Multiple sequence alignment - TraesCS4B01G207000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G207000 chr4B 100.000 3680 0 0 1 3680 440924289 440920610 0.000000e+00 6796.0
1 TraesCS4B01G207000 chr4B 92.605 622 35 5 1 611 629957310 629957931 0.000000e+00 883.0
2 TraesCS4B01G207000 chr4B 97.778 90 2 0 3467 3556 440920779 440920690 4.920000e-34 156.0
3 TraesCS4B01G207000 chr4B 97.778 90 2 0 3511 3600 440920823 440920734 4.920000e-34 156.0
4 TraesCS4B01G207000 chr4B 86.139 101 12 2 648 746 667411933 667411833 1.400000e-19 108.0
5 TraesCS4B01G207000 chr4B 100.000 46 0 0 3467 3512 440920735 440920690 6.550000e-13 86.1
6 TraesCS4B01G207000 chr4B 100.000 46 0 0 3555 3600 440920823 440920778 6.550000e-13 86.1
7 TraesCS4B01G207000 chr4D 94.166 2777 114 15 743 3512 357527691 357524956 0.000000e+00 4187.0
8 TraesCS4B01G207000 chr4D 92.283 622 37 5 1 611 6227251 6226630 0.000000e+00 872.0
9 TraesCS4B01G207000 chr4D 89.683 126 12 1 3556 3680 357525001 357524876 3.800000e-35 159.0
10 TraesCS4B01G207000 chr4D 87.368 95 5 3 651 744 421420917 421421005 6.500000e-18 102.0
11 TraesCS4B01G207000 chr4A 96.684 2081 59 6 796 2866 108373682 108375762 0.000000e+00 3452.0
12 TraesCS4B01G207000 chr4A 86.970 637 77 6 2922 3556 108375761 108376393 0.000000e+00 712.0
13 TraesCS4B01G207000 chr4A 90.244 123 12 0 3558 3680 108376351 108376473 1.060000e-35 161.0
14 TraesCS4B01G207000 chr4A 86.869 99 7 3 654 746 658229136 658229038 5.030000e-19 106.0
15 TraesCS4B01G207000 chr2B 92.222 630 37 6 1 618 156588829 156589458 0.000000e+00 881.0
16 TraesCS4B01G207000 chr2B 74.267 307 69 9 2947 3247 82865656 82865958 1.790000e-23 121.0
17 TraesCS4B01G207000 chr2B 86.408 103 9 3 648 745 585713226 585713124 1.400000e-19 108.0
18 TraesCS4B01G207000 chr3D 92.468 624 34 7 1 611 559108861 559109484 0.000000e+00 880.0
19 TraesCS4B01G207000 chr3D 92.122 622 38 6 1 611 533719030 533718409 0.000000e+00 867.0
20 TraesCS4B01G207000 chr3A 92.444 622 36 5 1 611 735598909 735599530 0.000000e+00 878.0
21 TraesCS4B01G207000 chr3A 74.595 370 71 14 2952 3314 730806485 730806132 1.380000e-29 141.0
22 TraesCS4B01G207000 chr3A 86.735 98 10 3 649 744 83750216 83750312 5.030000e-19 106.0
23 TraesCS4B01G207000 chr3A 86.747 83 7 3 3600 3680 740944371 740944291 5.060000e-14 89.8
24 TraesCS4B01G207000 chr1B 92.444 622 36 5 1 611 269218883 269218262 0.000000e+00 878.0
25 TraesCS4B01G207000 chr1B 92.283 622 37 5 1 611 644278220 644278841 0.000000e+00 872.0
26 TraesCS4B01G207000 chr1B 91.746 630 41 5 1 619 25227732 25227103 0.000000e+00 865.0
27 TraesCS4B01G207000 chr1B 78.406 389 58 5 2952 3340 511964470 511964108 2.860000e-56 230.0
28 TraesCS4B01G207000 chr1B 86.275 102 11 3 648 747 230944841 230944741 1.400000e-19 108.0
29 TraesCS4B01G207000 chr1B 87.234 94 9 3 655 745 70703866 70703959 1.810000e-18 104.0
30 TraesCS4B01G207000 chr7D 78.810 538 96 12 2952 3474 531204324 531203790 2.720000e-91 346.0
31 TraesCS4B01G207000 chr7D 93.056 72 3 2 2952 3022 631270644 631270574 1.810000e-18 104.0
32 TraesCS4B01G207000 chr7D 86.420 81 11 0 3600 3680 44638554 44638634 5.060000e-14 89.8
33 TraesCS4B01G207000 chr7D 86.842 76 9 1 3605 3680 79328249 79328175 2.360000e-12 84.2
34 TraesCS4B01G207000 chr1D 78.571 504 86 8 2952 3452 381965421 381964937 2.760000e-81 313.0
35 TraesCS4B01G207000 chr1D 77.381 504 97 9 2952 3452 233306685 233306196 2.160000e-72 283.0
36 TraesCS4B01G207000 chr1D 81.818 209 36 2 3250 3457 390438398 390438605 1.360000e-39 174.0
37 TraesCS4B01G207000 chr1D 86.747 83 7 3 3600 3680 16261226 16261146 5.060000e-14 89.8
38 TraesCS4B01G207000 chr1A 78.082 511 91 12 2949 3452 314624773 314625269 1.660000e-78 303.0
39 TraesCS4B01G207000 chr1A 87.379 103 9 4 651 751 493292435 493292535 8.350000e-22 115.0
40 TraesCS4B01G207000 chr6A 87.368 95 5 3 653 746 127870707 127870795 6.500000e-18 102.0
41 TraesCS4B01G207000 chrUn 86.420 81 11 0 3600 3680 90731780 90731700 5.060000e-14 89.8
42 TraesCS4B01G207000 chr7B 86.747 83 7 3 3600 3680 37067881 37067961 5.060000e-14 89.8
43 TraesCS4B01G207000 chr6D 86.420 81 11 0 3600 3680 430347891 430347971 5.060000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G207000 chr4B 440920610 440924289 3679 True 1456.040000 6796 99.111200 1 3680 5 chr4B.!!$R2 3679
1 TraesCS4B01G207000 chr4B 629957310 629957931 621 False 883.000000 883 92.605000 1 611 1 chr4B.!!$F1 610
2 TraesCS4B01G207000 chr4D 357524876 357527691 2815 True 2173.000000 4187 91.924500 743 3680 2 chr4D.!!$R2 2937
3 TraesCS4B01G207000 chr4D 6226630 6227251 621 True 872.000000 872 92.283000 1 611 1 chr4D.!!$R1 610
4 TraesCS4B01G207000 chr4A 108373682 108376473 2791 False 1441.666667 3452 91.299333 796 3680 3 chr4A.!!$F1 2884
5 TraesCS4B01G207000 chr2B 156588829 156589458 629 False 881.000000 881 92.222000 1 618 1 chr2B.!!$F2 617
6 TraesCS4B01G207000 chr3D 559108861 559109484 623 False 880.000000 880 92.468000 1 611 1 chr3D.!!$F1 610
7 TraesCS4B01G207000 chr3D 533718409 533719030 621 True 867.000000 867 92.122000 1 611 1 chr3D.!!$R1 610
8 TraesCS4B01G207000 chr3A 735598909 735599530 621 False 878.000000 878 92.444000 1 611 1 chr3A.!!$F2 610
9 TraesCS4B01G207000 chr1B 269218262 269218883 621 True 878.000000 878 92.444000 1 611 1 chr1B.!!$R3 610
10 TraesCS4B01G207000 chr1B 644278220 644278841 621 False 872.000000 872 92.283000 1 611 1 chr1B.!!$F2 610
11 TraesCS4B01G207000 chr1B 25227103 25227732 629 True 865.000000 865 91.746000 1 619 1 chr1B.!!$R1 618
