Multiple sequence alignment - TraesCS4B01G208200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G208200 chr4B 100.000 6908 0 0 1 6908 445279133 445272226 0.000000e+00 12757.0
1 TraesCS4B01G208200 chr4B 83.030 165 11 4 6109 6256 126337882 126337718 4.350000e-27 134.0
2 TraesCS4B01G208200 chr4D 97.405 4046 91 9 2067 6106 360496227 360492190 0.000000e+00 6878.0
3 TraesCS4B01G208200 chr4D 86.930 1997 135 61 159 2072 360498228 360496275 0.000000e+00 2126.0
4 TraesCS4B01G208200 chr4D 86.293 642 62 15 6105 6725 182415707 182415071 0.000000e+00 675.0
5 TraesCS4B01G208200 chr4D 85.039 635 73 13 6110 6725 392800666 392800035 1.640000e-175 627.0
6 TraesCS4B01G208200 chr4D 91.241 137 11 1 6770 6906 360473613 360473478 1.180000e-42 185.0
7 TraesCS4B01G208200 chr4D 85.039 127 18 1 1 127 360498423 360498298 2.020000e-25 128.0
8 TraesCS4B01G208200 chr4A 96.395 4050 96 20 2067 6103 104376743 104380755 0.000000e+00 6625.0
9 TraesCS4B01G208200 chr4A 85.294 2040 155 55 126 2064 104374687 104376682 0.000000e+00 1971.0
10 TraesCS4B01G208200 chr4A 86.929 635 64 11 6109 6725 322678976 322679609 0.000000e+00 695.0
11 TraesCS4B01G208200 chr4A 86.520 638 59 11 6109 6726 322735347 322735977 0.000000e+00 676.0
12 TraesCS4B01G208200 chr4A 85.792 183 15 6 6726 6908 104385550 104385721 4.260000e-42 183.0
13 TraesCS4B01G208200 chr2B 89.875 642 44 8 6103 6725 209014569 209015208 0.000000e+00 806.0
14 TraesCS4B01G208200 chr2B 88.486 634 53 6 6111 6725 208936855 208937487 0.000000e+00 749.0
15 TraesCS4B01G208200 chr1B 88.976 635 51 5 6108 6725 553819331 553819963 0.000000e+00 767.0
16 TraesCS4B01G208200 chr1B 85.377 636 72 13 6109 6725 476109963 476110596 2.100000e-179 640.0
17 TraesCS4B01G208200 chr5D 88.263 639 53 10 6105 6725 38951359 38951993 0.000000e+00 745.0
18 TraesCS4B01G208200 chr5D 91.193 545 43 5 6183 6725 38932665 38933206 0.000000e+00 736.0
19 TraesCS4B01G208200 chr1D 85.781 640 70 9 6105 6725 274668744 274668107 0.000000e+00 658.0
20 TraesCS4B01G208200 chr1D 85.381 643 67 18 6105 6725 181361611 181360974 5.840000e-180 641.0
21 TraesCS4B01G208200 chr1D 86.364 110 15 0 6770 6879 454657096 454656987 3.380000e-23 121.0
22 TraesCS4B01G208200 chr5B 85.491 641 67 10 6105 6724 28279494 28278859 0.000000e+00 645.0
23 TraesCS4B01G208200 chr5B 83.438 634 58 8 6110 6725 620239565 620240169 4.710000e-151 545.0
24 TraesCS4B01G208200 chr5B 100.000 28 0 0 572 599 605317779 605317752 1.300000e-02 52.8
25 TraesCS4B01G208200 chr6D 83.465 635 82 17 6111 6725 404658324 404657693 2.800000e-158 569.0
26 TraesCS4B01G208200 chr6D 82.796 93 16 0 6788 6880 81745291 81745199 4.440000e-12 84.2
27 TraesCS4B01G208200 chr6D 94.444 36 2 0 6730 6765 81745831 81745796 1.000000e-03 56.5
28 TraesCS4B01G208200 chr7D 90.909 55 3 2 584 637 11363205 11363152 9.610000e-09 73.1
29 TraesCS4B01G208200 chr7D 92.000 50 4 0 6771 6820 517351022 517351071 3.460000e-08 71.3
30 TraesCS4B01G208200 chr3B 100.000 28 0 0 581 608 167643164 167643191 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G208200 chr4B 445272226 445279133 6907 True 12757 12757 100.000000 1 6908 1 chr4B.!!$R2 6907
1 TraesCS4B01G208200 chr4D 360492190 360498423 6233 True 3044 6878 89.791333 1 6106 3 chr4D.!!$R4 6105
2 TraesCS4B01G208200 chr4D 182415071 182415707 636 True 675 675 86.293000 6105 6725 1 chr4D.!!$R1 620
3 TraesCS4B01G208200 chr4D 392800035 392800666 631 True 627 627 85.039000 6110 6725 1 chr4D.!!$R3 615
4 TraesCS4B01G208200 chr4A 104374687 104380755 6068 False 4298 6625 90.844500 126 6103 2 chr4A.!!$F4 5977
5 TraesCS4B01G208200 chr4A 322678976 322679609 633 False 695 695 86.929000 6109 6725 1 chr4A.!!$F2 616
6 TraesCS4B01G208200 chr4A 322735347 322735977 630 False 676 676 86.520000 6109 6726 1 chr4A.!!$F3 617
7 TraesCS4B01G208200 chr2B 209014569 209015208 639 False 806 806 89.875000 6103 6725 1 chr2B.!!$F2 622
8 TraesCS4B01G208200 chr2B 208936855 208937487 632 False 749 749 88.486000 6111 6725 1 chr2B.!!$F1 614
9 TraesCS4B01G208200 chr1B 553819331 553819963 632 False 767 767 88.976000 6108 6725 1 chr1B.!!$F2 617
10 TraesCS4B01G208200 chr1B 476109963 476110596 633 False 640 640 85.377000 6109 6725 1 chr1B.!!$F1 616
11 TraesCS4B01G208200 chr5D 38951359 38951993 634 False 745 745 88.263000 6105 6725 1 chr5D.!!$F2 620
12 TraesCS4B01G208200 chr5D 38932665 38933206 541 False 736 736 91.193000 6183 6725 1 chr5D.!!$F1 542
13 TraesCS4B01G208200 chr1D 274668107 274668744 637 True 658 658 85.781000 6105 6725 1 chr1D.!!$R2 620
14 TraesCS4B01G208200 chr1D 181360974 181361611 637 True 641 641 85.381000 6105 6725 1 chr1D.!!$R1 620
15 TraesCS4B01G208200 chr5B 28278859 28279494 635 True 645 645 85.491000 6105 6724 1 chr5B.!!$R1 619
16 TraesCS4B01G208200 chr5B 620239565 620240169 604 False 545 545 83.438000 6110 6725 1 chr5B.!!$F1 615
17 TraesCS4B01G208200 chr6D 404657693 404658324 631 True 569 569 83.465000 6111 6725 1 chr6D.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 261 0.031314 CTCTATCCAGTGTGCGCGAT 59.969 55.000 12.1 0.04 0.00 4.58 F
456 503 0.108281 TGGTTTGTCGTCCGTTGTCA 60.108 50.000 0.0 0.00 0.00 3.58 F
813 883 0.764271 TGGGACACTGTGCTGAATGA 59.236 50.000 7.9 0.00 0.00 2.57 F
1025 1123 0.946221 CGCCAATACCTCATCTCCGC 60.946 60.000 0.0 0.00 0.00 5.54 F
1234 1365 1.194781 TCAAGAAGGAAGGCGAGGCT 61.195 55.000 0.0 0.00 0.00 4.58 F
1995 2134 1.837439 CCAACAGCTCAGGGTATGGTA 59.163 52.381 0.0 0.00 0.00 3.25 F
2997 3195 2.497138 TGTTCGGTCTACTCACTTCGA 58.503 47.619 0.0 0.00 0.00 3.71 F
3360 3558 2.505407 TGGGTCACCATCTGTATTCCTG 59.495 50.000 0.0 0.00 43.37 3.86 F
4274 4477 0.036858 GCCCGAGTCTGAAGCTTTCT 60.037 55.000 0.0 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1234 1365 1.103398 TCGCGAGCATGAGGATCTCA 61.103 55.000 3.71 0.00 44.99 3.27 R
1503 1636 2.093500 CACATCTTGATCGTTCCCCAGA 60.093 50.000 0.00 0.00 0.00 3.86 R
2695 2892 0.819259 AAGCACGGCGGCATCATAAT 60.819 50.000 19.61 0.00 35.83 1.28 R
2941 3139 0.609131 CCTCATCCCCCAACACACAC 60.609 60.000 0.00 0.00 0.00 3.82 R
2945 3143 2.043953 GCCCTCATCCCCCAACAC 60.044 66.667 0.00 0.00 0.00 3.32 R
3360 3558 2.281830 AGCCTGTACAGCTGAGTCC 58.718 57.895 23.35 5.24 39.69 3.85 R
