Multiple sequence alignment - TraesCS4B01G206400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G206400 chr4B 100.000 4208 0 0 1552 5759 438606544 438602337 0.000000e+00 7771.0
1 TraesCS4B01G206400 chr4B 100.000 1304 0 0 1 1304 438608095 438606792 0.000000e+00 2409.0
2 TraesCS4B01G206400 chr4B 93.333 45 2 1 5576 5620 29672171 29672128 1.340000e-06 65.8
3 TraesCS4B01G206400 chr4B 85.714 56 5 2 486 538 109439176 109439231 8.060000e-04 56.5
4 TraesCS4B01G206400 chr4D 96.525 2619 70 16 3145 5758 355283563 355280961 0.000000e+00 4313.0
5 TraesCS4B01G206400 chr4D 96.675 1173 32 3 1552 2723 355285406 355284240 0.000000e+00 1943.0
6 TraesCS4B01G206400 chr4D 97.345 452 5 3 2723 3167 355284180 355283729 0.000000e+00 761.0
7 TraesCS4B01G206400 chr4D 93.676 253 12 4 983 1233 354890718 354890468 5.450000e-100 375.0
8 TraesCS4B01G206400 chr4D 99.324 148 1 0 1157 1304 355285618 355285471 9.510000e-68 268.0
9 TraesCS4B01G206400 chr4A 91.248 2148 166 13 3053 5189 109790068 109792204 0.000000e+00 2905.0
10 TraesCS4B01G206400 chr4A 86.447 760 69 21 1552 2284 109788033 109788785 0.000000e+00 802.0
11 TraesCS4B01G206400 chr4A 96.095 461 8 5 852 1303 109787490 109787949 0.000000e+00 743.0
12 TraesCS4B01G206400 chr4A 93.281 253 13 4 983 1233 109843129 109843379 2.530000e-98 370.0
13 TraesCS4B01G206400 chr4A 95.283 106 5 0 590 695 109786511 109786616 9.920000e-38 169.0
14 TraesCS4B01G206400 chr4A 81.560 141 10 7 721 854 109787097 109787228 1.020000e-17 102.0
15 TraesCS4B01G206400 chr2A 81.117 1504 278 3 3188 4689 734595291 734596790 0.000000e+00 1199.0
16 TraesCS4B01G206400 chr2A 80.883 1517 242 28 3207 4689 734586438 734587940 0.000000e+00 1151.0
17 TraesCS4B01G206400 chr2A 78.456 557 97 13 1 552 362402774 362402236 5.530000e-90 342.0
18 TraesCS4B01G206400 chr2A 88.931 262 23 6 1016 1276 734593710 734593966 9.310000e-83 318.0
19 TraesCS4B01G206400 chr2A 76.267 434 90 10 1 432 170093215 170093637 9.720000e-53 219.0
20 TraesCS4B01G206400 chr2B 81.123 1531 253 20 3188 4689 731250930 731252453 0.000000e+00 1194.0
21 TraesCS4B01G206400 chr2B 84.127 126 18 2 5350 5474 570658206 570658082 2.820000e-23 121.0
22 TraesCS4B01G206400 chr2B 81.452 124 18 4 5357 5479 693142502 693142383 4.750000e-16 97.1
23 TraesCS4B01G206400 chr2D 80.757 1533 255 22 3188 4689 601109021 601110544 0.000000e+00 1160.0
24 TraesCS4B01G206400 chr2D 89.069 247 22 1 1016 1257 601108204 601108450 9.380000e-78 302.0
