.44 13.04 0.00 2.90
470 1022 3.067461 GGATCCTCTGCAGTACTGTACAG 59.933 52.174 23.44 21.44 0.00 2.74
471 1023 3.156288 TCCTCTGCAGTACTGTACAGT 57.844 47.619 30.13 30.13 45.02 3.55
472 1024 2.820197 TCCTCTGCAGTACTGTACAGTG 59.180 50.000 33.77 20.54 42.52 3.66
473 1025 2.600731 CTCTGCAGTACTGTACAGTGC 58.399 52.381 33.77 31.87 42.52 4.40
487 1039 2.515926 CAGTGCTGTACAGTCACTGT 57.484 50.000 38.57 24.86 46.33 3.55
488 1040 3.643159 CAGTGCTGTACAGTCACTGTA 57.357 47.619 38.57 14.00 46.33 2.74
489 1041 4.179926 CAGTGCTGTACAGTCACTGTAT 57.820 45.455 38.57 24.18 46.56 2.29
490 1042 3.922850 CAGTGCTGTACAGTCACTGTATG 59.077 47.826 38.57 27.93 46.56 2.39
491 1043 3.574396 AGTGCTGTACAGTCACTGTATGT 59.426 43.478 33.12 19.08 46.56 2.29
492 1044 3.921021 GTGCTGTACAGTCACTGTATGTC 59.079 47.826 28.26 12.34 46.56 3.06
493 1045 3.572255 TGCTGTACAGTCACTGTATGTCA 59.428 43.478 20.64 12.82 46.56 3.58
494 1046 4.038642 TGCTGTACAGTCACTGTATGTCAA 59.961 41.667 20.64 3.91 46.56 3.18
495 1047 4.386049 GCTGTACAGTCACTGTATGTCAAC 59.614 45.833 20.64 9.92 46.56 3.18
496 1048 4.878439 TGTACAGTCACTGTATGTCAACC 58.122 43.478 20.64 6.73 46.56 3.77
497 1049 3.402628 ACAGTCACTGTATGTCAACCC 57.597 47.619 9.30 0.00 43.46 4.11
716 1271 0.252421 ATCTGTGACTGCCTCTCCCA 60.252 55.000 0.00 0.00 0.00 4.37
870 1426 3.369756 TGTTCGATTTACATTCTCGGTGC 59.630 43.478 0.00 0.00 33.38 5.01
924 1480 3.179048 GCTCGTCAAAGTTTTTGTTGCT 58.821 40.909 1.92 0.00 0.00 3.91
949 1505 4.112341 GCAGGAAGGCGCTGCTTG 62.112 66.667 7.64 4.90 40.58 4.01
1106 1665 3.624326 TTTCTGTTCTGTGCATTTCGG 57.376 42.857 0.00 0.00 0.00 4.30
1135 1694 3.938963 TGATTCCGCATTTCAACCTAGAC 59.061 43.478 0.00 0.00 0.00 2.59
1136 1695 3.695830 TTCCGCATTTCAACCTAGACT 57.304 42.857 0.00 0.00 0.00 3.24
1161 1720 9.553064 CTAGGTTTGCTGTTCTAAATATCTGAT 57.447 33.333 0.00 0.00 0.00 2.90
1253 1815 6.238925 GCTTTTCTTGTAACTGGTAATGTGGT 60.239 38.462 0.00 0.00 0.00 4.16
1254 1816 6.627395 TTTCTTGTAACTGGTAATGTGGTG 57.373 37.500 0.00 0.00 0.00 4.17
1255 1817 5.298989 TCTTGTAACTGGTAATGTGGTGT 57.701 39.130 0.00 0.00 0.00 4.16
1305 1868 9.563748 TTAAGCTGTTAACAATTACTTACCAGT 57.436 29.630 10.03 0.00 36.99 4.00
1306 1869 7.435068 AGCTGTTAACAATTACTTACCAGTG 57.565 36.000 10.03 0.00 34.06 3.66
1307 1870 6.996282 AGCTGTTAACAATTACTTACCAGTGT 59.004 34.615 10.03 0.00 34.06 3.55
1308 1871 7.501225 AGCTGTTAACAATTACTTACCAGTGTT 59.499 33.333 10.03 0.00 34.06 3.32
1309 1872 7.801783 GCTGTTAACAATTACTTACCAGTGTTC 59.198 37.037 10.03 0.00 34.06 3.18
1310 1873 8.967664 TGTTAACAATTACTTACCAGTGTTCT 57.032 30.769 5.64 0.00 34.06 3.01
1311 1874 9.398538 TGTTAACAATTACTTACCAGTGTTCTT 57.601 29.630 5.64 0.00 34.06 2.52
1315 1878 9.623000 AACAATTACTTACCAGTGTTCTTAGTT 57.377 29.630 0.00 0.00 34.06 2.24
1326 1889 9.832445 ACCAGTGTTCTTAGTTAACATATATGG 57.168 33.333 16.96 6.51 38.95 2.74
1327 1890 9.832445 CCAGTGTTCTTAGTTAACATATATGGT 57.168 33.333 16.96 13.06 38.95 3.55
1329 1892 9.745880 AGTGTTCTTAGTTAACATATATGGTCG 57.254 33.333 16.96 0.00 38.95 4.79
1330 1893 8.975439 GTGTTCTTAGTTAACATATATGGTCGG 58.025 37.037 16.96 0.00 38.95 4.79
1331 1894 7.654520 TGTTCTTAGTTAACATATATGGTCGGC 59.345 37.037 16.96 4.64 32.07 5.54
1332 1895 7.534723 TCTTAGTTAACATATATGGTCGGCT 57.465 36.000 16.96 11.14 0.00 5.52
1333 1896 7.375834 TCTTAGTTAACATATATGGTCGGCTG 58.624 38.462 16.96 1.34 0.00 4.85
1339 1902 5.751243 ACATATATGGTCGGCTGTTTTTC 57.249 39.130 16.96 0.00 0.00 2.29
1380 1943 0.457443 TCATGGTACTGAGCTCGCAG 59.543 55.000 9.64 4.96 41.63 5.18
1631 2197 2.032681 GGCTTCCTTGGACGCACT 59.967 61.111 17.78 0.00 0.00 4.40
1857 2423 1.334243 AGAGCGCTAGATACCGACAAC 59.666 52.381 11.50 0.00 0.00 3.32
1929 2495 7.048629 TGTTTTCAGATACAAATTTCAGGCA 57.951 32.000 0.00 0.00 0.00 4.75
1974 2540 8.621286 TCTCGAAAAAGGCAAGATTAATTATCC 58.379 33.333 0.00 0.00 33.45 2.59
2011 2577 4.679373 TGGCCAAAGCAAACTGATTTTA 57.321 36.364 0.61 0.00 42.56 1.52
2045 2611 4.813027 TCTTCAGTATGTAACCGACCAAC 58.187 43.478 0.00 0.00 37.40 3.77
2130 2696 1.227999 TGCCTTCTTGTACAGCGTGC 61.228 55.000 0.00 0.00 0.00 5.34
2197 2763 4.026356 ACCATTGGTTTCTTCTCCTGAG 57.974 45.455 1.37 0.00 27.29 3.35
2203 2769 1.893801 GTTTCTTCTCCTGAGTCCGGA 59.106 52.381 0.00 0.00 0.00 5.14
2253 2819 8.673711 TCCTTTGATATTTCTTGTGTAAATCCG 58.326 33.333 0.00 0.00 0.00 4.18
2305 2871 2.900546 AGACAACTAGCAGTGTAGCCTT 59.099 45.455 0.00 0.00 34.23 4.35
2373 2941 6.341316 AGTACCATAACAATCACACAGCTAG 58.659 40.000 0.00 0.00 0.00 3.42
2390 2958 3.074412 GCTAGTGGCTGTGCTCTTTTTA 58.926 45.455 0.00 0.00 38.06 1.52
2404 2972 7.148820 TGTGCTCTTTTTATTTCAATTAAGCGC 60.149 33.333 0.00 0.00 0.00 5.92
2414 2982 3.787785 TCAATTAAGCGCGTATCCAAGA 58.212 40.909 8.43 0.00 0.00 3.02
2438 3006 1.742880 CATGGTCTGGACTGTGCCG 60.743 63.158 0.00 0.00 0.00 5.69
2447 3015 1.153168 GACTGTGCCGCCATGGTAT 60.153 57.895 14.67 0.00 41.21 2.73
2607 3175 2.717044 GCCTGCCATGCTTGCATCA 61.717 57.895 4.99 1.36 38.22 3.07
2622 3190 6.147656 TGCTTGCATCAGGTAATTATCATACG 59.852 38.462 0.00 0.00 0.00 3.06
2669 3237 6.459066 TCATTTTGACAGTAGAGGACTTCAG 58.541 40.000 0.00 0.00 35.64 3.02