4254 4454 0.320771 GAAAGCTTCAGACTCGGGCA 60.321 55.000 0.00 0.00 0.00 5.36 R
4810 5016 3.826157 CCAAGGACCATTTACAAGCTTCA 59.174 43.478 0.00 0.00 0.00 3.02 R
5967 6181 0.093026 GTTGCGAGATACACGTGCAC 59.907 55.000 17.22 6.82 34.44 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.300465 CGTCGATGCATGAGGAGGG 60.300 63.158 2.46 0.00 0.00 4.30
37 38 1.938585 TGAGGAGGGTGAGGTTGTAG 58.061 55.000 0.00 0.00 0.00 2.74
39 40 0.178903 AGGAGGGTGAGGTTGTAGCA 60.179 55.000 0.00 0.00 0.00 3.49
42 43 4.716003 GGTGAGGTTGTAGCACCC 57.284 61.111 0.00 0.00 44.86 4.61
49 50 1.198759 GGTTGTAGCACCCCTCCTCA 61.199 60.000 0.00 0.00 0.00 3.86
54 55 4.101448 GCACCCCTCCTCATGCGT 62.101 66.667 0.00 0.00 0.00 5.24
61 62 4.147449 TCCTCATGCGTCTGCCGG 62.147 66.667 0.00 0.00 41.78 6.13
64 65 2.434185 TCATGCGTCTGCCGGAAC 60.434 61.111 5.05 0.00 41.48 3.62
106 107 4.147449 TGCTCCTCCGCCATGACG 62.147 66.667 0.00 0.00 0.00 4.35
115 116 2.444624 CGCCATGACGGTGTCGAAG 61.445 63.158 0.00 0.00 40.72 3.79
117 118 0.108992 GCCATGACGGTGTCGAAGTA 60.109 55.000 0.00 0.00 40.11 2.24
124 158 2.092882 GGTGTCGAAGTACGCCTGC 61.093 63.158 0.00 0.00 44.94 4.85
128 162 2.885644 CGAAGTACGCCTGCGCAT 60.886 61.111 12.24 0.00 44.19 4.73
131 165 3.958147 AAGTACGCCTGCGCATGCT 62.958 57.895 30.34 20.79 44.19 3.79
157 191 0.039764 TCAGACACCTCCTCCATCGT 59.960 55.000 0.00 0.00 0.00 3.73
163 197 1.995626 CCTCCTCCATCGTGGGGTT 60.996 63.158 3.67 0.00 35.80 4.11
178 217 1.208293 GGGGTTGTCATCTCTCACCTC 59.792 57.143 0.00 0.00 0.00 3.85
184 223 2.043852 ATCTCTCACCTCCGGCGT 60.044 61.111 6.01 0.00 0.00 5.68
190 237 3.760035 CACCTCCGGCGTGCTAGT 61.760 66.667 6.01 0.00 0.00 2.57
191 238 3.760035 ACCTCCGGCGTGCTAGTG 61.760 66.667 6.01 0.00 0.00 2.74
211 258 1.884926 GCCTCTATCCAGTGTGCGC 60.885 63.158 0.00 0.00 0.00 6.09
214 261 0.031314 CTCTATCCAGTGTGCGCGAT 59.969 55.000 12.10 0.04 0.00 4.58
251 298 1.569479 GCAAGGCTGGACAACTCGAC 61.569 60.000 0.00 0.00 0.00 4.20
252 299 1.006102 AAGGCTGGACAACTCGACG 60.006 57.895 0.00 0.00 0.00 5.12
253 300 2.432628 GGCTGGACAACTCGACGG 60.433 66.667 0.00 0.00 0.00 4.79
254 301 2.432628 GCTGGACAACTCGACGGG 60.433 66.667 0.00 0.00 0.00 5.28
257 304 2.342648 GGACAACTCGACGGGCTT 59.657 61.111 0.00 0.00 0.00 4.35
258 305 2.027625 GGACAACTCGACGGGCTTG 61.028 63.158 0.00 1.45 0.00 4.01
259 306 2.665185 ACAACTCGACGGGCTTGC 60.665 61.111 0.00 0.00 0.00 4.01
261 308 3.936203 AACTCGACGGGCTTGCCA 61.936 61.111 14.04 0.00 0.00 4.92
262 309 3.883744 AACTCGACGGGCTTGCCAG 62.884 63.158 14.04 12.02 0.00 4.85
289 336 3.288308 AAGGCTCTCCACGTCGCTG 62.288 63.158 0.00 0.00 33.74 5.18
292 339 1.211969 GCTCTCCACGTCGCTGTAA 59.788 57.895 0.00 0.00 0.00 2.41
298 345 0.666274 CCACGTCGCTGTAAAGCTCA 60.666 55.000 2.78 0.00 0.00 4.26
307 354 3.273434 GCTGTAAAGCTCATGGTCATGA 58.727 45.455 12.41 12.41 44.83 3.07
319 366 0.674895 GGTCATGACAGAGGTGGTGC 60.675 60.000 26.47 2.06 0.00 5.01
322 369 0.250424 CATGACAGAGGTGGTGCACA 60.250 55.000 20.43 1.62 35.86 4.57
325 372 0.320247 GACAGAGGTGGTGCACAGAG 60.320 60.000 20.43 3.27 35.86 3.35
359 406 3.211865 CAGATGTGGTGCTATGCAGATT 58.788 45.455 0.00 0.00 40.08 2.40
387 434 4.638304 GGGCATGACCACGTATAAATAGT 58.362 43.478 14.59 0.00 42.05 2.12
393 440 3.709987 ACCACGTATAAATAGTGACGCC 58.290 45.455 0.00 0.00 38.86 5.68
395 442 3.548616 CCACGTATAAATAGTGACGCCGA 60.549 47.826 0.00 0.00 38.86 5.54
409 456 4.095590 CCGACCAGGCCAAATGTT 57.904 55.556 5.01 0.00 0.00 2.71
410 457 1.586028 CCGACCAGGCCAAATGTTG 59.414 57.895 5.01 0.00 0.00 3.33
426 473 6.222389 CAAATGTTGGGTTGTGTCAATATGT 58.778 36.000 0.00 0.00 0.00 2.29
438 485 3.679502 TGTCAATATGTGCGTCAGAGTTG 59.320 43.478 0.00 0.00 0.00 3.16
447 494 1.567504 CGTCAGAGTTGGTTTGTCGT 58.432 50.000 0.00 0.00 0.00 4.34
451 498 0.462789 AGAGTTGGTTTGTCGTCCGT 59.537 50.000 0.00 0.00 0.00 4.69
452 499 1.134610 AGAGTTGGTTTGTCGTCCGTT 60.135 47.619 0.00 0.00 0.00 4.44
453 500 1.004292 GAGTTGGTTTGTCGTCCGTTG 60.004 52.381 0.00 0.00 0.00 4.10
455 502 1.008329 TTGGTTTGTCGTCCGTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
456 503 0.108281 TGGTTTGTCGTCCGTTGTCA 60.108 50.000 0.00 0.00 0.00 3.58
457 504 1.008329 GGTTTGTCGTCCGTTGTCAA 58.992 50.000 0.00 0.00 0.00 3.18
458 505 1.397692 GGTTTGTCGTCCGTTGTCAAA 59.602 47.619 0.00 0.00 0.00 2.69
459 506 2.433808 GTTTGTCGTCCGTTGTCAAAC 58.566 47.619 0.00 0.00 40.16 2.93
475 523 1.997606 CAAACGGACGATAGGACAACC 59.002 52.381 0.00 0.00 43.77 3.77
481 529 1.332997 GACGATAGGACAACCGACGAT 59.667 52.381 0.00 0.00 41.83 3.73
482 530 2.545526 GACGATAGGACAACCGACGATA 59.454 50.000 0.00 0.00 41.83 2.92
513 562 7.970061 CCCAATTTCAATGTGTAGATAGTTGTG 59.030 37.037 0.00 0.00 0.00 3.33
516 565 4.180817 TCAATGTGTAGATAGTTGTGCCG 58.819 43.478 0.00 0.00 0.00 5.69
526 575 6.216801 AGATAGTTGTGCCGTCTTGTATAA 57.783 37.500 0.00 0.00 0.00 0.98
542 591 6.377429 TCTTGTATAATCCAGACACGTCTCTT 59.623 38.462 0.00 0.00 37.98 2.85
550 599 3.185188 CCAGACACGTCTCTTTGACATTG 59.815 47.826 0.00 0.00 45.60 2.82
557 606 5.050159 CACGTCTCTTTGACATTGAACATGA 60.050 40.000 0.00 0.00 45.60 3.07
567 616 5.188359 TGACATTGAACATGAGAGGAGATCA 59.812 40.000 0.00 0.00 0.00 2.92
573 622 2.048601 CATGAGAGGAGATCAGGGCTT 58.951 52.381 0.00 0.00 0.00 4.35
601 650 3.056313 GCCACTTCAATGCCGGCTC 62.056 63.158 29.70 0.00 39.73 4.70
662 711 1.134670 ACCCAAAGAGTAGAGATGCGC 60.135 52.381 0.00 0.00 0.00 6.09
665 714 2.159184 CCAAAGAGTAGAGATGCGCTCA 60.159 50.000 9.73 0.00 46.45 4.26
679 728 3.068691 CTCACGCGGGAGAGGGAA 61.069 66.667 34.54 0.00 42.93 3.97
710 759 4.199310 GAGATGATTTTGAATGGGACCGA 58.801 43.478 0.00 0.00 0.00 4.69
712 761 3.712016 TGATTTTGAATGGGACCGAGA 57.288 42.857 0.00 0.00 0.00 4.04
766 815 4.461992 CTTGCAAAGCTTCCACATTTTG 57.538 40.909 0.00 0.00 36.98 2.44
767 816 3.815856 TGCAAAGCTTCCACATTTTGA 57.184 38.095 0.00 0.00 33.50 2.69
768 817 4.134379 TGCAAAGCTTCCACATTTTGAA 57.866 36.364 0.00 0.00 33.50 2.69
770 819 4.512198 TGCAAAGCTTCCACATTTTGAATG 59.488 37.500 0.00 0.00 33.50 2.67
771 820 4.083696 GCAAAGCTTCCACATTTTGAATGG 60.084 41.667 0.00 0.00 33.50 3.16
772 821 5.299148 CAAAGCTTCCACATTTTGAATGGA 58.701 37.500 0.00 0.00 40.83 3.41
773 822 5.750352 AAGCTTCCACATTTTGAATGGAT 57.250 34.783 0.00 0.00 42.09 3.41