12 TraesCS4B01G207000 chr7D 531203790 531204324 534 True 346.000000 346 78.810000 2952 3474 1 chr7D.!!$R2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 520 0.163146 GCTCGTTTCGGTGCTTGTAC 59.837 55.0 0.00 0.00 0.00 2.90 F
572 584 0.584876 GGTGTTCGTTGTACTGCCAC 59.415 55.0 0.00 0.00 0.00 5.01 F
840 857 0.978146 TGGAGAAGCTAGGCCTCACC 60.978 60.0 9.68 3.01 31.91 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1680 1706 0.109086 CGTTGATGTCGGTGAGCTCT 60.109 55.000 16.19 0.0 0.00 4.09 R
2204 2231 2.026301 GGAGATCGTCTTCGGCGG 59.974 66.667 7.21 0.0 37.69 6.13 R
2788 2815 4.449068 CGCATTACAATGATGTAGAGGTCC 59.551 45.833 6.13 0.0 42.72 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 2.614969 TGGATCCTGGCAAGGGCT 60.615 61.111 14.23 0.00 44.62 5.19
123 124 3.950869 GGAAGGGCTCCGTTTTAGT 57.049 52.632 0.00 0.00 33.37 2.24
124 125 1.735386 GGAAGGGCTCCGTTTTAGTC 58.265 55.000 0.00 0.00 33.37 2.59
125 126 1.002773 GGAAGGGCTCCGTTTTAGTCA 59.997 52.381 0.00 0.00 33.37 3.41
204 210 5.053145 CCTGAAGATGGAATAAAGGTCTCG 58.947 45.833 0.00 0.00 0.00 4.04
273 279 2.741092 GAGGTGTGTCTCCGGCAA 59.259 61.111 0.00 0.00 0.00 4.52
310 316 1.089112 TTGCTCGGATCTCGTCGTTA 58.911 50.000 0.00 0.00 40.32 3.18
319 325 4.143158 CGGATCTCGTCGTTATTCGTCTAT 60.143 45.833 0.00 0.00 40.80 1.98
334 340 3.251487 TCGTCTATGTTCGTGTGTCTTCA 59.749 43.478 0.00 0.00 0.00 3.02
352 358 6.106673 GTCTTCAGTTTGGATCCTTTCGATA 58.893 40.000 14.23 0.00 0.00 2.92
415 421 1.068121 GTCCTATGGGGCCTTAGCAT 58.932 55.000 0.84 0.14 42.56 3.79
511 520 0.163146 GCTCGTTTCGGTGCTTGTAC 59.837 55.000 0.00 0.00 0.00 2.90
572 584 0.584876 GGTGTTCGTTGTACTGCCAC 59.415 55.000 0.00 0.00 0.00 5.01
582 594 2.683968 TGTACTGCCACGATTGAAGAC 58.316 47.619 0.00 0.00 0.00 3.01
592 604 5.690409 GCCACGATTGAAGACGAATAGATTA 59.310 40.000 0.00 0.00 0.00 1.75
605 617 9.892130 AGACGAATAGATTAGAAGTTTTTCCAT 57.108 29.630 0.00 0.00 33.64 3.41
626 638 8.275015 TCCATAAAAATATATACACGCATGGG 57.725 34.615 8.44 8.44 32.02 4.00
627 639 8.103935 TCCATAAAAATATATACACGCATGGGA 58.896 33.333 17.76 0.00 32.02 4.37
628 640 8.735315 CCATAAAAATATATACACGCATGGGAA 58.265 33.333 17.76 1.77 0.00 3.97
629 641 9.554724 CATAAAAATATATACACGCATGGGAAC 57.445 33.333 17.76 0.00 0.00 3.62
630 642 7.817418 AAAAATATATACACGCATGGGAACT 57.183 32.000 17.76 0.53 0.00 3.01
631 643 8.911918 AAAAATATATACACGCATGGGAACTA 57.088 30.769 17.76 2.82 0.00 2.24
632 644 8.547967 AAAATATATACACGCATGGGAACTAG 57.452 34.615 17.76 3.44 0.00 2.57
633 645 6.852420 ATATATACACGCATGGGAACTAGT 57.148 37.500 17.76 8.85 0.00 2.57
634 646 7.949690 ATATATACACGCATGGGAACTAGTA 57.050 36.000 17.76 10.57 0.00 1.82
635 647 6.852420 ATATACACGCATGGGAACTAGTAT 57.148 37.500 17.76 15.81 0.00 2.12
636 648 7.949690 ATATACACGCATGGGAACTAGTATA 57.050 36.000 17.76 17.11 0.00 1.47
637 649 6.659745 ATACACGCATGGGAACTAGTATAA 57.340 37.500 17.76 0.00 0.00 0.98
638 650 4.690122 ACACGCATGGGAACTAGTATAAC 58.310 43.478 17.76 0.00 0.00 1.89
639 651 4.404715 ACACGCATGGGAACTAGTATAACT 59.595 41.667 17.76 0.00 0.00 2.24
640 652 4.745125 CACGCATGGGAACTAGTATAACTG 59.255 45.833 17.76 0.00 0.00 3.16
641 653 4.647853 ACGCATGGGAACTAGTATAACTGA 59.352 41.667 17.76 0.00 0.00 3.41
642 654 5.128171 ACGCATGGGAACTAGTATAACTGAA 59.872 40.000 17.76 0.00 0.00 3.02
643 655 5.692204 CGCATGGGAACTAGTATAACTGAAG 59.308 44.000 3.11 0.00 0.00 3.02
644 656 5.992217 GCATGGGAACTAGTATAACTGAAGG 59.008 44.000 0.00 0.00 0.00 3.46
645 657 6.183360 GCATGGGAACTAGTATAACTGAAGGA 60.183 42.308 0.00 0.00 0.00 3.36
646 658 7.635089 GCATGGGAACTAGTATAACTGAAGGAA 60.635 40.741 0.00 0.00 0.00 3.36
647 659 7.801893 TGGGAACTAGTATAACTGAAGGAAA 57.198 36.000 0.00 0.00 0.00 3.13
648 660 7.618137 TGGGAACTAGTATAACTGAAGGAAAC 58.382 38.462 0.00 0.00 0.00 2.78
649 661 7.236019 TGGGAACTAGTATAACTGAAGGAAACA 59.764 37.037 0.00 0.00 0.00 2.83
650 662 8.098912 GGGAACTAGTATAACTGAAGGAAACAA 58.901 37.037 0.00 0.00 0.00 2.83
651 663 9.668497 GGAACTAGTATAACTGAAGGAAACAAT 57.332 33.333 0.00 0.00 0.00 2.71
660 672 6.893020 ACTGAAGGAAACAATATACTCCCT 57.107 37.500 0.00 0.00 0.00 4.20
661 673 6.890293 ACTGAAGGAAACAATATACTCCCTC 58.110 40.000 0.00 0.00 0.00 4.30
662 674 6.674419 ACTGAAGGAAACAATATACTCCCTCT 59.326 38.462 0.00 0.00 0.00 3.69
663 675 6.889198 TGAAGGAAACAATATACTCCCTCTG 58.111 40.000 0.00 0.00 0.00 3.35
664 676 6.443849 TGAAGGAAACAATATACTCCCTCTGT 59.556 38.462 0.00 0.00 0.00 3.41
665 677 6.893020 AGGAAACAATATACTCCCTCTGTT 57.107 37.500 0.00 0.00 0.00 3.16
666 678 7.272144 AGGAAACAATATACTCCCTCTGTTT 57.728 36.000 0.00 0.00 39.12 2.83
667 679 7.339482 AGGAAACAATATACTCCCTCTGTTTC 58.661 38.462 14.17 14.17 46.01 2.78
669 681 8.561738 GAAACAATATACTCCCTCTGTTTCAA 57.438 34.615 16.52 0.00 46.01 2.69
670 682 8.934023 AAACAATATACTCCCTCTGTTTCAAA 57.066 30.769 0.00 0.00 32.99 2.69
671 683 8.934023 AACAATATACTCCCTCTGTTTCAAAA 57.066 30.769 0.00 0.00 0.00 2.44
672 684 9.533831 AACAATATACTCCCTCTGTTTCAAAAT 57.466 29.630 0.00 0.00 0.00 1.82
677 689 8.970859 ATACTCCCTCTGTTTCAAAATAGATG 57.029 34.615 2.91 1.27 35.92 2.90
678 690 7.020827 ACTCCCTCTGTTTCAAAATAGATGA 57.979 36.000 2.91 3.20 35.92 2.92
679 691 6.881602 ACTCCCTCTGTTTCAAAATAGATGAC 59.118 38.462 2.91 0.00 35.92 3.06
680 692 6.180472 TCCCTCTGTTTCAAAATAGATGACC 58.820 40.000 2.91 0.00 35.92 4.02
681 693 5.358160 CCCTCTGTTTCAAAATAGATGACCC 59.642 44.000 2.91 0.00 35.92 4.46
682 694 5.945784 CCTCTGTTTCAAAATAGATGACCCA 59.054 40.000 2.91 0.00 35.92 4.51
