Multiple sequence alignment - TraesCS4B01G206900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G206900 chr4B 100.000 8237 0 0 1 8237 440335235 440326999 0.000000e+00 15211.0
1 TraesCS4B01G206900 chr4D 96.576 3329 70 17 4460 7783 356886524 356883235 0.000000e+00 5476.0
2 TraesCS4B01G206900 chr4D 94.205 2295 70 16 701 2953 356889912 356887639 0.000000e+00 3443.0
3 TraesCS4B01G206900 chr4D 97.414 696 16 1 2950 3645 356887212 356886519 0.000000e+00 1184.0
4 TraesCS4B01G206900 chr4D 94.225 329 12 3 7913 8237 356883097 356882772 5.740000e-136 496.0
5 TraesCS4B01G206900 chr4D 85.836 353 12 13 276 601 356894646 356894305 2.850000e-89 340.0
6 TraesCS4B01G206900 chr4D 93.846 65 4 0 7813 7877 356883233 356883169 1.890000e-16 99.0
7 TraesCS4B01G206900 chr4A 91.482 3428 123 62 298 3643 108747710 108751050 0.000000e+00 4556.0
8 TraesCS4B01G206900 chr4A 96.234 2629 68 10 5161 7782 108751827 108754431 0.000000e+00 4277.0
9 TraesCS4B01G206900 chr4A 93.172 454 24 4 4460 4910 108751047 108751496 0.000000e+00 660.0
10 TraesCS4B01G206900 chr4A 92.470 332 16 3 7913 8236 108754570 108754900 4.500000e-127 466.0
11 TraesCS4B01G206900 chr4A 83.737 289 24 9 1 267 108747261 108747548 1.370000e-62 252.0
12 TraesCS4B01G206900 chr4A 96.377 138 5 0 5039 5176 108751495 108751632 2.310000e-55 228.0
13 TraesCS4B01G206900 chr4A 79.130 115 19 4 3635 3746 523349757 523349869 3.190000e-09 75.0
14 TraesCS4B01G206900 chr3A 97.570 823 17 3 3645 4465 741658036 741658857 0.000000e+00 1406.0
15 TraesCS4B01G206900 chr3A 87.879 264 26 5 3650 3909 731215862 731215601 1.040000e-78 305.0
16 TraesCS4B01G206900 chr3A 86.611 239 27 4 3892 4126 731213791 731213554 8.200000e-65 259.0
17 TraesCS4B01G206900 chr3A 84.211 133 21 0 1 133 111726972 111726840 6.710000e-26 130.0
18 TraesCS4B01G206900 chr5B 97.333 825 17 4 3643 4465 693678663 693679484 0.000000e+00 1397.0
19 TraesCS4B01G206900 chr5B 81.442 846 92 43 3645 4465 13615034 13614229 4.190000e-177 632.0
20 TraesCS4B01G206900 chr5B 80.974 862 89 42 3645 4469 126252175 126251352 1.520000e-171 614.0
21 TraesCS4B01G206900 chr5B 80.992 847 94 44 3645 4465 13647769 13646964 1.970000e-170 610.0
22 TraesCS4B01G206900 chr5B 80.070 863 93 48 3645 4468 388804350 388803528 1.200000e-157 568.0
23 TraesCS4B01G206900 chr5B 80.899 801 82 45 3696 4465 23333401 23334161 4.320000e-157 566.0
24 TraesCS4B01G206900 chr5B 81.879 149 25 2 31 177 374438137 374438285 3.120000e-24 124.0
25 TraesCS4B01G206900 chr1B 81.628 860 86 41 3645 4465 583851153 583851979 0.000000e+00 647.0
26 TraesCS4B01G206900 chr1B 84.444 90 9 5 4384 4471 165874599 165874685 5.300000e-12 84.2
27 TraesCS4B01G206900 chr1B 81.609 87 15 1 4384 4469 684330233 684330319 4.120000e-08 71.3
28 TraesCS4B01G206900 chr1B 81.609 87 15 1 4384 4469 684544200 684544114 4.120000e-08 71.3
29 TraesCS4B01G206900 chr7B 81.360 853 92 44 3645 4469 594051711 594050898 4.190000e-177 632.0
30 TraesCS4B01G206900 chr3B 81.053 855 92 45 3643 4469 139473074 139472262 1.170000e-172 617.0
31 TraesCS4B01G206900 chr3B 85.542 498 47 20 3645 4130 67068496 67068012 1.600000e-136 497.0
32 TraesCS4B01G206900 chr3B 81.366 161 28 2 18 177 150639197 150639356 6.710000e-26 130.0
33 TraesCS4B01G206900 chr3B 77.206 136 26 5 44 177 581484344 581484476 3.190000e-09 75.0
34 TraesCS4B01G206900 chr3B 88.525 61 4 3 163 222 536050396 536050338 4.120000e-08 71.3
35 TraesCS4B01G206900 chr7A 80.384 469 57 24 4019 4469 57801403 57800952 2.870000e-84 324.0
36 TraesCS4B01G206900 chr7A 80.645 465 46 21 4019 4465 665759638 665759200 3.710000e-83 320.0
37 TraesCS4B01G206900 chr7A 82.143 84 14 1 4385 4467 370731338 370731421 4.120000e-08 71.3
38 TraesCS4B01G206900 chr7A 93.023 43 3 0 186 228 253808182 253808140 6.900000e-06 63.9
39 TraesCS4B01G206900 chr6B 82.584 178 29 2 1 177 621051163 621051339 1.110000e-33 156.0
40 TraesCS4B01G206900 chr3D 80.791 177 30 4 1 175 608567703 608567529 1.440000e-27 135.0
41 TraesCS4B01G206900 chr3D 80.226 177 26 4 1 177 539244685 539244852 3.120000e-24 124.0
42 TraesCS4B01G206900 chr5A 80.347 173 34 0 52 224 419357599 419357771 1.870000e-26 132.0
43 TraesCS4B01G206900 chr2D 82.090 134 22 2 87 219 542748475 542748607 6.760000e-21 113.0
44 TraesCS4B01G206900 chr2B 81.609 87 15 1 4384 4469 177585729 177585643 4.120000e-08 71.3
45 TraesCS4B01G206900 chr7D 87.273 55 7 0 169 223 4736867 4736921 6.900000e-06 63.9
46 TraesCS4B01G206900 chr6A 91.304 46 4 0 183 228 52472829 52472784 6.900000e-06 63.9
47 TraesCS4B01G206900 chr5D 85.965 57 5 3 164 219 402948666 402948720 3.210000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G206900 chr4B 440326999 440335235 8236 True 15211.000000 15211 100.000000 1 8237 1 chr4B.!!$R1 8236
1 TraesCS4B01G206900 chr4D 356882772 356889912 7140 True 2139.600000 5476 95.253200 701 8237 5 chr4D.!!$R2 7536
2 TraesCS4B01G206900 chr4A 108747261 108754900 7639 False 1739.833333 4556 92.245333 1 8236 6 chr4A.!!$F2 8235
3 TraesCS4B01G206900 chr3A 741658036 741658857 821 False 1406.000000 1406 97.570000 3645 4465 1 chr3A.!!$F1 820
4 TraesCS4B01G206900 chr3A 731213554 731215862 2308 True 282.000000 305 87.245000 3650 4126 2 chr3A.!!$R2 476
5 TraesCS4B01G206900 chr5B 693678663 693679484 821 False 1397.000000 1397 97.333000 3643 4465 1 chr5B.!!$F3 822
6 TraesCS4B01G206900 chr5B 13614229 13615034 805 True 632.000000 632 81.442000 3645 4465 1 chr5B.!!$R1 820
7 TraesCS4B01G206900 chr5B 126251352 126252175 823 True 614.000000 614 80.974000 3645 4469 1 chr5B.!!$R3 824
8 TraesCS4B01G206900 chr5B 13646964 13647769 805 True 610.000000 610 80.992000 3645 4465 1 chr5B.!!$R2 820
9 TraesCS4B01G206900 chr5B 388803528 388804350 822 True 568.000000 568 80.070000 3645 4468 1 chr5B.!!$R4 823
10 TraesCS4B01G206900 chr5B 23333401 23334161 760 False 566.000000 566 80.899000 3696 4465 1 chr5B.!!$F1 769
11 TraesCS4B01G206900 chr1B 583851153 583851979 826 False 647.000000 647 81.628000 3645 4465 1 chr1B.!!$F2 820
12 TraesCS4B01G206900 chr7B 594050898 594051711 813 True 632.000000 632 81.360000 3645 4469 1 chr7B.!!$R1 824
13 TraesCS4B01G206900 chr3B 139472262 139473074 812 True 617.000000 617 81.053000 3643 4469 1 chr3B.!!$R2 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 802 0.036010 CCCTTGTTGAGCATCCGTCT 60.036 55.000 0.00 0.0 0.00 4.18 F
1446 1700 0.491823 TGGAGGAGGTCAAGGAAGGA 59.508 55.000 0.00 0.0 0.00 3.36 F
2475 2735 0.598562 GGACGAAGCACAGAGACTGA 59.401 55.000 5.76 0.0 35.18 3.41 F
2500 2760 1.076549 GGGGTGGTTGGAGAATGCA 59.923 57.895 0.00 0.0 30.91 3.96 F
2711 2972 1.304713 GTGGGGAGGGTGTACTCGA 60.305 63.158 0.00 0.0 38.39 4.04 F
2864 3127 1.898574 GTGGCTCAACCTGTGGGTG 60.899 63.158 0.00 0.0 46.67 4.61 F
3591 4307 2.395619 AGGTGTTTCGGAGGGTATAGG 58.604 52.381 0.00 0.0 0.00 2.57 F