25 TraesCS4B01G206400 chr2D 100.000 32 0 0 5583 5614 6080509 6080540 6.230000e-05 60.2
26 TraesCS4B01G206400 chr2D 90.909 44 4 0 5583 5626 61969609 61969652 6.230000e-05 60.2
27 TraesCS4B01G206400 chr6A 74.633 1431 337 21 3206 4623 571031975 571030558 4.930000e-170 608.0
28 TraesCS4B01G206400 chr3D 74.592 1409 337 18 3213 4610 462851026 462852424 2.970000e-167 599.0
29 TraesCS4B01G206400 chr3D 74.592 1409 337 18 3213 4610 463191624 463190226 2.970000e-167 599.0
30 TraesCS4B01G206400 chr3D 95.238 42 2 0 5584 5625 546808786 546808827 3.720000e-07 67.6
31 TraesCS4B01G206400 chr6B 90.909 242 15 4 990 1225 647837360 647837120 9.310000e-83 318.0
32 TraesCS4B01G206400 chr6B 89.020 255 19 7 984 1232 647588874 647589125 2.020000e-79 307.0
33 TraesCS4B01G206400 chr6B 89.344 244 21 3 994 1233 647691032 647691274 9.380000e-78 302.0
34 TraesCS4B01G206400 chr6B 100.000 32 0 0 5583 5614 413466619 413466588 6.230000e-05 60.2
35 TraesCS4B01G206400 chr6D 88.672 256 20 6 984 1233 429666501 429666753 2.610000e-78 303.0
36 TraesCS4B01G206400 chr6D 100.000 33 0 0 501 533 405581470 405581502 1.730000e-05 62.1
37 TraesCS4B01G206400 chr7B 77.626 438 83 10 1 435 424526902 424526477 9.580000e-63 252.0
38 TraesCS4B01G206400 chr3B 76.359 423 89 9 1 422 542208647 542209059 3.490000e-52 217.0
39 TraesCS4B01G206400 chr3B 92.424 66 3 2 469 533 361747659 361747723 6.140000e-15 93.5
40 TraesCS4B01G206400 chr3B 91.667 48 4 0 5578 5625 829272152 829272199 3.720000e-07 67.6
41 TraesCS4B01G206400 chr7D 78.226 124 26 1 5355 5478 491791216 491791338 1.720000e-10 78.7
42 TraesCS4B01G206400 chr7D 94.595 37 2 0 5589 5625 585376112 585376076 2.240000e-04 58.4
43 TraesCS4B01G206400 chr1A 86.111 72 6 3 469 536 263374264 263374335 2.230000e-09 75.0
44 TraesCS4B01G206400 chr7A 95.349 43 2 0 5583 5625 513208226 513208268 1.040000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G206400 chr4B 438602337 438608095 5758 True 5090.00 7771 100.00000 1 5759 2 chr4B.!!$R2 5758
1 TraesCS4B01G206400 chr4D 355280961 355285618 4657 True 1821.25 4313 97.46725 1157 5758 4 chr4D.!!$R2 4601
2 TraesCS4B01G206400 chr4A 109786511 109792204 5693 False 944.20 2905 90.12660 590 5189 5 chr4A.!!$F2 4599
3 TraesCS4B01G206400 chr2A 734586438 734587940 1502 False 1151.00 1151 80.88300 3207 4689 1 chr2A.!!$F2 1482
4 TraesCS4B01G206400 chr2A 734593710 734596790 3080 False 758.50 1199 85.02400 1016 4689 2 chr2A.!!$F3 3673