774 823 5.750352 AGCTTCCACATTTTGAATGGATT 57.250 34.783 5.73 0.00 42.09 3.01
776 825 7.243604 AGCTTCCACATTTTGAATGGATTTA 57.756 32.000 5.73 0.00 42.09 1.40
777 826 7.678837 AGCTTCCACATTTTGAATGGATTTAA 58.321 30.769 5.73 0.00 42.09 1.52
778 827 7.603784 AGCTTCCACATTTTGAATGGATTTAAC 59.396 33.333 5.73 0.00 42.09 2.01
779 828 7.411804 GCTTCCACATTTTGAATGGATTTAACG 60.412 37.037 5.73 0.00 42.09 3.18
780 829 6.987386 TCCACATTTTGAATGGATTTAACGT 58.013 32.000 5.73 0.00 37.60 3.99
782 831 6.400940 CCACATTTTGAATGGATTTAACGTGC 60.401 38.462 5.73 0.00 35.33 5.34
813 883 0.764271 TGGGACACTGTGCTGAATGA 59.236 50.000 7.90 0.00 0.00 2.57
830 900 1.745232 TGACAAAGTGGACGTTTGCT 58.255 45.000 0.00 0.00 38.27 3.91
843 913 1.269726 CGTTTGCTGGCAATTTGAGGT 60.270 47.619 8.86 0.00 35.70 3.85
979 1069 0.952010 GCTAGTTTGGGTTCCGCGAA 60.952 55.000 8.23 0.00 0.00 4.70
1025 1123 0.946221 CGCCAATACCTCATCTCCGC 60.946 60.000 0.00 0.00 0.00 5.54
1037 1154 3.790437 CTCCGCCCCACTGCTCAT 61.790 66.667 0.00 0.00 0.00 2.90
1234 1365 1.194781 TCAAGAAGGAAGGCGAGGCT 61.195 55.000 0.00 0.00 0.00 4.58
1503 1636 5.584551 ACTTTAGAACTCCAGATTGGGTT 57.415 39.130 0.00 0.00 38.32 4.11
1575 1709 3.006859 TGACCTCGCTGTATTATGATGGG 59.993 47.826 0.00 0.00 0.00 4.00
1576 1710 2.972713 ACCTCGCTGTATTATGATGGGT 59.027 45.455 0.00 0.00 0.00 4.51
1721 1856 3.611766 ACAGCTAACGTCTTTGCCTAT 57.388 42.857 0.00 0.00 0.00 2.57
1749 1884 6.208599 GGTATTCTGGAACTGGACAAATCAAA 59.791 38.462 0.00 0.00 0.00 2.69
1810 1945 9.121658 CTTGGTTTCTTTATAATACTCCCCTTC 57.878 37.037 0.00 0.00 0.00 3.46
1907 2045 3.496130 GCCGTAGAGAAACATGATGATGG 59.504 47.826 0.00 0.00 33.39 3.51
1920 2058 4.976224 TGATGATGGAATGCAGAGTTTG 57.024 40.909 0.00 0.00 0.00 2.93
1995 2134 1.837439 CCAACAGCTCAGGGTATGGTA 59.163 52.381 0.00 0.00 0.00 3.25
2080 2277 7.235804 AGATGCTTGGTTAAACTTAGGGTTAA 58.764 34.615 0.00 0.00 37.12 2.01
2218 2415 7.220030 GCAAGGAAGAATATGAGGAACTGATA 58.780 38.462 0.00 0.00 41.55 2.15
2221 2418 9.620259 AAGGAAGAATATGAGGAACTGATAAAC 57.380 33.333 0.00 0.00 38.18 2.01
2361 2558 7.775120 ACAAATCAGGCTACAAATGAAATAGG 58.225 34.615 0.00 0.00 0.00 2.57
2465 2662 9.462606 TGAGACTTCTAGTACAAATGAGACATA 57.537 33.333 0.00 0.00 0.00 2.29
2500 2697 4.074970 CTGCAAGAAGTTTGGACCATAGT 58.925 43.478 0.00 0.00 34.07 2.12
2644 2841 7.989947 AGTTGATGGATTAGGAAAGGTAGTA 57.010 36.000 0.00 0.00 0.00 1.82
2689 2886 8.430828 GGTAATACACACGTTTCTAAACTTCTC 58.569 37.037 4.24 0.00 36.77 2.87
2695 2892 6.921857 CACACGTTTCTAAACTTCTCTCCTAA 59.078 38.462 4.24 0.00 36.77 2.69
2747 2945 5.163622 TGTGGTTTTCTTTCTTCAGCTTCTG 60.164 40.000 0.00 0.00 0.00 3.02
2875 3073 5.649831 AGAATTTGATGTGGTAAGGCTTCTC 59.350 40.000 1.30 0.00 0.00 2.87
2941 3139 4.898829 TGGTGTTTTGTGTTCATCTGAG 57.101 40.909 0.00 0.00 0.00 3.35
2945 3143 5.030295 GTGTTTTGTGTTCATCTGAGTGTG 58.970 41.667 0.00 0.00 0.00 3.82
2973 3171 3.434596 GGGGATGAGGGCGTTTACTTATT 60.435 47.826 0.00 0.00 0.00 1.40
2982 3180 6.778108 AGGGCGTTTACTTATTTTATGTTCG 58.222 36.000 0.00 0.00 0.00 3.95
2996 3194 2.983402 TGTTCGGTCTACTCACTTCG 57.017 50.000 0.00 0.00 0.00 3.79
2997 3195 2.497138 TGTTCGGTCTACTCACTTCGA 58.503 47.619 0.00 0.00 0.00 3.71
3134 3332 8.586570 TGGAATTTGTATGTTGTAAAGCTTTG 57.413 30.769 22.02 0.00 0.00 2.77
3187 3385 9.675464 CCCAAAGTACTAATGTAAATAGGACAA 57.325 33.333 0.00 0.00 36.79 3.18
3267 3465 9.853555 TGTTATTTAAGATGATTTTCGCATTGT 57.146 25.926 0.00 0.00 0.00 2.71
3360 3558 2.505407 TGGGTCACCATCTGTATTCCTG 59.495 50.000 0.00 0.00 43.37 3.86
3473 3671 6.612643 TTTGCTACTCCAAGTATGGGCAATG 61.613 44.000 10.94 0.00 44.35 2.82
3685 3883 7.229306 TCACTCTGAACTTTTGTTATGCTGAAT 59.771 33.333 0.00 0.00 43.66 2.57
3687 3885 6.602179 TCTGAACTTTTGTTATGCTGAATCG 58.398 36.000 0.00 0.00 43.66 3.34
4005 4204 6.028368 TCGAGTATTCACGTGAGATTCTTTC 58.972 40.000 19.11 10.11 0.00 2.62
4181 4380 4.460382 GGCTGTGATTCTTTCCATCTTCAA 59.540 41.667 0.00 0.00 0.00 2.69
4254 4454 8.001292 CCCTCTATAACTTTCCTCAAATTCCAT 58.999 37.037 0.00 0.00 0.00 3.41
4258 4458 2.833943 ACTTTCCTCAAATTCCATGCCC 59.166 45.455 0.00 0.00 0.00 5.36
4273 4476 0.320771 TGCCCGAGTCTGAAGCTTTC 60.321 55.000 0.00 0.00 0.00 2.62
4274 4477 0.036858 GCCCGAGTCTGAAGCTTTCT 60.037 55.000 0.00 0.00 0.00 2.52
4275 4478 1.609320 GCCCGAGTCTGAAGCTTTCTT 60.609 52.381 0.00 0.00 34.68 2.52
4591 4794 7.709947 CATATGTGATTATGCAAAACTGGTCT 58.290 34.615 0.00 0.00 0.00 3.85
4810 5016 4.531732 TCCCCATTTTGCTTGATAAAAGCT 59.468 37.500 11.05 0.00 43.38 3.74
4904 5110 6.073873 GCTTAGCATTTATTTGTTGTGTGCAA 60.074 34.615 0.00 0.00 33.80 4.08
5189 5395 1.593196 TGCGCTGCTGGGTAAATATC 58.407 50.000 9.73 0.00 0.00 1.63
5206 5412 9.274065 GGTAAATATCGATTGTTTGTGACTTTC 57.726 33.333 1.71 0.00 0.00 2.62
5263 5469 5.125367 ACCCCATGAACTTCTATTTACCC 57.875 43.478 0.00 0.00 0.00 3.69
5673 5879 2.093235 GGTGACAGATAAGCCAGCTTCT 60.093 50.000 8.43 0.00 37.47 2.85
5685 5891 2.975732 CAGCTTCTGATACTGGAGCA 57.024 50.000 10.56 0.00 32.44 4.26
5831 6044 7.303634 TCACTAGTTGTTTCTTTCTTGTGAC 57.696 36.000 0.00 0.00 37.59 3.67
5840 6053 4.437682 TCTTTCTTGTGACCCAACAGAT 57.562 40.909 0.00 0.00 0.00 2.90
5929 6143 4.219264 TGTATGATGTGCCAGTTGATGA 57.781 40.909 0.00 0.00 0.00 2.92
5967 6181 7.549134 TGACAGGTGCATTAAGTACTAAATCAG 59.451 37.037 0.00 0.00 32.88 2.90
5995 6209 4.238514 GTGTATCTCGCAACTCTTTGACT 58.761 43.478 0.00 0.00 34.24 3.41
6000 6214 0.716108 CGCAACTCTTTGACTAGCGG 59.284 55.000 0.00 0.00 40.00 5.52
6041 6255 2.045536 CAGGAGAGCCAACCCTGC 60.046 66.667 0.00 0.00 40.69 4.85
6067 6281 0.970937 CCTCTGCCGGTGACCTCTTA 60.971 60.000 1.90 0.00 0.00 2.10
6079 6293 1.139095 CCTCTTAGTCGTCGGTGGC 59.861 63.158 0.00 0.00 0.00 5.01
6232 6467 3.201045 AGAAGGGATTAGGAGCTGAAACC 59.799 47.826 0.00 0.00 0.00 3.27
6235 6470 2.293170 GGATTAGGAGCTGAAACCTGC 58.707 52.381 0.00 0.00 37.68 4.85
6298 6533 3.328931 TCTCAGCTCAAAAAGATCAGGGT 59.671 43.478 0.00 0.00 0.00 4.34
6414 6650 9.932207 TTTGCATAGAAATTTGAGACATGATTT 57.068 25.926 0.00 0.00 0.00 2.17
6540 6781 7.301868 ACTTTGCCTTTGAGAAAATATTCCA 57.698 32.000 0.00 0.00 36.12 3.53
6726 6970 1.111277 AAAAACCAGGGTGTCACAGC 58.889 50.000 5.12 0.00 0.00 4.40