4643 7267 3.614399 GGATATTGCCCAGTCCTCG 57.386 57.895 0.00 0.0 0.00 4.63 F
4941 7695 0.038251 TGAAGGCTACGTGCTGTCTG 60.038 55.000 0.00 0.0 42.39 3.51 F
4942 7696 0.243907 GAAGGCTACGTGCTGTCTGA 59.756 55.000 0.00 0.0 42.39 3.27 F
4952 7706 0.594602 TGCTGTCTGAATTGCACTGC 59.405 50.000 0.00 0.0 36.00 4.40 F
4953 7707 0.594602 GCTGTCTGAATTGCACTGCA 59.405 50.000 0.00 0.0 35.64 4.41 F
6212 9178 0.601311 CGCCCTGCTCAGCCTAATAC 60.601 60.000 0.00 0.0 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 2300 0.390603 CAATCCTGCGGTTACACGGA 60.391 55.000 0.00 0.00 0.00 4.69 R
3339 4035 1.078214 CACCGCCATGTCCACATCT 60.078 57.895 0.00 0.00 33.61 2.90 R
4150 6736 0.035317 TCTCAGGAAAGCGTGCATGT 59.965 50.000 7.93 0.00 0.00 3.21 R
4183 6769 5.069119 ACATGTTCACAAGAGACAGTACTGA 59.931 40.000 29.30 2.08 0.00 3.41 R
4616 7240 2.957402 GGGCAATATCCCAGTGATCA 57.043 50.000 0.00 0.00 45.82 2.92 R
4756 7383 0.605589 ACTACGCCTTTTCACCTGCC 60.606 55.000 0.00 0.00 0.00 4.85 R
4930 7684 0.588252 GTGCAATTCAGACAGCACGT 59.412 50.000 0.00 0.00 46.35 4.49 R
6218 9184 0.324943 AGAGGCGGTACATGTTGCTT 59.675 50.000 2.30 2.38 0.00 3.91 R
6907 9873 1.538047 GCAGCATTCTCCTTGTTCCA 58.462 50.000 0.00 0.00 0.00 3.53 R
7034 10000 2.572104 GCTTTTCTCTTCCCCCTGTCTA 59.428 50.000 0.00 0.00 0.00 2.59 R
7134 10100 0.474184 ACAGGGTTTGGGACTGAGTG 59.526 55.000 0.00 0.00 36.17 3.51 R
7135 10101 0.765510 GACAGGGTTTGGGACTGAGT 59.234 55.000 0.00 0.00 36.17 3.41 R
7881 10850 0.251742 TCAGGTTGGGAAATGCCAGG 60.252 55.000 0.00 0.00 38.95 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.072116 CGCCGTGTTTGCATGAATGG 61.072 55.000 0.00 0.00 33.58 3.16
87 88 5.418840 ACTTGAATGAAATCTGGCCGTATTT 59.581 36.000 13.38 13.38 0.00 1.40
98 99 3.733337 TGGCCGTATTTGCACAAATTTT 58.267 36.364 13.40 0.00 40.99 1.82
139 140 7.543947 TGATAGTTGAAATGTATGCAGACAG 57.456 36.000 20.16 0.00 31.51 3.51
152 153 2.224597 TGCAGACAGTGTTGGATGACAT 60.225 45.455 0.00 0.00 0.00 3.06
153 154 2.417933 GCAGACAGTGTTGGATGACATC 59.582 50.000 6.91 6.91 0.00 3.06
165 166 1.056125 ATGACATCCTCCCGCATCCA 61.056 55.000 0.00 0.00 0.00 3.41
194 213 4.156739 GCGGACAGAATCAGGAGAAAATTT 59.843 41.667 0.00 0.00 0.00 1.82
199 218 3.445096 AGAATCAGGAGAAAATTTGCGGG 59.555 43.478 0.00 0.00 0.00 6.13
221 240 1.017387 GCCGTTGAAGATGCCCTTAG 58.983 55.000 0.00 0.00 34.68 2.18
222 241 1.668419 CCGTTGAAGATGCCCTTAGG 58.332 55.000 0.00 0.00 34.68 2.69
234 253 1.632740 CCTTAGGACCTAGCCCCCT 59.367 63.158 0.48 0.00 0.00 4.79
241 260 2.272230 GACCTAGCCCCCTTGCCTTC 62.272 65.000 0.00 0.00 0.00 3.46
243 262 0.694444 CCTAGCCCCCTTGCCTTCTA 60.694 60.000 0.00 0.00 0.00 2.10
248 267 1.566298 CCCCCTTGCCTTCTAGCTGT 61.566 60.000 0.00 0.00 0.00 4.40
253 272 3.055094 CCCTTGCCTTCTAGCTGTTTAGA 60.055 47.826 0.00 0.00 0.00 2.10
254 273 4.565652 CCCTTGCCTTCTAGCTGTTTAGAA 60.566 45.833 0.00 0.00 37.33 2.10
255 274 5.003804 CCTTGCCTTCTAGCTGTTTAGAAA 58.996 41.667 0.00 0.00 38.74 2.52
256 275 5.649831 CCTTGCCTTCTAGCTGTTTAGAAAT 59.350 40.000 0.00 0.00 38.74 2.17
257 276 6.183360 CCTTGCCTTCTAGCTGTTTAGAAATC 60.183 42.308 0.00 0.00 38.74 2.17
258 277 5.804639 TGCCTTCTAGCTGTTTAGAAATCA 58.195 37.500 0.00 0.00 38.74 2.57
259 278 6.418101 TGCCTTCTAGCTGTTTAGAAATCAT 58.582 36.000 0.00 0.00 38.74 2.45
260 279 6.886459 TGCCTTCTAGCTGTTTAGAAATCATT 59.114 34.615 0.00 0.00 38.74 2.57
261 280 7.394359 TGCCTTCTAGCTGTTTAGAAATCATTT 59.606 33.333 0.00 0.00 38.74 2.32
262 281 7.699812 GCCTTCTAGCTGTTTAGAAATCATTTG 59.300 37.037 0.00 0.00 38.74 2.32
263 282 8.734386 CCTTCTAGCTGTTTAGAAATCATTTGT 58.266 33.333 0.00 0.00 38.74 2.83
336 515 7.224362 TGCATTTGTCATTTAGTTTGACCAAAG 59.776 33.333 1.73 0.00 42.25 2.77
361 540 3.557577 TGTGCTTCAACGATCCAATTG 57.442 42.857 0.00 0.00 0.00 2.32
406 605 6.415573 AGTCCTTCGTTAGGCTTTTATGATT 58.584 36.000 0.00 0.00 44.37 2.57
407 606 6.884836 AGTCCTTCGTTAGGCTTTTATGATTT 59.115 34.615 0.00 0.00 44.37 2.17
408 607 8.044908 AGTCCTTCGTTAGGCTTTTATGATTTA 58.955 33.333 0.00 0.00 44.37 1.40
475 674 4.530161 AGCCAAGAAAGAGAGAGAAGCTTA 59.470 41.667 0.00 0.00 0.00 3.09
480 679 5.478407 AGAAAGAGAGAGAAGCTTACTTGC 58.522 41.667 0.00 0.00 35.82 4.01
504 703 0.323087 TGCACGCTCCTGTACCTAGA 60.323 55.000 0.00 0.00 0.00 2.43
505 704 1.033574 GCACGCTCCTGTACCTAGAT 58.966 55.000 0.00 0.00 0.00 1.98
506 705 2.228059 GCACGCTCCTGTACCTAGATA 58.772 52.381 0.00 0.00 0.00 1.98
507 706 2.820787 GCACGCTCCTGTACCTAGATAT 59.179 50.000 0.00 0.00 0.00 1.63
508 707 3.366476 GCACGCTCCTGTACCTAGATATG 60.366 52.174 0.00 0.00 0.00 1.78
548 750 2.069273 ACTTTCTGGCGAGACATTTCG 58.931 47.619 0.00 0.00 43.23 3.46
556 759 2.223044 GGCGAGACATTTCGAATTGTCC 60.223 50.000 33.35 26.31 42.56 4.02
571 774 2.829003 TCCTACTCCAGAGCGCGG 60.829 66.667 8.83 0.00 0.00 6.46
587 792 1.460273 GCGGCCTTTTCCCTTGTTGA 61.460 55.000 0.00 0.00 0.00 3.18
596 801 0.036388 TCCCTTGTTGAGCATCCGTC 60.036 55.000 0.00 0.00 0.00 4.79
597 802 0.036010 CCCTTGTTGAGCATCCGTCT 60.036 55.000 0.00 0.00 0.00 4.18
598 803 1.611673 CCCTTGTTGAGCATCCGTCTT 60.612 52.381 0.00 0.00 0.00 3.01
599 804 2.354704 CCCTTGTTGAGCATCCGTCTTA 60.355 50.000 0.00 0.00 0.00 2.10
600 805 3.535561 CCTTGTTGAGCATCCGTCTTAT 58.464 45.455 0.00 0.00 0.00 1.73
602 807 4.396166 CCTTGTTGAGCATCCGTCTTATTT 59.604 41.667 0.00 0.00 0.00 1.40
603 808 5.106157 CCTTGTTGAGCATCCGTCTTATTTT 60.106 40.000 0.00 0.00 0.00 1.82
604 809 5.957842 TGTTGAGCATCCGTCTTATTTTT 57.042 34.783 0.00 0.00 0.00 1.94
621 826 2.088950 TTTTTCCCGTCTGATCCGAC 57.911 50.000 7.18 7.18 0.00 4.79
641 846 1.574702 GGCTCCAAACGAGTTTCGGG 61.575 60.000 13.27 7.61 45.59 5.14
681 890 2.885644 CTCCATCGTTCCCACGCG 60.886 66.667 3.53 3.53 46.70 6.01
823 1034 1.923899 TGACGCGGCGATAATAAACA 58.076 45.000 30.94 11.73 0.00 2.83
824 1035 2.269172 TGACGCGGCGATAATAAACAA 58.731 42.857 30.94 0.00 0.00 2.83
825 1036 2.283086 TGACGCGGCGATAATAAACAAG 59.717 45.455 30.94 0.00 0.00 3.16
826 1037 2.536803 GACGCGGCGATAATAAACAAGA 59.463 45.455 30.94 0.00 0.00 3.02
1206 1427 2.045536 GAGGAGGCCAGCACCAAG 60.046 66.667 5.01 0.00 0.00 3.61
1392 1646 1.377725 CCGGAGGCAGTTCTGCAAT 60.378 57.895 23.23 12.95 46.14 3.56
1443 1697 2.342406 TGATGGAGGAGGTCAAGGAA 57.658 50.000 0.00 0.00 0.00 3.36
1446 1700 0.491823 TGGAGGAGGTCAAGGAAGGA 59.508 55.000 0.00 0.00 0.00 3.36
1561 1815 2.501723 GGTAGCAAGATCTTCCTGGTGA 59.498 50.000 9.29 0.00 0.00 4.02
1662 1916 5.122512 TGCGCTAGATAAGGTTGTATCTC 57.877 43.478 9.73 0.00 40.54 2.75
1670 1924 7.118496 AGATAAGGTTGTATCTCTGGAGTTG 57.882 40.000 0.00 0.00 36.29 3.16
1750 2004 5.873732 AGAATTTCTCGCTAATCACTTTGC 58.126 37.500 0.00 0.00 0.00 3.68
1759 2013 5.180304 TCGCTAATCACTTTGCAACATGTTA 59.820 36.000 11.53 0.00 33.42 2.41
2046 2300 8.880991 TGGAAGTTTGAGAGACTAGTAGTAAT 57.119 34.615 1.88 0.00 0.00 1.89
2138 2397 9.632638 ATTCACCACTATTGCTATTTAATCACT 57.367 29.630 0.00 0.00 0.00 3.41