5 TraesCS4B01G206400 chr2A 362402236 362402774 538 True 342.00 342 78.45600 1 552 1 chr2A.!!$R1 551
6 TraesCS4B01G206400 chr2B 731250930 731252453 1523 False 1194.00 1194 81.12300 3188 4689 1 chr2B.!!$F1 1501
7 TraesCS4B01G206400 chr2D 601108204 601110544 2340 False 731.00 1160 84.91300 1016 4689 2 chr2D.!!$F3 3673
8 TraesCS4B01G206400 chr6A 571030558 571031975 1417 True 608.00 608 74.63300 3206 4623 1 chr6A.!!$R1 1417
9 TraesCS4B01G206400 chr3D 462851026 462852424 1398 False 599.00 599 74.59200 3213 4610 1 chr3D.!!$F1 1397
10 TraesCS4B01G206400 chr3D 463190226 463191624 1398 True 599.00 599 74.59200 3213 4610 1 chr3D.!!$R1 1397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.032540 GCCTTCCTTTTGTGCCACAG 59.967 55.000 0.00 0.00 0.00 3.66 F
235 236 0.032540 CCTTCCTTTTGTGCCACAGC 59.967 55.000 0.00 0.00 40.48 4.40 F
461 462 0.040603 ACAGAACCGACTCGAACGAC 60.041 55.000 12.18 4.94 0.00 4.34 F
462 463 1.058590 CAGAACCGACTCGAACGACG 61.059 60.000 12.18 0.00 44.09 5.12 F
713 924 1.196012 ATCCCTCGTTTGGTCCTCTC 58.804 55.000 0.00 0.00 0.00 3.20 F
900 1631 1.303236 CACCCATCACGGAGGCAAA 60.303 57.895 0.00 0.00 36.56 3.68 F
902 1633 1.303236 CCCATCACGGAGGCAAACA 60.303 57.895 0.00 0.00 36.56 2.83 F
1662 2401 1.603456 TTTGCTGGATTCTTCACGCA 58.397 45.000 0.00 0.00 0.00 5.24 F
2662 3671 3.123804 GCCACGTGTAGAGATTACATGG 58.876 50.000 15.65 6.93 38.42 3.66 F
3914 5610 2.849943 ACTTCTATGGCACCATTACCCA 59.150 45.455 7.63 0.00 37.82 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 2401 2.037511 TCCCGATGTACGAAACAGGTTT 59.962 45.455 0.00 0.00 42.70 3.27 R
1927 2718 2.098117 GCACAAGGATGATGGTACTTGC 59.902 50.000 0.00 0.00 42.63 4.01 R
2311 3138 0.179001 TGCATGGCCTGGATCTCATG 60.179 55.000 3.32 6.63 39.74 3.07 R
2562 3526 1.202417 ACGAGCACGAATGGGTATGAG 60.202 52.381 11.40 0.00 42.66 2.90 R
2662 3671 4.274950 TCACGAAAAGGAACAAATCTGGAC 59.725 41.667 0.00 0.00 0.00 4.02 R
2870 4020 1.798223 TCAACACGCCTCATTTTCGAG 59.202 47.619 0.00 0.00 0.00 4.04 R
2882 4032 5.741982 AGTTTACATCAACTTTTCAACACGC 59.258 36.000 0.00 0.00 32.81 5.34 R
3315 5007 4.263331 CCCCTGTACTTTACCACAATCAGT 60.263 45.833 0.00 0.00 0.00 3.41 R
4175 5871 1.072331 GGAGCAAGTCCTTCACCTTCA 59.928 52.381 0.00 0.00 42.99 3.02 R
5729 7497 0.106708 AGCATGAACACTGTCGTGGT 59.893 50.000 0.00 0.00 45.63 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.451150 TCCTAGGCCGCTTGCACG 62.451 66.667 2.96 0.00 43.89 5.34