6744 6988 4.363990 CGGGGCGCGATGCTAGAT 62.364 66.667 20.10 0.00 45.43 1.98
6745 6989 2.740055 GGGGCGCGATGCTAGATG 60.740 66.667 12.10 0.00 45.43 2.90
6746 6990 2.029666 GGGCGCGATGCTAGATGT 59.970 61.111 12.10 0.00 45.43 3.06
6747 6991 2.024319 GGGCGCGATGCTAGATGTC 61.024 63.158 12.10 0.00 45.43 3.06
6748 6992 2.368105 GGCGCGATGCTAGATGTCG 61.368 63.158 12.10 0.41 45.43 4.35
6753 6997 1.970447 CGATGCTAGATGTCGCTACC 58.030 55.000 0.00 0.00 0.00 3.18
6754 6998 1.266989 CGATGCTAGATGTCGCTACCA 59.733 52.381 0.00 0.00 0.00 3.25
6755 6999 2.095008 CGATGCTAGATGTCGCTACCAT 60.095 50.000 0.00 0.00 0.00 3.55
6756 7000 2.800881 TGCTAGATGTCGCTACCATG 57.199 50.000 0.00 0.00 0.00 3.66
6757 7001 2.306847 TGCTAGATGTCGCTACCATGA 58.693 47.619 0.00 0.00 0.00 3.07
6758 7002 2.034685 TGCTAGATGTCGCTACCATGAC 59.965 50.000 0.00 0.00 35.67 3.06
6759 7003 2.918549 GCTAGATGTCGCTACCATGACG 60.919 54.545 0.00 0.00 37.94 4.35
6760 7004 0.249073 AGATGTCGCTACCATGACGC 60.249 55.000 0.00 0.00 37.94 5.19
6761 7005 1.215655 GATGTCGCTACCATGACGCC 61.216 60.000 0.00 0.00 37.94 5.68
6762 7006 2.585247 GTCGCTACCATGACGCCC 60.585 66.667 0.00 0.00 0.00 6.13
6763 7007 2.758327 TCGCTACCATGACGCCCT 60.758 61.111 0.00 0.00 0.00 5.19
6764 7008 1.454295 TCGCTACCATGACGCCCTA 60.454 57.895 0.00 0.00 0.00 3.53
6765 7009 0.826256 TCGCTACCATGACGCCCTAT 60.826 55.000 0.00 0.00 0.00 2.57
6766 7010 0.667487 CGCTACCATGACGCCCTATG 60.667 60.000 0.00 0.00 0.00 2.23
6767 7011 0.951040 GCTACCATGACGCCCTATGC 60.951 60.000 0.00 0.00 0.00 3.14
6768 7012 0.681733 CTACCATGACGCCCTATGCT 59.318 55.000 0.00 0.00 38.05 3.79
6769 7013 0.679505 TACCATGACGCCCTATGCTC 59.320 55.000 0.00 0.00 38.05 4.26
6770 7014 1.665916 CCATGACGCCCTATGCTCG 60.666 63.158 0.00 0.00 38.05 5.03
6771 7015 2.029666 ATGACGCCCTATGCTCGC 59.970 61.111 0.00 0.00 38.05 5.03
6772 7016 3.521529 ATGACGCCCTATGCTCGCC 62.522 63.158 0.00 0.00 38.05 5.54
6773 7017 4.971125 GACGCCCTATGCTCGCCC 62.971 72.222 0.00 0.00 38.05 6.13
6775 7019 3.303135 CGCCCTATGCTCGCCCTA 61.303 66.667 0.00 0.00 38.05 3.53
6776 7020 2.659610 GCCCTATGCTCGCCCTAG 59.340 66.667 0.00 0.00 36.87 3.02
6777 7021 2.659610 CCCTATGCTCGCCCTAGC 59.340 66.667 0.00 0.00 43.08 3.42
6778 7022 2.659610 CCTATGCTCGCCCTAGCC 59.340 66.667 0.00 0.00 42.05 3.93
6779 7023 2.659610 CTATGCTCGCCCTAGCCC 59.340 66.667 0.00 0.00 42.05 5.19
6780 7024 2.923035 TATGCTCGCCCTAGCCCC 60.923 66.667 0.00 0.00 42.05 5.80
6790 7034 4.609018 CTAGCCCCGGACGCCATG 62.609 72.222 0.73 0.00 0.00 3.66
6795 7039 3.369400 CCCGGACGCCATGCAAAA 61.369 61.111 0.73 0.00 0.00 2.44
6796 7040 2.179018 CCGGACGCCATGCAAAAG 59.821 61.111 0.00 0.00 0.00 2.27
6797 7041 2.331893 CCGGACGCCATGCAAAAGA 61.332 57.895 0.00 0.00 0.00 2.52
6798 7042 1.135315 CGGACGCCATGCAAAAGAG 59.865 57.895 0.00 0.00 0.00 2.85
6799 7043 1.508088 GGACGCCATGCAAAAGAGG 59.492 57.895 0.00 0.00 0.00 3.69
6800 7044 1.508088 GACGCCATGCAAAAGAGGG 59.492 57.895 0.00 0.00 0.00 4.30
6801 7045 1.228552 ACGCCATGCAAAAGAGGGT 60.229 52.632 0.00 0.00 0.00 4.34
6802 7046 1.244019 ACGCCATGCAAAAGAGGGTC 61.244 55.000 0.00 0.00 0.00 4.46
6803 7047 1.243342 CGCCATGCAAAAGAGGGTCA 61.243 55.000 0.00 0.00 0.00 4.02
6804 7048 1.188863 GCCATGCAAAAGAGGGTCAT 58.811 50.000 0.00 0.00 0.00 3.06
6805 7049 1.551883 GCCATGCAAAAGAGGGTCATT 59.448 47.619 0.00 0.00 0.00 2.57
6806 7050 2.027837 GCCATGCAAAAGAGGGTCATTT 60.028 45.455 0.00 0.00 0.00 2.32
6807 7051 3.557686 GCCATGCAAAAGAGGGTCATTTT 60.558 43.478 0.00 0.00 0.00 1.82
6808 7052 4.322650 GCCATGCAAAAGAGGGTCATTTTA 60.323 41.667 0.00 0.00 0.00 1.52
6809 7053 5.627503 GCCATGCAAAAGAGGGTCATTTTAT 60.628 40.000 0.00 0.00 0.00 1.40
6810 7054 5.813672 CCATGCAAAAGAGGGTCATTTTATG 59.186 40.000 0.00 0.00 0.00 1.90
6811 7055 6.351202 CCATGCAAAAGAGGGTCATTTTATGA 60.351 38.462 0.00 0.00 36.84 2.15
6812 7056 6.662865 TGCAAAAGAGGGTCATTTTATGAA 57.337 33.333 0.00 0.00 41.69 2.57
6813 7057 7.060383 TGCAAAAGAGGGTCATTTTATGAAA 57.940 32.000 0.00 0.00 41.69 2.69
6814 7058 7.678837 TGCAAAAGAGGGTCATTTTATGAAAT 58.321 30.769 0.00 0.00 41.69 2.17
6815 7059 8.811017 TGCAAAAGAGGGTCATTTTATGAAATA 58.189 29.630 0.00 0.00 41.69 1.40
6816 7060 9.822185 GCAAAAGAGGGTCATTTTATGAAATAT 57.178 29.630 0.00 0.00 41.69 1.28
6839 7083 7.733402 ATTTTCAGAATGGGTTCATTTTGTG 57.267 32.000 8.70 2.07 43.08 3.33
6840 7084 5.867903 TTCAGAATGGGTTCATTTTGTGT 57.132 34.783 8.70 0.00 43.08 3.72
6841 7085 5.867903 TCAGAATGGGTTCATTTTGTGTT 57.132 34.783 8.70 0.00 43.08 3.32
6842 7086 5.599732 TCAGAATGGGTTCATTTTGTGTTG 58.400 37.500 8.70 0.00 43.08 3.33
6843 7087 5.362143 TCAGAATGGGTTCATTTTGTGTTGA 59.638 36.000 8.70 0.00 43.08 3.18
6844 7088 6.041865 TCAGAATGGGTTCATTTTGTGTTGAT 59.958 34.615 8.70 0.00 43.08 2.57
6845 7089 6.146510 CAGAATGGGTTCATTTTGTGTTGATG 59.853 38.462 0.00 0.00 43.08 3.07
6846 7090 5.549742 ATGGGTTCATTTTGTGTTGATGT 57.450 34.783 0.00 0.00 0.00 3.06
6847 7091 5.350504 TGGGTTCATTTTGTGTTGATGTT 57.649 34.783 0.00 0.00 0.00 2.71
6848 7092 5.738909 TGGGTTCATTTTGTGTTGATGTTT 58.261 33.333 0.00 0.00 0.00 2.83
6849 7093 5.814705 TGGGTTCATTTTGTGTTGATGTTTC 59.185 36.000 0.00 0.00 0.00 2.78
6850 7094 5.814705 GGGTTCATTTTGTGTTGATGTTTCA 59.185 36.000 0.00 0.00 0.00 2.69
6851 7095 6.238076 GGGTTCATTTTGTGTTGATGTTTCAC 60.238 38.462 0.00 0.00 0.00 3.18
6852 7096 6.312426 GGTTCATTTTGTGTTGATGTTTCACA 59.688 34.615 0.00 0.00 39.76 3.58
6853 7097 7.148507 GGTTCATTTTGTGTTGATGTTTCACAA 60.149 33.333 5.97 5.97 45.90 3.33
6858 7102 4.753233 TGTGTTGATGTTTCACAAAAGGG 58.247 39.130 0.00 0.00 38.80 3.95
6859 7103 3.555547 GTGTTGATGTTTCACAAAAGGGC 59.444 43.478 0.00 0.00 33.04 5.19
6860 7104 3.450457 TGTTGATGTTTCACAAAAGGGCT 59.550 39.130 0.00 0.00 0.00 5.19
6861 7105 4.646945 TGTTGATGTTTCACAAAAGGGCTA 59.353 37.500 0.00 0.00 0.00 3.93
6862 7106 5.221224 TGTTGATGTTTCACAAAAGGGCTAG 60.221 40.000 0.00 0.00 0.00 3.42
6863 7107 4.469657 TGATGTTTCACAAAAGGGCTAGT 58.530 39.130 0.00 0.00 0.00 2.57
6864 7108 4.892934 TGATGTTTCACAAAAGGGCTAGTT 59.107 37.500 0.00 0.00 0.00 2.24
6865 7109 5.362430 TGATGTTTCACAAAAGGGCTAGTTT 59.638 36.000 0.00 0.00 0.00 2.66
6866 7110 5.669164 TGTTTCACAAAAGGGCTAGTTTT 57.331 34.783 0.00 0.00 0.00 2.43
6867 7111 5.415221 TGTTTCACAAAAGGGCTAGTTTTG 58.585 37.500 12.91 12.91 46.11 2.44