2139 2398 8.437360 TCACCACTATTGCTATTTAATCACTG 57.563 34.615 0.00 0.00 0.00 3.66
2292 2552 7.275779 CGTATCTATATGTCAGTTATTGGTGGC 59.724 40.741 0.00 0.00 0.00 5.01
2394 2654 8.234546 CGCTACCAAAGTTGTGATAAAATTACT 58.765 33.333 0.00 0.00 31.88 2.24
2475 2735 0.598562 GGACGAAGCACAGAGACTGA 59.401 55.000 5.76 0.00 35.18 3.41
2500 2760 1.076549 GGGGTGGTTGGAGAATGCA 59.923 57.895 0.00 0.00 30.91 3.96
2711 2972 1.304713 GTGGGGAGGGTGTACTCGA 60.305 63.158 0.00 0.00 38.39 4.04
2864 3127 1.898574 GTGGCTCAACCTGTGGGTG 60.899 63.158 0.00 0.00 46.67 4.61
3005 3700 5.077441 AGGGCCCAGGACTATTAGTCTATTA 59.923 44.000 27.56 0.00 44.46 0.98
3011 3706 9.976776 CCCAGGACTATTAGTCTATTACTATGA 57.023 37.037 20.36 0.00 44.46 2.15
3172 3867 7.391148 TGGAAGTTTAATATCTGCAAACCTC 57.609 36.000 0.00 0.00 33.58 3.85
3423 4138 9.520515 AATACCTGATAACTCAAAGTTGTTCAT 57.479 29.630 2.65 0.00 39.11 2.57
3470 4185 2.503846 TACGTCTGTGGTCCGGGGAT 62.504 60.000 0.00 0.00 0.00 3.85
3485 4200 3.352648 CGGGGATGTGGTGAATTTAGTT 58.647 45.455 0.00 0.00 0.00 2.24
3591 4307 2.395619 AGGTGTTTCGGAGGGTATAGG 58.604 52.381 0.00 0.00 0.00 2.57
3639 4355 4.240881 ATGGTGCAACTGATGGACTATT 57.759 40.909 2.04 0.00 46.87 1.73
3640 4356 5.372343 ATGGTGCAACTGATGGACTATTA 57.628 39.130 2.04 0.00 46.87 0.98
3641 4357 5.945310 ATGGTGCAACTGATGGACTATTAT 58.055 37.500 2.04 0.00 46.87 1.28
3669 4385 5.371115 AGTAATTTGTACGTGCTTTGCAT 57.629 34.783 4.97 0.00 41.91 3.96
3763 4487 7.537596 TTTTCATAGAAGCTTCAAATGGGAA 57.462 32.000 27.87 22.24 0.00 3.97
4025 6589 6.009589 TCAATCCCATGTCAGCTAAGAAAAA 58.990 36.000 0.00 0.00 0.00 1.94
4150 6736 7.460910 TGGAATATATTGCAATTCTAGGCTCA 58.539 34.615 18.75 4.82 35.12 4.26
4183 6769 6.351456 GCTTTCCTGAGATAGTTCTACTGGTT 60.351 42.308 0.00 0.00 30.30 3.67
4505 7129 4.377897 ACTAGAACTGTTGGTACACTTGC 58.622 43.478 0.00 0.00 39.29 4.01
4643 7267 3.614399 GGATATTGCCCAGTCCTCG 57.386 57.895 0.00 0.00 0.00 4.63
4694 7318 8.962064 TGGAAACACCAGAAGGATCTGAATCG 62.962 46.154 7.39 0.00 45.93 3.34
4713 7340 8.006298 TGAATCGCACTTTAATGGGAATAATT 57.994 30.769 0.57 0.00 43.84 1.40
4764 7391 3.650950 GGGCTCAAGGGCAGGTGA 61.651 66.667 0.00 0.00 42.84 4.02
4785 7412 6.035758 GGTGAAAAGGCGTAGTTAATAGACAG 59.964 42.308 0.00 0.00 0.00 3.51
4910 7664 3.728076 AAACTAGTGTCTCAGTGCGAA 57.272 42.857 0.00 0.00 0.00 4.70
4911 7665 3.728076 AACTAGTGTCTCAGTGCGAAA 57.272 42.857 0.00 0.00 0.00 3.46
4912 7666 3.944055 ACTAGTGTCTCAGTGCGAAAT 57.056 42.857 0.00 0.00 0.00 2.17
4913 7667 5.386958 AACTAGTGTCTCAGTGCGAAATA 57.613 39.130 0.00 0.00 0.00 1.40
4914 7668 5.584253 ACTAGTGTCTCAGTGCGAAATAT 57.416 39.130 0.00 0.00 0.00 1.28
4915 7669 5.967088 ACTAGTGTCTCAGTGCGAAATATT 58.033 37.500 0.00 0.00 0.00 1.28
4916 7670 6.398918 ACTAGTGTCTCAGTGCGAAATATTT 58.601 36.000 0.00 0.00 0.00 1.40
4917 7671 6.874134 ACTAGTGTCTCAGTGCGAAATATTTT 59.126 34.615 1.43 0.00 0.00 1.82
4918 7672 8.033038 ACTAGTGTCTCAGTGCGAAATATTTTA 58.967 33.333 1.43 0.00 0.00 1.52
4919 7673 7.295952 AGTGTCTCAGTGCGAAATATTTTAG 57.704 36.000 1.43 1.53 0.00 1.85
4920 7674 6.313905 AGTGTCTCAGTGCGAAATATTTTAGG 59.686 38.462 1.43 0.00 0.00 2.69
4921 7675 6.092259 GTGTCTCAGTGCGAAATATTTTAGGT 59.908 38.462 1.43 0.00 0.00 3.08
4922 7676 6.653320 TGTCTCAGTGCGAAATATTTTAGGTT 59.347 34.615 1.43 0.00 0.00 3.50
4923 7677 6.961554 GTCTCAGTGCGAAATATTTTAGGTTG 59.038 38.462 1.43 0.28 0.00 3.77
4924 7678 6.876789 TCTCAGTGCGAAATATTTTAGGTTGA 59.123 34.615 1.43 4.31 0.00 3.18
4925 7679 7.389330 TCTCAGTGCGAAATATTTTAGGTTGAA 59.611 33.333 1.43 0.00 0.00 2.69
4926 7680 7.526608 TCAGTGCGAAATATTTTAGGTTGAAG 58.473 34.615 1.43 0.00 0.00 3.02
4927 7681 6.747280 CAGTGCGAAATATTTTAGGTTGAAGG 59.253 38.462 1.43 0.00 0.00 3.46
4928 7682 5.515270 GTGCGAAATATTTTAGGTTGAAGGC 59.485 40.000 1.43 0.00 0.00 4.35
4929 7683 5.417580 TGCGAAATATTTTAGGTTGAAGGCT 59.582 36.000 1.43 0.00 0.00 4.58
4930 7684 6.600032 TGCGAAATATTTTAGGTTGAAGGCTA 59.400 34.615 1.43 0.00 0.00 3.93
4931 7685 6.910972 GCGAAATATTTTAGGTTGAAGGCTAC 59.089 38.462 1.43 0.00 0.00 3.58
4932 7686 7.123830 CGAAATATTTTAGGTTGAAGGCTACG 58.876 38.462 1.43 0.00 0.00 3.51
4933 7687 7.201582 CGAAATATTTTAGGTTGAAGGCTACGT 60.202 37.037 1.43 0.00 0.00 3.57
4934 7688 6.920569 ATATTTTAGGTTGAAGGCTACGTG 57.079 37.500 0.00 0.00 0.00 4.49
4935 7689 2.088950 TTAGGTTGAAGGCTACGTGC 57.911 50.000 0.00 0.00 41.94 5.34
4936 7690 1.263356 TAGGTTGAAGGCTACGTGCT 58.737 50.000 0.00 0.00 42.39 4.40
4937 7691 0.320771 AGGTTGAAGGCTACGTGCTG 60.321 55.000 0.00 0.00 42.39 4.41
4938 7692 0.602905 GGTTGAAGGCTACGTGCTGT 60.603 55.000 0.00 0.00 42.39 4.40
4939 7693 0.790814 GTTGAAGGCTACGTGCTGTC 59.209 55.000 0.00 2.88 42.39 3.51
4940 7694 0.679505 TTGAAGGCTACGTGCTGTCT 59.320 50.000 0.00 0.00 42.39 3.41
4941 7695 0.038251 TGAAGGCTACGTGCTGTCTG 60.038 55.000 0.00 0.00 42.39 3.51
4942 7696 0.243907 GAAGGCTACGTGCTGTCTGA 59.756 55.000 0.00 0.00 42.39 3.27
4943 7697 0.679505 AAGGCTACGTGCTGTCTGAA 59.320 50.000 0.00 0.00 42.39 3.02
4944 7698 0.898320 AGGCTACGTGCTGTCTGAAT 59.102 50.000 0.00 0.00 42.39 2.57
4945 7699 1.276421 AGGCTACGTGCTGTCTGAATT 59.724 47.619 0.00 0.00 42.39 2.17
4946 7700 1.394917 GGCTACGTGCTGTCTGAATTG 59.605 52.381 0.00 0.00 42.39 2.32
4947 7701 1.201965 GCTACGTGCTGTCTGAATTGC 60.202 52.381 0.00 0.00 38.95 3.56
4948 7702 2.068519 CTACGTGCTGTCTGAATTGCA 58.931 47.619 0.00 0.00 0.00 4.08
4952 7706 0.594602 TGCTGTCTGAATTGCACTGC 59.405 50.000 0.00 0.00 36.00 4.40
4953 7707 0.594602 GCTGTCTGAATTGCACTGCA 59.405 50.000 0.00 0.00 35.64 4.41
4954 7708 1.201647 GCTGTCTGAATTGCACTGCAT 59.798 47.619 4.10 0.00 38.76 3.96
4955 7709 2.421073 GCTGTCTGAATTGCACTGCATA 59.579 45.455 4.10 0.00 38.76 3.14
4956 7710 3.487042 GCTGTCTGAATTGCACTGCATAG 60.487 47.826 4.10 2.12 38.76 2.23
4957 7711 3.011818 TGTCTGAATTGCACTGCATAGG 58.988 45.455 4.10 0.00 38.76 2.57
4958 7712 3.273434 GTCTGAATTGCACTGCATAGGA 58.727 45.455 4.10 0.00 38.76 2.94
4959 7713 3.881688 GTCTGAATTGCACTGCATAGGAT 59.118 43.478 4.10 0.00 38.76 3.24
4960 7714 5.059161 GTCTGAATTGCACTGCATAGGATA 58.941 41.667 4.10 0.00 38.76 2.59
4961 7715 5.528690 GTCTGAATTGCACTGCATAGGATAA 59.471 40.000 4.10 0.00 38.76 1.75
4962 7716 5.528690 TCTGAATTGCACTGCATAGGATAAC 59.471 40.000 4.10 0.00 38.76 1.89
4963 7717 5.439721 TGAATTGCACTGCATAGGATAACT 58.560 37.500 4.10 0.00 38.76 2.24
4964 7718 5.887598 TGAATTGCACTGCATAGGATAACTT 59.112 36.000 4.10 0.00 38.76 2.66
4965 7719 6.377996 TGAATTGCACTGCATAGGATAACTTT 59.622 34.615 4.10 0.00 38.76 2.66
4966 7720 7.555914 TGAATTGCACTGCATAGGATAACTTTA 59.444 33.333 4.10 0.00 38.76 1.85
4967 7721 7.880160 ATTGCACTGCATAGGATAACTTTAA 57.120 32.000 4.10 0.00 38.76 1.52
4968 7722 7.695480 TTGCACTGCATAGGATAACTTTAAA 57.305 32.000 4.10 0.00 38.76 1.52