683 695 6.434028 CCTCTGTTTCAAAATAGATGACCCAA 59.566 38.462 2.91 0.00 35.92 4.12
684 696 7.214467 TCTGTTTCAAAATAGATGACCCAAC 57.786 36.000 0.00 0.00 32.24 3.77
685 697 7.004086 TCTGTTTCAAAATAGATGACCCAACT 58.996 34.615 0.00 0.00 32.24 3.16
686 698 7.505585 TCTGTTTCAAAATAGATGACCCAACTT 59.494 33.333 0.00 0.00 32.24 2.66
687 699 7.657336 TGTTTCAAAATAGATGACCCAACTTC 58.343 34.615 0.00 0.00 0.00 3.01
688 700 6.494893 TTCAAAATAGATGACCCAACTTCG 57.505 37.500 0.00 0.00 0.00 3.79
689 701 5.556915 TCAAAATAGATGACCCAACTTCGT 58.443 37.500 0.00 0.00 0.00 3.85
690 702 6.703319 TCAAAATAGATGACCCAACTTCGTA 58.297 36.000 0.00 0.00 0.00 3.43
691 703 6.592607 TCAAAATAGATGACCCAACTTCGTAC 59.407 38.462 0.00 0.00 0.00 3.67
692 704 5.934402 AATAGATGACCCAACTTCGTACT 57.066 39.130 0.00 0.00 0.00 2.73
693 705 7.414222 AAATAGATGACCCAACTTCGTACTA 57.586 36.000 0.00 0.00 0.00 1.82
694 706 7.414222 AATAGATGACCCAACTTCGTACTAA 57.586 36.000 0.00 0.00 0.00 2.24
695 707 5.934402 AGATGACCCAACTTCGTACTAAT 57.066 39.130 0.00 0.00 0.00 1.73
696 708 6.295719 AGATGACCCAACTTCGTACTAATT 57.704 37.500 0.00 0.00 0.00 1.40
697 709 6.708285 AGATGACCCAACTTCGTACTAATTT 58.292 36.000 0.00 0.00 0.00 1.82
698 710 7.844009 AGATGACCCAACTTCGTACTAATTTA 58.156 34.615 0.00 0.00 0.00 1.40
699 711 7.980099 AGATGACCCAACTTCGTACTAATTTAG 59.020 37.037 1.79 1.79 0.00 1.85
700 712 6.996509 TGACCCAACTTCGTACTAATTTAGT 58.003 36.000 13.36 13.36 42.68 2.24
701 713 8.121305 TGACCCAACTTCGTACTAATTTAGTA 57.879 34.615 11.43 11.43 40.14 1.82
702 714 8.246180 TGACCCAACTTCGTACTAATTTAGTAG 58.754 37.037 15.05 8.94 41.59 2.57
703 715 8.353423 ACCCAACTTCGTACTAATTTAGTAGA 57.647 34.615 15.05 11.92 41.59 2.59
704 716 8.806146 ACCCAACTTCGTACTAATTTAGTAGAA 58.194 33.333 15.05 16.73 41.59 2.10
705 717 9.643693 CCCAACTTCGTACTAATTTAGTAGAAA 57.356 33.333 15.05 11.48 41.59 2.52
711 723 9.643693 TTCGTACTAATTTAGTAGAAAGTTGGG 57.356 33.333 15.05 0.34 41.59 4.12
712 724 8.806146 TCGTACTAATTTAGTAGAAAGTTGGGT 58.194 33.333 15.05 0.00 41.59 4.51
713 725 9.428097 CGTACTAATTTAGTAGAAAGTTGGGTT 57.572 33.333 15.05 0.00 41.59 4.11
716 728 9.074576 ACTAATTTAGTAGAAAGTTGGGTTTGG 57.925 33.333 7.31 0.00 37.23 3.28
717 729 6.911250 ATTTAGTAGAAAGTTGGGTTTGGG 57.089 37.500 0.00 0.00 0.00 4.12
718 730 3.965470 AGTAGAAAGTTGGGTTTGGGT 57.035 42.857 0.00 0.00 0.00 4.51
719 731 3.828921 AGTAGAAAGTTGGGTTTGGGTC 58.171 45.455 0.00 0.00 0.00 4.46
720 732 2.838637 AGAAAGTTGGGTTTGGGTCA 57.161 45.000 0.00 0.00 0.00 4.02
721 733 3.328535 AGAAAGTTGGGTTTGGGTCAT 57.671 42.857 0.00 0.00 0.00 3.06
722 734 3.230976 AGAAAGTTGGGTTTGGGTCATC 58.769 45.455 0.00 0.00 0.00 2.92
723 735 3.117131 AGAAAGTTGGGTTTGGGTCATCT 60.117 43.478 0.00 0.00 0.00 2.90
724 736 4.105697 AGAAAGTTGGGTTTGGGTCATCTA 59.894 41.667 0.00 0.00 0.00 1.98
725 737 4.675063 AAGTTGGGTTTGGGTCATCTAT 57.325 40.909 0.00 0.00 0.00 1.98
726 738 4.675063 AGTTGGGTTTGGGTCATCTATT 57.325 40.909 0.00 0.00 0.00 1.73
727 739 5.010708 AGTTGGGTTTGGGTCATCTATTT 57.989 39.130 0.00 0.00 0.00 1.40
728 740 5.402630 AGTTGGGTTTGGGTCATCTATTTT 58.597 37.500 0.00 0.00 0.00 1.82
729 741 5.245977 AGTTGGGTTTGGGTCATCTATTTTG 59.754 40.000 0.00 0.00 0.00 2.44
730 742 4.093011 TGGGTTTGGGTCATCTATTTTGG 58.907 43.478 0.00 0.00 0.00 3.28
731 743 4.202727 TGGGTTTGGGTCATCTATTTTGGA 60.203 41.667 0.00 0.00 0.00 3.53
732 744 4.775253 GGGTTTGGGTCATCTATTTTGGAA 59.225 41.667 0.00 0.00 0.00 3.53
733 745 5.337250 GGGTTTGGGTCATCTATTTTGGAAC 60.337 44.000 0.00 0.00 0.00 3.62
734 746 5.399013 GTTTGGGTCATCTATTTTGGAACG 58.601 41.667 0.00 0.00 0.00 3.95
735 747 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
736 748 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
737 749 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
738 750 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
739 751 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
740 752 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
741 753 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
753 765 2.764572 ACGGAGGGAGTATAACTTGGTG 59.235 50.000 0.00 0.00 0.00 4.17
754 766 2.483188 CGGAGGGAGTATAACTTGGTGC 60.483 54.545 0.00 0.00 0.00 5.01
760 772 2.597305 GAGTATAACTTGGTGCGTGTCG 59.403 50.000 0.00 0.00 0.00 4.35
769 781 2.016704 GTGCGTGTCGGACTGTCAG 61.017 63.158 10.38 5.82 44.36 3.51
781 793 4.707934 TCGGACTGTCAGTAATCCATGTTA 59.292 41.667 5.21 0.00 0.00 2.41
787 799 7.168219 ACTGTCAGTAATCCATGTTACATGTT 58.832 34.615 21.84 13.80 37.10 2.71
840 857 0.978146 TGGAGAAGCTAGGCCTCACC 60.978 60.000 9.68 3.01 31.91 4.02
843 860 4.148825 AAGCTAGGCCTCACCGCG 62.149 66.667 9.68 0.00 46.52 6.46
901 923 6.017605 GGTATATTGCTCCATATGCTACATGC 60.018 42.308 0.00 0.00 43.25 4.06
906 928 2.078392 TCCATATGCTACATGCGCATG 58.922 47.619 41.02 41.02 46.69 4.06
986 1011 6.059484 AGAACTAACGATAGCTAGCTCTCTT 58.941 40.000 23.26 17.42 35.87 2.85
995 1020 6.307800 CGATAGCTAGCTCTCTTTTAGCATTC 59.692 42.308 23.26 0.00 42.62 2.67
1044 1070 2.357881 CTCCACGAAGCAGCAGCA 60.358 61.111 3.17 0.00 45.49 4.41
1047 1073 4.099170 CACGAAGCAGCAGCAGCC 62.099 66.667 6.10 0.00 45.49 4.85
1099 1125 1.072331 TGCTCTTCTCCCTTGTGGTTC 59.928 52.381 0.00 0.00 34.77 3.62
1123 1149 2.061773 CGCTCCTACTCCGCATTATTG 58.938 52.381 0.00 0.00 0.00 1.90
1242 1268 2.124236 CCCTACGTCTCCCTCGCT 60.124 66.667 0.00 0.00 0.00 4.93
1365 1391 1.374125 CCACGACCACATCTTCGCA 60.374 57.895 0.00 0.00 38.88 5.10
1535 1561 2.683933 GGAAGAGGAGGTCCGGCA 60.684 66.667 0.00 0.00 42.08 5.69
1563 1589 3.918253 AAAGATCGCCAAGGCCGCA 62.918 57.895 5.34 0.00 37.98 5.69