6872 7116 4.871933 CAAAAGGGCTAGTTTTGTCCAT 57.128 40.909 8.26 0.00 39.19 3.41
6873 7117 5.213891 CAAAAGGGCTAGTTTTGTCCATT 57.786 39.130 8.26 0.00 39.19 3.16
6874 7118 5.610398 CAAAAGGGCTAGTTTTGTCCATTT 58.390 37.500 8.26 0.27 39.19 2.32
6875 7119 5.468540 AAAGGGCTAGTTTTGTCCATTTC 57.531 39.130 0.00 0.00 27.77 2.17
6876 7120 3.431415 AGGGCTAGTTTTGTCCATTTCC 58.569 45.455 0.00 0.00 0.00 3.13
6877 7121 3.161866 GGGCTAGTTTTGTCCATTTCCA 58.838 45.455 0.00 0.00 0.00 3.53
6878 7122 3.056821 GGGCTAGTTTTGTCCATTTCCAC 60.057 47.826 0.00 0.00 0.00 4.02
6879 7123 3.572255 GGCTAGTTTTGTCCATTTCCACA 59.428 43.478 0.00 0.00 0.00 4.17
6880 7124 4.220602 GGCTAGTTTTGTCCATTTCCACAT 59.779 41.667 0.00 0.00 0.00 3.21
6881 7125 5.279456 GGCTAGTTTTGTCCATTTCCACATT 60.279 40.000 0.00 0.00 0.00 2.71
6882 7126 6.223120 GCTAGTTTTGTCCATTTCCACATTT 58.777 36.000 0.00 0.00 0.00 2.32
6883 7127 7.375053 GCTAGTTTTGTCCATTTCCACATTTA 58.625 34.615 0.00 0.00 0.00 1.40
6884 7128 8.034804 GCTAGTTTTGTCCATTTCCACATTTAT 58.965 33.333 0.00 0.00 0.00 1.40
6885 7129 9.927668 CTAGTTTTGTCCATTTCCACATTTATT 57.072 29.630 0.00 0.00 0.00 1.40
6886 7130 8.606040 AGTTTTGTCCATTTCCACATTTATTG 57.394 30.769 0.00 0.00 0.00 1.90
6887 7131 7.661027 AGTTTTGTCCATTTCCACATTTATTGG 59.339 33.333 0.00 0.00 35.18 3.16
6888 7132 5.674052 TGTCCATTTCCACATTTATTGGG 57.326 39.130 0.00 0.00 34.56 4.12
6889 7133 4.081198 TGTCCATTTCCACATTTATTGGGC 60.081 41.667 0.00 0.00 34.56 5.36
6890 7134 4.162131 GTCCATTTCCACATTTATTGGGCT 59.838 41.667 0.00 0.00 34.56 5.19
6891 7135 4.161942 TCCATTTCCACATTTATTGGGCTG 59.838 41.667 0.00 0.00 34.56 4.85
6892 7136 3.608316 TTTCCACATTTATTGGGCTGC 57.392 42.857 0.00 0.00 34.56 5.25
6893 7137 1.102154 TCCACATTTATTGGGCTGCG 58.898 50.000 0.00 0.00 34.56 5.18
6894 7138 0.102844 CCACATTTATTGGGCTGCGG 59.897 55.000 0.00 0.00 0.00 5.69
6895 7139 0.102844 CACATTTATTGGGCTGCGGG 59.897 55.000 0.00 0.00 0.00 6.13
6896 7140 1.067916 CATTTATTGGGCTGCGGGC 59.932 57.895 11.40 11.40 40.90 6.13
6897 7141 1.381056 ATTTATTGGGCTGCGGGCA 60.381 52.632 22.02 0.69 44.01 5.36
6898 7142 0.975040 ATTTATTGGGCTGCGGGCAA 60.975 50.000 22.02 6.79 44.01 4.52
6899 7143 1.188219 TTTATTGGGCTGCGGGCAAA 61.188 50.000 22.02 17.17 44.01 3.68
6900 7144 1.188219 TTATTGGGCTGCGGGCAAAA 61.188 50.000 22.02 14.68 44.01 2.44
6901 7145 1.882989 TATTGGGCTGCGGGCAAAAC 61.883 55.000 22.02 3.63 44.01 2.43
6902 7146 4.912395 TGGGCTGCGGGCAAAACT 62.912 61.111 22.02 0.00 44.01 2.66
6903 7147 2.675075 GGGCTGCGGGCAAAACTA 60.675 61.111 22.02 0.00 44.01 2.24
6904 7148 2.566529 GGCTGCGGGCAAAACTAC 59.433 61.111 15.36 0.00 44.01 2.73
6905 7149 2.265182 GGCTGCGGGCAAAACTACA 61.265 57.895 15.36 0.00 44.01 2.74
6906 7150 1.595093 GGCTGCGGGCAAAACTACAT 61.595 55.000 15.36 0.00 44.01 2.29
6907 7151 0.456653 GCTGCGGGCAAAACTACATG 60.457 55.000 0.00 0.00 41.35 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.300465 CCTCCTCATGCATCGACGG 60.300 63.158 0.00 2.88 0.00 4.79
17 18 2.472029 CTACAACCTCACCCTCCTCAT 58.528 52.381 0.00 0.00 0.00 2.90
26 27 0.036294 GAGGGGTGCTACAACCTCAC 60.036 60.000 16.73 0.22 43.88 3.51
37 38 4.101448 ACGCATGAGGAGGGGTGC 62.101 66.667 0.00 0.00 0.00 5.01
39 40 2.039624 AGACGCATGAGGAGGGGT 59.960 61.111 0.00 0.00 0.00 4.95
41 42 2.202987 GCAGACGCATGAGGAGGG 60.203 66.667 0.00 0.00 38.36 4.30
42 43 2.202987 GGCAGACGCATGAGGAGG 60.203 66.667 0.00 0.00 41.24 4.30
111 112 2.885644 ATGCGCAGGCGTACTTCG 60.886 61.111 18.32 0.00 44.10 3.79
115 116 2.584970 TAGCATGCGCAGGCGTAC 60.585 61.111 37.24 15.07 43.74 3.67
131 165 0.339859 AGGAGGTGTCTGATGCCCTA 59.660 55.000 0.00 0.00 0.00 3.53
136 170 1.068281 CGATGGAGGAGGTGTCTGATG 59.932 57.143 0.00 0.00 0.00 3.07
137 171 1.342474 ACGATGGAGGAGGTGTCTGAT 60.342 52.381 0.00 0.00 0.00 2.90
157 191 0.984230 GGTGAGAGATGACAACCCCA 59.016 55.000 0.00 0.00 0.00 4.96
187 234 3.291584 CACACTGGATAGAGGCTCACTA 58.708 50.000 18.26 1.13 0.00 2.74
190 237 0.826715 GCACACTGGATAGAGGCTCA 59.173 55.000 18.26 3.05 0.00 4.26
191 238 0.249238 CGCACACTGGATAGAGGCTC 60.249 60.000 6.34 6.34 0.00 4.70
211 258 3.506096 CAGCTGGCAGGCACATCG 61.506 66.667 17.64 0.00 34.17 3.84
214 261 4.648626 GTCCAGCTGGCAGGCACA 62.649 66.667 28.91 5.83 34.44 4.57
263 310 2.125350 GGAGAGCCTTGCGTCCAG 60.125 66.667 5.85 0.00 36.82 3.86
264 311 2.922503 TGGAGAGCCTTGCGTCCA 60.923 61.111 8.57 8.57 41.75 4.02
266 313 2.811317 CGTGGAGAGCCTTGCGTC 60.811 66.667 0.00 0.00 34.31 5.19
267 314 3.575351 GACGTGGAGAGCCTTGCGT 62.575 63.158 0.00 0.00 39.18 5.24
268 315 2.811317 GACGTGGAGAGCCTTGCG 60.811 66.667 0.00 0.00 34.31 4.85
269 316 2.811317 CGACGTGGAGAGCCTTGC 60.811 66.667 0.00 0.00 34.31 4.01
270 317 2.811317 GCGACGTGGAGAGCCTTG 60.811 66.667 0.11 0.00 34.31 3.61
298 345 1.280133 CACCACCTCTGTCATGACCAT 59.720 52.381 22.85 1.22 0.00 3.55
307 354 1.750930 CTCTGTGCACCACCTCTGT 59.249 57.895 15.69 0.00 32.73 3.41
319 366 4.645535 TCTGTTTCATTTCCTCCTCTGTG 58.354 43.478 0.00 0.00 0.00 3.66
322 369 5.251764 CACATCTGTTTCATTTCCTCCTCT 58.748 41.667 0.00 0.00 0.00 3.69
325 372 4.082125 ACCACATCTGTTTCATTTCCTCC 58.918 43.478 0.00 0.00 0.00 4.30
365 412 4.451096 CACTATTTATACGTGGTCATGCCC 59.549 45.833 0.00 0.00 36.04 5.36
393 440 1.586028 CCAACATTTGGCCTGGTCG 59.414 57.895 3.32 0.00 45.17 4.79
405 452 4.321899 GCACATATTGACACAACCCAACAT 60.322 41.667 0.00 0.00 0.00 2.71
406 453 3.005261 GCACATATTGACACAACCCAACA 59.995 43.478 0.00 0.00 0.00 3.33
408 455 2.227626 CGCACATATTGACACAACCCAA 59.772 45.455 0.00 0.00 0.00 4.12
409 456 1.809547 CGCACATATTGACACAACCCA 59.190 47.619 0.00 0.00 0.00 4.51
410 457 1.810151 ACGCACATATTGACACAACCC 59.190 47.619 0.00 0.00 0.00 4.11
423 470 1.603802 CAAACCAACTCTGACGCACAT 59.396 47.619 0.00 0.00 0.00 3.21
424 471 1.013596 CAAACCAACTCTGACGCACA 58.986 50.000 0.00 0.00 0.00 4.57
426 473 1.295792 GACAAACCAACTCTGACGCA 58.704 50.000 0.00 0.00 0.00 5.24
438 485 1.008329 TTGACAACGGACGACAAACC 58.992 50.000 0.00 0.00 0.00 3.27
451 498 2.296752 TGTCCTATCGTCCGTTTGACAA 59.703 45.455 0.00 0.00 44.71 3.18
452 499 1.887854 TGTCCTATCGTCCGTTTGACA 59.112 47.619 0.00 0.00 44.71 3.58
453 500 2.642139 TGTCCTATCGTCCGTTTGAC 57.358 50.000 0.00 0.00 40.81 3.18