4969 7723 7.695480 TGCACTGCATAGGATAACTTTAAAA 57.305 32.000 0.00 0.00 31.71 1.52
4970 7724 8.292444 TGCACTGCATAGGATAACTTTAAAAT 57.708 30.769 0.00 0.00 31.71 1.82
4971 7725 9.402320 TGCACTGCATAGGATAACTTTAAAATA 57.598 29.630 0.00 0.00 31.71 1.40
4972 7726 9.884465 GCACTGCATAGGATAACTTTAAAATAG 57.116 33.333 0.00 0.00 0.00 1.73
5014 7768 9.961266 TTACGTGATTACATTTGAGAAATAACG 57.039 29.630 0.00 2.98 0.00 3.18
5015 7769 8.246908 ACGTGATTACATTTGAGAAATAACGA 57.753 30.769 10.01 0.00 0.00 3.85
5016 7770 8.166706 ACGTGATTACATTTGAGAAATAACGAC 58.833 33.333 10.01 0.00 0.00 4.34
5017 7771 8.166066 CGTGATTACATTTGAGAAATAACGACA 58.834 33.333 0.00 0.00 0.00 4.35
5018 7772 9.262472 GTGATTACATTTGAGAAATAACGACAC 57.738 33.333 0.00 0.00 0.00 3.67
5019 7773 9.214957 TGATTACATTTGAGAAATAACGACACT 57.785 29.630 0.00 0.00 0.00 3.55
5023 7777 8.547967 ACATTTGAGAAATAACGACACTATGT 57.452 30.769 0.00 0.00 0.00 2.29
5024 7778 8.999431 ACATTTGAGAAATAACGACACTATGTT 58.001 29.630 0.00 0.00 0.00 2.71
5025 7779 9.265938 CATTTGAGAAATAACGACACTATGTTG 57.734 33.333 0.00 0.00 37.76 3.33
5026 7780 6.403333 TGAGAAATAACGACACTATGTTGC 57.597 37.500 0.00 0.00 35.14 4.17
5027 7781 6.163476 TGAGAAATAACGACACTATGTTGCT 58.837 36.000 0.00 0.00 35.14 3.91
5028 7782 6.310467 TGAGAAATAACGACACTATGTTGCTC 59.690 38.462 0.00 0.00 35.14 4.26
5029 7783 6.398918 AGAAATAACGACACTATGTTGCTCT 58.601 36.000 0.00 0.00 35.14 4.09
5030 7784 6.311445 AGAAATAACGACACTATGTTGCTCTG 59.689 38.462 0.00 0.00 35.14 3.35
5031 7785 3.386768 AACGACACTATGTTGCTCTGT 57.613 42.857 0.00 0.00 35.14 3.41
5032 7786 3.386768 ACGACACTATGTTGCTCTGTT 57.613 42.857 0.00 0.00 35.14 3.16
5033 7787 3.318017 ACGACACTATGTTGCTCTGTTC 58.682 45.455 0.00 0.00 35.14 3.18
5034 7788 3.005897 ACGACACTATGTTGCTCTGTTCT 59.994 43.478 0.00 0.00 35.14 3.01
5035 7789 3.366121 CGACACTATGTTGCTCTGTTCTG 59.634 47.826 0.00 0.00 0.00 3.02
5036 7790 4.560128 GACACTATGTTGCTCTGTTCTGA 58.440 43.478 0.00 0.00 0.00 3.27
5037 7791 5.157940 ACACTATGTTGCTCTGTTCTGAT 57.842 39.130 0.00 0.00 0.00 2.90
5038 7792 4.934001 ACACTATGTTGCTCTGTTCTGATG 59.066 41.667 0.00 0.00 0.00 3.07
5039 7793 5.173664 CACTATGTTGCTCTGTTCTGATGA 58.826 41.667 0.00 0.00 0.00 2.92
5072 7826 7.658982 TGATGGTCAATCAAGCACTTCTATATC 59.341 37.037 0.00 0.00 42.49 1.63
5627 8591 9.350357 CTATAATTCAAGCACCAATGATAATGC 57.650 33.333 0.00 0.00 38.39 3.56
5681 8645 4.220693 AGTTGCAGCTTGTCACCATATA 57.779 40.909 0.00 0.00 0.00 0.86
5954 8918 2.553247 GCCAGGTCTCTGCCTAACTTTT 60.553 50.000 0.00 0.00 39.61 2.27
5955 8919 3.307480 GCCAGGTCTCTGCCTAACTTTTA 60.307 47.826 0.00 0.00 39.61 1.52
5957 8921 5.119694 CCAGGTCTCTGCCTAACTTTTATC 58.880 45.833 0.00 0.00 39.61 1.75
6171 9137 1.725641 TAGCTCAATGGTGTGAAGCG 58.274 50.000 0.00 0.00 31.23 4.68
6212 9178 0.601311 CGCCCTGCTCAGCCTAATAC 60.601 60.000 0.00 0.00 0.00 1.89
6217 9183 3.006323 CCCTGCTCAGCCTAATACTACAG 59.994 52.174 0.00 0.00 0.00 2.74
6218 9184 3.891977 CCTGCTCAGCCTAATACTACAGA 59.108 47.826 0.00 0.00 0.00 3.41
6603 9569 2.069273 GTGGATGAGAACAAGGTGACG 58.931 52.381 0.00 0.00 0.00 4.35
6762 9728 5.839063 TGGATTGGTCCCTATACTACTTGAG 59.161 44.000 0.00 0.00 44.41 3.02
7227 10193 3.969976 CTCCTACTTCATCCCATCTTCCA 59.030 47.826 0.00 0.00 0.00 3.53
7244 10210 6.874278 TCTTCCAGAAAGATGAGGTGAATA 57.126 37.500 0.00 0.00 39.12 1.75
7394 10360 4.513519 CGCAGCGTGATTTAGGGA 57.486 55.556 6.65 0.00 0.00 4.20
7395 10361 2.992089 CGCAGCGTGATTTAGGGAT 58.008 52.632 6.65 0.00 0.00 3.85
7396 10362 1.299541 CGCAGCGTGATTTAGGGATT 58.700 50.000 6.65 0.00 0.00 3.01
7397 10363 1.670811 CGCAGCGTGATTTAGGGATTT 59.329 47.619 6.65 0.00 0.00 2.17
7398 10364 2.869801 CGCAGCGTGATTTAGGGATTTA 59.130 45.455 6.65 0.00 0.00 1.40
7399 10365 3.059597 CGCAGCGTGATTTAGGGATTTAG 60.060 47.826 6.65 0.00 0.00 1.85
7400 10366 3.251004 GCAGCGTGATTTAGGGATTTAGG 59.749 47.826 0.00 0.00 0.00 2.69
7401 10367 3.815401 CAGCGTGATTTAGGGATTTAGGG 59.185 47.826 0.00 0.00 0.00 3.53
7583 10549 1.440618 TTTGTGGCTTCCTAGGGTGA 58.559 50.000 9.46 0.00 0.00 4.02
7593 10559 5.768662 GGCTTCCTAGGGTGATAATTTTACC 59.231 44.000 9.46 0.00 0.00 2.85
7613 10582 2.348660 CTGCCTGAGAAAGAGAGCTTG 58.651 52.381 0.00 0.00 33.79 4.01
7651 10620 5.339990 TCAAGTTTTTGTGTTCAGCTAAGC 58.660 37.500 0.00 0.00 35.73 3.09
7676 10645 7.042119 GCTTCTGCTCTGGATATTTTCTAAGAC 60.042 40.741 0.00 0.00 36.03 3.01
7694 10663 2.158842 AGACAATAGCTGGAGCATGGAC 60.159 50.000 0.00 0.00 45.16 4.02
7702 10671 2.354259 CTGGAGCATGGACTGTTCTTC 58.646 52.381 0.00 0.00 35.57 2.87
7703 10672 1.338105 TGGAGCATGGACTGTTCTTCG 60.338 52.381 0.00 0.00 35.57 3.79
7713 10682 2.391879 ACTGTTCTTCGCGTGTAACTC 58.608 47.619 5.77 0.00 31.75 3.01
7731 10700 3.347216 ACTCGAAAGAAATCCATGTGGG 58.653 45.455 0.00 0.00 41.32 4.61
7732 10701 3.244911 ACTCGAAAGAAATCCATGTGGGT 60.245 43.478 0.00 0.00 41.32 4.51
7736 10705 2.220653 AGAAATCCATGTGGGTGTGG 57.779 50.000 0.00 0.00 38.11 4.17
7737 10706 1.185315 GAAATCCATGTGGGTGTGGG 58.815 55.000 0.00 0.00 38.11 4.61
7739 10708 2.091640 AATCCATGTGGGTGTGGGCA 62.092 55.000 0.00 0.00 38.11 5.36
7740 10709 1.877672 ATCCATGTGGGTGTGGGCAT 61.878 55.000 0.00 0.00 38.11 4.40
7741 10710 2.352821 CCATGTGGGTGTGGGCATG 61.353 63.158 0.00 0.00 38.61 4.06
7744 10713 0.899717 ATGTGGGTGTGGGCATGTTC 60.900 55.000 0.00 0.00 0.00 3.18
7745 10714 2.117206 TGGGTGTGGGCATGTTCC 59.883 61.111 0.00 0.00 0.00 3.62
7746 10715 3.061848 GGGTGTGGGCATGTTCCG 61.062 66.667 0.00 0.00 0.00 4.30
7747 10716 2.033448 GGTGTGGGCATGTTCCGA 59.967 61.111 0.00 0.00 0.00 4.55
7748 10717 1.378514 GGTGTGGGCATGTTCCGAT 60.379 57.895 0.00 0.00 0.00 4.18
7749 10718 1.376609 GGTGTGGGCATGTTCCGATC 61.377 60.000 0.00 0.00 0.00 3.69
7750 10719 0.676466 GTGTGGGCATGTTCCGATCA 60.676 55.000 0.00 0.00 0.00 2.92
7768 10737 0.661187 CACTGTCCGCATGTTGTTGC 60.661 55.000 0.00 0.00 39.29 4.17
7772 10741 0.038343 GTCCGCATGTTGTTGCCATT 60.038 50.000 0.00 0.00 39.52 3.16
7773 10742 0.038435 TCCGCATGTTGTTGCCATTG 60.038 50.000 0.00 0.00 39.52 2.82
7776 10745 2.133553 CGCATGTTGTTGCCATTGAAA 58.866 42.857 0.00 0.00 39.52 2.69
7779 10748 4.667161 CGCATGTTGTTGCCATTGAAATTC 60.667 41.667 0.00 0.00 39.52 2.17
7780 10749 4.667161 GCATGTTGTTGCCATTGAAATTCG 60.667 41.667 0.00 0.00 36.60 3.34
7782 10751 2.077413 TGTTGCCATTGAAATTCGCC 57.923 45.000 0.00 0.00 0.00 5.54
7783 10752 1.337635 TGTTGCCATTGAAATTCGCCC 60.338 47.619 0.00 0.00 0.00 6.13
7784 10753 0.248843 TTGCCATTGAAATTCGCCCC 59.751 50.000 0.00 0.00 0.00 5.80
7785 10754 1.226945 GCCATTGAAATTCGCCCCG 60.227 57.895 0.00 0.00 0.00 5.73
7786 10755 1.437160 CCATTGAAATTCGCCCCGG 59.563 57.895 0.00 0.00 0.00 5.73
7787 10756 1.034838 CCATTGAAATTCGCCCCGGA 61.035 55.000 0.73 0.00 0.00 5.14
7788 10757 0.814457 CATTGAAATTCGCCCCGGAA 59.186 50.000 0.73 0.00 0.00 4.30
7789 10758 1.408702 CATTGAAATTCGCCCCGGAAT 59.591 47.619 0.73 0.00 38.24 3.01