1590 1616 2.982130 GAGGCCGTGGACATGAGT 59.018 61.111 0.00 0.00 0.00 3.41
2452 2479 1.376609 GAATGGAGCCGGCGTTGATT 61.377 55.000 23.20 17.41 0.00 2.57
2855 2882 8.539770 TGTGAATTGTTTTTATGTGTGTTGTT 57.460 26.923 0.00 0.00 0.00 2.83
2873 2900 8.841300 TGTGTTGTTGCATTTGTTATCTAAGTA 58.159 29.630 0.00 0.00 0.00 2.24
2881 2908 8.397906 TGCATTTGTTATCTAAGTAATCAGCAC 58.602 33.333 0.00 0.00 0.00 4.40
2981 3008 1.083242 TTTTCGTATACGCCGGGTGC 61.083 55.000 20.42 0.00 39.60 5.01
3031 3058 0.668706 CACTCGGCAACCTCACAGAG 60.669 60.000 0.00 0.00 0.00 3.35
3065 3092 2.035832 TCTCGACAACAAGCACATCTCA 59.964 45.455 0.00 0.00 0.00 3.27
3066 3093 2.135139 TCGACAACAAGCACATCTCAC 58.865 47.619 0.00 0.00 0.00 3.51
3073 3100 3.023119 ACAAGCACATCTCACCAAACAA 58.977 40.909 0.00 0.00 0.00 2.83
3084 3111 4.155826 TCTCACCAAACAAAGGATATTGCG 59.844 41.667 0.00 0.00 33.52 4.85
3092 3119 5.353394 ACAAAGGATATTGCGGAGAGTAA 57.647 39.130 0.00 0.00 33.52 2.24
3099 3126 7.680730 AGGATATTGCGGAGAGTAATATTTGT 58.319 34.615 0.00 0.00 44.48 2.83
3126 3155 1.270550 GGTCACACTTGGCAAATCCTG 59.729 52.381 0.00 0.00 35.26 3.86
3151 3180 3.596066 GAGAGCCAAGCAGCCGTCA 62.596 63.158 0.00 0.00 0.00 4.35
3273 3310 2.037144 GATTAGTCCCACCTCGCCTAA 58.963 52.381 0.00 0.00 0.00 2.69
3327 3367 2.977772 AGTCCAGATGCAGTAAGCTC 57.022 50.000 0.00 0.00 45.94 4.09
3333 3373 0.530870 GATGCAGTAAGCTCCGGTCC 60.531 60.000 0.00 0.00 45.94 4.46
3406 3446 2.092538 CCTGGGCAGAGAAGATTCACAT 60.093 50.000 0.00 0.00 0.00 3.21
3491 3573 9.088987 ACTTTTTAGCCATTTTCCTAATCTTCA 57.911 29.630 0.00 0.00 0.00 3.02
3492 3574 9.358872 CTTTTTAGCCATTTTCCTAATCTTCAC 57.641 33.333 0.00 0.00 0.00 3.18
3493 3575 7.404671 TTTAGCCATTTTCCTAATCTTCACC 57.595 36.000 0.00 0.00 0.00 4.02
3494 3576 5.198602 AGCCATTTTCCTAATCTTCACCT 57.801 39.130 0.00 0.00 0.00 4.00
3495 3577 4.952335 AGCCATTTTCCTAATCTTCACCTG 59.048 41.667 0.00 0.00 0.00 4.00
3496 3578 4.706962 GCCATTTTCCTAATCTTCACCTGT 59.293 41.667 0.00 0.00 0.00 4.00
3497 3579 5.185828 GCCATTTTCCTAATCTTCACCTGTT 59.814 40.000 0.00 0.00 0.00 3.16
3498 3580 6.625960 GCCATTTTCCTAATCTTCACCTGTTC 60.626 42.308 0.00 0.00 0.00 3.18
3499 3581 6.127619 CCATTTTCCTAATCTTCACCTGTTCC 60.128 42.308 0.00 0.00 0.00 3.62
3500 3582 3.887621 TCCTAATCTTCACCTGTTCCG 57.112 47.619 0.00 0.00 0.00 4.30
3501 3583 2.093658 TCCTAATCTTCACCTGTTCCGC 60.094 50.000 0.00 0.00 0.00 5.54
3502 3584 2.093447 CCTAATCTTCACCTGTTCCGCT 60.093 50.000 0.00 0.00 0.00 5.52
3503 3585 2.568623 AATCTTCACCTGTTCCGCTT 57.431 45.000 0.00 0.00 0.00 4.68
3504 3586 1.813513 ATCTTCACCTGTTCCGCTTG 58.186 50.000 0.00 0.00 0.00 4.01
3505 3587 0.468226 TCTTCACCTGTTCCGCTTGT 59.532 50.000 0.00 0.00 0.00 3.16
3506 3588 1.689813 TCTTCACCTGTTCCGCTTGTA 59.310 47.619 0.00 0.00 0.00 2.41
3507 3589 2.103432 TCTTCACCTGTTCCGCTTGTAA 59.897 45.455 0.00 0.00 0.00 2.41
3508 3590 2.623878 TCACCTGTTCCGCTTGTAAA 57.376 45.000 0.00 0.00 0.00 2.01
3509 3591 2.215196 TCACCTGTTCCGCTTGTAAAC 58.785 47.619 0.00 0.00 0.00 2.01
3510 3592 1.265905 CACCTGTTCCGCTTGTAAACC 59.734 52.381 0.00 0.00 0.00 3.27
3511 3593 1.142262 ACCTGTTCCGCTTGTAAACCT 59.858 47.619 0.00 0.00 0.00 3.50
3512 3594 2.227194 CCTGTTCCGCTTGTAAACCTT 58.773 47.619 0.00 0.00 0.00 3.50
3513 3595 2.621526 CCTGTTCCGCTTGTAAACCTTT 59.378 45.455 0.00 0.00 0.00 3.11
3514 3596 3.067601 CCTGTTCCGCTTGTAAACCTTTT 59.932 43.478 0.00 0.00 0.00 2.27
3515 3597 4.440940 CCTGTTCCGCTTGTAAACCTTTTT 60.441 41.667 0.00 0.00 0.00 1.94
3516 3598 5.221087 CCTGTTCCGCTTGTAAACCTTTTTA 60.221 40.000 0.00 0.00 0.00 1.52
3517 3599 5.823353 TGTTCCGCTTGTAAACCTTTTTAG 58.177 37.500 0.00 0.00 0.00 1.85
3518 3600 4.492791 TCCGCTTGTAAACCTTTTTAGC 57.507 40.909 0.00 0.00 0.00 3.09
3519 3601 3.253921 TCCGCTTGTAAACCTTTTTAGCC 59.746 43.478 0.00 0.00 0.00 3.93
3520 3602 3.004944 CCGCTTGTAAACCTTTTTAGCCA 59.995 43.478 0.00 0.00 0.00 4.75
3521 3603 4.321675 CCGCTTGTAAACCTTTTTAGCCAT 60.322 41.667 0.00 0.00 0.00 4.40
3522 3604 5.227152 CGCTTGTAAACCTTTTTAGCCATT 58.773 37.500 0.00 0.00 0.00 3.16
3556 3638 3.066203 CACTTGTTCCGCTTGTAAACCTT 59.934 43.478 0.00 0.00 0.00 3.50
3557 3639 3.697542 ACTTGTTCCGCTTGTAAACCTTT 59.302 39.130 0.00 0.00 0.00 3.11
3558 3640 4.158949 ACTTGTTCCGCTTGTAAACCTTTT 59.841 37.500 0.00 0.00 0.00 2.27
3559 3641 4.722361 TGTTCCGCTTGTAAACCTTTTT 57.278 36.364 0.00 0.00 0.00 1.94
3560 3642 5.831702 TGTTCCGCTTGTAAACCTTTTTA 57.168 34.783 0.00 0.00 0.00 1.52
3561 3643 5.823353 TGTTCCGCTTGTAAACCTTTTTAG 58.177 37.500 0.00 0.00 0.00 1.85
3562 3644 4.492791 TCCGCTTGTAAACCTTTTTAGC 57.507 40.909 0.00 0.00 0.00 3.09
3563 3645 3.253921 TCCGCTTGTAAACCTTTTTAGCC 59.746 43.478 0.00 0.00 0.00 3.93
3564 3646 3.004944 CCGCTTGTAAACCTTTTTAGCCA 59.995 43.478 0.00 0.00 0.00 4.75
3565 3647 4.321675 CCGCTTGTAAACCTTTTTAGCCAT 60.322 41.667 0.00 0.00 0.00 4.40
3566 3648 5.227152 CGCTTGTAAACCTTTTTAGCCATT 58.773 37.500 0.00 0.00 0.00 3.16
3567 3649 5.694458 CGCTTGTAAACCTTTTTAGCCATTT 59.306 36.000 0.00 0.00 0.00 2.32
3568 3650 6.201997 CGCTTGTAAACCTTTTTAGCCATTTT 59.798 34.615 0.00 0.00 0.00 1.82
3569 3651 7.568679 CGCTTGTAAACCTTTTTAGCCATTTTC 60.569 37.037 0.00 0.00 0.00 2.29
3570 3652 7.307751 GCTTGTAAACCTTTTTAGCCATTTTCC 60.308 37.037 0.00 0.00 0.00 3.13
3571 3653 7.368198 TGTAAACCTTTTTAGCCATTTTCCT 57.632 32.000 0.00 0.00 0.00 3.36
3572 3654 8.480133 TGTAAACCTTTTTAGCCATTTTCCTA 57.520 30.769 0.00 0.00 0.00 2.94
3573 3655 8.925338 TGTAAACCTTTTTAGCCATTTTCCTAA 58.075 29.630 0.00 0.00 0.00 2.69