2675 3243 8.645814 TTGACAGTAGAGGACTTCAGTTATTA 57.354 34.615 0.00 0.00 35.64 0.98
2713 3281 8.888579 AATGTGTAATACCTGATAACTGTAGC 57.111 34.615 0.00 0.00 0.00 3.58
2742 3310 7.976175 TGTGATAGAGCAACTTAGTTGACATAG 59.024 37.037 26.94 1.50 45.28 2.23
2748 3316 6.055588 AGCAACTTAGTTGACATAGTGTTGT 58.944 36.000 26.94 0.00 45.28 3.32
2836 3404 8.408601 AGTTTATCCATGATTACAATGAAGCAC 58.591 33.333 0.00 0.00 0.00 4.40
2859 3427 5.032220 CCAAACGTGAAAGTTTTACCTCAC 58.968 41.667 5.05 0.36 41.84 3.51
2869 3437 7.606456 TGAAAGTTTTACCTCACTGCTTATAGG 59.394 37.037 0.00 0.00 35.14 2.57
2884 3452 9.944079 ACTGCTTATAGGGATATCATATACAGT 57.056 33.333 15.76 15.76 0.00 3.55
2886 3454 8.642432 TGCTTATAGGGATATCATATACAGTGC 58.358 37.037 4.83 8.51 0.00 4.40
2887 3455 8.642432 GCTTATAGGGATATCATATACAGTGCA 58.358 37.037 4.83 0.00 0.00 4.57
2888 3456 9.973450 CTTATAGGGATATCATATACAGTGCAC 57.027 37.037 9.40 9.40 0.00 4.57
2900 3473 1.973515 ACAGTGCACTTCTCTGATCCA 59.026 47.619 18.94 0.00 39.08 3.41
2924 3497 8.082852 CCATATTACTTGTCGCTCACTTAGTAT 58.917 37.037 0.00 0.00 0.00 2.12
2925 3498 9.464714 CATATTACTTGTCGCTCACTTAGTATT 57.535 33.333 0.00 0.00 0.00 1.89
2926 3499 7.757097 ATTACTTGTCGCTCACTTAGTATTG 57.243 36.000 0.00 0.00 0.00 1.90
2927 3500 5.135508 ACTTGTCGCTCACTTAGTATTGT 57.864 39.130 0.00 0.00 0.00 2.71
2928 3501 6.263516 ACTTGTCGCTCACTTAGTATTGTA 57.736 37.500 0.00 0.00 0.00 2.41
2929 3502 6.091437 ACTTGTCGCTCACTTAGTATTGTAC 58.909 40.000 0.00 0.00 0.00 2.90
2932 3505 7.381766 TGTCGCTCACTTAGTATTGTACTAA 57.618 36.000 8.74 8.74 46.03 2.24
2942 3515 3.446161 AGTATTGTACTAAGTGAGCGGCA 59.554 43.478 1.45 0.00 37.23 5.69
2947 3614 3.256383 TGTACTAAGTGAGCGGCAAGTAA 59.744 43.478 1.45 0.00 0.00 2.24
2955 3622 3.815401 GTGAGCGGCAAGTAATATGGATT 59.185 43.478 1.45 0.00 0.00 3.01
3033 3700 2.818751 ACCACTTTCACTTGGTTGGA 57.181 45.000 0.00 0.00 44.06 3.53
3126 3793 8.975663 ATTAATCTTGTGTCATGACATGAGAT 57.024 30.769 31.11 31.11 43.97 2.75
3277 3947 1.031571 GGCAGCGGTGAAATGGATGA 61.032 55.000 20.69 0.00 0.00 2.92
3291 3961 6.436847 TGAAATGGATGACATGGTGTAACATT 59.563 34.615 0.00 0.00 40.44 2.71
3376 4046 0.320421 GGGCACGAGCTGTTTAGTCA 60.320 55.000 4.48 0.00 41.70 3.41
3416 4086 3.593442 TGATGTGTTCCCAGTTCCTTT 57.407 42.857 0.00 0.00 0.00 3.11
3443 4114 4.114794 GTGATGTTTATGCATCCAAAGGC 58.885 43.478 0.19 0.00 43.28 4.35
3446 4117 3.164268 TGTTTATGCATCCAAAGGCTGT 58.836 40.909 0.19 0.00 32.14 4.40
3485 4156 7.446013 TGTTGAGTTTTATTTATCCTGACGGTT 59.554 33.333 0.00 0.00 0.00 4.44
3499 4170 5.043903 CCTGACGGTTAAGATCATGTACAG 58.956 45.833 0.33 0.00 0.00 2.74
3504 4175 4.629634 CGGTTAAGATCATGTACAGTGCAA 59.370 41.667 0.33 0.00 0.00 4.08
3521 4192 0.517316 CAAGGTGCGTAGAAAGGTGC 59.483 55.000 0.00 0.00 0.00 5.01
3522 4193 0.605589 AAGGTGCGTAGAAAGGTGCC 60.606 55.000 0.00 0.00 0.00 5.01
3536 4207 4.600692 AAGGTGCCTGTCAAAATAAACC 57.399 40.909 0.00 0.00 0.00 3.27
3549 4220 8.644216 TGTCAAAATAAACCAGACTAGAGTGTA 58.356 33.333 0.00 0.00 0.00 2.90
3553 4224 3.784701 AACCAGACTAGAGTGTATGCG 57.215 47.619 0.00 0.00 0.00 4.73
3554 4225 1.405821 ACCAGACTAGAGTGTATGCGC 59.594 52.381 0.00 0.00 0.00 6.09
3557 4228 0.661552 GACTAGAGTGTATGCGCGGA 59.338 55.000 8.83 5.00 0.00 5.54
3560 4231 1.266989 CTAGAGTGTATGCGCGGATGA 59.733 52.381 24.28 6.72 0.00 2.92
3561 4232 0.459899 AGAGTGTATGCGCGGATGAA 59.540 50.000 24.28 8.21 0.00 2.57
3563 4234 1.867233 GAGTGTATGCGCGGATGAAAT 59.133 47.619 24.28 10.20 0.00 2.17
3566 4237 1.866601 TGTATGCGCGGATGAAATGAG 59.133 47.619 24.28 0.00 0.00 2.90
3567 4238 1.195448 GTATGCGCGGATGAAATGAGG 59.805 52.381 24.28 0.00 0.00 3.86
3589 4643 3.251479 TGTCCTCATTTCATCTCCACG 57.749 47.619 0.00 0.00 0.00 4.94
3595 4649 1.258982 CATTTCATCTCCACGTAGCGC 59.741 52.381 0.00 0.00 0.00 5.92
3613 4667 2.916716 GCGCACAACCTCATTTTATGTG 59.083 45.455 0.30 0.00 43.17 3.21
3625 4679 6.098695 CCTCATTTTATGTGGGGATGAAATGT 59.901 38.462 0.00 0.00 39.02 2.71
3631 4685 1.550072 GTGGGGATGAAATGTGGTTGG 59.450 52.381 0.00 0.00 0.00 3.77
3675 4729 5.104109 GCCTGGCCCCATTCTTGTATATATA 60.104 44.000 7.66 0.00 0.00 0.86
3676 4730 6.410853 GCCTGGCCCCATTCTTGTATATATAT 60.411 42.308 7.66 0.00 0.00 0.86
3677 4731 7.000472 CCTGGCCCCATTCTTGTATATATATG 59.000 42.308 0.00 0.00 0.00 1.78
3682 4736 7.013655 GCCCCATTCTTGTATATATATGCCTTG 59.986 40.741 5.44 0.00 0.00 3.61
3700 4754 4.125703 CCTTGCATACTCTCATTCCACTC 58.874 47.826 0.00 0.00 0.00 3.51
3710 4764 0.621571 CATTCCACTCCCCCTCCTCA 60.622 60.000 0.00 0.00 0.00 3.86
3719 4773 3.411517 CCCTCCTCACCGCCCAAT 61.412 66.667 0.00 0.00 0.00 3.16
3720 4774 2.677228 CCTCCTCACCGCCCAATT 59.323 61.111 0.00 0.00 0.00 2.32
3721 4775 1.452108 CCTCCTCACCGCCCAATTC 60.452 63.158 0.00 0.00 0.00 2.17
3722 4776 1.815421 CTCCTCACCGCCCAATTCG 60.815 63.158 0.00 0.00 0.00 3.34
3730 4784 4.483243 GCCCAATTCGGAGCGGGA 62.483 66.667 4.32 0.00 41.62 5.14
3741 4795 1.603739 GAGCGGGAAAGGCCAACTT 60.604 57.895 5.01 0.00 42.52 2.66
3809 4863 3.094498 GGGTAGGGCGATGGGGTT 61.094 66.667 0.00 0.00 0.00 4.11
3876 4936 2.675075 CGTTTGCCCCATCCCGTT 60.675 61.111 0.00 0.00 0.00 4.44