18 19 4.760047 CCTAGGCCGCTTGCACGT 62.760 66.667 0.00 0.00 43.89 4.49
27 28 1.708027 GCTTGCACGTCGTGGATAC 59.292 57.895 25.70 14.51 33.22 2.24
37 38 1.520787 CGTGGATACGTGGCCTTCC 60.521 63.158 3.32 3.30 44.99 3.46
59 60 2.176546 CACACCGGATGCAAAGCG 59.823 61.111 9.46 0.00 0.00 4.68
60 61 2.031919 ACACCGGATGCAAAGCGA 59.968 55.556 9.46 0.00 0.00 4.93
61 62 1.599518 ACACCGGATGCAAAGCGAA 60.600 52.632 9.46 0.00 0.00 4.70
68 69 1.402852 GGATGCAAAGCGAAGGAAACC 60.403 52.381 0.00 0.00 0.00 3.27
69 70 1.269448 GATGCAAAGCGAAGGAAACCA 59.731 47.619 0.00 0.00 0.00 3.67
74 75 1.518903 AAGCGAAGGAAACCAGCAGC 61.519 55.000 0.00 0.00 0.00 5.25
82 83 2.748058 GAAACCAGCAGCCTTCCCGA 62.748 60.000 0.00 0.00 0.00 5.14
85 86 4.069232 CAGCAGCCTTCCCGACGA 62.069 66.667 0.00 0.00 0.00 4.20
88 89 2.202932 CAGCCTTCCCGACGATGG 60.203 66.667 0.00 0.00 38.56 3.51
93 94 3.006728 TTCCCGACGATGGCCCTT 61.007 61.111 0.00 0.00 0.00 3.95
94 95 1.682451 CTTCCCGACGATGGCCCTTA 61.682 60.000 0.00 0.00 0.00 2.69
97 98 2.279252 CGACGATGGCCCTTACGG 60.279 66.667 0.00 0.00 0.00 4.02
103 104 0.815615 GATGGCCCTTACGGAAGCAG 60.816 60.000 0.31 0.00 0.00 4.24
115 116 1.163554 GGAAGCAGTTGAAGCAGAGG 58.836 55.000 0.00 0.00 0.00 3.69
118 119 2.684843 GCAGTTGAAGCAGAGGCCG 61.685 63.158 0.00 0.00 42.56 6.13
149 150 3.956377 GGATCTCCCTCCGCTTCA 58.044 61.111 0.00 0.00 0.00 3.02
151 152 1.068921 GATCTCCCTCCGCTTCAGC 59.931 63.158 0.00 0.00 37.78 4.26
190 191 4.451150 GAGCATGACCGGACGCCA 62.451 66.667 9.46 0.00 0.00 5.69
191 192 4.760047 AGCATGACCGGACGCCAC 62.760 66.667 9.46 0.00 0.00 5.01
208 209 4.189188 CCCGCTGCTGCATGCTTC 62.189 66.667 20.33 10.87 43.37 3.86
209 210 4.189188 CCGCTGCTGCATGCTTCC 62.189 66.667 20.33 7.52 43.37 3.46
210 211 4.531912 CGCTGCTGCATGCTTCCG 62.532 66.667 20.33 10.41 43.37 4.30
211 212 3.129502 GCTGCTGCATGCTTCCGA 61.130 61.111 20.33 0.00 43.37 4.55
212 213 2.693762 GCTGCTGCATGCTTCCGAA 61.694 57.895 20.33 0.00 43.37 4.30
213 214 1.428219 CTGCTGCATGCTTCCGAAG 59.572 57.895 20.33 7.70 43.37 3.79
214 215 1.003476 TGCTGCATGCTTCCGAAGA 60.003 52.632 20.33 0.00 43.37 2.87
215 216 1.022982 TGCTGCATGCTTCCGAAGAG 61.023 55.000 20.33 6.13 43.37 2.85
216 217 1.720301 CTGCATGCTTCCGAAGAGC 59.280 57.895 20.33 11.92 40.53 4.09
217 218 1.712977 CTGCATGCTTCCGAAGAGCC 61.713 60.000 20.33 0.00 39.38 4.70
218 219 1.451028 GCATGCTTCCGAAGAGCCT 60.451 57.895 11.37 0.00 39.38 4.58