3574 3656 9.938280 GTAAACCTTTTTAGCCATTTTCCTAAT 57.062 29.630 0.00 0.00 0.00 1.73
3576 3658 8.435931 AACCTTTTTAGCCATTTTCCTAATCT 57.564 30.769 0.00 0.00 0.00 2.40
3577 3659 8.435931 ACCTTTTTAGCCATTTTCCTAATCTT 57.564 30.769 0.00 0.00 0.00 2.40
3578 3660 8.531982 ACCTTTTTAGCCATTTTCCTAATCTTC 58.468 33.333 0.00 0.00 0.00 2.87
3579 3661 8.531146 CCTTTTTAGCCATTTTCCTAATCTTCA 58.469 33.333 0.00 0.00 0.00 3.02
3580 3662 9.358872 CTTTTTAGCCATTTTCCTAATCTTCAC 57.641 33.333 0.00 0.00 0.00 3.18
3581 3663 7.404671 TTTAGCCATTTTCCTAATCTTCACC 57.595 36.000 0.00 0.00 0.00 4.02
3582 3664 5.198602 AGCCATTTTCCTAATCTTCACCT 57.801 39.130 0.00 0.00 0.00 4.00
3583 3665 4.952335 AGCCATTTTCCTAATCTTCACCTG 59.048 41.667 0.00 0.00 0.00 4.00
3584 3666 4.706962 GCCATTTTCCTAATCTTCACCTGT 59.293 41.667 0.00 0.00 0.00 4.00
3585 3667 5.185828 GCCATTTTCCTAATCTTCACCTGTT 59.814 40.000 0.00 0.00 0.00 3.16
3586 3668 6.625960 GCCATTTTCCTAATCTTCACCTGTTC 60.626 42.308 0.00 0.00 0.00 3.18
3587 3669 6.127619 CCATTTTCCTAATCTTCACCTGTTCC 60.128 42.308 0.00 0.00 0.00 3.62
3588 3670 3.887621 TCCTAATCTTCACCTGTTCCG 57.112 47.619 0.00 0.00 0.00 4.30
3589 3671 2.093658 TCCTAATCTTCACCTGTTCCGC 60.094 50.000 0.00 0.00 0.00 5.54
3590 3672 2.093447 CCTAATCTTCACCTGTTCCGCT 60.093 50.000 0.00 0.00 0.00 5.52
3591 3673 2.568623 AATCTTCACCTGTTCCGCTT 57.431 45.000 0.00 0.00 0.00 4.68
3592 3674 1.813513 ATCTTCACCTGTTCCGCTTG 58.186 50.000 0.00 0.00 0.00 4.01
3593 3675 0.468226 TCTTCACCTGTTCCGCTTGT 59.532 50.000 0.00 0.00 0.00 3.16
3594 3676 1.689813 TCTTCACCTGTTCCGCTTGTA 59.310 47.619 0.00 0.00 0.00 2.41
3595 3677 2.103432 TCTTCACCTGTTCCGCTTGTAA 59.897 45.455 0.00 0.00 0.00 2.41
3596 3678 2.623878 TCACCTGTTCCGCTTGTAAA 57.376 45.000 0.00 0.00 0.00 2.01
3597 3679 2.215196 TCACCTGTTCCGCTTGTAAAC 58.785 47.619 0.00 0.00 0.00 2.01
3598 3680 1.265905 CACCTGTTCCGCTTGTAAACC 59.734 52.381 0.00 0.00 0.00 3.27
3599 3681 1.142262 ACCTGTTCCGCTTGTAAACCT 59.858 47.619 0.00 0.00 0.00 3.50
3611 3693 4.621038 GCTTGTAAACCTAGTCTCTGGGTC 60.621 50.000 5.34 0.00 44.56 4.46
3616 3698 1.634459 ACCTAGTCTCTGGGTCTCGAA 59.366 52.381 0.00 0.00 41.54 3.71
3638 3720 1.746787 GGGAACTTGTTCGGTTTGTGT 59.253 47.619 7.32 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 3.434940 AATGACTAAAACGGAGCCCTT 57.565 42.857 0.00 0.00 0.00 3.95
273 279 5.297776 CGAGCAAATCCACCAAAGATAGATT 59.702 40.000 0.00 0.00 0.00 2.40
310 316 4.436242 AGACACACGAACATAGACGAAT 57.564 40.909 0.00 0.00 0.00 3.34
319 325 2.675844 CCAAACTGAAGACACACGAACA 59.324 45.455 0.00 0.00 0.00 3.18
334 340 6.158023 ACGTATATCGAAAGGATCCAAACT 57.842 37.500 15.82 0.00 42.86 2.66
352 358 5.333798 CCGCCATCGATGAAAAATAACGTAT 60.334 40.000 26.86 0.00 38.10 3.06
370 376 1.178534 CCCAGAACAACAACCGCCAT 61.179 55.000 0.00 0.00 0.00 4.40
371 377 1.826054 CCCAGAACAACAACCGCCA 60.826 57.895 0.00 0.00 0.00 5.69
415 421 0.536687 AGACAGTCGGGAAGTCGTCA 60.537 55.000 0.00 0.00 37.36 4.35
497 506 1.774639 GACGAGTACAAGCACCGAAA 58.225 50.000 0.00 0.00 0.00 3.46
511 520 1.086067 TCCGTACACCTAGCGACGAG 61.086 60.000 0.00 0.00 37.50 4.18
572 584 8.789881 ACTTCTAATCTATTCGTCTTCAATCG 57.210 34.615 0.00 0.00 0.00 3.34
605 617 8.911918 AGTTCCCATGCGTGTATATATTTTTA 57.088 30.769 4.96 0.00 0.00 1.52
611 623 7.949690 ATACTAGTTCCCATGCGTGTATATA 57.050 36.000 0.00 0.00 0.00 0.86
613 625 7.449395 AGTTATACTAGTTCCCATGCGTGTATA 59.551 37.037 0.00 0.00 0.00 1.47
619 631 5.196341 TCAGTTATACTAGTTCCCATGCG 57.804 43.478 0.00 0.00 0.00 4.73
620 632 5.992217 CCTTCAGTTATACTAGTTCCCATGC 59.008 44.000 0.00 0.00 0.00 4.06
621 633 7.361457 TCCTTCAGTTATACTAGTTCCCATG 57.639 40.000 0.00 0.00 0.00 3.66
622 634 7.989947 TTCCTTCAGTTATACTAGTTCCCAT 57.010 36.000 0.00 0.00 0.00 4.00
623 635 7.236019 TGTTTCCTTCAGTTATACTAGTTCCCA 59.764 37.037 0.00 0.00 0.00 4.37
624 636 7.618137 TGTTTCCTTCAGTTATACTAGTTCCC 58.382 38.462 0.00 0.00 0.00 3.97
625 637 9.668497 ATTGTTTCCTTCAGTTATACTAGTTCC 57.332 33.333 0.00 0.00 0.00 3.62
634 646 9.004231 AGGGAGTATATTGTTTCCTTCAGTTAT 57.996 33.333 0.00 0.00 0.00 1.89
635 647 8.388656 AGGGAGTATATTGTTTCCTTCAGTTA 57.611 34.615 0.00 0.00 0.00 2.24
636 648 7.182930 AGAGGGAGTATATTGTTTCCTTCAGTT 59.817 37.037 4.63 0.00 38.04 3.16
637 649 6.674419 AGAGGGAGTATATTGTTTCCTTCAGT 59.326 38.462 4.63 0.00 38.04 3.41
638 650 6.989169 CAGAGGGAGTATATTGTTTCCTTCAG 59.011 42.308 4.63 0.00 38.04 3.02
639 651 6.443849 ACAGAGGGAGTATATTGTTTCCTTCA 59.556 38.462 4.63 0.00 38.04 3.02
640 652 6.890293 ACAGAGGGAGTATATTGTTTCCTTC 58.110 40.000 0.00 0.00 36.41 3.46
641 653 6.893020 ACAGAGGGAGTATATTGTTTCCTT 57.107 37.500 0.00 0.00 0.00 3.36
642 654 6.893020 AACAGAGGGAGTATATTGTTTCCT 57.107 37.500 0.00 0.00 0.00 3.36
643 655 7.110155 TGAAACAGAGGGAGTATATTGTTTCC 58.890 38.462 19.23 5.05 46.77 3.13
645 657 8.934023 TTTGAAACAGAGGGAGTATATTGTTT 57.066 30.769 0.56 0.56 40.32 2.83
646 658 8.934023 TTTTGAAACAGAGGGAGTATATTGTT 57.066 30.769 0.00 0.00 0.00 2.83
652 664 8.772250 TCATCTATTTTGAAACAGAGGGAGTAT 58.228 33.333 0.00 0.00 0.00 2.12
653 665 8.041323 GTCATCTATTTTGAAACAGAGGGAGTA 58.959 37.037 0.00 0.00 0.00 2.59
654 666 6.881602 GTCATCTATTTTGAAACAGAGGGAGT 59.118 38.462 0.00 0.00 0.00 3.85
655 667 6.317391 GGTCATCTATTTTGAAACAGAGGGAG 59.683 42.308 0.00 0.00 0.00 4.30
656 668 6.180472 GGTCATCTATTTTGAAACAGAGGGA 58.820 40.000 0.00 0.00 0.00 4.20
657 669 5.358160 GGGTCATCTATTTTGAAACAGAGGG 59.642 44.000 0.00 0.00 0.00 4.30
658 670 5.945784 TGGGTCATCTATTTTGAAACAGAGG 59.054 40.000 0.00 0.00 0.00 3.69
659 671 7.175641 AGTTGGGTCATCTATTTTGAAACAGAG 59.824 37.037 0.00 0.00 0.00 3.35