4062 5124 3.281727 AACACATCTATCGGTTGCCAT 57.718 42.857 0.00 0.00 0.00 4.40
4257 5320 3.416119 GTCCTCGACGATCATGTTGTA 57.584 47.619 0.00 0.00 0.00 2.41
4260 5323 3.191791 TCCTCGACGATCATGTTGTACAA 59.808 43.478 3.59 3.59 0.00 2.41
4285 5348 1.696336 ACACAAGCAGTCATCACCTCT 59.304 47.619 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.040544 GCAACCCATGTCTCCCACG 61.041 63.158 0.00 0.00 0.00 4.94
1 2 2.040544 CGCAACCCATGTCTCCCAC 61.041 63.158 0.00 0.00 0.00 4.61
2 3 2.350895 CGCAACCCATGTCTCCCA 59.649 61.111 0.00 0.00 0.00 4.37
3 4 2.438434 CCGCAACCCATGTCTCCC 60.438 66.667 0.00 0.00 0.00 4.30
4 5 3.134127 GCCGCAACCCATGTCTCC 61.134 66.667 0.00 0.00 0.00 3.71
5 6 2.359850 TGCCGCAACCCATGTCTC 60.360 61.111 0.00 0.00 0.00 3.36
6 7 2.672996 GTGCCGCAACCCATGTCT 60.673 61.111 0.00 0.00 0.00 3.41
7 8 2.983030 TGTGCCGCAACCCATGTC 60.983 61.111 0.00 0.00 0.00 3.06
8 9 3.294493 GTGTGCCGCAACCCATGT 61.294 61.111 0.00 0.00 0.00 3.21
9 10 2.985282 AGTGTGCCGCAACCCATG 60.985 61.111 0.00 0.00 0.00 3.66
10 11 2.404566 TACAGTGTGCCGCAACCCAT 62.405 55.000 5.88 0.00 0.00 4.00
11 12 2.404566 ATACAGTGTGCCGCAACCCA 62.405 55.000 5.88 0.00 0.00 4.51
12 13 0.391927 TATACAGTGTGCCGCAACCC 60.392 55.000 5.88 0.00 0.00 4.11
13 14 1.663695 ATATACAGTGTGCCGCAACC 58.336 50.000 5.88 0.00 0.00 3.77
14 15 3.303132 GCTTATATACAGTGTGCCGCAAC 60.303 47.826 5.88 0.00 0.00 4.17
15 16 2.869801 GCTTATATACAGTGTGCCGCAA 59.130 45.455 5.88 0.00 0.00 4.85
16 17 2.479837 GCTTATATACAGTGTGCCGCA 58.520 47.619 5.88 0.00 0.00 5.69
17 18 1.798813 GGCTTATATACAGTGTGCCGC 59.201 52.381 5.88 0.00 0.00 6.53
19 20 3.107642 ACGGCTTATATACAGTGTGCC 57.892 47.619 5.88 8.02 35.94 5.01
20 21 3.985925 GGTACGGCTTATATACAGTGTGC 59.014 47.826 5.88 0.00 0.00 4.57
21 22 4.553323 GGGTACGGCTTATATACAGTGTG 58.447 47.826 5.88 0.00 0.00 3.82
22 23 3.575687 GGGGTACGGCTTATATACAGTGT 59.424 47.826 0.00 0.00 0.00 3.55
23 24 3.056322 GGGGGTACGGCTTATATACAGTG 60.056 52.174 0.00 0.00 0.00 3.66
24 25 3.168292 GGGGGTACGGCTTATATACAGT 58.832 50.000 0.00 0.00 0.00 3.55
25 26 3.881937 GGGGGTACGGCTTATATACAG 57.118 52.381 0.00 0.00 0.00 2.74
43 44 3.574237 GCCTGGCTATGGAGGGGG 61.574 72.222 12.43 0.00 0.00 5.40
44 45 2.773918 TGCCTGGCTATGGAGGGG 60.774 66.667 21.03 0.00 0.00 4.79
45 46 2.512896 GTGCCTGGCTATGGAGGG 59.487 66.667 21.03 0.00 0.00 4.30
46 47 2.109799 CGTGCCTGGCTATGGAGG 59.890 66.667 21.03 0.44 0.00 4.30
47 48 1.068753 CTCGTGCCTGGCTATGGAG 59.931 63.158 21.03 15.60 0.00 3.86
48 49 3.094062 GCTCGTGCCTGGCTATGGA 62.094 63.158 21.03 10.33 0.00 3.41
49 50 2.590007 GCTCGTGCCTGGCTATGG 60.590 66.667 21.03 8.85 0.00 2.74
50 51 1.450134 TTGCTCGTGCCTGGCTATG 60.450 57.895 21.03 11.57 38.71 2.23
51 52 1.450312 GTTGCTCGTGCCTGGCTAT 60.450 57.895 21.03 0.00 38.71 2.97
52 53 2.047274 GTTGCTCGTGCCTGGCTA 60.047 61.111 21.03 3.30 38.71 3.93
55 56 1.898574 AAAGGTTGCTCGTGCCTGG 60.899 57.895 7.05 0.00 38.71 4.45
56 57 1.283793 CAAAGGTTGCTCGTGCCTG 59.716 57.895 7.05 0.00 38.71 4.85
57 58 0.107831 TACAAAGGTTGCTCGTGCCT 59.892 50.000 7.05 0.00 38.71 4.75
58 59 0.948678 TTACAAAGGTTGCTCGTGCC 59.051 50.000 7.05 0.00 38.71 5.01
59 60 1.334689 GGTTACAAAGGTTGCTCGTGC 60.335 52.381 1.71 1.71 40.20 5.34
60 61 1.944024 TGGTTACAAAGGTTGCTCGTG 59.056 47.619 0.00 0.00 0.00 4.35
61 62 2.335316 TGGTTACAAAGGTTGCTCGT 57.665 45.000 0.00 0.00 0.00 4.18
62 63 3.749088 TGTATGGTTACAAAGGTTGCTCG 59.251 43.478 0.00 0.00 35.40 5.03
63 64 4.517453 TGTGTATGGTTACAAAGGTTGCTC 59.483 41.667 0.00 0.00 39.96 4.26
64 65 4.465886 TGTGTATGGTTACAAAGGTTGCT 58.534 39.130 0.00 0.00 39.96 3.91
65 66 4.839668 TGTGTATGGTTACAAAGGTTGC 57.160 40.909 0.00 0.00 39.96 4.17
66 67 6.567687 TGATGTGTATGGTTACAAAGGTTG 57.432 37.500 0.00 0.00 39.96 3.77
67 68 7.589958 TTTGATGTGTATGGTTACAAAGGTT 57.410 32.000 0.00 0.00 39.96 3.50
68 69 7.450014 TGATTTGATGTGTATGGTTACAAAGGT 59.550 33.333 0.00 0.00 39.96 3.50
69 70 7.825681 TGATTTGATGTGTATGGTTACAAAGG 58.174 34.615 0.00 0.00 39.96 3.11
70 71 9.689976 TTTGATTTGATGTGTATGGTTACAAAG 57.310 29.630 0.00 0.00 39.96 2.77
72 73 9.469807 GTTTTGATTTGATGTGTATGGTTACAA 57.530 29.630 0.00 0.00 39.96 2.41
73 74 8.633561 TGTTTTGATTTGATGTGTATGGTTACA 58.366 29.630 0.00 0.00 35.97 2.41
74 75 9.469807 TTGTTTTGATTTGATGTGTATGGTTAC 57.530 29.630 0.00 0.00 0.00 2.50
75 76 9.689976 CTTGTTTTGATTTGATGTGTATGGTTA 57.310 29.630 0.00 0.00 0.00 2.85
76 77 7.171337 GCTTGTTTTGATTTGATGTGTATGGTT 59.829 33.333 0.00 0.00 0.00 3.67
77 78 6.646240 GCTTGTTTTGATTTGATGTGTATGGT 59.354 34.615 0.00 0.00 0.00 3.55
78 79 6.091169 GGCTTGTTTTGATTTGATGTGTATGG 59.909 38.462 0.00 0.00 0.00 2.74
79 80 6.091169 GGGCTTGTTTTGATTTGATGTGTATG 59.909 38.462 0.00 0.00 0.00 2.39
80 81 6.165577 GGGCTTGTTTTGATTTGATGTGTAT 58.834 36.000 0.00 0.00 0.00 2.29
81 82 5.510520 GGGGCTTGTTTTGATTTGATGTGTA 60.511 40.000 0.00 0.00 0.00 2.90
82 83 4.379652 GGGCTTGTTTTGATTTGATGTGT 58.620 39.130 0.00 0.00 0.00 3.72
83 84 3.747529 GGGGCTTGTTTTGATTTGATGTG 59.252 43.478 0.00 0.00 0.00 3.21
84 85 3.390639 TGGGGCTTGTTTTGATTTGATGT 59.609 39.130 0.00 0.00 0.00 3.06