455 502 1.997606 GGTTGTCCTATCGTCCGTTTG 59.002 52.381 0.00 0.00 0.00 2.93
456 503 1.403249 CGGTTGTCCTATCGTCCGTTT 60.403 52.381 0.00 0.00 34.38 3.60
457 504 0.171903 CGGTTGTCCTATCGTCCGTT 59.828 55.000 0.00 0.00 34.38 4.44
458 505 0.677731 TCGGTTGTCCTATCGTCCGT 60.678 55.000 0.00 0.00 39.14 4.69
459 506 0.248377 GTCGGTTGTCCTATCGTCCG 60.248 60.000 0.00 0.00 39.40 4.79
460 507 0.248377 CGTCGGTTGTCCTATCGTCC 60.248 60.000 0.00 0.00 0.00 4.79
461 508 0.729116 TCGTCGGTTGTCCTATCGTC 59.271 55.000 0.00 0.00 0.00 4.20
462 509 1.386533 ATCGTCGGTTGTCCTATCGT 58.613 50.000 0.00 0.00 0.00 3.73
463 510 2.095869 CCTATCGTCGGTTGTCCTATCG 60.096 54.545 0.00 0.00 0.00 2.92
464 511 2.351544 GCCTATCGTCGGTTGTCCTATC 60.352 54.545 0.00 0.00 0.00 2.08
465 512 1.612463 GCCTATCGTCGGTTGTCCTAT 59.388 52.381 0.00 0.00 0.00 2.57
466 513 1.027357 GCCTATCGTCGGTTGTCCTA 58.973 55.000 0.00 0.00 0.00 2.94
467 514 0.968901 TGCCTATCGTCGGTTGTCCT 60.969 55.000 0.00 0.00 0.00 3.85
468 515 0.804933 GTGCCTATCGTCGGTTGTCC 60.805 60.000 0.00 0.00 0.00 4.02
475 523 1.597663 GAAATTGGGTGCCTATCGTCG 59.402 52.381 0.00 0.00 0.00 5.12
481 529 3.505386 ACACATTGAAATTGGGTGCCTA 58.495 40.909 0.00 0.00 32.89 3.93
482 530 2.328319 ACACATTGAAATTGGGTGCCT 58.672 42.857 0.00 0.00 32.89 4.75
487 535 7.970061 CACAACTATCTACACATTGAAATTGGG 59.030 37.037 0.00 0.00 0.00 4.12
490 538 7.538575 GGCACAACTATCTACACATTGAAATT 58.461 34.615 0.00 0.00 0.00 1.82
513 562 3.802685 GTGTCTGGATTATACAAGACGGC 59.197 47.826 0.00 0.00 0.00 5.68
516 565 5.892568 AGACGTGTCTGGATTATACAAGAC 58.107 41.667 0.86 0.00 38.75 3.01
526 575 3.305398 GTCAAAGAGACGTGTCTGGAT 57.695 47.619 16.86 3.07 40.61 3.41
542 591 5.488262 TCTCCTCTCATGTTCAATGTCAA 57.512 39.130 0.00 0.00 0.00 3.18
550 599 2.224257 GCCCTGATCTCCTCTCATGTTC 60.224 54.545 0.00 0.00 0.00 3.18
557 606 1.344191 GCCAAGCCCTGATCTCCTCT 61.344 60.000 0.00 0.00 0.00 3.69
601 650 0.866061 CGGACGCAATCGGTCACTAG 60.866 60.000 0.00 0.00 40.69 2.57
641 690 2.815478 CGCATCTCTACTCTTTGGGTC 58.185 52.381 0.00 0.00 0.00 4.46
644 693 2.159184 TGAGCGCATCTCTACTCTTTGG 60.159 50.000 11.47 0.00 42.38 3.28
647 696 1.064803 CGTGAGCGCATCTCTACTCTT 59.935 52.381 11.47 0.00 42.38 2.85
662 711 3.068691 TTCCCTCTCCCGCGTGAG 61.069 66.667 12.76 12.76 0.00 3.51
678 727 3.094572 CAAAATCATCTCAGGTGCCCTT 58.905 45.455 0.00 0.00 0.00 3.95
679 728 2.309755 TCAAAATCATCTCAGGTGCCCT 59.690 45.455 0.00 0.00 0.00 5.19
686 735 4.036027 CGGTCCCATTCAAAATCATCTCAG 59.964 45.833 0.00 0.00 0.00 3.35
687 736 3.947196 CGGTCCCATTCAAAATCATCTCA 59.053 43.478 0.00 0.00 0.00 3.27
759 808 5.637387 GGCACGTTAAATCCATTCAAAATGT 59.363 36.000 0.00 0.00 0.00 2.71
761 810 5.175127 GGGCACGTTAAATCCATTCAAAAT 58.825 37.500 0.00 0.00 0.00 1.82
763 812 3.366476 CGGGCACGTTAAATCCATTCAAA 60.366 43.478 0.00 0.00 34.81 2.69
766 815 1.533129 GCGGGCACGTTAAATCCATTC 60.533 52.381 11.45 0.00 43.45 2.67
767 816 0.454196 GCGGGCACGTTAAATCCATT 59.546 50.000 11.45 0.00 43.45 3.16
768 817 0.678366 TGCGGGCACGTTAAATCCAT 60.678 50.000 11.45 0.00 43.45 3.41
770 819 0.241481 TTTGCGGGCACGTTAAATCC 59.759 50.000 11.45 0.00 43.45 3.01
771 820 1.333115 GTTTGCGGGCACGTTAAATC 58.667 50.000 11.45 4.01 43.45 2.17
772 821 0.669077 TGTTTGCGGGCACGTTAAAT 59.331 45.000 11.45 0.00 43.45 1.40
773 822 0.029567 CTGTTTGCGGGCACGTTAAA 59.970 50.000 11.45 9.65 43.45 1.52
774 823 0.814410 TCTGTTTGCGGGCACGTTAA 60.814 50.000 11.45 2.61 43.45 2.01
776 825 1.896660 ATCTGTTTGCGGGCACGTT 60.897 52.632 11.45 0.00 43.45 3.99
777 826 2.281484 ATCTGTTTGCGGGCACGT 60.281 55.556 11.45 0.00 43.45 4.49
778 827 2.176546 CATCTGTTTGCGGGCACG 59.823 61.111 2.50 2.50 44.63 5.34
779 828 2.568090 CCATCTGTTTGCGGGCAC 59.432 61.111 0.00 0.00 0.00 5.01
780 829 2.676121 CCCATCTGTTTGCGGGCA 60.676 61.111 0.00 0.00 0.00 5.36
782 831 1.303236 TGTCCCATCTGTTTGCGGG 60.303 57.895 0.00 0.00 40.32 6.13
802 872 2.618241 GTCCACTTTGTCATTCAGCACA 59.382 45.455 0.00 0.00 0.00 4.57
803 873 2.349817 CGTCCACTTTGTCATTCAGCAC 60.350 50.000 0.00 0.00 0.00 4.40
805 875 1.873591 ACGTCCACTTTGTCATTCAGC 59.126 47.619 0.00 0.00 0.00 4.26
806 876 4.282068 CAAACGTCCACTTTGTCATTCAG 58.718 43.478 0.00 0.00 0.00 3.02
813 883 0.738389 CCAGCAAACGTCCACTTTGT 59.262 50.000 0.00 0.00 32.18 2.83
843 913 1.693799 AGGGAAGGGAAATAAGGGCA 58.306 50.000 0.00 0.00 0.00 5.36
910 1000 9.720769 GAGGGTTCTTTCGGAAAATATATATCA 57.279 33.333 4.53 0.00 35.51 2.15
911 1001 9.720769 TGAGGGTTCTTTCGGAAAATATATATC 57.279 33.333 4.53 0.00 35.51 1.63
912 1002 9.503399 GTGAGGGTTCTTTCGGAAAATATATAT 57.497 33.333 4.53 0.00 35.51 0.86
913 1003 8.487848 TGTGAGGGTTCTTTCGGAAAATATATA 58.512 33.333 4.53 0.00 35.51 0.86
914 1004 7.343357 TGTGAGGGTTCTTTCGGAAAATATAT 58.657 34.615 4.53 0.00 35.51 0.86
915 1005 6.713276 TGTGAGGGTTCTTTCGGAAAATATA 58.287 36.000 4.53 0.00 35.51 0.86
1025 1123 1.269988 CGAGATGTATGAGCAGTGGGG 60.270 57.143 0.00 0.00 0.00 4.96
1037 1154 1.805495 CGGGAGAGACGACGAGATGTA 60.805 57.143 0.00 0.00 0.00 2.29
1234 1365 1.103398 TCGCGAGCATGAGGATCTCA 61.103 55.000 3.71 0.00 44.99 3.27
1324 1457 6.772716 GTGCAGATTTAATCCCTAATCCAGAA 59.227 38.462 0.78 0.00 32.43 3.02
1503 1636 2.093500 CACATCTTGATCGTTCCCCAGA 60.093 50.000 0.00 0.00 0.00 3.86
1519 1653 5.633830 ACAGATCCAAACACAATCACATC 57.366 39.130 0.00 0.00 0.00 3.06
1575 1709 4.072839 AGTTTAGCTAGGCAGAAACCAAC 58.927 43.478 12.86 0.00 37.35 3.77
1576 1710 4.367039 AGTTTAGCTAGGCAGAAACCAA 57.633 40.909 12.86 0.00 37.35 3.67
1617 1751 7.173390 GTGGAGGGCTAACATAAACTATCAATC 59.827 40.741 0.00 0.00 0.00 2.67
1618 1752 6.998673 GTGGAGGGCTAACATAAACTATCAAT 59.001 38.462 0.00 0.00 0.00 2.57
1619 1753 6.354130 GTGGAGGGCTAACATAAACTATCAA 58.646 40.000 0.00 0.00 0.00 2.57
1620 1754 5.163237 GGTGGAGGGCTAACATAAACTATCA 60.163 44.000 0.00 0.00 0.00 2.15
1721 1856 2.976185 TGTCCAGTTCCAGAATACCACA 59.024 45.455 0.00 0.00 0.00 4.17
1749 1884 7.024345 TGAAGCCATACAGATATCAATCCAT 57.976 36.000 5.32 0.00 31.98 3.41
1810 1945 8.715191 TTTGAAAAACTTTGCCGTTTAAAAAG 57.285 26.923 0.00 0.00 36.16 2.27
1985 2124 3.780294 TGCTGTTTCAGATACCATACCCT 59.220 43.478 0.66 0.00 32.44 4.34
1995 2134 4.716784 TCCCACTAGTATGCTGTTTCAGAT 59.283 41.667 0.00 0.00 32.44 2.90