7790 10759 2.421751 TTGAAATTCGCCCCGGAATA 57.578 45.000 0.73 0.00 35.65 1.75
7791 10760 1.670791 TGAAATTCGCCCCGGAATAC 58.329 50.000 0.73 0.00 35.65 1.89
7792 10761 1.210967 TGAAATTCGCCCCGGAATACT 59.789 47.619 0.73 0.00 35.65 2.12
7793 10762 1.602377 GAAATTCGCCCCGGAATACTG 59.398 52.381 0.73 0.00 35.65 2.74
7794 10763 0.544697 AATTCGCCCCGGAATACTGT 59.455 50.000 0.73 0.00 35.65 3.55
7795 10764 1.416243 ATTCGCCCCGGAATACTGTA 58.584 50.000 0.73 0.00 34.96 2.74
7796 10765 0.461135 TTCGCCCCGGAATACTGTAC 59.539 55.000 0.73 0.00 0.00 2.90
7797 10766 1.068585 CGCCCCGGAATACTGTACC 59.931 63.158 0.73 0.00 0.00 3.34
7798 10767 1.448924 GCCCCGGAATACTGTACCC 59.551 63.158 0.73 0.00 0.00 3.69
7799 10768 1.052694 GCCCCGGAATACTGTACCCT 61.053 60.000 0.73 0.00 0.00 4.34
7800 10769 1.046204 CCCCGGAATACTGTACCCTC 58.954 60.000 0.73 0.00 0.00 4.30
7801 10770 1.046204 CCCGGAATACTGTACCCTCC 58.954 60.000 0.73 0.00 0.00 4.30
7802 10771 1.412649 CCCGGAATACTGTACCCTCCT 60.413 57.143 0.73 0.00 0.00 3.69
7803 10772 1.962100 CCGGAATACTGTACCCTCCTC 59.038 57.143 0.00 0.00 0.00 3.71
7804 10773 2.662866 CGGAATACTGTACCCTCCTCA 58.337 52.381 9.49 0.00 0.00 3.86
7805 10774 2.623889 CGGAATACTGTACCCTCCTCAG 59.376 54.545 9.49 0.00 35.60 3.35
7806 10775 3.687551 CGGAATACTGTACCCTCCTCAGA 60.688 52.174 9.49 0.00 33.93 3.27
7807 10776 3.892588 GGAATACTGTACCCTCCTCAGAG 59.107 52.174 0.00 0.00 40.09 3.35
7808 10777 4.538738 GAATACTGTACCCTCCTCAGAGT 58.461 47.826 0.00 0.00 38.58 3.24
7809 10778 4.611564 ATACTGTACCCTCCTCAGAGTT 57.388 45.455 0.00 0.00 38.58 3.01
7810 10779 5.728937 ATACTGTACCCTCCTCAGAGTTA 57.271 43.478 0.00 0.00 38.58 2.24
7811 10780 3.699413 ACTGTACCCTCCTCAGAGTTAC 58.301 50.000 0.00 0.00 38.58 2.50
7819 10788 6.265304 ACCCTCCTCAGAGTTACTAGATTTT 58.735 40.000 0.00 0.00 38.58 1.82
7838 10807 3.328237 TTTCGTTTCTTTCGGCTGTTC 57.672 42.857 0.00 0.00 0.00 3.18
7842 10811 2.495084 GTTTCTTTCGGCTGTTCTCCT 58.505 47.619 0.00 0.00 0.00 3.69
7874 10843 4.577693 GCAATGTAGCTGGATTCTTGATGA 59.422 41.667 0.00 0.00 0.00 2.92
7877 10846 7.683704 GCAATGTAGCTGGATTCTTGATGAAAT 60.684 37.037 0.00 0.00 38.29 2.17
7878 10847 7.893124 ATGTAGCTGGATTCTTGATGAAATT 57.107 32.000 0.00 0.00 38.29 1.82
7879 10848 7.092137 TGTAGCTGGATTCTTGATGAAATTG 57.908 36.000 0.00 0.00 38.29 2.32
7880 10849 5.007385 AGCTGGATTCTTGATGAAATTGC 57.993 39.130 0.00 0.00 38.29 3.56
7881 10850 4.117685 GCTGGATTCTTGATGAAATTGCC 58.882 43.478 0.00 0.00 38.29 4.52
7882 10851 4.690122 CTGGATTCTTGATGAAATTGCCC 58.310 43.478 0.00 0.00 38.29 5.36
7883 10852 4.355549 TGGATTCTTGATGAAATTGCCCT 58.644 39.130 0.00 0.00 38.29 5.19
7884 10853 4.160814 TGGATTCTTGATGAAATTGCCCTG 59.839 41.667 0.00 0.00 38.29 4.45
7885 10854 4.442472 GGATTCTTGATGAAATTGCCCTGG 60.442 45.833 0.00 0.00 38.29 4.45
7886 10855 1.826720 TCTTGATGAAATTGCCCTGGC 59.173 47.619 0.00 0.00 42.35 4.85
7887 10856 5.606454 ATTCTTGATGAAATTGCCCTGGCA 61.606 41.667 6.80 6.80 42.96 4.92
7888 10857 6.867653 ATTCTTGATGAAATTGCCCTGGCAT 61.868 40.000 12.40 0.00 43.57 4.40
7889 10858 8.273756 ATTCTTGATGAAATTGCCCTGGCATT 62.274 38.462 12.40 5.66 43.57 3.56
7911 10880 7.362401 GCATTTCCCAACCTGATATGATGATAC 60.362 40.741 0.00 0.00 0.00 2.24
7926 10943 2.804368 GATACGAGAGGCGGCGATGG 62.804 65.000 12.98 0.00 46.49 3.51
7931 10948 4.467084 GAGGCGGCGATGGTTCCA 62.467 66.667 12.98 0.00 0.00 3.53
7952 10969 3.173240 GGAAGACGTCACGCTCGC 61.173 66.667 19.50 0.00 0.00 5.03
8073 11090 2.429971 CCTCCTACGTACCTTTCCCTTC 59.570 54.545 0.00 0.00 0.00 3.46
8095 11112 1.895131 GTCAACGGTGGGTAGGACTTA 59.105 52.381 0.00 0.00 32.96 2.24
8131 11152 1.152756 GGGCCGGCCTCAATTATGT 60.153 57.895 42.70 0.00 36.10 2.29
8143 11164 4.091075 CCTCAATTATGTGCAGATCGATCG 59.909 45.833 19.33 9.36 0.00 3.69
8171 11196 0.110010 GCGAAGAAAGTGAGCTTGGC 60.110 55.000 0.00 0.00 38.36 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.072116 CCATTCATGCAAACACGGCG 61.072 55.000 4.80 4.80 0.00 6.46
36 37 9.866936 TCGGATATAATTTACATAAACAAACGC 57.133 29.630 0.00 0.00 0.00 4.84
74 75 1.832883 TTGTGCAAATACGGCCAGAT 58.167 45.000 2.24 0.00 0.00 2.90
77 78 3.393089 AAATTTGTGCAAATACGGCCA 57.607 38.095 2.24 0.00 39.88 5.36
111 112 9.793252 GTCTGCATACATTTCAACTATCATTTT 57.207 29.630 0.00 0.00 0.00 1.82
112 113 8.959548 TGTCTGCATACATTTCAACTATCATTT 58.040 29.630 0.00 0.00 0.00 2.32
113 114 8.510243 TGTCTGCATACATTTCAACTATCATT 57.490 30.769 0.00 0.00 0.00 2.57
120 121 5.362556 ACACTGTCTGCATACATTTCAAC 57.637 39.130 5.27 0.00 0.00 3.18
152 153 2.443394 GGACATGGATGCGGGAGGA 61.443 63.158 0.00 0.00 0.00 3.71
153 154 2.111878 GGACATGGATGCGGGAGG 59.888 66.667 0.00 0.00 0.00 4.30
177 178 3.445096 CCCGCAAATTTTCTCCTGATTCT 59.555 43.478 0.00 0.00 0.00 2.40
180 181 2.755103 GACCCGCAAATTTTCTCCTGAT 59.245 45.455 0.00 0.00 0.00 2.90
181 182 2.159382 GACCCGCAAATTTTCTCCTGA 58.841 47.619 0.00 0.00 0.00 3.86
199 218 2.750888 GGGCATCTTCAACGGCGAC 61.751 63.158 16.62 0.00 0.00 5.19
221 240 3.810188 GGCAAGGGGGCTAGGTCC 61.810 72.222 0.00 0.00 39.42 4.46
234 253 6.237901 TGATTTCTAAACAGCTAGAAGGCAA 58.762 36.000 0.00 0.00 38.74 4.52
267 286 7.725251 ACAATGATTTCTAAGCAGGTCAAAAA 58.275 30.769 0.00 0.00 0.00 1.94
268 287 7.288810 ACAATGATTTCTAAGCAGGTCAAAA 57.711 32.000 0.00 0.00 0.00 2.44
269 288 6.899393 ACAATGATTTCTAAGCAGGTCAAA 57.101 33.333 0.00 0.00 0.00 2.69
270 289 6.899393 AACAATGATTTCTAAGCAGGTCAA 57.101 33.333 0.00 0.00 0.00 3.18
271 290 6.899393 AAACAATGATTTCTAAGCAGGTCA 57.101 33.333 0.00 0.00 0.00 4.02
336 515 2.483877 TGGATCGTTGAAGCACATGTTC 59.516 45.455 0.00 0.00 0.00 3.18
361 540 1.066454 CGGTCACCAAGTTTGAAACCC 59.934 52.381 4.14 0.00 0.00 4.11
415 614 8.107095 AGTGGGTGAGTAAATAATTAGCTTGAA 58.893 33.333 0.00 0.00 0.00 2.69
480 679 1.002366 GTACAGGAGCGTGCATCTTG 58.998 55.000 0.00 0.00 0.00 3.02
548 750 2.815478 CGCTCTGGAGTAGGACAATTC 58.185 52.381 0.00 0.00 0.00 2.17
556 759 4.577246 GGCCGCGCTCTGGAGTAG 62.577 72.222 5.56 0.00 0.00 2.57
571 774 1.039856 TGCTCAACAAGGGAAAAGGC 58.960 50.000 0.00 0.00 0.00 4.35
602 807 2.088950 GTCGGATCAGACGGGAAAAA 57.911 50.000 10.29 0.00 0.00 1.94
603 808 3.826637 GTCGGATCAGACGGGAAAA 57.173 52.632 10.29 0.00 0.00 2.29
610 815 1.945354 TTGGAGCCGTCGGATCAGAC 61.945 60.000 29.13 15.18 40.28 3.51
611 816 1.254975 TTTGGAGCCGTCGGATCAGA 61.255 55.000 29.13 15.00 40.28 3.27
612 817 1.084370 GTTTGGAGCCGTCGGATCAG 61.084 60.000 29.13 0.00 40.28 2.90
613 818 1.079405 GTTTGGAGCCGTCGGATCA 60.079 57.895 29.13 13.79 40.28 2.92
614 819 2.165301 CGTTTGGAGCCGTCGGATC 61.165 63.158 21.26 21.26 37.39 3.36
615 820 2.125673 CGTTTGGAGCCGTCGGAT 60.126 61.111 17.49 9.33 0.00 4.18
616 821 3.277211 CTCGTTTGGAGCCGTCGGA 62.277 63.158 17.49 0.00 35.63 4.55
617 822 2.809601 CTCGTTTGGAGCCGTCGG 60.810 66.667 6.99 6.99 35.63 4.79