85 86 3.998341 CTGGGGCTTGTTTTGATTTGATG 59.002 43.478 0.00 0.00 0.00 3.07
86 87 3.008266 CCTGGGGCTTGTTTTGATTTGAT 59.992 43.478 0.00 0.00 0.00 2.57
87 88 2.368221 CCTGGGGCTTGTTTTGATTTGA 59.632 45.455 0.00 0.00 0.00 2.69
88 89 2.368221 TCCTGGGGCTTGTTTTGATTTG 59.632 45.455 0.00 0.00 0.00 2.32
89 90 2.368548 GTCCTGGGGCTTGTTTTGATTT 59.631 45.455 0.00 0.00 0.00 2.17
90 91 1.970640 GTCCTGGGGCTTGTTTTGATT 59.029 47.619 0.00 0.00 0.00 2.57
91 92 1.133199 TGTCCTGGGGCTTGTTTTGAT 60.133 47.619 0.00 0.00 0.00 2.57
92 93 0.260230 TGTCCTGGGGCTTGTTTTGA 59.740 50.000 0.00 0.00 0.00 2.69
93 94 0.389025 GTGTCCTGGGGCTTGTTTTG 59.611 55.000 0.00 0.00 0.00 2.44
94 95 1.106944 CGTGTCCTGGGGCTTGTTTT 61.107 55.000 0.00 0.00 0.00 2.43
95 96 1.528309 CGTGTCCTGGGGCTTGTTT 60.528 57.895 0.00 0.00 0.00 2.83
96 97 2.113139 CGTGTCCTGGGGCTTGTT 59.887 61.111 0.00 0.00 0.00 2.83
97 98 2.847234 TCGTGTCCTGGGGCTTGT 60.847 61.111 0.00 0.00 0.00 3.16
98 99 2.046892 CTCGTGTCCTGGGGCTTG 60.047 66.667 0.00 0.00 0.00 4.01
99 100 2.203788 TCTCGTGTCCTGGGGCTT 60.204 61.111 0.00 0.00 0.00 4.35
100 101 2.997897 GTCTCGTGTCCTGGGGCT 60.998 66.667 0.00 0.00 0.00 5.19
101 102 4.436998 CGTCTCGTGTCCTGGGGC 62.437 72.222 0.00 0.00 0.00 5.80
102 103 1.654954 CTACGTCTCGTGTCCTGGGG 61.655 65.000 0.00 0.00 41.39 4.96
103 104 1.654954 CCTACGTCTCGTGTCCTGGG 61.655 65.000 0.00 0.00 41.39 4.45
104 105 1.654954 CCCTACGTCTCGTGTCCTGG 61.655 65.000 0.00 0.00 41.39 4.45
105 106 1.801332 CCCTACGTCTCGTGTCCTG 59.199 63.158 0.00 0.00 41.39 3.86
106 107 2.045131 GCCCTACGTCTCGTGTCCT 61.045 63.158 0.00 0.00 41.39 3.85
107 108 1.593296 AAGCCCTACGTCTCGTGTCC 61.593 60.000 0.00 0.00 41.39 4.02
108 109 0.243095 AAAGCCCTACGTCTCGTGTC 59.757 55.000 0.00 0.00 41.39 3.67
109 110 0.677842 AAAAGCCCTACGTCTCGTGT 59.322 50.000 0.00 0.00 41.39 4.49
110 111 2.642139 TAAAAGCCCTACGTCTCGTG 57.358 50.000 0.00 0.00 41.39 4.35
111 112 3.022406 AGATAAAAGCCCTACGTCTCGT 58.978 45.455 0.00 0.00 44.35 4.18
112 113 3.550436 GGAGATAAAAGCCCTACGTCTCG 60.550 52.174 0.00 0.00 33.28 4.04
113 114 3.550436 CGGAGATAAAAGCCCTACGTCTC 60.550 52.174 0.00 0.00 30.17 3.36
114 115 2.361438 CGGAGATAAAAGCCCTACGTCT 59.639 50.000 0.00 0.00 30.17 4.18
115 116 2.740452 CGGAGATAAAAGCCCTACGTC 58.260 52.381 0.00 0.00 30.17 4.34
116 117 1.202498 GCGGAGATAAAAGCCCTACGT 60.202 52.381 0.00 0.00 36.67 3.57
117 118 1.499049 GCGGAGATAAAAGCCCTACG 58.501 55.000 0.00 0.00 37.32 3.51
118 119 1.872653 CGGCGGAGATAAAAGCCCTAC 60.873 57.143 0.00 0.00 46.36 3.18
119 120 0.391597 CGGCGGAGATAAAAGCCCTA 59.608 55.000 0.00 0.00 46.36 3.53
120 121 1.146263 CGGCGGAGATAAAAGCCCT 59.854 57.895 0.00 0.00 46.36 5.19
121 122 0.880718 CTCGGCGGAGATAAAAGCCC 60.881 60.000 15.82 0.00 46.36 5.19
122 123 0.104304 TCTCGGCGGAGATAAAAGCC 59.896 55.000 19.12 0.00 44.28 4.35
123 124 3.661745 TCTCGGCGGAGATAAAAGC 57.338 52.632 19.12 0.00 44.28 3.51
136 137 1.219393 GAGTTCAAGCCCCTCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
137 138 1.153745 CGAGTTCAAGCCCCTCTCG 60.154 63.158 0.00 0.00 41.02 4.04
138 139 0.321996 AACGAGTTCAAGCCCCTCTC 59.678 55.000 0.00 0.00 0.00 3.20
139 140 1.640917 TAACGAGTTCAAGCCCCTCT 58.359 50.000 0.00 0.00 0.00 3.69
140 141 2.467566 TTAACGAGTTCAAGCCCCTC 57.532 50.000 0.00 0.00 0.00 4.30
141 142 2.158726 TGTTTAACGAGTTCAAGCCCCT 60.159 45.455 0.00 0.00 0.00 4.79
142 143 2.031420 GTGTTTAACGAGTTCAAGCCCC 60.031 50.000 0.00 0.00 0.00 5.80
143 144 2.031420 GGTGTTTAACGAGTTCAAGCCC 60.031 50.000 0.00 0.00 0.00 5.19
144 145 2.349155 CGGTGTTTAACGAGTTCAAGCC 60.349 50.000 0.00 0.00 0.00 4.35
145 146 2.540931 TCGGTGTTTAACGAGTTCAAGC 59.459 45.455 0.00 0.00 34.67 4.01
161 162 1.282248 CGCAGGTGTAACACTCGGTG 61.282 60.000 0.00 2.92 39.98 4.94
162 163 1.006571 CGCAGGTGTAACACTCGGT 60.007 57.895 0.00 0.00 39.98 4.69
163 164 2.380410 GCGCAGGTGTAACACTCGG 61.380 63.158 0.30 0.00 39.98 4.63
164 165 2.380410 GGCGCAGGTGTAACACTCG 61.380 63.158 10.83 0.00 39.98 4.18
165 166 2.380410 CGGCGCAGGTGTAACACTC 61.380 63.158 10.83 0.00 39.98 3.51
166 167 1.808531 TACGGCGCAGGTGTAACACT 61.809 55.000 13.26 0.00 39.98 3.55
167 168 1.349259 CTACGGCGCAGGTGTAACAC 61.349 60.000 13.26 0.00 39.98 3.32
168 169 1.080366 CTACGGCGCAGGTGTAACA 60.080 57.895 13.26 0.00 39.98 2.41
169 170 2.450345 GCTACGGCGCAGGTGTAAC 61.450 63.158 13.26 0.00 0.00 2.50
170 171 2.125832 GCTACGGCGCAGGTGTAA 60.126 61.111 13.26 0.00 0.00 2.41
171 172 2.829043 CTTGCTACGGCGCAGGTGTA 62.829 60.000 13.26 6.68 41.55 2.90
172 173 4.308458 TTGCTACGGCGCAGGTGT 62.308 61.111 13.26 5.77 41.55 4.16
173 174 3.490759 CTTGCTACGGCGCAGGTG 61.491 66.667 13.26 5.08 41.55 4.00
174 175 4.760047 CCTTGCTACGGCGCAGGT 62.760 66.667 13.26 10.61 41.55 4.00
175 176 2.845752 TAACCTTGCTACGGCGCAGG 62.846 60.000 13.26 9.40 43.37 4.85
176 177 0.810031 ATAACCTTGCTACGGCGCAG 60.810 55.000 10.83 8.25 41.55 5.18
177 178 1.087202 CATAACCTTGCTACGGCGCA 61.087 55.000 10.83 0.00 42.25 6.09
178 179 1.641677 CATAACCTTGCTACGGCGC 59.358 57.895 6.90 0.00 42.25 6.53
179 180 1.641677 GCATAACCTTGCTACGGCG 59.358 57.895 4.80 4.80 42.25 6.46