660 672 7.004086 AGTTGGGTCATCTATTTTGAAACAGA 58.996 34.615 0.00 0.00 0.00 3.41
661 673 7.219484 AGTTGGGTCATCTATTTTGAAACAG 57.781 36.000 0.00 0.00 0.00 3.16
662 674 7.521423 CGAAGTTGGGTCATCTATTTTGAAACA 60.521 37.037 0.00 0.00 0.00 2.83
663 675 6.801862 CGAAGTTGGGTCATCTATTTTGAAAC 59.198 38.462 0.00 0.00 0.00 2.78
664 676 6.488683 ACGAAGTTGGGTCATCTATTTTGAAA 59.511 34.615 0.00 0.00 37.78 2.69
665 677 6.001460 ACGAAGTTGGGTCATCTATTTTGAA 58.999 36.000 0.00 0.00 37.78 2.69
666 678 5.556915 ACGAAGTTGGGTCATCTATTTTGA 58.443 37.500 0.00 0.00 37.78 2.69
667 679 5.880054 ACGAAGTTGGGTCATCTATTTTG 57.120 39.130 0.00 0.00 37.78 2.44
668 680 6.708285 AGTACGAAGTTGGGTCATCTATTTT 58.292 36.000 0.00 0.00 37.78 1.82
669 681 6.295719 AGTACGAAGTTGGGTCATCTATTT 57.704 37.500 0.00 0.00 37.78 1.40
670 682 5.934402 AGTACGAAGTTGGGTCATCTATT 57.066 39.130 0.00 0.00 37.78 1.73
671 683 7.598759 ATTAGTACGAAGTTGGGTCATCTAT 57.401 36.000 0.00 0.00 37.78 1.98
672 684 7.414222 AATTAGTACGAAGTTGGGTCATCTA 57.586 36.000 0.00 0.00 37.78 1.98
673 685 5.934402 ATTAGTACGAAGTTGGGTCATCT 57.066 39.130 0.00 0.00 37.78 2.90
674 686 6.980051 AAATTAGTACGAAGTTGGGTCATC 57.020 37.500 0.50 0.00 37.78 2.92
675 687 7.618137 ACTAAATTAGTACGAAGTTGGGTCAT 58.382 34.615 14.54 0.00 37.78 3.06
676 688 6.996509 ACTAAATTAGTACGAAGTTGGGTCA 58.003 36.000 14.54 0.00 37.78 4.02
677 689 8.462016 TCTACTAAATTAGTACGAAGTTGGGTC 58.538 37.037 14.54 0.00 45.11 4.46
678 690 8.353423 TCTACTAAATTAGTACGAAGTTGGGT 57.647 34.615 14.54 12.80 45.11 4.51
679 691 9.643693 TTTCTACTAAATTAGTACGAAGTTGGG 57.356 33.333 14.54 8.78 45.11 4.12
685 697 9.643693 CCCAACTTTCTACTAAATTAGTACGAA 57.356 33.333 8.67 12.55 40.14 3.85
686 698 8.806146 ACCCAACTTTCTACTAAATTAGTACGA 58.194 33.333 8.67 8.07 40.14 3.43
687 699 8.992835 ACCCAACTTTCTACTAAATTAGTACG 57.007 34.615 8.67 6.16 40.14 3.67
690 702 9.074576 CCAAACCCAACTTTCTACTAAATTAGT 57.925 33.333 10.75 10.75 42.68 2.24
691 703 8.520351 CCCAAACCCAACTTTCTACTAAATTAG 58.480 37.037 0.00 0.00 0.00 1.73
692 704 8.005976 ACCCAAACCCAACTTTCTACTAAATTA 58.994 33.333 0.00 0.00 0.00 1.40
693 705 6.842280 ACCCAAACCCAACTTTCTACTAAATT 59.158 34.615 0.00 0.00 0.00 1.82
694 706 6.378745 ACCCAAACCCAACTTTCTACTAAAT 58.621 36.000 0.00 0.00 0.00 1.40
695 707 5.768752 ACCCAAACCCAACTTTCTACTAAA 58.231 37.500 0.00 0.00 0.00 1.85
696 708 5.104024 TGACCCAAACCCAACTTTCTACTAA 60.104 40.000 0.00 0.00 0.00 2.24
697 709 4.412858 TGACCCAAACCCAACTTTCTACTA 59.587 41.667 0.00 0.00 0.00 1.82
698 710 3.203487 TGACCCAAACCCAACTTTCTACT 59.797 43.478 0.00 0.00 0.00 2.57
699 711 3.558033 TGACCCAAACCCAACTTTCTAC 58.442 45.455 0.00 0.00 0.00 2.59
700 712 3.955524 TGACCCAAACCCAACTTTCTA 57.044 42.857 0.00 0.00 0.00 2.10
701 713 2.838637 TGACCCAAACCCAACTTTCT 57.161 45.000 0.00 0.00 0.00 2.52
702 714 3.230976 AGATGACCCAAACCCAACTTTC 58.769 45.455 0.00 0.00 0.00 2.62
703 715 3.328535 AGATGACCCAAACCCAACTTT 57.671 42.857 0.00 0.00 0.00 2.66
704 716 4.675063 ATAGATGACCCAAACCCAACTT 57.325 40.909 0.00 0.00 0.00 2.66
705 717 4.675063 AATAGATGACCCAAACCCAACT 57.325 40.909 0.00 0.00 0.00 3.16
706 718 5.478407 CAAAATAGATGACCCAAACCCAAC 58.522 41.667 0.00 0.00 0.00 3.77
707 719 4.530161 CCAAAATAGATGACCCAAACCCAA 59.470 41.667 0.00 0.00 0.00 4.12
708 720 4.093011 CCAAAATAGATGACCCAAACCCA 58.907 43.478 0.00 0.00 0.00 4.51
709 721 4.349365 TCCAAAATAGATGACCCAAACCC 58.651 43.478 0.00 0.00 0.00 4.11
710 722 5.621329 CGTTCCAAAATAGATGACCCAAACC 60.621 44.000 0.00 0.00 0.00 3.27
711 723 5.399013 CGTTCCAAAATAGATGACCCAAAC 58.601 41.667 0.00 0.00 0.00 2.93
712 724 4.461081 CCGTTCCAAAATAGATGACCCAAA 59.539 41.667 0.00 0.00 0.00 3.28
713 725 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
714 726 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
715 727 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
716 728 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
717 729 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
718 730 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
719 731 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
720 732 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
721 733 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
722 734 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
723 735 6.384886 AGTTATACTCCCTCCGTTCCAAAATA 59.615 38.462 0.00 0.00 0.00 1.40
724 736 5.191124 AGTTATACTCCCTCCGTTCCAAAAT 59.809 40.000 0.00 0.00 0.00 1.82
725 737 4.533311 AGTTATACTCCCTCCGTTCCAAAA 59.467 41.667 0.00 0.00 0.00 2.44
726 738 4.098894 AGTTATACTCCCTCCGTTCCAAA 58.901 43.478 0.00 0.00 0.00 3.28
727 739 3.716431 AGTTATACTCCCTCCGTTCCAA 58.284 45.455 0.00 0.00 0.00 3.53
728 740 3.393426 AGTTATACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
729 741 3.181468 CCAAGTTATACTCCCTCCGTTCC 60.181 52.174 0.00 0.00 0.00 3.62
730 742 3.450096 ACCAAGTTATACTCCCTCCGTTC 59.550 47.826 0.00 0.00 0.00 3.95
731 743 3.197116 CACCAAGTTATACTCCCTCCGTT 59.803 47.826 0.00 0.00 0.00 4.44
732 744 2.764572 CACCAAGTTATACTCCCTCCGT 59.235 50.000 0.00 0.00 0.00 4.69
733 745 2.483188 GCACCAAGTTATACTCCCTCCG 60.483 54.545 0.00 0.00 0.00 4.63
734 746 2.483188 CGCACCAAGTTATACTCCCTCC 60.483 54.545 0.00 0.00 0.00 4.30
735 747 2.167900 ACGCACCAAGTTATACTCCCTC 59.832 50.000 0.00 0.00 0.00 4.30
736 748 2.093658 CACGCACCAAGTTATACTCCCT 60.094 50.000 0.00 0.00 0.00 4.20
737 749 2.277084 CACGCACCAAGTTATACTCCC 58.723 52.381 0.00 0.00 0.00 4.30