625 830 1.957186 CGCCCGAAACTCGTTTGGA 60.957 57.895 6.17 0.00 38.40 3.53
626 831 2.554272 CGCCCGAAACTCGTTTGG 59.446 61.111 0.00 0.00 38.40 3.28
686 895 4.918060 CGTGTGTGTGTGTGCGCG 62.918 66.667 0.00 0.00 0.00 6.86
688 897 3.772000 CTGCGTGTGTGTGTGTGCG 62.772 63.158 0.00 0.00 0.00 5.34
689 898 2.023181 CTGCGTGTGTGTGTGTGC 59.977 61.111 0.00 0.00 0.00 4.57
690 899 2.023181 GCTGCGTGTGTGTGTGTG 59.977 61.111 0.00 0.00 0.00 3.82
691 900 2.435762 TGCTGCGTGTGTGTGTGT 60.436 55.556 0.00 0.00 0.00 3.72
692 901 2.023181 GTGCTGCGTGTGTGTGTG 59.977 61.111 0.00 0.00 0.00 3.82
693 902 3.202001 GGTGCTGCGTGTGTGTGT 61.202 61.111 0.00 0.00 0.00 3.72
694 903 3.952675 GGGTGCTGCGTGTGTGTG 61.953 66.667 0.00 0.00 0.00 3.82
695 904 3.986072 TTGGGTGCTGCGTGTGTGT 62.986 57.895 0.00 0.00 0.00 3.72
696 905 2.769539 TTTGGGTGCTGCGTGTGTG 61.770 57.895 0.00 0.00 0.00 3.82
697 906 2.439338 TTTGGGTGCTGCGTGTGT 60.439 55.556 0.00 0.00 0.00 3.72
698 907 2.026014 GTTTGGGTGCTGCGTGTG 59.974 61.111 0.00 0.00 0.00 3.82
699 908 3.216292 GGTTTGGGTGCTGCGTGT 61.216 61.111 0.00 0.00 0.00 4.49
804 1015 1.923899 TGTTTATTATCGCCGCGTCA 58.076 45.000 13.39 0.00 0.00 4.35
823 1034 4.647399 TCCAATCCAAACGGTTTCTTTCTT 59.353 37.500 2.51 0.00 0.00 2.52
824 1035 4.211920 TCCAATCCAAACGGTTTCTTTCT 58.788 39.130 2.51 0.00 0.00 2.52
825 1036 4.546570 CTCCAATCCAAACGGTTTCTTTC 58.453 43.478 2.51 0.00 0.00 2.62
826 1037 3.243737 GCTCCAATCCAAACGGTTTCTTT 60.244 43.478 2.51 0.00 0.00 2.52
1561 1815 7.283625 ACAATGAGCTATAGTCGAGAAATCT 57.716 36.000 0.84 0.00 0.00 2.40
1662 1916 4.022849 AGGCGAAATTTTCTTCAACTCCAG 60.023 41.667 7.50 0.00 0.00 3.86
1699 1953 2.727916 GCAGCACAGCACGGTAAAATAC 60.728 50.000 0.00 0.00 0.00 1.89
2046 2300 0.390603 CAATCCTGCGGTTACACGGA 60.391 55.000 0.00 0.00 0.00 4.69
2138 2397 5.451937 GCAATGCTAGTGTGACCTAGATACA 60.452 44.000 10.87 0.00 37.24 2.29
2139 2398 4.985409 GCAATGCTAGTGTGACCTAGATAC 59.015 45.833 10.87 0.00 37.24 2.24
2187 2447 5.006386 CCTGAACAAGTCCTATCAGCTTTT 58.994 41.667 0.00 0.00 38.34 2.27
2292 2552 1.134788 GGGTATGAGGTGAACAGACCG 60.135 57.143 0.00 0.00 46.53 4.79
2475 2735 2.204151 CCAACCACCCCTCCTCCT 60.204 66.667 0.00 0.00 0.00 3.69
2500 2760 1.462238 AGCCGCTCCTCCCCAATAT 60.462 57.895 0.00 0.00 0.00 1.28
2596 2856 6.610075 ATGTCTTGCATGGGAAAGTATTTT 57.390 33.333 0.00 0.00 35.63 1.82
2624 2885 2.912025 CAACAAGCCACCCGCCTT 60.912 61.111 0.00 0.00 38.78 4.35
2711 2972 3.767630 GAGTTGGTGGTGGTGGCGT 62.768 63.158 0.00 0.00 0.00 5.68
2790 3053 8.362639 GTGATACCCTCGTTGTTTCCTATTATA 58.637 37.037 0.00 0.00 0.00 0.98
2791 3054 7.147620 TGTGATACCCTCGTTGTTTCCTATTAT 60.148 37.037 0.00 0.00 0.00 1.28
2792 3055 6.154877 TGTGATACCCTCGTTGTTTCCTATTA 59.845 38.462 0.00 0.00 0.00 0.98
2793 3056 5.046159 TGTGATACCCTCGTTGTTTCCTATT 60.046 40.000 0.00 0.00 0.00 1.73
2794 3057 4.468510 TGTGATACCCTCGTTGTTTCCTAT 59.531 41.667 0.00 0.00 0.00 2.57
2864 3127 7.384932 AGTTGCTATGGACAAAACAAATTAAGC 59.615 33.333 0.00 0.00 0.00 3.09
3339 4035 1.078214 CACCGCCATGTCCACATCT 60.078 57.895 0.00 0.00 33.61 2.90
3470 4185 6.485313 AGACGATTCAAACTAAATTCACCACA 59.515 34.615 0.00 0.00 0.00 4.17
3485 4200 4.429108 TGCGATTATGACAGACGATTCAA 58.571 39.130 0.00 0.00 0.00 2.69
3591 4307 3.097614 TGGAGCTCCAGAAACTACCTAC 58.902 50.000 32.00 0.26 42.01 3.18
3639 4355 9.859427 AAAGCACGTACAAATTACTAGTGTATA 57.141 29.630 5.39 0.00 30.87 1.47
3640 4356 8.653338 CAAAGCACGTACAAATTACTAGTGTAT 58.347 33.333 5.39 0.00 30.87 2.29
3641 4357 7.359431 GCAAAGCACGTACAAATTACTAGTGTA 60.359 37.037 5.39 0.00 0.00 2.90
3669 4385 8.102676 ACCATGCATATACATAATAAGCTGACA 58.897 33.333 0.00 0.00 36.07 3.58
3763 4487 8.004215 TGATACCAAAAATGCCTACTGGATATT 58.996 33.333 0.00 0.00 34.57 1.28
4071 6639 9.901172 GGTACCTAGGAAAAATAGAATGAGAAA 57.099 33.333 17.98 0.00 0.00 2.52
4130 6699 6.149973 GCATGTGAGCCTAGAATTGCAATATA 59.850 38.462 13.39 8.13 0.00 0.86
4150 6736 0.035317 TCTCAGGAAAGCGTGCATGT 59.965 50.000 7.93 0.00 0.00 3.21
4183 6769 5.069119 ACATGTTCACAAGAGACAGTACTGA 59.931 40.000 29.30 2.08 0.00 3.41
4505 7129 6.028368 CAGTGCATCTTCTTGCTTATTCTTG 58.972 40.000 0.00 0.00 43.18 3.02
4616 7240 2.957402 GGGCAATATCCCAGTGATCA 57.043 50.000 0.00 0.00 45.82 2.92
4643 7267 8.924511 TTTTTCCTCATATAATCAGTCCATCC 57.075 34.615 0.00 0.00 0.00 3.51
4694 7318 7.147915 TGTGGAGAATTATTCCCATTAAAGTGC 60.148 37.037 14.84 4.53 34.20 4.40
4713 7340 2.549992 CGTGGATGAAACCTTGTGGAGA 60.550 50.000 0.00 0.00 37.04 3.71
4756 7383 0.605589 ACTACGCCTTTTCACCTGCC 60.606 55.000 0.00 0.00 0.00 4.85
4757 7384 1.235724 AACTACGCCTTTTCACCTGC 58.764 50.000 0.00 0.00 0.00 4.85
4764 7391 7.974482 AAACTGTCTATTAACTACGCCTTTT 57.026 32.000 0.00 0.00 0.00 2.27
4910 7664 6.183360 GCACGTAGCCTTCAACCTAAAATATT 60.183 38.462 0.00 0.00 37.23 1.28
4911 7665 5.296035 GCACGTAGCCTTCAACCTAAAATAT 59.704 40.000 0.00 0.00 37.23 1.28
4912 7666 4.632688 GCACGTAGCCTTCAACCTAAAATA 59.367 41.667 0.00 0.00 37.23 1.40
4913 7667 3.439129 GCACGTAGCCTTCAACCTAAAAT 59.561 43.478 0.00 0.00 37.23 1.82
4914 7668 2.809696 GCACGTAGCCTTCAACCTAAAA 59.190 45.455 0.00 0.00 37.23 1.52
4915 7669 2.419667 GCACGTAGCCTTCAACCTAAA 58.580 47.619 0.00 0.00 37.23 1.85
4916 7670 2.088950 GCACGTAGCCTTCAACCTAA 57.911 50.000 0.00 0.00 37.23 2.69
4917 7671 3.826637 GCACGTAGCCTTCAACCTA 57.173 52.632 0.00 0.00 37.23 3.08
4918 7672 4.695560 GCACGTAGCCTTCAACCT 57.304 55.556 0.00 0.00 37.23 3.50
4927 7681 1.201965 GCAATTCAGACAGCACGTAGC 60.202 52.381 0.00 0.00 46.19 3.58
4928 7682 2.068519 TGCAATTCAGACAGCACGTAG 58.931 47.619 0.00 0.00 31.05 3.51
4929 7683 1.798223 GTGCAATTCAGACAGCACGTA 59.202 47.619 0.00 0.00 46.35 3.57
4930 7684 0.588252 GTGCAATTCAGACAGCACGT 59.412 50.000 0.00 0.00 46.35 4.49
4931 7685 3.373020 GTGCAATTCAGACAGCACG 57.627 52.632 0.00 0.00 46.35 5.34
4933 7687 0.594602 GCAGTGCAATTCAGACAGCA 59.405 50.000 11.09 0.00 34.10 4.41
4934 7688 0.594602 TGCAGTGCAATTCAGACAGC 59.405 50.000 17.26 0.00 34.76 4.40
4935 7689 3.064958 CCTATGCAGTGCAATTCAGACAG 59.935 47.826 23.90 8.75 43.62 3.51
4936 7690 3.011818 CCTATGCAGTGCAATTCAGACA 58.988 45.455 23.90 0.00 43.62 3.41
4937 7691 3.273434 TCCTATGCAGTGCAATTCAGAC 58.727 45.455 23.90 0.00 43.62 3.51
4938 7692 3.632643 TCCTATGCAGTGCAATTCAGA 57.367 42.857 23.90 11.83 43.62 3.27
4939 7693 5.530171 AGTTATCCTATGCAGTGCAATTCAG 59.470 40.000 23.90 15.78 43.62 3.02
4940 7694 5.439721 AGTTATCCTATGCAGTGCAATTCA 58.560 37.500 23.90 7.28 43.62 2.57
4941 7695 6.382869 AAGTTATCCTATGCAGTGCAATTC 57.617 37.500 23.90 7.87 43.62 2.17
4942 7696 6.780457 AAAGTTATCCTATGCAGTGCAATT 57.220 33.333 23.90 9.41 43.62 2.32
4943 7697 7.880160 TTAAAGTTATCCTATGCAGTGCAAT 57.120 32.000 23.90 13.51 43.62 3.56
4944 7698 7.695480 TTTAAAGTTATCCTATGCAGTGCAA 57.305 32.000 23.90 5.66 43.62 4.08
4945 7699 7.695480 TTTTAAAGTTATCCTATGCAGTGCA 57.305 32.000 22.22 22.22 44.86 4.57