180 181 1.444917 GGGCATAACCTTGCTACGGC 61.445 60.000 0.00 0.00 42.38 5.68
181 182 0.818040 GGGGCATAACCTTGCTACGG 60.818 60.000 0.00 0.00 42.38 4.02
182 183 0.180406 AGGGGCATAACCTTGCTACG 59.820 55.000 0.00 0.00 42.38 3.51
183 184 2.437085 AAGGGGCATAACCTTGCTAC 57.563 50.000 0.00 0.00 46.21 3.58
189 190 3.072038 GGTACGAATAAGGGGCATAACCT 59.928 47.826 0.00 0.00 40.96 3.50
190 191 3.405831 GGTACGAATAAGGGGCATAACC 58.594 50.000 0.00 0.00 37.93 2.85
191 192 3.405831 GGGTACGAATAAGGGGCATAAC 58.594 50.000 0.00 0.00 0.00 1.89
192 193 2.372837 GGGGTACGAATAAGGGGCATAA 59.627 50.000 0.00 0.00 0.00 1.90
193 194 1.980036 GGGGTACGAATAAGGGGCATA 59.020 52.381 0.00 0.00 0.00 3.14
194 195 0.769247 GGGGTACGAATAAGGGGCAT 59.231 55.000 0.00 0.00 0.00 4.40
195 196 0.326808 AGGGGTACGAATAAGGGGCA 60.327 55.000 0.00 0.00 0.00 5.36
196 197 1.622312 CTAGGGGTACGAATAAGGGGC 59.378 57.143 0.00 0.00 0.00 5.80
197 198 2.968271 ACTAGGGGTACGAATAAGGGG 58.032 52.381 0.00 0.00 0.00 4.79
208 209 6.345646 TCCTAACAATGAGTACTAGGGGTA 57.654 41.667 0.00 0.00 33.35 3.69
209 210 5.216665 TCCTAACAATGAGTACTAGGGGT 57.783 43.478 0.00 0.00 33.35 4.95
210 211 5.012148 CCATCCTAACAATGAGTACTAGGGG 59.988 48.000 0.00 0.00 33.35 4.79
211 212 5.602978 ACCATCCTAACAATGAGTACTAGGG 59.397 44.000 0.00 0.00 33.35 3.53
212 213 6.732896 ACCATCCTAACAATGAGTACTAGG 57.267 41.667 0.00 0.00 33.67 3.02
213 214 8.142551 GGTTACCATCCTAACAATGAGTACTAG 58.857 40.741 0.00 0.00 0.00 2.57
214 215 7.070322 GGGTTACCATCCTAACAATGAGTACTA 59.930 40.741 2.98 0.00 36.50 1.82
215 216 6.126854 GGGTTACCATCCTAACAATGAGTACT 60.127 42.308 2.98 0.00 36.50 2.73
216 217 6.053650 GGGTTACCATCCTAACAATGAGTAC 58.946 44.000 2.98 0.00 36.50 2.73
217 218 5.131475 GGGGTTACCATCCTAACAATGAGTA 59.869 44.000 2.98 0.00 39.85 2.59
218 219 4.079958 GGGGTTACCATCCTAACAATGAGT 60.080 45.833 2.98 0.00 39.85 3.41
219 220 4.461198 GGGGTTACCATCCTAACAATGAG 58.539 47.826 2.98 0.00 39.85 2.90
220 221 3.203487 GGGGGTTACCATCCTAACAATGA 59.797 47.826 2.98 0.00 42.91 2.57
221 222 3.053245 TGGGGGTTACCATCCTAACAATG 60.053 47.826 2.98 0.00 42.91 2.82
222 223 3.053170 GTGGGGGTTACCATCCTAACAAT 60.053 47.826 2.98 0.00 43.59 2.71
223 224 2.309458 GTGGGGGTTACCATCCTAACAA 59.691 50.000 2.98 0.00 43.59 2.83
224 225 1.917568 GTGGGGGTTACCATCCTAACA 59.082 52.381 2.98 0.00 43.59 2.41
225 226 1.917568 TGTGGGGGTTACCATCCTAAC 59.082 52.381 2.98 0.69 43.59 2.34
226 227 2.362797 TGTGGGGGTTACCATCCTAA 57.637 50.000 2.98 0.00 43.59 2.69
227 228 2.131854 CATGTGGGGGTTACCATCCTA 58.868 52.381 2.98 0.00 43.59 2.94
228 229 0.926293 CATGTGGGGGTTACCATCCT 59.074 55.000 2.98 0.00 43.59 3.24
229 230 0.629058 ACATGTGGGGGTTACCATCC 59.371 55.000 2.98 4.87 43.59 3.51
230 231 1.283613 TCACATGTGGGGGTTACCATC 59.716 52.381 25.16 0.00 43.59 3.51
231 232 1.377690 TCACATGTGGGGGTTACCAT 58.622 50.000 25.16 0.00 43.59 3.55
232 233 1.377690 ATCACATGTGGGGGTTACCA 58.622 50.000 25.16 3.22 42.91 3.25
233 234 2.291282 TGAATCACATGTGGGGGTTACC 60.291 50.000 25.16 0.00 39.11 2.85
234 235 3.080300 TGAATCACATGTGGGGGTTAC 57.920 47.619 25.16 10.55 0.00 2.50
236 237 2.925966 ATGAATCACATGTGGGGGTT 57.074 45.000 25.16 14.58 37.87 4.11
308 309 2.112380 TACCGTCGTATGGAGTGTCA 57.888 50.000 0.00 0.00 0.00 3.58
309 310 3.492421 TTTACCGTCGTATGGAGTGTC 57.508 47.619 0.00 0.00 0.00 3.67
310 311 3.940209 TTTTACCGTCGTATGGAGTGT 57.060 42.857 0.00 0.00 0.00 3.55
335 337 3.365820 CGCCAAATTCATTCAAACTGCTC 59.634 43.478 0.00 0.00 0.00 4.26
379 381 7.882791 TGATGATGCCCGTATTGAGTTATAATT 59.117 33.333 0.00 0.00 0.00 1.40
382 384 6.353404 TGATGATGCCCGTATTGAGTTATA 57.647 37.500 0.00 0.00 0.00 0.98
392 394 1.127343 TCCACATGATGATGCCCGTA 58.873 50.000 0.00 0.00 32.14 4.02
397 399 3.976793 AAATCGTCCACATGATGATGC 57.023 42.857 0.00 0.00 46.76 3.91
400 402 4.803613 CGTCTTAAATCGTCCACATGATGA 59.196 41.667 0.00 0.00 43.06 2.92
401 403 4.803613 TCGTCTTAAATCGTCCACATGATG 59.196 41.667 0.00 0.00 0.00 3.07
403 405 4.157105 TCTCGTCTTAAATCGTCCACATGA 59.843 41.667 0.00 0.00 0.00 3.07
404 406 4.265556 GTCTCGTCTTAAATCGTCCACATG 59.734 45.833 0.00 0.00 0.00 3.21
405 407 4.421948 GTCTCGTCTTAAATCGTCCACAT 58.578 43.478 0.00 0.00 0.00 3.21
406 408 3.366679 GGTCTCGTCTTAAATCGTCCACA 60.367 47.826 0.00 0.00 0.00 4.17
408 410 2.821378 TGGTCTCGTCTTAAATCGTCCA 59.179 45.455 0.00 0.00 0.00 4.02
410 412 3.243177 GCATGGTCTCGTCTTAAATCGTC 59.757 47.826 0.00 0.00 0.00 4.20
411 413 3.187700 GCATGGTCTCGTCTTAAATCGT 58.812 45.455 0.00 0.00 0.00 3.73
412 414 3.000322 GTGCATGGTCTCGTCTTAAATCG 60.000 47.826 0.00 0.00 0.00 3.34
414 416 3.055094 AGGTGCATGGTCTCGTCTTAAAT 60.055 43.478 0.00 0.00 0.00 1.40
415 417 2.301870 AGGTGCATGGTCTCGTCTTAAA 59.698 45.455 0.00 0.00 0.00 1.52
416 418 1.899814 AGGTGCATGGTCTCGTCTTAA 59.100 47.619 0.00 0.00 0.00 1.85
422 974 1.448540 GTGGAGGTGCATGGTCTCG 60.449 63.158 0.00 0.00 0.00 4.04
426 978 2.759114 CTGGTGGAGGTGCATGGT 59.241 61.111 0.00 0.00 0.00 3.55
434 986 5.567880 AGAGGATCCTAACCTGGTGGAGG 62.568 56.522 16.16 18.01 42.19 4.30
435 987 2.043227 GAGGATCCTAACCTGGTGGAG 58.957 57.143 16.16 6.98 37.93 3.86