2080 2277 2.860009 CATGATGGTTAGCTGCAGGAT 58.140 47.619 17.12 0.00 0.00 3.24
2361 2558 8.616076 TCTTTGTTTCTTCTTTTGACAGATCTC 58.384 33.333 0.00 0.00 0.00 2.75
2465 2662 5.971763 ACTTCTTGCAGAAAGAGATACGAT 58.028 37.500 14.89 0.00 45.64 3.73
2644 2841 4.851639 ACCTTTATCATTGTCCAGAGCT 57.148 40.909 0.00 0.00 0.00 4.09
2689 2886 2.002586 CGGCGGCATCATAATTAGGAG 58.997 52.381 10.53 0.07 0.00 3.69
2695 2892 0.819259 AAGCACGGCGGCATCATAAT 60.819 50.000 19.61 0.00 35.83 1.28
2747 2945 2.358898 TGTTCCTCTTGCAAGCTTCAAC 59.641 45.455 21.99 18.83 0.00 3.18
2875 3073 4.446385 CACAGTGGCATCTTGAAAATGTTG 59.554 41.667 0.00 0.00 0.00 3.33
2941 3139 0.609131 CCTCATCCCCCAACACACAC 60.609 60.000 0.00 0.00 0.00 3.82
2945 3143 2.043953 GCCCTCATCCCCCAACAC 60.044 66.667 0.00 0.00 0.00 3.32
2973 3171 5.181811 TCGAAGTGAGTAGACCGAACATAAA 59.818 40.000 0.00 0.00 0.00 1.40
2982 3180 3.502979 AGTTGTCTCGAAGTGAGTAGACC 59.497 47.826 0.00 0.00 45.46 3.85
2996 3194 5.415221 CCAAGATTCTACCAGAGTTGTCTC 58.585 45.833 0.00 0.00 40.70 3.36
2997 3195 4.223923 CCCAAGATTCTACCAGAGTTGTCT 59.776 45.833 0.00 0.00 0.00 3.41
3070 3268 3.829728 ACCTTGGTCTACCTGAGTAGT 57.170 47.619 0.02 0.00 45.36 2.73
3128 3326 5.451798 CCAATAACAAGGTTCACACAAAGCT 60.452 40.000 0.00 0.00 38.57 3.74
3134 3332 4.819630 TCAGACCAATAACAAGGTTCACAC 59.180 41.667 0.00 0.00 38.50 3.82
3187 3385 7.886446 TCATGTATACTCAATGCAATGATCCAT 59.114 33.333 4.61 2.01 33.59 3.41
3255 3453 7.973601 AGAAGAAAAACAAACAATGCGAAAAT 58.026 26.923 0.00 0.00 0.00 1.82
3267 3465 7.973944 GCAAGAAAGTAGGAGAAGAAAAACAAA 59.026 33.333 0.00 0.00 0.00 2.83
3360 3558 2.281830 AGCCTGTACAGCTGAGTCC 58.718 57.895 23.35 5.24 39.69 3.85
3471 3669 3.706086 AGTTGGAACTTTTTGGTGAGCAT 59.294 39.130 0.00 0.00 35.21 3.79
3473 3671 3.130340 TCAGTTGGAACTTTTTGGTGAGC 59.870 43.478 0.00 0.00 37.08 4.26
3636 3834 7.592164 GTGAAATCATTCAAAATTTGCTTTGGG 59.408 33.333 0.00 0.00 46.66 4.12
3685 3883 4.339247 TGATAGCTCATCAACTGATCACGA 59.661 41.667 0.00 0.00 40.80 4.35
3687 3885 8.599055 TTTATGATAGCTCATCAACTGATCAC 57.401 34.615 9.09 0.00 46.66 3.06
3731 3929 8.898761 TGAATTGTTTGACTGTACAAGTAACAT 58.101 29.630 0.00 0.00 40.07 2.71
3732 3930 8.178964 GTGAATTGTTTGACTGTACAAGTAACA 58.821 33.333 0.00 3.01 40.07 2.41
3733 3931 8.178964 TGTGAATTGTTTGACTGTACAAGTAAC 58.821 33.333 0.00 3.90 40.07 2.50
4005 4204 6.876257 AGAGTATTTGCACAGAAAGAAGGTAG 59.124 38.462 0.00 0.00 0.00 3.18
4048 4247 3.492102 AGAAGCACTGCCAAGTAGAAA 57.508 42.857 0.00 0.00 33.79 2.52
4181 4380 2.197465 GTAACAGTCCTCCCAAGGGAT 58.803 52.381 8.58 0.00 44.24 3.85
4221 4420 6.447084 TGAGGAAAGTTATAGAGGGGTGAATT 59.553 38.462 0.00 0.00 0.00 2.17
4254 4454 0.320771 GAAAGCTTCAGACTCGGGCA 60.321 55.000 0.00 0.00 0.00 5.36
4258 4458 4.513318 AGGAAAAAGAAAGCTTCAGACTCG 59.487 41.667 0.00 0.00 31.82 4.18
4273 4476 5.743872 CCGAACAGAAAGAACAAGGAAAAAG 59.256 40.000 0.00 0.00 0.00 2.27
4274 4477 5.416326 TCCGAACAGAAAGAACAAGGAAAAA 59.584 36.000 0.00 0.00 0.00 1.94
4275 4478 4.944930 TCCGAACAGAAAGAACAAGGAAAA 59.055 37.500 0.00 0.00 0.00 2.29
4591 4794 4.380843 ACAATAACACCCAGGATTGACA 57.619 40.909 5.08 0.00 34.18 3.58
4627 4830 7.581213 TGCTTAAAAATTCTCAAGAGTTCCA 57.419 32.000 0.00 0.00 0.00 3.53
4788 4994 4.632688 CAGCTTTTATCAAGCAAAATGGGG 59.367 41.667 9.16 0.00 45.30 4.96
4810 5016 3.826157 CCAAGGACCATTTACAAGCTTCA 59.174 43.478 0.00 0.00 0.00 3.02
5189 5395 4.840772 GTGATCGAAAGTCACAAACAATCG 59.159 41.667 11.79 0.00 44.13 3.34
5206 5412 5.582269 ACATACTGAATGGAAGTTGTGATCG 59.418 40.000 0.00 0.00 40.16 3.69
5263 5469 8.012241 GCGTTCAAATATTCCAGAAAGCTATAG 58.988 37.037 19.16 0.00 40.59 1.31
5673 5879 2.352715 CGTGACAGTTGCTCCAGTATCA 60.353 50.000 0.00 0.00 0.00 2.15
5685 5891 5.201713 TCTCTTCTTCATTCGTGACAGTT 57.798 39.130 0.00 0.00 0.00 3.16
5778 5984 9.925268 TCAAGATTAACGAACAAAAGTTTAGAC 57.075 29.630 0.00 0.00 0.00 2.59
5831 6044 9.151471 CGTAGGTAATATCAATAATCTGTTGGG 57.849 37.037 0.00 0.00 0.00 4.12
5895 6108 8.839343 TGGCACATCATACATGTAGAAAAATAG 58.161 33.333 11.91 0.00 0.00 1.73
5929 6143 3.012518 GCACCTGTCACAGCTAAATCAT 58.987 45.455 0.00 0.00 0.00 2.45
5967 6181 0.093026 GTTGCGAGATACACGTGCAC 59.907 55.000 17.22 6.82 34.44 4.57
6052 6266 1.592400 CGACTAAGAGGTCACCGGCA 61.592 60.000 0.00 0.00 36.12 5.69
6079 6293 1.004918 GATCCGGCAATACCCCTCG 60.005 63.158 0.00 0.00 33.26 4.63
6232 6467 1.620822 AGCAAACCCTTAACCTGCAG 58.379 50.000 6.78 6.78 35.44 4.41
6235 6470 3.610911 CTCCTAGCAAACCCTTAACCTG 58.389 50.000 0.00 0.00 0.00 4.00
6298 6533 9.515226 AGCACTTTGTGAAGGAAGTATATTTTA 57.485 29.630 1.52 0.00 37.19 1.52
6435 6671 6.739331 TTTTCTTGCCCCTAAAATTCTGAA 57.261 33.333 0.00 0.00 0.00 3.02
6727 6971 4.363990 ATCTAGCATCGCGCCCCG 62.364 66.667 0.00 0.00 44.04 5.73
6728 6972 2.740055 CATCTAGCATCGCGCCCC 60.740 66.667 0.00 0.00 44.04 5.80
6729 6973 2.024319 GACATCTAGCATCGCGCCC 61.024 63.158 0.00 0.00 44.04 6.13
6730 6974 2.368105 CGACATCTAGCATCGCGCC 61.368 63.158 0.00 0.00 44.04 6.53
6731 6975 3.141928 CGACATCTAGCATCGCGC 58.858 61.111 0.00 0.00 42.91 6.86
6734 6978 1.266989 TGGTAGCGACATCTAGCATCG 59.733 52.381 0.00 5.93 40.76 3.84
6737 6981 2.034685 GTCATGGTAGCGACATCTAGCA 59.965 50.000 0.00 5.35 46.82 3.49
6738 6982 2.667137 GTCATGGTAGCGACATCTAGC 58.333 52.381 0.00 0.00 37.51 3.42
6739 6983 2.918549 GCGTCATGGTAGCGACATCTAG 60.919 54.545 0.00 0.00 32.24 2.43
6740 6984 1.001706 GCGTCATGGTAGCGACATCTA 60.002 52.381 0.00 0.00 32.24 1.98
6741 6985 0.249073 GCGTCATGGTAGCGACATCT 60.249 55.000 0.00 0.00 32.24 2.90
6742 6986 1.215655 GGCGTCATGGTAGCGACATC 61.216 60.000 0.00 0.00 33.26 3.06
6743 6987 1.227263 GGCGTCATGGTAGCGACAT 60.227 57.895 0.00 0.00 33.26 3.06
6744 6988 2.183300 GGCGTCATGGTAGCGACA 59.817 61.111 0.00 0.00 33.26 4.35
6745 6989 1.731433 TAGGGCGTCATGGTAGCGAC 61.731 60.000 0.00 0.00 0.00 5.19
6746 6990 0.826256 ATAGGGCGTCATGGTAGCGA 60.826 55.000 0.00 0.00 0.00 4.93
6747 6991 0.667487 CATAGGGCGTCATGGTAGCG 60.667 60.000 0.00 0.00 0.00 4.26
6748 6992 0.951040 GCATAGGGCGTCATGGTAGC 60.951 60.000 0.00 0.00 0.00 3.58
6749 6993 3.217242 GCATAGGGCGTCATGGTAG 57.783 57.895 0.00 0.00 0.00 3.18
6759 7003 2.659610 CTAGGGCGAGCATAGGGC 59.340 66.667 0.00 0.00 45.30 5.19