4946 7700 9.884465 CTATTTTAAAGTTATCCTATGCAGTGC 57.116 33.333 8.58 8.58 0.00 4.40
4988 7742 9.961266 CGTTATTTCTCAAATGTAATCACGTAA 57.039 29.630 0.00 0.00 32.38 3.18
4989 7743 9.356433 TCGTTATTTCTCAAATGTAATCACGTA 57.644 29.630 0.00 0.00 32.38 3.57
4990 7744 8.166706 GTCGTTATTTCTCAAATGTAATCACGT 58.833 33.333 0.00 0.00 32.38 4.49
4991 7745 8.166066 TGTCGTTATTTCTCAAATGTAATCACG 58.834 33.333 0.00 0.00 32.38 4.35
4992 7746 9.262472 GTGTCGTTATTTCTCAAATGTAATCAC 57.738 33.333 0.00 0.00 32.38 3.06
4993 7747 9.214957 AGTGTCGTTATTTCTCAAATGTAATCA 57.785 29.630 0.00 0.00 32.38 2.57
4997 7751 9.647797 ACATAGTGTCGTTATTTCTCAAATGTA 57.352 29.630 0.00 0.00 32.38 2.29
4998 7752 8.547967 ACATAGTGTCGTTATTTCTCAAATGT 57.452 30.769 0.00 0.00 32.38 2.71
4999 7753 9.265938 CAACATAGTGTCGTTATTTCTCAAATG 57.734 33.333 0.00 0.00 32.38 2.32
5000 7754 7.962918 GCAACATAGTGTCGTTATTTCTCAAAT 59.037 33.333 0.00 0.00 34.90 2.32
5001 7755 7.172532 AGCAACATAGTGTCGTTATTTCTCAAA 59.827 33.333 0.00 0.00 0.00 2.69
5002 7756 6.649141 AGCAACATAGTGTCGTTATTTCTCAA 59.351 34.615 0.00 0.00 0.00 3.02
5003 7757 6.163476 AGCAACATAGTGTCGTTATTTCTCA 58.837 36.000 0.00 0.00 0.00 3.27
5004 7758 6.531948 AGAGCAACATAGTGTCGTTATTTCTC 59.468 38.462 0.00 0.00 0.00 2.87
5005 7759 6.311445 CAGAGCAACATAGTGTCGTTATTTCT 59.689 38.462 0.00 0.00 0.00 2.52
5006 7760 6.090898 ACAGAGCAACATAGTGTCGTTATTTC 59.909 38.462 0.00 0.00 0.00 2.17
5007 7761 5.932303 ACAGAGCAACATAGTGTCGTTATTT 59.068 36.000 0.00 0.00 0.00 1.40
5008 7762 5.479306 ACAGAGCAACATAGTGTCGTTATT 58.521 37.500 0.00 0.00 0.00 1.40
5009 7763 5.073311 ACAGAGCAACATAGTGTCGTTAT 57.927 39.130 0.00 0.00 0.00 1.89
5010 7764 4.514781 ACAGAGCAACATAGTGTCGTTA 57.485 40.909 0.00 0.00 0.00 3.18
5011 7765 3.386768 ACAGAGCAACATAGTGTCGTT 57.613 42.857 0.00 0.00 0.00 3.85
5012 7766 3.005897 AGAACAGAGCAACATAGTGTCGT 59.994 43.478 0.00 0.00 0.00 4.34
5013 7767 3.366121 CAGAACAGAGCAACATAGTGTCG 59.634 47.826 0.00 0.00 0.00 4.35
5014 7768 4.560128 TCAGAACAGAGCAACATAGTGTC 58.440 43.478 0.00 0.00 0.00 3.67
5015 7769 4.607293 TCAGAACAGAGCAACATAGTGT 57.393 40.909 0.00 0.00 0.00 3.55
5016 7770 5.173664 TCATCAGAACAGAGCAACATAGTG 58.826 41.667 0.00 0.00 0.00 2.74
5017 7771 5.411831 TCATCAGAACAGAGCAACATAGT 57.588 39.130 0.00 0.00 0.00 2.12
5018 7772 4.809958 CCTCATCAGAACAGAGCAACATAG 59.190 45.833 0.00 0.00 0.00 2.23
5019 7773 4.223700 ACCTCATCAGAACAGAGCAACATA 59.776 41.667 0.00 0.00 0.00 2.29
5020 7774 3.008813 ACCTCATCAGAACAGAGCAACAT 59.991 43.478 0.00 0.00 0.00 2.71
5021 7775 2.369860 ACCTCATCAGAACAGAGCAACA 59.630 45.455 0.00 0.00 0.00 3.33
5022 7776 3.051081 ACCTCATCAGAACAGAGCAAC 57.949 47.619 0.00 0.00 0.00 4.17
5023 7777 4.223700 ACATACCTCATCAGAACAGAGCAA 59.776 41.667 0.00 0.00 0.00 3.91
5024 7778 3.771479 ACATACCTCATCAGAACAGAGCA 59.229 43.478 0.00 0.00 0.00 4.26
5025 7779 4.118410 CACATACCTCATCAGAACAGAGC 58.882 47.826 0.00 0.00 0.00 4.09
5026 7780 5.588958 TCACATACCTCATCAGAACAGAG 57.411 43.478 0.00 0.00 0.00 3.35
5027 7781 5.163374 CCATCACATACCTCATCAGAACAGA 60.163 44.000 0.00 0.00 0.00 3.41
5028 7782 5.055144 CCATCACATACCTCATCAGAACAG 58.945 45.833 0.00 0.00 0.00 3.16
5029 7783 4.471025 ACCATCACATACCTCATCAGAACA 59.529 41.667 0.00 0.00 0.00 3.18
5030 7784 5.028549 ACCATCACATACCTCATCAGAAC 57.971 43.478 0.00 0.00 0.00 3.01
5031 7785 4.716287 TGACCATCACATACCTCATCAGAA 59.284 41.667 0.00 0.00 0.00 3.02
5032 7786 4.289245 TGACCATCACATACCTCATCAGA 58.711 43.478 0.00 0.00 0.00 3.27
5033 7787 4.677673 TGACCATCACATACCTCATCAG 57.322 45.455 0.00 0.00 0.00 2.90
5034 7788 5.130809 TGATTGACCATCACATACCTCATCA 59.869 40.000 0.00 0.00 36.94 3.07
5035 7789 5.614308 TGATTGACCATCACATACCTCATC 58.386 41.667 0.00 0.00 36.94 2.92
5036 7790 5.635278 TGATTGACCATCACATACCTCAT 57.365 39.130 0.00 0.00 36.94 2.90
5037 7791 5.430886 CTTGATTGACCATCACATACCTCA 58.569 41.667 0.00 0.00 41.98 3.86
5038 7792 4.274459 GCTTGATTGACCATCACATACCTC 59.726 45.833 0.00 0.00 41.98 3.85
5039 7793 4.202441 GCTTGATTGACCATCACATACCT 58.798 43.478 0.00 0.00 41.98 3.08
5240 8204 5.160641 CCACTAATTGTTGGAAAATGGTCG 58.839 41.667 1.67 0.00 0.00 4.79
5448 8412 4.699257 AGCCAAACAAAACAAATCAAAGCA 59.301 33.333 0.00 0.00 0.00 3.91
5627 8591 9.736414 ATAACCTTTGAATGATATCTGGATCAG 57.264 33.333 3.98 0.00 39.18 2.90
5681 8645 5.068723 GCCAATGATTCTTGATTGAGGTCAT 59.931 40.000 0.00 0.00 32.24 3.06
5954 8918 8.806429 TGCAGATTGATAGGAAACAAAAGATA 57.194 30.769 0.00 0.00 0.00 1.98
5955 8919 7.613022 TCTGCAGATTGATAGGAAACAAAAGAT 59.387 33.333 13.74 0.00 0.00 2.40
5957 8921 7.025963 GTCTGCAGATTGATAGGAAACAAAAG 58.974 38.462 21.47 0.00 0.00 2.27
5978 8944 9.994432 GTGAGTTGAAATATAAATGGAAGTCTG 57.006 33.333 0.00 0.00 0.00 3.51
6171 9137 0.392461 TTGGCGGCTCTACACCATTC 60.392 55.000 11.43 0.00 30.85 2.67
6212 9178 2.348666 GCGGTACATGTTGCTTCTGTAG 59.651 50.000 2.30 0.00 0.00 2.74
6217 9183 0.727398 GAGGCGGTACATGTTGCTTC 59.273 55.000 2.30 8.63 0.00 3.86
6218 9184 0.324943 AGAGGCGGTACATGTTGCTT 59.675 50.000 2.30 2.38 0.00 3.91
6603 9569 1.645402 TTGCCCCAGAAGCCCCTATC 61.645 60.000 0.00 0.00 0.00 2.08
6762 9728 4.688413 CCACTTTCAGTCTCTGTTAGAAGC 59.312 45.833 0.00 0.00 35.47 3.86
6906 9872 1.888512 GCAGCATTCTCCTTGTTCCAA 59.111 47.619 0.00 0.00 0.00 3.53
6907 9873 1.538047 GCAGCATTCTCCTTGTTCCA 58.462 50.000 0.00 0.00 0.00 3.53
7034 10000 2.572104 GCTTTTCTCTTCCCCCTGTCTA 59.428 50.000 0.00 0.00 0.00 2.59
7134 10100 0.474184 ACAGGGTTTGGGACTGAGTG 59.526 55.000 0.00 0.00 36.17 3.51
7135 10101 0.765510 GACAGGGTTTGGGACTGAGT 59.234 55.000 0.00 0.00 36.17 3.41
7160 10126 2.158769 TCTGCTTGAGCTTGAACCAGAA 60.159 45.455 4.44 0.00 42.66 3.02
7227 10193 9.282569 GCTAATGATTATTCACCTCATCTTTCT 57.717 33.333 0.00 0.00 33.85 2.52
7244 10210 9.153479 ACTACCTAGAATGAGAAGCTAATGATT 57.847 33.333 0.00 0.00 0.00 2.57
7394 10360 2.756760 CAACATGCTCACAGCCCTAAAT 59.243 45.455 0.00 0.00 41.51 1.40
7395 10361 2.161855 CAACATGCTCACAGCCCTAAA 58.838 47.619 0.00 0.00 41.51 1.85
7396 10362 1.350684 TCAACATGCTCACAGCCCTAA 59.649 47.619 0.00 0.00 41.51 2.69
7397 10363 0.983467 TCAACATGCTCACAGCCCTA 59.017 50.000 0.00 0.00 41.51 3.53
7398 10364 0.607489 GTCAACATGCTCACAGCCCT 60.607 55.000 0.00 0.00 41.51 5.19
7399 10365 0.890542 TGTCAACATGCTCACAGCCC 60.891 55.000 0.00 0.00 41.51 5.19
7400 10366 0.520404 CTGTCAACATGCTCACAGCC 59.480 55.000 5.78 0.00 41.51 4.85
7401 10367 0.520404 CCTGTCAACATGCTCACAGC 59.480 55.000 11.36 0.00 42.82 4.40
7483 10449 2.224305 GGATCCTACCTTGAATCACCGG 60.224 54.545 3.84 0.00 0.00 5.28
7583 10549 7.633789 TCTCTTTCTCAGGCAGGTAAAATTAT 58.366 34.615 0.00 0.00 0.00 1.28
7593 10559 2.028294 TCAAGCTCTCTTTCTCAGGCAG 60.028 50.000 0.00 0.00 0.00 4.85
7613 10582 5.419760 AAACTTGAACGAAGGCTTTACTC 57.580 39.130 0.00 0.00 35.78 2.59
7624 10593 4.083003 AGCTGAACACAAAAACTTGAACGA 60.083 37.500 0.00 0.00 0.00 3.85