219 220 1.028868 GCATGCTTCCGAAGAGCCTT 61.029 55.000 11.37 0.00 39.38 4.35
220 221 1.012841 CATGCTTCCGAAGAGCCTTC 58.987 55.000 12.54 5.20 39.38 3.46
221 222 0.107459 ATGCTTCCGAAGAGCCTTCC 60.107 55.000 12.54 0.00 39.38 3.46
222 223 1.194781 TGCTTCCGAAGAGCCTTCCT 61.195 55.000 12.54 0.00 39.38 3.36
223 224 0.035915 GCTTCCGAAGAGCCTTCCTT 60.036 55.000 12.54 0.00 34.06 3.36
224 225 1.611936 GCTTCCGAAGAGCCTTCCTTT 60.612 52.381 12.54 0.00 34.06 3.11
225 226 2.784347 CTTCCGAAGAGCCTTCCTTTT 58.216 47.619 1.51 0.00 0.00 2.27
226 227 2.185004 TCCGAAGAGCCTTCCTTTTG 57.815 50.000 8.72 0.00 0.00 2.44
227 228 1.420138 TCCGAAGAGCCTTCCTTTTGT 59.580 47.619 8.72 0.00 0.00 2.83
228 229 1.537202 CCGAAGAGCCTTCCTTTTGTG 59.463 52.381 8.72 0.00 0.00 3.33
229 230 1.068954 CGAAGAGCCTTCCTTTTGTGC 60.069 52.381 8.72 0.00 0.00 4.57
230 231 1.270826 GAAGAGCCTTCCTTTTGTGCC 59.729 52.381 4.16 0.00 0.00 5.01
231 232 0.185901 AGAGCCTTCCTTTTGTGCCA 59.814 50.000 0.00 0.00 0.00 4.92
232 233 0.315251 GAGCCTTCCTTTTGTGCCAC 59.685 55.000 0.00 0.00 0.00 5.01
233 234 0.396974 AGCCTTCCTTTTGTGCCACA 60.397 50.000 0.00 0.00 0.00 4.17
234 235 0.032540 GCCTTCCTTTTGTGCCACAG 59.967 55.000 0.00 0.00 0.00 3.66
235 236 0.032540 CCTTCCTTTTGTGCCACAGC 59.967 55.000 0.00 0.00 40.48 4.40
236 237 0.318107 CTTCCTTTTGTGCCACAGCG 60.318 55.000 0.00 0.00 44.31 5.18
243 244 3.730761 GTGCCACAGCGCCTTGAG 61.731 66.667 2.29 0.00 44.01 3.02
278 279 4.030452 GCCACGGCACAGCAGAAC 62.030 66.667 2.36 0.00 41.49 3.01
279 280 3.357079 CCACGGCACAGCAGAACC 61.357 66.667 0.00 0.00 0.00 3.62
280 281 3.357079 CACGGCACAGCAGAACCC 61.357 66.667 0.00 0.00 0.00 4.11
281 282 4.988598 ACGGCACAGCAGAACCCG 62.989 66.667 0.00 0.00 44.19 5.28
327 328 4.335647 CGCACCTCCAGCCTTGGT 62.336 66.667 0.00 0.00 45.26 3.67
328 329 2.360475 GCACCTCCAGCCTTGGTC 60.360 66.667 0.00 0.00 45.26 4.02
329 330 2.046892 CACCTCCAGCCTTGGTCG 60.047 66.667 0.00 0.00 45.26 4.79
330 331 2.203788 ACCTCCAGCCTTGGTCGA 60.204 61.111 0.00 0.00 45.26 4.20
331 332 2.286523 ACCTCCAGCCTTGGTCGAG 61.287 63.158 0.00 0.00 45.26 4.04
332 333 1.984570 CCTCCAGCCTTGGTCGAGA 60.985 63.158 0.00 0.00 45.26 4.04
333 334 1.544825 CCTCCAGCCTTGGTCGAGAA 61.545 60.000 0.00 0.00 45.26 2.87
334 335 0.390472 CTCCAGCCTTGGTCGAGAAC 60.390 60.000 0.00 0.00 45.26 3.01
342 343 4.436368 GGTCGAGAACCCCTCAGA 57.564 61.111 0.00 0.00 42.85 3.27
343 344 2.903404 GGTCGAGAACCCCTCAGAT 58.097 57.895 0.00 0.00 42.85 2.90