436 988 1.651770 AGAGGATCCTAACCTGGTGGA 59.348 52.381 16.16 8.23 37.93 4.02
437 989 1.765314 CAGAGGATCCTAACCTGGTGG 59.235 57.143 16.16 0.00 37.93 4.61
438 990 1.139853 GCAGAGGATCCTAACCTGGTG 59.860 57.143 23.54 11.35 37.93 4.17
439 991 1.273838 TGCAGAGGATCCTAACCTGGT 60.274 52.381 23.54 0.00 37.93 4.00
440 992 1.415659 CTGCAGAGGATCCTAACCTGG 59.584 57.143 23.54 9.75 37.93 4.45
441 993 2.114616 ACTGCAGAGGATCCTAACCTG 58.885 52.381 23.35 18.52 37.93 4.00
442 994 2.559381 ACTGCAGAGGATCCTAACCT 57.441 50.000 23.35 4.73 40.80 3.50
443 995 3.068873 CAGTACTGCAGAGGATCCTAACC 59.931 52.174 23.35 1.92 33.66 2.85
444 996 3.702045 ACAGTACTGCAGAGGATCCTAAC 59.298 47.826 23.35 7.75 33.66 2.34
445 997 3.982516 ACAGTACTGCAGAGGATCCTAA 58.017 45.455 23.35 0.00 33.66 2.69
446 998 3.671740 ACAGTACTGCAGAGGATCCTA 57.328 47.619 23.35 0.00 33.66 2.94
447 999 2.541233 ACAGTACTGCAGAGGATCCT 57.459 50.000 23.35 16.13 33.66 3.24
448 1000 3.024547 TGTACAGTACTGCAGAGGATCC 58.975 50.000 23.35 2.48 33.66 3.36
449 1001 3.697045 ACTGTACAGTACTGCAGAGGATC 59.303 47.826 26.91 5.55 40.43 3.36
450 1002 3.445450 CACTGTACAGTACTGCAGAGGAT 59.555 47.826 27.48 10.38 40.20 3.24
451 1003 2.820197 CACTGTACAGTACTGCAGAGGA 59.180 50.000 27.48 1.69 40.20 3.71
452 1004 2.672478 GCACTGTACAGTACTGCAGAGG 60.672 54.545 27.48 20.82 40.20 3.69
453 1005 2.230025 AGCACTGTACAGTACTGCAGAG 59.770 50.000 28.48 22.57 40.20 3.35
454 1006 2.029918 CAGCACTGTACAGTACTGCAGA 60.030 50.000 32.91 13.67 43.45 4.26
455 1007 2.332104 CAGCACTGTACAGTACTGCAG 58.668 52.381 32.91 22.92 43.45 4.41
456 1008 2.438868 CAGCACTGTACAGTACTGCA 57.561 50.000 32.91 12.39 43.45 4.41
466 1018 3.643159 CAGTGACTGTACAGCACTGTA 57.357 47.619 38.57 18.08 46.33 2.74
467 1019 2.515926 CAGTGACTGTACAGCACTGT 57.484 50.000 38.57 24.86 46.33 3.55
478 1030 2.615493 GGGGGTTGACATACAGTGACTG 60.615 54.545 11.70 11.70 37.52 3.51
479 1031 1.628846 GGGGGTTGACATACAGTGACT 59.371 52.381 0.00 0.00 0.00 3.41
480 1032 1.628846 AGGGGGTTGACATACAGTGAC 59.371 52.381 0.00 0.00 0.00 3.67
481 1033 2.038863 AGGGGGTTGACATACAGTGA 57.961 50.000 0.00 0.00 0.00 3.41
482 1034 2.618045 GGAAGGGGGTTGACATACAGTG 60.618 54.545 0.00 0.00 0.00 3.66
483 1035 1.633945 GGAAGGGGGTTGACATACAGT 59.366 52.381 0.00 0.00 0.00 3.55
484 1036 1.633432 TGGAAGGGGGTTGACATACAG 59.367 52.381 0.00 0.00 0.00 2.74
485 1037 1.353022 GTGGAAGGGGGTTGACATACA 59.647 52.381 0.00 0.00 0.00 2.29
486 1038 1.340697 GGTGGAAGGGGGTTGACATAC 60.341 57.143 0.00 0.00 0.00 2.39
487 1039 0.996583 GGTGGAAGGGGGTTGACATA 59.003 55.000 0.00 0.00 0.00 2.29
488 1040 1.071314 TGGTGGAAGGGGGTTGACAT 61.071 55.000 0.00 0.00 0.00 3.06
489 1041 1.698116 TGGTGGAAGGGGGTTGACA 60.698 57.895 0.00 0.00 0.00 3.58
490 1042 1.228459 GTGGTGGAAGGGGGTTGAC 60.228 63.158 0.00 0.00 0.00 3.18
491 1043 1.071314 ATGTGGTGGAAGGGGGTTGA 61.071 55.000 0.00 0.00 0.00 3.18
492 1044 0.899717 CATGTGGTGGAAGGGGGTTG 60.900 60.000 0.00 0.00 0.00 3.77
493 1045 1.071314 TCATGTGGTGGAAGGGGGTT 61.071 55.000 0.00 0.00 0.00 4.11
494 1046 1.465188 TCATGTGGTGGAAGGGGGT 60.465 57.895 0.00 0.00 0.00 4.95
495 1047 1.000896 GTCATGTGGTGGAAGGGGG 60.001 63.158 0.00 0.00 0.00 5.40
496 1048 1.377202 CGTCATGTGGTGGAAGGGG 60.377 63.158 0.00 0.00 0.00 4.79
497 1049 2.040544 GCGTCATGTGGTGGAAGGG 61.041 63.158 0.00 0.00 0.00 3.95
716 1271 1.666209 CGCGAATTCAGGGCCCAATT 61.666 55.000 27.56 21.89 0.00 2.32
870 1426 0.321653 CCCACTGAAACCGAAGAGGG 60.322 60.000 0.00 0.00 46.96 4.30
900 1456 1.064952 ACAAAAACTTTGACGAGCCCG 59.935 47.619 6.15 0.00 42.50 6.13
949 1505 0.462047 CAGGTGTAAGATGGGTCGCC 60.462 60.000 0.00 0.00 0.00 5.54
951 1507 0.902531 ACCAGGTGTAAGATGGGTCG 59.097 55.000 0.00 0.00 38.48 4.79
952 1508 1.065418 CCACCAGGTGTAAGATGGGTC 60.065 57.143 18.82 0.00 38.48 4.46
973 1529 3.632080 CGGCCACCACCACCACTA 61.632 66.667 2.24 0.00 0.00 2.74
1135 1694 8.948631 TCAGATATTTAGAACAGCAAACCTAG 57.051 34.615 0.00 0.00 0.00 3.02
1136 1695 9.547753 GATCAGATATTTAGAACAGCAAACCTA 57.452 33.333 0.00 0.00 0.00 3.08
1139 1698 7.283127 TGGGATCAGATATTTAGAACAGCAAAC 59.717 37.037 0.00 0.00 0.00 2.93
1161 1720 2.687425 CACACAACACAAGTGAATGGGA 59.313 45.455 15.88 0.00 40.16 4.37
1300 1863 9.832445 CCATATATGTTAACTAAGAACACTGGT 57.168 33.333 11.73 0.00 39.51 4.00
1301 1864 9.832445 ACCATATATGTTAACTAAGAACACTGG 57.168 33.333 11.73 5.18 39.51 4.00
1303 1866 9.745880 CGACCATATATGTTAACTAAGAACACT 57.254 33.333 11.73 0.00 39.51 3.55
1304 1867 8.975439 CCGACCATATATGTTAACTAAGAACAC 58.025 37.037 11.73 0.00 39.51 3.32
1305 1868 7.654520 GCCGACCATATATGTTAACTAAGAACA 59.345 37.037 11.73 0.00 40.88 3.18
1306 1869 7.871463 AGCCGACCATATATGTTAACTAAGAAC 59.129 37.037 11.73 0.00 0.00 3.01
1307 1870 7.870954 CAGCCGACCATATATGTTAACTAAGAA 59.129 37.037 11.73 0.00 0.00 2.52
1308 1871 7.014905 ACAGCCGACCATATATGTTAACTAAGA 59.985 37.037 11.73 0.00 0.00 2.10
1309 1872 7.152645 ACAGCCGACCATATATGTTAACTAAG 58.847 38.462 11.73 0.00 0.00 2.18
1310 1873 7.058023 ACAGCCGACCATATATGTTAACTAA 57.942 36.000 11.73 0.00 0.00 2.24
1311 1874 6.659745 ACAGCCGACCATATATGTTAACTA 57.340 37.500 11.73 0.00 0.00 2.24