738 750 2.928116 GACACGCACCAAGTTATACTCC 59.072 50.000 0.00 0.00 0.00 3.85
739 751 2.597305 CGACACGCACCAAGTTATACTC 59.403 50.000 0.00 0.00 0.00 2.59
740 752 2.602878 CGACACGCACCAAGTTATACT 58.397 47.619 0.00 0.00 0.00 2.12
741 753 1.657094 CCGACACGCACCAAGTTATAC 59.343 52.381 0.00 0.00 0.00 1.47
753 765 0.039798 TTACTGACAGTCCGACACGC 60.040 55.000 12.39 0.00 0.00 5.34
754 766 2.516923 GATTACTGACAGTCCGACACG 58.483 52.381 12.39 0.00 0.00 4.49
760 772 5.730550 TGTAACATGGATTACTGACAGTCC 58.269 41.667 12.39 8.13 36.25 3.85
793 805 9.841880 CGGTGCGTTTATCTATATATATAGCAT 57.158 33.333 20.69 16.89 36.47 3.79
807 824 2.218953 TCTCCATCGGTGCGTTTATC 57.781 50.000 0.00 0.00 0.00 1.75
817 834 1.118356 AGGCCTAGCTTCTCCATCGG 61.118 60.000 1.29 0.00 0.00 4.18
840 857 7.962934 TTGTTTCCTTCAATTATAATTCGCG 57.037 32.000 7.76 0.00 0.00 5.87
871 888 6.546484 AGCATATGGAGCAATATACCAAGTT 58.454 36.000 4.56 0.00 37.24 2.66
884 904 0.445436 GCGCATGTAGCATATGGAGC 59.555 55.000 0.30 0.00 46.13 4.70
901 923 2.768253 TATAGCCCAAGATCCATGCG 57.232 50.000 0.00 0.00 0.00 4.73
906 928 4.083271 GCGTTCATTTATAGCCCAAGATCC 60.083 45.833 0.00 0.00 0.00 3.36
995 1020 0.462581 ATGTACGTGAGCCATGGCAG 60.463 55.000 37.18 25.62 44.88 4.85
1044 1070 2.441164 AGAGATCGTGGAGCGGCT 60.441 61.111 0.00 0.00 41.72 5.52
1047 1073 0.735471 TCAAGAGAGATCGTGGAGCG 59.265 55.000 0.00 0.00 43.01 5.03
1099 1125 4.577246 GCGGAGTAGGAGCGGCAG 62.577 72.222 1.45 0.00 0.00 4.85
1521 1547 2.120718 ACTTGCCGGACCTCCTCT 59.879 61.111 5.05 0.00 0.00 3.69
1535 1561 3.071874 TGGCGATCTTTCCAATCACTT 57.928 42.857 0.00 0.00 0.00 3.16
1590 1616 1.883732 GTACGAGTGCAGGAGCTCA 59.116 57.895 17.19 0.00 42.74 4.26
1680 1706 0.109086 CGTTGATGTCGGTGAGCTCT 60.109 55.000 16.19 0.00 0.00 4.09
1992 2018 9.717942 AGTAGATATGAAATAGAGATGGCAAAC 57.282 33.333 0.00 0.00 28.50 2.93
2204 2231 2.026301 GGAGATCGTCTTCGGCGG 59.974 66.667 7.21 0.00 37.69 6.13
2452 2479 5.774690 AGTAATGGAACTCATTTGGCTTCAA 59.225 36.000 0.00 0.00 43.04 2.69
2788 2815 4.449068 CGCATTACAATGATGTAGAGGTCC 59.551 45.833 6.13 0.00 42.72 4.46
2855 2882 8.397906 GTGCTGATTACTTAGATAACAAATGCA 58.602 33.333 0.00 0.00 0.00 3.96
2889 2916 7.044181 CCTAAGTCATCAACTCTGATTGCTTA 58.956 38.462 0.00 0.00 40.49 3.09
2900 2927 9.436957 CAAGTATTGTTACCTAAGTCATCAACT 57.563 33.333 0.00 0.00 42.34 3.16
2999 3026 1.374252 CGAGTGCCCGTGCTTTAGT 60.374 57.895 0.00 0.00 38.71 2.24
3049 3076 2.346766 TGGTGAGATGTGCTTGTTGT 57.653 45.000 0.00 0.00 0.00 3.32
3065 3092 3.426615 TCCGCAATATCCTTTGTTTGGT 58.573 40.909 0.00 0.00 0.00 3.67
3066 3093 3.694072 TCTCCGCAATATCCTTTGTTTGG 59.306 43.478 0.00 0.00 0.00 3.28
3073 3100 8.157476 ACAAATATTACTCTCCGCAATATCCTT 58.843 33.333 0.00 0.00 0.00 3.36
3084 3111 7.610305 TGACCCTTTTGACAAATATTACTCTCC 59.390 37.037 0.50 0.00 0.00 3.71
3092 3119 6.239289 CCAAGTGTGACCCTTTTGACAAATAT 60.239 38.462 0.50 0.00 0.00 1.28
3099 3126 1.341482 TGCCAAGTGTGACCCTTTTGA 60.341 47.619 0.00 0.00 0.00 2.69
3151 3180 2.288518 ACGTGGCAAAAGTTTGTTGTGT 60.289 40.909 5.71 0.00 40.24 3.72
3273 3310 0.034059 CAGGTCCTTCTGCTTGTCGT 59.966 55.000 0.00 0.00 0.00 4.34
3306 3346 3.491792 GGAGCTTACTGCATCTGGACTAC 60.492 52.174 0.00 0.00 45.94 2.73
3327 3367 1.137086 CAGGAGTGTAATGAGGACCGG 59.863 57.143 0.00 0.00 0.00 5.28
3358 3398 6.598457 CAGGTGAAGATTCAAAGTGATGATCT 59.402 38.462 0.00 0.00 39.21 2.75
3361 3401 5.624159 ACAGGTGAAGATTCAAAGTGATGA 58.376 37.500 0.00 0.00 39.21 2.92
3406 3446 6.351711 CATCATTAGGAAGATGGTCTGTCAA 58.648 40.000 0.00 0.00 38.33 3.18
3466 3506 9.358872 GTGAAGATTAGGAAAATGGCTAAAAAG 57.641 33.333 0.00 0.00 0.00 2.27
3478 3560 4.575885 CGGAACAGGTGAAGATTAGGAAA 58.424 43.478 0.00 0.00 0.00 3.13
3479 3561 3.618997 GCGGAACAGGTGAAGATTAGGAA 60.619 47.826 0.00 0.00 0.00 3.36
3480 3562 2.093658 GCGGAACAGGTGAAGATTAGGA 60.094 50.000 0.00 0.00 0.00 2.94
3481 3563 2.093447 AGCGGAACAGGTGAAGATTAGG 60.093 50.000 0.00 0.00 0.00 2.69
3482 3564 3.252974 AGCGGAACAGGTGAAGATTAG 57.747 47.619 0.00 0.00 0.00 1.73
3483 3565 3.244422 ACAAGCGGAACAGGTGAAGATTA 60.244 43.478 0.00 0.00 0.00 1.75
3484 3566 2.154462 CAAGCGGAACAGGTGAAGATT 58.846 47.619 0.00 0.00 0.00 2.40
3485 3567 1.072331 ACAAGCGGAACAGGTGAAGAT 59.928 47.619 0.00 0.00 0.00 2.40
3486 3568 0.468226 ACAAGCGGAACAGGTGAAGA 59.532 50.000 0.00 0.00 0.00 2.87
3487 3569 2.163818 TACAAGCGGAACAGGTGAAG 57.836 50.000 0.00 0.00 0.00 3.02
3488 3570 2.614983 GTTTACAAGCGGAACAGGTGAA 59.385 45.455 0.00 0.00 0.00 3.18
3489 3571 2.215196 GTTTACAAGCGGAACAGGTGA 58.785 47.619 0.00 0.00 0.00 4.02
3490 3572 1.265905 GGTTTACAAGCGGAACAGGTG 59.734 52.381 0.00 0.00 0.00 4.00
3491 3573 1.142262 AGGTTTACAAGCGGAACAGGT 59.858 47.619 0.00 0.00 0.00 4.00
3492 3574 1.892209 AGGTTTACAAGCGGAACAGG 58.108 50.000 0.00 0.00 0.00 4.00
3493 3575 3.982576 AAAGGTTTACAAGCGGAACAG 57.017 42.857 0.00 0.00 0.00 3.16
3494 3576 4.722361 AAAAAGGTTTACAAGCGGAACA 57.278 36.364 0.00 0.00 0.00 3.18
3495 3577 4.678287 GCTAAAAAGGTTTACAAGCGGAAC 59.322 41.667 0.00 0.00 0.00 3.62
3496 3578 4.261698 GGCTAAAAAGGTTTACAAGCGGAA 60.262 41.667 0.00 0.00 0.00 4.30
3497 3579 3.253921 GGCTAAAAAGGTTTACAAGCGGA 59.746 43.478 0.00 0.00 0.00 5.54
3498 3580 3.004944 TGGCTAAAAAGGTTTACAAGCGG 59.995 43.478 0.00 0.00 0.00 5.52
3499 3581 4.231718 TGGCTAAAAAGGTTTACAAGCG 57.768 40.909 0.00 0.00 0.00 4.68
3500 3582 7.307751 GGAAAATGGCTAAAAAGGTTTACAAGC 60.308 37.037 0.00 0.00 0.00 4.01
3501 3583 7.931407 AGGAAAATGGCTAAAAAGGTTTACAAG 59.069 33.333 0.00 0.00 0.00 3.16
3502 3584 7.797062 AGGAAAATGGCTAAAAAGGTTTACAA 58.203 30.769 0.00 0.00 0.00 2.41