6760 7004 2.659610 GCTAGGGCGAGCATAGGG 59.340 66.667 5.25 0.00 42.36 3.53
6761 7005 2.659610 GGCTAGGGCGAGCATAGG 59.340 66.667 11.55 0.00 44.76 2.57
6762 7006 2.659610 GGGCTAGGGCGAGCATAG 59.340 66.667 11.55 0.13 44.76 2.23
6763 7007 2.923035 GGGGCTAGGGCGAGCATA 60.923 66.667 11.55 0.00 44.76 3.14
6773 7017 4.609018 CATGGCGTCCGGGGCTAG 62.609 72.222 16.27 5.08 0.00 3.42
6778 7022 3.340953 CTTTTGCATGGCGTCCGGG 62.341 63.158 0.00 0.00 0.00 5.73
6779 7023 2.179018 CTTTTGCATGGCGTCCGG 59.821 61.111 0.00 0.00 0.00 5.14
6780 7024 1.135315 CTCTTTTGCATGGCGTCCG 59.865 57.895 0.00 0.00 0.00 4.79
6781 7025 1.508088 CCTCTTTTGCATGGCGTCC 59.492 57.895 0.00 0.00 0.00 4.79
6782 7026 1.244019 ACCCTCTTTTGCATGGCGTC 61.244 55.000 0.00 0.00 0.00 5.19
6783 7027 1.228552 ACCCTCTTTTGCATGGCGT 60.229 52.632 0.00 0.00 0.00 5.68
6784 7028 1.243342 TGACCCTCTTTTGCATGGCG 61.243 55.000 0.00 0.00 0.00 5.69
6785 7029 1.188863 ATGACCCTCTTTTGCATGGC 58.811 50.000 0.00 0.00 0.00 4.40
6786 7030 3.967332 AAATGACCCTCTTTTGCATGG 57.033 42.857 0.00 0.00 0.00 3.66
6787 7031 6.632909 TCATAAAATGACCCTCTTTTGCATG 58.367 36.000 0.00 0.00 33.59 4.06
6788 7032 6.855763 TCATAAAATGACCCTCTTTTGCAT 57.144 33.333 0.00 0.00 33.59 3.96
6789 7033 6.662865 TTCATAAAATGACCCTCTTTTGCA 57.337 33.333 0.00 0.00 39.39 4.08
6790 7034 9.822185 ATATTTCATAAAATGACCCTCTTTTGC 57.178 29.630 0.00 0.00 39.39 3.68
6813 7057 9.439500 CACAAAATGAACCCATTCTGAAAATAT 57.561 29.630 0.00 0.00 41.84 1.28
6814 7058 8.428063 ACACAAAATGAACCCATTCTGAAAATA 58.572 29.630 0.00 0.00 41.84 1.40
6815 7059 7.281841 ACACAAAATGAACCCATTCTGAAAAT 58.718 30.769 0.00 0.00 41.84 1.82
6816 7060 6.648192 ACACAAAATGAACCCATTCTGAAAA 58.352 32.000 0.00 0.00 41.84 2.29
6817 7061 6.232581 ACACAAAATGAACCCATTCTGAAA 57.767 33.333 0.00 0.00 41.84 2.69
6818 7062 5.867903 ACACAAAATGAACCCATTCTGAA 57.132 34.783 0.00 0.00 41.84 3.02
6819 7063 5.362143 TCAACACAAAATGAACCCATTCTGA 59.638 36.000 0.00 0.00 41.84 3.27
6820 7064 5.599732 TCAACACAAAATGAACCCATTCTG 58.400 37.500 0.00 0.00 41.84 3.02
6821 7065 5.867903 TCAACACAAAATGAACCCATTCT 57.132 34.783 0.00 0.00 41.84 2.40
6822 7066 5.990996 ACATCAACACAAAATGAACCCATTC 59.009 36.000 0.00 0.00 41.84 2.67
6823 7067 5.927819 ACATCAACACAAAATGAACCCATT 58.072 33.333 0.00 0.00 44.38 3.16
6824 7068 5.549742 ACATCAACACAAAATGAACCCAT 57.450 34.783 0.00 0.00 33.66 4.00
6825 7069 5.350504 AACATCAACACAAAATGAACCCA 57.649 34.783 0.00 0.00 0.00 4.51
6826 7070 5.814705 TGAAACATCAACACAAAATGAACCC 59.185 36.000 0.00 0.00 0.00 4.11
6827 7071 6.312426 TGTGAAACATCAACACAAAATGAACC 59.688 34.615 0.00 0.00 45.67 3.62
6828 7072 7.288317 TGTGAAACATCAACACAAAATGAAC 57.712 32.000 0.00 0.00 45.67 3.18
6845 7089 5.416083 ACAAAACTAGCCCTTTTGTGAAAC 58.584 37.500 17.27 0.00 45.69 2.78
6846 7090 5.394773 GGACAAAACTAGCCCTTTTGTGAAA 60.395 40.000 21.00 0.00 46.80 2.69
6847 7091 4.098807 GGACAAAACTAGCCCTTTTGTGAA 59.901 41.667 21.00 0.00 46.80 3.18
6848 7092 3.634910 GGACAAAACTAGCCCTTTTGTGA 59.365 43.478 21.00 0.00 46.80 3.58
6849 7093 3.383185 TGGACAAAACTAGCCCTTTTGTG 59.617 43.478 21.00 3.68 46.80 3.33
6851 7095 4.871933 ATGGACAAAACTAGCCCTTTTG 57.128 40.909 12.91 12.91 42.11 2.44
6852 7096 5.221641 GGAAATGGACAAAACTAGCCCTTTT 60.222 40.000 0.00 0.00 0.00 2.27
6853 7097 4.283467 GGAAATGGACAAAACTAGCCCTTT 59.717 41.667 0.00 0.00 0.00 3.11
6854 7098 3.832490 GGAAATGGACAAAACTAGCCCTT 59.168 43.478 0.00 0.00 0.00 3.95
6855 7099 3.181423 TGGAAATGGACAAAACTAGCCCT 60.181 43.478 0.00 0.00 0.00 5.19
6856 7100 3.056821 GTGGAAATGGACAAAACTAGCCC 60.057 47.826 0.00 0.00 0.00 5.19
6857 7101 3.572255 TGTGGAAATGGACAAAACTAGCC 59.428 43.478 0.00 0.00 0.00 3.93
6858 7102 4.846779 TGTGGAAATGGACAAAACTAGC 57.153 40.909 0.00 0.00 0.00 3.42
6859 7103 9.927668 AATAAATGTGGAAATGGACAAAACTAG 57.072 29.630 0.00 0.00 0.00 2.57
6860 7104 9.703892 CAATAAATGTGGAAATGGACAAAACTA 57.296 29.630 0.00 0.00 0.00 2.24
6861 7105 7.661027 CCAATAAATGTGGAAATGGACAAAACT 59.339 33.333 0.00 0.00 38.54 2.66
6862 7106 7.094848 CCCAATAAATGTGGAAATGGACAAAAC 60.095 37.037 0.00 0.00 38.54 2.43
6863 7107 6.939163 CCCAATAAATGTGGAAATGGACAAAA 59.061 34.615 0.00 0.00 38.54 2.44
6864 7108 6.471146 CCCAATAAATGTGGAAATGGACAAA 58.529 36.000 0.00 0.00 38.54 2.83
6865 7109 5.570439 GCCCAATAAATGTGGAAATGGACAA 60.570 40.000 0.00 0.00 38.54 3.18
6866 7110 4.081198 GCCCAATAAATGTGGAAATGGACA 60.081 41.667 0.00 0.00 38.54 4.02
6867 7111 4.162131 AGCCCAATAAATGTGGAAATGGAC 59.838 41.667 0.00 0.00 38.54 4.02
6868 7112 4.161942 CAGCCCAATAAATGTGGAAATGGA 59.838 41.667 0.00 0.00 38.54 3.41
6869 7113 4.444536 CAGCCCAATAAATGTGGAAATGG 58.555 43.478 0.00 0.00 38.54 3.16
6870 7114 3.872771 GCAGCCCAATAAATGTGGAAATG 59.127 43.478 0.00 0.00 38.54 2.32
6871 7115 3.430651 CGCAGCCCAATAAATGTGGAAAT 60.431 43.478 0.00 0.00 38.54 2.17
6872 7116 2.094286 CGCAGCCCAATAAATGTGGAAA 60.094 45.455 0.00 0.00 38.54 3.13
6873 7117 1.476085 CGCAGCCCAATAAATGTGGAA 59.524 47.619 0.00 0.00 38.54 3.53
6874 7118 1.102154 CGCAGCCCAATAAATGTGGA 58.898 50.000 0.00 0.00 38.54 4.02
6875 7119 0.102844 CCGCAGCCCAATAAATGTGG 59.897 55.000 0.00 0.00 37.02 4.17
6876 7120 0.102844 CCCGCAGCCCAATAAATGTG 59.897 55.000 0.00 0.00 0.00 3.21
6877 7121 1.675720 GCCCGCAGCCCAATAAATGT 61.676 55.000 0.00 0.00 34.35 2.71
6878 7122 1.067916 GCCCGCAGCCCAATAAATG 59.932 57.895 0.00 0.00 34.35 2.32
6879 7123 0.975040 TTGCCCGCAGCCCAATAAAT 60.975 50.000 0.00 0.00 42.71 1.40
6880 7124 1.188219 TTTGCCCGCAGCCCAATAAA 61.188 50.000 0.00 0.00 42.71 1.40
6881 7125 1.188219 TTTTGCCCGCAGCCCAATAA 61.188 50.000 0.00 0.00 42.71 1.40
6882 7126 1.607756 TTTTGCCCGCAGCCCAATA 60.608 52.632 0.00 0.00 42.71 1.90
6883 7127 2.921972 TTTTGCCCGCAGCCCAAT 60.922 55.556 0.00 0.00 42.71 3.16
6884 7128 2.985539 TAGTTTTGCCCGCAGCCCAA 62.986 55.000 0.00 0.00 42.71 4.12
6885 7129 3.499461 TAGTTTTGCCCGCAGCCCA 62.499 57.895 0.00 0.00 42.71 5.36
6886 7130 2.675075 TAGTTTTGCCCGCAGCCC 60.675 61.111 0.00 0.00 42.71 5.19
6887 7131 1.595093 ATGTAGTTTTGCCCGCAGCC 61.595 55.000 0.00 0.00 42.71 4.85
6888 7132 0.456653 CATGTAGTTTTGCCCGCAGC 60.457 55.000 0.00 0.00 44.14 5.25
6889 7133 3.700577 CATGTAGTTTTGCCCGCAG 57.299 52.632 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.