1312 1875 5.546621 ACAGCCGACCATATATGTTAACT 57.453 39.130 11.73 0.21 0.00 2.24
1313 1876 6.613755 AAACAGCCGACCATATATGTTAAC 57.386 37.500 11.73 0.00 31.09 2.01
1314 1877 7.201750 GGAAAAACAGCCGACCATATATGTTAA 60.202 37.037 11.73 0.00 31.09 2.01
1315 1878 6.261381 GGAAAAACAGCCGACCATATATGTTA 59.739 38.462 11.73 0.00 31.09 2.41
1316 1879 5.067283 GGAAAAACAGCCGACCATATATGTT 59.933 40.000 11.73 0.00 32.55 2.71
1317 1880 4.578928 GGAAAAACAGCCGACCATATATGT 59.421 41.667 11.73 0.18 0.00 2.29
1318 1881 4.821805 AGGAAAAACAGCCGACCATATATG 59.178 41.667 5.68 5.68 0.00 1.78
1319 1882 5.048846 AGGAAAAACAGCCGACCATATAT 57.951 39.130 0.00 0.00 0.00 0.86
1320 1883 4.497291 AGGAAAAACAGCCGACCATATA 57.503 40.909 0.00 0.00 0.00 0.86
1321 1884 3.366052 AGGAAAAACAGCCGACCATAT 57.634 42.857 0.00 0.00 0.00 1.78
1322 1885 2.817258 CAAGGAAAAACAGCCGACCATA 59.183 45.455 0.00 0.00 0.00 2.74
1323 1886 1.613437 CAAGGAAAAACAGCCGACCAT 59.387 47.619 0.00 0.00 0.00 3.55
1324 1887 1.028905 CAAGGAAAAACAGCCGACCA 58.971 50.000 0.00 0.00 0.00 4.02
1325 1888 0.313987 CCAAGGAAAAACAGCCGACC 59.686 55.000 0.00 0.00 0.00 4.79
1326 1889 0.318699 GCCAAGGAAAAACAGCCGAC 60.319 55.000 0.00 0.00 0.00 4.79
1327 1890 1.460273 GGCCAAGGAAAAACAGCCGA 61.460 55.000 0.00 0.00 0.00 5.54
1328 1891 1.006220 GGCCAAGGAAAAACAGCCG 60.006 57.895 0.00 0.00 0.00 5.52
1329 1892 0.033920 CTGGCCAAGGAAAAACAGCC 59.966 55.000 7.01 0.00 40.87 4.85
1330 1893 0.752658 ACTGGCCAAGGAAAAACAGC 59.247 50.000 7.01 0.00 0.00 4.40
1331 1894 2.695147 AGAACTGGCCAAGGAAAAACAG 59.305 45.455 7.01 0.00 0.00 3.16
1332 1895 2.745968 AGAACTGGCCAAGGAAAAACA 58.254 42.857 7.01 0.00 0.00 2.83
1333 1896 3.118775 ACAAGAACTGGCCAAGGAAAAAC 60.119 43.478 7.01 0.00 0.00 2.43
1339 1902 1.610522 CAGAACAAGAACTGGCCAAGG 59.389 52.381 7.01 0.00 0.00 3.61
1380 1943 3.365364 CCAAAAAGTTCGGAGACATCTGC 60.365 47.826 0.00 0.00 34.32 4.26
1468 2034 3.424433 CCGAGCAATCCGACAAAAGTTAC 60.424 47.826 0.00 0.00 0.00 2.50
1857 2423 0.543277 TAGAAGGAGCATGTGGGCTG 59.457 55.000 0.00 0.00 45.99 4.85
1929 2495 3.325753 GGGGTGCTCCTCTGCTGT 61.326 66.667 4.53 0.00 35.33 4.40
1974 2540 4.734398 TGGCCATAATGCACCTTAAAAG 57.266 40.909 0.00 0.00 0.00 2.27
2045 2611 2.231215 AGCCTCAAACTGCGCTATAG 57.769 50.000 9.73 0.00 0.00 1.31
2114 2680 0.164647 GCTGCACGCTGTACAAGAAG 59.835 55.000 0.00 0.00 35.14 2.85
2116 2682 3.951332 GCTGCACGCTGTACAAGA 58.049 55.556 0.00 0.00 35.14 3.02
2197 2763 3.622166 TTCATTACCTCCTTTCCGGAC 57.378 47.619 1.83 0.00 36.69 4.79
2203 2769 8.749354 GGAACACATTTATTCATTACCTCCTTT 58.251 33.333 0.00 0.00 0.00 3.11
2279 2845 4.156190 GCTACACTGCTAGTTGTCTAGTCA 59.844 45.833 4.56 0.00 43.86 3.41
2320 2886 5.189180 GGCTGACTAATGAAATTCCAGAGT 58.811 41.667 0.00 0.00 37.87 3.24
2373 2941 4.870363 TGAAATAAAAAGAGCACAGCCAC 58.130 39.130 0.00 0.00 0.00 5.01
2383 2951 9.217223 GATACGCGCTTAATTGAAATAAAAAGA 57.783 29.630 5.73 0.00 0.00 2.52
2390 2958 5.295787 TCTTGGATACGCGCTTAATTGAAAT 59.704 36.000 5.73 0.00 42.51 2.17
2404 2972 2.945008 ACCATGCATGTTCTTGGATACG 59.055 45.455 24.58 7.67 42.51 3.06
2414 2982 1.074405 ACAGTCCAGACCATGCATGTT 59.926 47.619 24.58 11.76 0.00 2.71
2438 3006 1.027357 CAAGGACTGCATACCATGGC 58.973 55.000 13.04 0.00 0.00 4.40
2447 3015 5.592282 TGAAATACTGAAAACAAGGACTGCA 59.408 36.000 0.00 0.00 0.00 4.41
2515 3083 6.936335 TCAACTCATTCTCTGTCATTTTGCTA 59.064 34.615 0.00 0.00 0.00 3.49
2531 3099 1.953559 ACACTGCACGTCAACTCATT 58.046 45.000 0.00 0.00 0.00 2.57
2569 3137 2.483714 GCTTCTCAATAGATCACCCGCA 60.484 50.000 0.00 0.00 0.00 5.69
2607 3175 7.766278 GCAAGATGATCCGTATGATAATTACCT 59.234 37.037 0.00 0.00 32.41 3.08
2622 3190 5.382618 AGAAAACAACTGCAAGATGATCC 57.617 39.130 0.00 0.00 39.37 3.36
2713 3281 6.090088 GTCAACTAAGTTGCTCTATCACAGTG 59.910 42.308 0.00 0.00 42.55 3.66
2742 3310 6.509418 TGCTTATAGGAAATTGGACAACAC 57.491 37.500 0.00 0.00 0.00 3.32
2748 3316 6.792473 TCCTAGGATGCTTATAGGAAATTGGA 59.208 38.462 7.62 0.00 41.62 3.53
2836 3404 5.032220 GTGAGGTAAAACTTTCACGTTTGG 58.968 41.667 0.00 0.00 37.20 3.28
2869 3437 7.758980 CAGAGAAGTGCACTGTATATGATATCC 59.241 40.741 22.49 4.47 31.49 2.59
2883 3451 6.520272 AGTAATATGGATCAGAGAAGTGCAC 58.480 40.000 9.40 9.40 0.00 4.57
2884 3452 6.737720 AGTAATATGGATCAGAGAAGTGCA 57.262 37.500 0.00 0.00 0.00 4.57
2885 3453 6.989169 ACAAGTAATATGGATCAGAGAAGTGC 59.011 38.462 0.00 0.00 0.00 4.40
2886 3454 7.380870 CGACAAGTAATATGGATCAGAGAAGTG 59.619 40.741 0.00 0.00 0.00 3.16
2887 3455 7.429633 CGACAAGTAATATGGATCAGAGAAGT 58.570 38.462 0.00 0.00 0.00 3.01
2888 3456 6.364706 GCGACAAGTAATATGGATCAGAGAAG 59.635 42.308 0.00 0.00 0.00 2.85
2900 3473 9.464714 CAATACTAAGTGAGCGACAAGTAATAT 57.535 33.333 0.00 0.00 32.24 1.28
2924 3497 2.036733 ACTTGCCGCTCACTTAGTACAA 59.963 45.455 0.00 0.00 0.00 2.41
2925 3498 1.616865 ACTTGCCGCTCACTTAGTACA 59.383 47.619 0.00 0.00 0.00 2.90
2926 3499 2.365408 ACTTGCCGCTCACTTAGTAC 57.635 50.000 0.00 0.00 0.00 2.73
2927 3500 4.730949 ATTACTTGCCGCTCACTTAGTA 57.269 40.909 0.00 0.00 0.00 1.82
2928 3501 3.611766 ATTACTTGCCGCTCACTTAGT 57.388 42.857 0.00 0.00 0.00 2.24