3503 3585 7.368198 AGGAAAATGGCTAAAAAGGTTTACA 57.632 32.000 0.00 0.00 0.00 2.41
3504 3586 9.938280 ATTAGGAAAATGGCTAAAAAGGTTTAC 57.062 29.630 0.00 0.00 0.00 2.01
3506 3588 8.880244 AGATTAGGAAAATGGCTAAAAAGGTTT 58.120 29.630 0.00 0.00 0.00 3.27
3507 3589 8.435931 AGATTAGGAAAATGGCTAAAAAGGTT 57.564 30.769 0.00 0.00 0.00 3.50
3508 3590 8.435931 AAGATTAGGAAAATGGCTAAAAAGGT 57.564 30.769 0.00 0.00 0.00 3.50
3509 3591 8.531146 TGAAGATTAGGAAAATGGCTAAAAAGG 58.469 33.333 0.00 0.00 0.00 3.11
3510 3592 9.358872 GTGAAGATTAGGAAAATGGCTAAAAAG 57.641 33.333 0.00 0.00 0.00 2.27
3511 3593 9.088987 AGTGAAGATTAGGAAAATGGCTAAAAA 57.911 29.630 0.00 0.00 0.00 1.94
3512 3594 8.650143 AGTGAAGATTAGGAAAATGGCTAAAA 57.350 30.769 0.00 0.00 0.00 1.52
3513 3595 8.522830 CAAGTGAAGATTAGGAAAATGGCTAAA 58.477 33.333 0.00 0.00 0.00 1.85
3514 3596 7.669722 ACAAGTGAAGATTAGGAAAATGGCTAA 59.330 33.333 0.00 0.00 0.00 3.09
3515 3597 7.175104 ACAAGTGAAGATTAGGAAAATGGCTA 58.825 34.615 0.00 0.00 0.00 3.93
3516 3598 6.012745 ACAAGTGAAGATTAGGAAAATGGCT 58.987 36.000 0.00 0.00 0.00 4.75
3517 3599 6.272822 ACAAGTGAAGATTAGGAAAATGGC 57.727 37.500 0.00 0.00 0.00 4.40
3518 3600 7.315890 GGAACAAGTGAAGATTAGGAAAATGG 58.684 38.462 0.00 0.00 0.00 3.16
3519 3601 7.023575 CGGAACAAGTGAAGATTAGGAAAATG 58.976 38.462 0.00 0.00 0.00 2.32
3520 3602 6.349363 GCGGAACAAGTGAAGATTAGGAAAAT 60.349 38.462 0.00 0.00 0.00 1.82
3521 3603 5.048991 GCGGAACAAGTGAAGATTAGGAAAA 60.049 40.000 0.00 0.00 0.00 2.29
3522 3604 4.454504 GCGGAACAAGTGAAGATTAGGAAA 59.545 41.667 0.00 0.00 0.00 3.13
3556 3638 7.673926 AGGTGAAGATTAGGAAAATGGCTAAAA 59.326 33.333 0.00 0.00 0.00 1.52
3557 3639 7.122650 CAGGTGAAGATTAGGAAAATGGCTAAA 59.877 37.037 0.00 0.00 0.00 1.85
3558 3640 6.603201 CAGGTGAAGATTAGGAAAATGGCTAA 59.397 38.462 0.00 0.00 0.00 3.09
3559 3641 6.122277 CAGGTGAAGATTAGGAAAATGGCTA 58.878 40.000 0.00 0.00 0.00 3.93
3560 3642 4.952335 CAGGTGAAGATTAGGAAAATGGCT 59.048 41.667 0.00 0.00 0.00 4.75
3561 3643 4.706962 ACAGGTGAAGATTAGGAAAATGGC 59.293 41.667 0.00 0.00 0.00 4.40
3562 3644 6.127619 GGAACAGGTGAAGATTAGGAAAATGG 60.128 42.308 0.00 0.00 0.00 3.16
3563 3645 6.403636 CGGAACAGGTGAAGATTAGGAAAATG 60.404 42.308 0.00 0.00 0.00 2.32
3564 3646 5.648092 CGGAACAGGTGAAGATTAGGAAAAT 59.352 40.000 0.00 0.00 0.00 1.82
3565 3647 5.001232 CGGAACAGGTGAAGATTAGGAAAA 58.999 41.667 0.00 0.00 0.00 2.29
3566 3648 4.575885 CGGAACAGGTGAAGATTAGGAAA 58.424 43.478 0.00 0.00 0.00 3.13
3567 3649 3.618997 GCGGAACAGGTGAAGATTAGGAA 60.619 47.826 0.00 0.00 0.00 3.36
3568 3650 2.093658 GCGGAACAGGTGAAGATTAGGA 60.094 50.000 0.00 0.00 0.00 2.94
3569 3651 2.093447 AGCGGAACAGGTGAAGATTAGG 60.093 50.000 0.00 0.00 0.00 2.69
3570 3652 3.252974 AGCGGAACAGGTGAAGATTAG 57.747 47.619 0.00 0.00 0.00 1.73
3571 3653 3.244422 ACAAGCGGAACAGGTGAAGATTA 60.244 43.478 0.00 0.00 0.00 1.75
3572 3654 2.154462 CAAGCGGAACAGGTGAAGATT 58.846 47.619 0.00 0.00 0.00 2.40
3573 3655 1.072331 ACAAGCGGAACAGGTGAAGAT 59.928 47.619 0.00 0.00 0.00 2.40
3574 3656 0.468226 ACAAGCGGAACAGGTGAAGA 59.532 50.000 0.00 0.00 0.00 2.87
3575 3657 2.163818 TACAAGCGGAACAGGTGAAG 57.836 50.000 0.00 0.00 0.00 3.02
3576 3658 2.614983 GTTTACAAGCGGAACAGGTGAA 59.385 45.455 0.00 0.00 0.00 3.18
3577 3659 2.215196 GTTTACAAGCGGAACAGGTGA 58.785 47.619 0.00 0.00 0.00 4.02
3578 3660 1.265905 GGTTTACAAGCGGAACAGGTG 59.734 52.381 0.00 0.00 0.00 4.00
3579 3661 1.142262 AGGTTTACAAGCGGAACAGGT 59.858 47.619 0.00 0.00 0.00 4.00
3580 3662 1.892209 AGGTTTACAAGCGGAACAGG 58.108 50.000 0.00 0.00 0.00 4.00
3581 3663 3.660865 ACTAGGTTTACAAGCGGAACAG 58.339 45.455 0.00 0.00 0.00 3.16
3582 3664 3.322828 AGACTAGGTTTACAAGCGGAACA 59.677 43.478 0.00 0.00 0.00 3.18
3583 3665 3.922910 AGACTAGGTTTACAAGCGGAAC 58.077 45.455 0.00 0.00 0.00 3.62
3584 3666 3.830755 AGAGACTAGGTTTACAAGCGGAA 59.169 43.478 0.00 0.00 0.00 4.30
3585 3667 3.192844 CAGAGACTAGGTTTACAAGCGGA 59.807 47.826 0.00 0.00 0.00 5.54
3586 3668 3.512680 CAGAGACTAGGTTTACAAGCGG 58.487 50.000 0.00 0.00 0.00 5.52
3587 3669 3.512680 CCAGAGACTAGGTTTACAAGCG 58.487 50.000 0.00 0.00 0.00 4.68
3588 3670 3.261137 ACCCAGAGACTAGGTTTACAAGC 59.739 47.826 0.00 0.00 0.00 4.01
3589 3671 4.773149 AGACCCAGAGACTAGGTTTACAAG 59.227 45.833 0.00 0.00 32.81 3.16
3590 3672 4.748701 AGACCCAGAGACTAGGTTTACAA 58.251 43.478 0.00 0.00 32.81 2.41
3591 3673 4.342359 GAGACCCAGAGACTAGGTTTACA 58.658 47.826 0.00 0.00 32.81 2.41
3592 3674 3.377798 CGAGACCCAGAGACTAGGTTTAC 59.622 52.174 0.00 0.00 32.81 2.01
3593 3675 3.265221 TCGAGACCCAGAGACTAGGTTTA 59.735 47.826 0.00 0.00 32.81 2.01
3594 3676 2.041350 TCGAGACCCAGAGACTAGGTTT 59.959 50.000 0.00 0.00 32.81 3.27
3595 3677 1.634459 TCGAGACCCAGAGACTAGGTT 59.366 52.381 0.00 0.00 32.81 3.50
3596 3678 1.287217 TCGAGACCCAGAGACTAGGT 58.713 55.000 0.00 0.00 36.31 3.08
3597 3679 2.421751 TTCGAGACCCAGAGACTAGG 57.578 55.000 0.00 0.00 0.00 3.02
3598 3680 2.685897 CCTTTCGAGACCCAGAGACTAG 59.314 54.545 0.00 0.00 0.00 2.57
3599 3681 2.620886 CCCTTTCGAGACCCAGAGACTA 60.621 54.545 0.00 0.00 0.00 2.59
3611 3693 1.798813 CCGAACAAGTTCCCTTTCGAG 59.201 52.381 7.32 0.00 34.39 4.04
3616 3698 2.425668 CACAAACCGAACAAGTTCCCTT 59.574 45.455 7.32 0.00 36.27 3.95
3624 3706 3.623960 CACTTCCTACACAAACCGAACAA 59.376 43.478 0.00 0.00 0.00 2.83
3628 3710 1.870580 CGCACTTCCTACACAAACCGA 60.871 52.381 0.00 0.00 0.00 4.69
3638 3720 0.834687 AACAGGACCCGCACTTCCTA 60.835 55.000 0.00 0.00 40.52 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.