7625 10594 4.165779 AGCTGAACACAAAAACTTGAACG 58.834 39.130 0.00 0.00 0.00 3.95
7626 10595 6.237569 GCTTAGCTGAACACAAAAACTTGAAC 60.238 38.462 0.00 0.00 0.00 3.18
7627 10596 5.804979 GCTTAGCTGAACACAAAAACTTGAA 59.195 36.000 0.00 0.00 0.00 2.69
7628 10597 5.125417 AGCTTAGCTGAACACAAAAACTTGA 59.875 36.000 5.70 0.00 37.57 3.02
7629 10598 5.343249 AGCTTAGCTGAACACAAAAACTTG 58.657 37.500 5.70 0.00 37.57 3.16
7630 10599 5.582689 AGCTTAGCTGAACACAAAAACTT 57.417 34.783 5.70 0.00 37.57 2.66
7651 10620 7.984050 TGTCTTAGAAAATATCCAGAGCAGAAG 59.016 37.037 0.00 0.00 0.00 2.85
7666 10635 5.804639 TGCTCCAGCTATTGTCTTAGAAAA 58.195 37.500 0.00 0.00 42.66 2.29
7671 10640 3.711190 TCCATGCTCCAGCTATTGTCTTA 59.289 43.478 0.00 0.00 42.66 2.10
7676 10645 2.219458 CAGTCCATGCTCCAGCTATTG 58.781 52.381 0.00 0.00 42.66 1.90
7694 10663 1.382419 CGAGTTACACGCGAAGAACAG 59.618 52.381 15.93 7.82 44.09 3.16
7702 10671 3.481467 GGATTTCTTTCGAGTTACACGCG 60.481 47.826 3.53 3.53 42.73 6.01
7703 10672 3.430895 TGGATTTCTTTCGAGTTACACGC 59.569 43.478 0.00 0.00 0.00 5.34
7713 10682 2.819608 ACACCCACATGGATTTCTTTCG 59.180 45.455 0.00 0.00 37.39 3.46
7731 10700 0.676466 TGATCGGAACATGCCCACAC 60.676 55.000 0.00 0.00 0.00 3.82
7732 10701 0.676466 GTGATCGGAACATGCCCACA 60.676 55.000 0.00 0.00 0.00 4.17
7736 10705 1.009829 GACAGTGATCGGAACATGCC 58.990 55.000 0.00 0.00 0.00 4.40
7737 10706 1.009829 GGACAGTGATCGGAACATGC 58.990 55.000 0.00 0.00 0.00 4.06
7739 10708 0.460284 GCGGACAGTGATCGGAACAT 60.460 55.000 0.00 0.00 0.00 2.71
7740 10709 1.080093 GCGGACAGTGATCGGAACA 60.080 57.895 0.00 0.00 0.00 3.18
7741 10710 0.460284 ATGCGGACAGTGATCGGAAC 60.460 55.000 0.00 0.00 0.00 3.62
7744 10713 0.740868 AACATGCGGACAGTGATCGG 60.741 55.000 0.00 0.00 0.00 4.18
7745 10714 0.371301 CAACATGCGGACAGTGATCG 59.629 55.000 0.00 0.98 0.00 3.69
7746 10715 1.442769 ACAACATGCGGACAGTGATC 58.557 50.000 0.00 0.00 0.00 2.92
7747 10716 1.536766 CAACAACATGCGGACAGTGAT 59.463 47.619 0.00 0.00 0.00 3.06
7748 10717 0.943673 CAACAACATGCGGACAGTGA 59.056 50.000 0.00 0.00 0.00 3.41
7749 10718 0.661187 GCAACAACATGCGGACAGTG 60.661 55.000 0.00 0.00 36.45 3.66
7750 10719 1.654220 GCAACAACATGCGGACAGT 59.346 52.632 0.00 0.00 36.45 3.55
7768 10737 1.034838 TCCGGGGCGAATTTCAATGG 61.035 55.000 0.00 0.00 0.00 3.16
7772 10741 1.210967 AGTATTCCGGGGCGAATTTCA 59.789 47.619 0.00 0.00 34.35 2.69
7773 10742 1.602377 CAGTATTCCGGGGCGAATTTC 59.398 52.381 0.00 0.00 34.35 2.17
7776 10745 1.069668 GTACAGTATTCCGGGGCGAAT 59.930 52.381 0.00 0.00 36.45 3.34
7779 10748 1.068585 GGTACAGTATTCCGGGGCG 59.931 63.158 0.00 0.00 0.00 6.13
7780 10749 1.052694 AGGGTACAGTATTCCGGGGC 61.053 60.000 0.00 0.00 0.00 5.80
7782 10751 1.046204 GGAGGGTACAGTATTCCGGG 58.954 60.000 0.00 0.00 0.00 5.73
7783 10752 1.962100 GAGGAGGGTACAGTATTCCGG 59.038 57.143 0.00 0.00 33.16 5.14
7784 10753 2.623889 CTGAGGAGGGTACAGTATTCCG 59.376 54.545 0.00 0.00 33.16 4.30
7785 10754 3.892588 CTCTGAGGAGGGTACAGTATTCC 59.107 52.174 0.00 2.09 36.03 3.01
7786 10755 4.538738 ACTCTGAGGAGGGTACAGTATTC 58.461 47.826 9.85 0.00 43.46 1.75
7787 10756 4.611564 ACTCTGAGGAGGGTACAGTATT 57.388 45.455 9.85 0.00 43.46 1.89
7788 10757 4.611564 AACTCTGAGGAGGGTACAGTAT 57.388 45.455 9.85 0.00 43.46 2.12
7789 10758 4.539293 AGTAACTCTGAGGAGGGTACAGTA 59.461 45.833 9.85 0.00 43.46 2.74
7790 10759 3.334280 AGTAACTCTGAGGAGGGTACAGT 59.666 47.826 9.85 0.00 43.46 3.55
7791 10760 3.970842 AGTAACTCTGAGGAGGGTACAG 58.029 50.000 9.85 0.00 43.46 2.74
7792 10761 4.786994 TCTAGTAACTCTGAGGAGGGTACA 59.213 45.833 9.85 0.00 43.46 2.90
7793 10762 5.370875 TCTAGTAACTCTGAGGAGGGTAC 57.629 47.826 9.85 3.68 43.46 3.34
7794 10763 6.593759 AATCTAGTAACTCTGAGGAGGGTA 57.406 41.667 9.85 0.00 43.46 3.69
7795 10764 5.475398 AATCTAGTAACTCTGAGGAGGGT 57.525 43.478 9.85 0.00 43.46 4.34
7796 10765 6.800072 AAAATCTAGTAACTCTGAGGAGGG 57.200 41.667 9.85 0.00 43.46 4.30
7797 10766 6.975772 CGAAAAATCTAGTAACTCTGAGGAGG 59.024 42.308 9.85 0.00 43.46 4.30
7798 10767 7.540299 ACGAAAAATCTAGTAACTCTGAGGAG 58.460 38.462 9.85 0.00 44.62 3.69
7799 10768 7.463961 ACGAAAAATCTAGTAACTCTGAGGA 57.536 36.000 9.85 0.00 0.00 3.71
7800 10769 8.535690 AAACGAAAAATCTAGTAACTCTGAGG 57.464 34.615 9.85 0.00 0.00 3.86
7801 10770 9.413048 AGAAACGAAAAATCTAGTAACTCTGAG 57.587 33.333 2.45 2.45 0.00 3.35
7802 10771 9.760077 AAGAAACGAAAAATCTAGTAACTCTGA 57.240 29.630 0.00 0.00 0.00 3.27
7805 10774 9.513554 CGAAAGAAACGAAAAATCTAGTAACTC 57.486 33.333 0.00 0.00 0.00 3.01
7806 10775 8.493547 CCGAAAGAAACGAAAAATCTAGTAACT 58.506 33.333 0.00 0.00 0.00 2.24
7807 10776 7.267811 GCCGAAAGAAACGAAAAATCTAGTAAC 59.732 37.037 0.00 0.00 0.00 2.50
7808 10777 7.172019 AGCCGAAAGAAACGAAAAATCTAGTAA 59.828 33.333 0.00 0.00 0.00 2.24
7809 10778 6.647895 AGCCGAAAGAAACGAAAAATCTAGTA 59.352 34.615 0.00 0.00 0.00 1.82
7810 10779 5.469084 AGCCGAAAGAAACGAAAAATCTAGT 59.531 36.000 0.00 0.00 0.00 2.57
7811 10780 5.790495 CAGCCGAAAGAAACGAAAAATCTAG 59.210 40.000 0.00 0.00 0.00 2.43
7819 10788 2.542595 GAGAACAGCCGAAAGAAACGAA 59.457 45.455 0.00 0.00 0.00 3.85
7838 10807 3.411517 ATTGCCCCGGACCAGGAG 61.412 66.667 0.73 0.00 0.00 3.69
7842 10811 2.994699 CTACATTGCCCCGGACCA 59.005 61.111 0.73 0.00 0.00 4.02
7879 10848 2.659063 GGTTGGGAAATGCCAGGGC 61.659 63.158 2.62 2.62 38.95 5.19
7880 10849 1.079073 AGGTTGGGAAATGCCAGGG 59.921 57.895 0.00 0.00 38.95 4.45
7881 10850 0.251742 TCAGGTTGGGAAATGCCAGG 60.252 55.000 0.00 0.00 38.95 4.45
7882 10851 1.856629 ATCAGGTTGGGAAATGCCAG 58.143 50.000 0.00 0.00 38.95 4.85
7883 10852 3.053019 TCATATCAGGTTGGGAAATGCCA 60.053 43.478 0.00 0.00 38.95 4.92
7884 10853 3.565307 TCATATCAGGTTGGGAAATGCC 58.435 45.455 0.00 0.00 0.00 4.40
7885 10854 4.828939 TCATCATATCAGGTTGGGAAATGC 59.171 41.667 0.00 0.00 0.00 3.56
7886 10855 7.148356 CGTATCATCATATCAGGTTGGGAAATG 60.148 40.741 0.00 0.00 0.00 2.32
7887 10856 6.881065 CGTATCATCATATCAGGTTGGGAAAT 59.119 38.462 0.00 0.00 0.00 2.17
7888 10857 6.042666 TCGTATCATCATATCAGGTTGGGAAA 59.957 38.462 0.00 0.00 0.00 3.13
7889 10858 5.542251 TCGTATCATCATATCAGGTTGGGAA 59.458 40.000 0.00 0.00 0.00 3.97
7911 10880 4.514577 AACCATCGCCGCCTCTCG 62.515 66.667 0.00 0.00 38.08 4.04
7931 10948 1.429463 GAGCGTGACGTCTTCCAATT 58.571 50.000 17.92 0.00 0.00 2.32
7938 10955 4.702081 GTGGCGAGCGTGACGTCT 62.702 66.667 17.92 4.05 36.31 4.18
8095 11112 1.228124 CGATCTCTCCCTCGCTCCT 60.228 63.158 0.00 0.00 0.00 3.69
8131 11152 2.278792 CGTGCCGATCGATCTGCA 60.279 61.111 32.43 32.43 43.24 4.41
8143 11164 3.011760 CTTTCTTCGCGGTCGTGCC 62.012 63.158 6.13 0.00 36.96 5.01
8146 11167 0.663568 CTCACTTTCTTCGCGGTCGT 60.664 55.000 6.13 0.00 36.96 4.34
8171 11196 2.510874 CGACTCGAGTCTAACAGCAAG 58.489 52.381 35.60 17.83 42.66 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.