2929 3502 4.449068 CCATATTACTTGCCGCTCACTTAG 59.551 45.833 0.00 0.00 0.00 2.18
2932 3505 2.434336 TCCATATTACTTGCCGCTCACT 59.566 45.455 0.00 0.00 0.00 3.41
2933 3506 2.833794 TCCATATTACTTGCCGCTCAC 58.166 47.619 0.00 0.00 0.00 3.51
2934 3507 3.769739 ATCCATATTACTTGCCGCTCA 57.230 42.857 0.00 0.00 0.00 4.26
2936 3509 4.085357 TCAATCCATATTACTTGCCGCT 57.915 40.909 0.00 0.00 0.00 5.52
2939 3512 5.385198 TCCCTTCAATCCATATTACTTGCC 58.615 41.667 0.00 0.00 0.00 4.52
2940 3513 6.064717 ACTCCCTTCAATCCATATTACTTGC 58.935 40.000 0.00 0.00 0.00 4.01
2942 3515 8.331931 TGTACTCCCTTCAATCCATATTACTT 57.668 34.615 0.00 0.00 0.00 2.24
2955 3622 6.657541 GTGGAACAAATAATGTACTCCCTTCA 59.342 38.462 0.00 0.00 44.16 3.02
3033 3700 1.204146 ATGCATACGGAAGGGAGTGT 58.796 50.000 0.00 0.00 0.00 3.55
3126 3793 2.233676 TCGAGTAAATCTTGCAGGCTCA 59.766 45.455 0.00 0.00 0.00 4.26
3206 3873 2.189499 GCAGATCGGGCATGTTCCC 61.189 63.158 7.43 0.00 43.02 3.97
3277 3947 5.500234 AGCTCATGTAATGTTACACCATGT 58.500 37.500 15.94 0.00 46.80 3.21
3291 3961 6.360370 AGGTTAAGAACTGAAGCTCATGTA 57.640 37.500 0.00 0.00 0.00 2.29
3360 4030 1.394917 GGCATGACTAAACAGCTCGTG 59.605 52.381 0.00 0.00 0.00 4.35
3376 4046 3.195610 TCATGTACAGAAACTCTCGGCAT 59.804 43.478 0.33 0.00 0.00 4.40
3416 4086 5.101648 TGGATGCATAAACATCACAGAGA 57.898 39.130 0.00 0.00 46.81 3.10
3443 4114 7.992180 AACTCAACAAGAAAATAGCAAACAG 57.008 32.000 0.00 0.00 0.00 3.16
3475 4146 4.707934 TGTACATGATCTTAACCGTCAGGA 59.292 41.667 0.00 0.00 41.02 3.86
3480 4151 4.181578 GCACTGTACATGATCTTAACCGT 58.818 43.478 0.00 0.00 0.00 4.83
3485 4156 5.178061 CACCTTGCACTGTACATGATCTTA 58.822 41.667 0.00 0.00 0.00 2.10
3499 4170 0.517316 CCTTTCTACGCACCTTGCAC 59.483 55.000 0.00 0.00 45.36 4.57
3504 4175 1.003718 GGCACCTTTCTACGCACCT 60.004 57.895 0.00 0.00 0.00 4.00
3521 4192 7.118390 CACTCTAGTCTGGTTTATTTTGACAGG 59.882 40.741 0.00 0.00 0.00 4.00
3522 4193 7.657761 ACACTCTAGTCTGGTTTATTTTGACAG 59.342 37.037 0.00 0.00 0.00 3.51
3536 4207 1.598183 CCGCGCATACACTCTAGTCTG 60.598 57.143 8.75 0.00 0.00 3.51
3549 4220 0.464373 ACCTCATTTCATCCGCGCAT 60.464 50.000 8.75 0.00 0.00 4.73
3553 4224 1.401905 GGACAACCTCATTTCATCCGC 59.598 52.381 0.00 0.00 0.00 5.54
3554 4225 2.991250 AGGACAACCTCATTTCATCCG 58.009 47.619 0.00 0.00 44.13 4.18
3566 4237 3.691609 GTGGAGATGAAATGAGGACAACC 59.308 47.826 0.00 0.00 0.00 3.77
3567 4238 3.372206 CGTGGAGATGAAATGAGGACAAC 59.628 47.826 0.00 0.00 0.00 3.32
3584 4638 2.356553 GGTTGTGCGCTACGTGGA 60.357 61.111 9.73 0.00 0.00 4.02
3589 4643 2.989422 AAAATGAGGTTGTGCGCTAC 57.011 45.000 9.73 5.95 0.00 3.58
3595 4649 4.085733 TCCCCACATAAAATGAGGTTGTG 58.914 43.478 3.25 0.00 39.08 3.33
3613 4667 0.536724 GCCAACCACATTTCATCCCC 59.463 55.000 0.00 0.00 0.00 4.81
3625 4679 2.045438 CCACATAGCGGCCAACCA 60.045 61.111 2.24 0.00 34.57 3.67
3631 4685 4.813235 TTGGGCCCACATAGCGGC 62.813 66.667 28.70 0.00 44.92 6.53
3676 4730 2.239402 TGGAATGAGAGTATGCAAGGCA 59.761 45.455 0.00 0.00 44.86 4.75
3677 4731 2.615912 GTGGAATGAGAGTATGCAAGGC 59.384 50.000 0.00 0.00 0.00 4.35
3682 4736 2.224402 GGGGAGTGGAATGAGAGTATGC 60.224 54.545 0.00 0.00 0.00 3.14
3685 4739 1.651770 AGGGGGAGTGGAATGAGAGTA 59.348 52.381 0.00 0.00 0.00 2.59
3691 4745 0.621571 TGAGGAGGGGGAGTGGAATG 60.622 60.000 0.00 0.00 0.00 2.67
3693 4747 1.229529 GTGAGGAGGGGGAGTGGAA 60.230 63.158 0.00 0.00 0.00 3.53
3716 4770 1.993369 GCCTTTCCCGCTCCGAATTG 61.993 60.000 0.00 0.00 0.00 2.32
3717 4771 1.749258 GCCTTTCCCGCTCCGAATT 60.749 57.895 0.00 0.00 0.00 2.17
3718 4772 2.124695 GCCTTTCCCGCTCCGAAT 60.125 61.111 0.00 0.00 0.00 3.34
3719 4773 4.404098 GGCCTTTCCCGCTCCGAA 62.404 66.667 0.00 0.00 0.00 4.30
3721 4775 4.715523 TTGGCCTTTCCCGCTCCG 62.716 66.667 3.32 0.00 0.00 4.63
3722 4776 3.062466 GTTGGCCTTTCCCGCTCC 61.062 66.667 3.32 0.00 0.00 4.70
3723 4777 1.587043 GAAGTTGGCCTTTCCCGCTC 61.587 60.000 3.32 0.00 32.03 5.03
3724 4778 1.603739 GAAGTTGGCCTTTCCCGCT 60.604 57.895 3.32 0.00 32.03 5.52
3725 4779 1.901464 TGAAGTTGGCCTTTCCCGC 60.901 57.895 3.32 0.00 32.03 6.13
3726 4780 1.524008 GGTGAAGTTGGCCTTTCCCG 61.524 60.000 3.32 0.00 32.03 5.14
3727 4781 1.524008 CGGTGAAGTTGGCCTTTCCC 61.524 60.000 3.32 8.14 32.03 3.97
3728 4782 1.956802 CGGTGAAGTTGGCCTTTCC 59.043 57.895 3.32 0.00 32.03 3.13
3729 4783 1.285950 GCGGTGAAGTTGGCCTTTC 59.714 57.895 3.32 6.29 32.03 2.62
3730 4784 2.551912 CGCGGTGAAGTTGGCCTTT 61.552 57.895 3.32 0.00 32.03 3.11
3741 4795 3.673956 ATTTGGGATCGCGCGGTGA 62.674 57.895 31.69 11.79 0.00 4.02
3809 4863 2.200370 AGGACAGACCCGGACACA 59.800 61.111 0.73 0.00 40.05 3.72
3876 4936 1.752694 GCATTTTAGGCCCTGGCGA 60.753 57.895 0.00 0.00 43.06 5.54
4041 5103 3.066291 TGGCAACCGATAGATGTGTTT 57.934 42.857 0.00 0.00 39.76 2.83
4044 5106 4.996758 TCATAATGGCAACCGATAGATGTG 59.003 41.667 0.00 0.00 39.76 3.21
4062 5124 1.552792 TGAGCACGTGTGGGATCATAA 59.447 47.619 18.38 0.00 0.00 1.90
4257 5320 3.198409 TGACTGCTTGTGTGATCTTGT 57.802 42.857 0.00 0.00 0.00 3.16
4260 5323 3.332919 GTGATGACTGCTTGTGTGATCT 58.667 45.455 0.00 0.00 31.11 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.