344 345 0.747852 GGTCGAGAACCCCTCAGATC 59.252 60.000 0.00 0.00 42.85 2.75
345 346 0.747852 GTCGAGAACCCCTCAGATCC 59.252 60.000 0.00 0.00 42.06 3.36
346 347 0.335019 TCGAGAACCCCTCAGATCCA 59.665 55.000 0.00 0.00 42.06 3.41
347 348 0.749649 CGAGAACCCCTCAGATCCAG 59.250 60.000 0.00 0.00 42.06 3.86
348 349 1.686428 CGAGAACCCCTCAGATCCAGA 60.686 57.143 0.00 0.00 42.06 3.86
349 350 1.760029 GAGAACCCCTCAGATCCAGAC 59.240 57.143 0.00 0.00 41.58 3.51
350 351 0.461961 GAACCCCTCAGATCCAGACG 59.538 60.000 0.00 0.00 0.00 4.18
351 352 0.041238 AACCCCTCAGATCCAGACGA 59.959 55.000 0.00 0.00 0.00 4.20
352 353 0.684805 ACCCCTCAGATCCAGACGAC 60.685 60.000 0.00 0.00 0.00 4.34
353 354 1.395826 CCCCTCAGATCCAGACGACC 61.396 65.000 0.00 0.00 0.00 4.79
354 355 1.395826 CCCTCAGATCCAGACGACCC 61.396 65.000 0.00 0.00 0.00 4.46
355 356 1.729470 CCTCAGATCCAGACGACCCG 61.729 65.000 0.00 0.00 0.00 5.28
356 357 1.729470 CTCAGATCCAGACGACCCGG 61.729 65.000 0.00 0.00 0.00 5.73
357 358 1.753078 CAGATCCAGACGACCCGGA 60.753 63.158 0.73 0.00 0.00 5.14
358 359 1.753463 AGATCCAGACGACCCGGAC 60.753 63.158 0.73 0.00 0.00 4.79
359 360 2.036731 ATCCAGACGACCCGGACA 59.963 61.111 0.73 0.00 0.00 4.02
360 361 1.601419 GATCCAGACGACCCGGACAA 61.601 60.000 0.73 0.00 0.00 3.18
361 362 1.885163 ATCCAGACGACCCGGACAAC 61.885 60.000 0.73 0.00 0.00 3.32
362 363 2.048503 CAGACGACCCGGACAACC 60.049 66.667 0.73 0.00 0.00 3.77
363 364 3.308705 AGACGACCCGGACAACCC 61.309 66.667 0.73 0.00 0.00 4.11
364 365 4.383861 GACGACCCGGACAACCCC 62.384 72.222 0.73 0.00 0.00 4.95
366 367 4.388499 CGACCCGGACAACCCCAG 62.388 72.222 0.73 0.00 0.00 4.45
367 368 4.029809 GACCCGGACAACCCCAGG 62.030 72.222 0.73 0.00 0.00 4.45
371 372 4.722700 CGGACAACCCCAGGCCAG 62.723 72.222 5.01 0.00 0.00 4.85
372 373 3.256960 GGACAACCCCAGGCCAGA 61.257 66.667 5.01 0.00 0.00 3.86
373 374 2.352805 GACAACCCCAGGCCAGAG 59.647 66.667 5.01 0.00 0.00 3.35
374 375 2.121963 ACAACCCCAGGCCAGAGA 60.122 61.111 5.01 0.00 0.00 3.10
375 376 2.352805 CAACCCCAGGCCAGAGAC 59.647 66.667 5.01 0.00 0.00 3.36
376 377 3.322466 AACCCCAGGCCAGAGACG 61.322 66.667 5.01 0.00 0.00 4.18
377 378 3.846405 AACCCCAGGCCAGAGACGA 62.846 63.158 5.01 0.00 0.00 4.20
378 379 2.765807 CCCCAGGCCAGAGACGAT 60.766 66.667 5.01 0.00 0.00 3.73
379 380 2.503061 CCCAGGCCAGAGACGATG 59.497 66.667 5.01 0.00 0.00 3.84
380 381 2.503061 CCAGGCCAGAGACGATGG 59.497 66.667 5.01 0.00 41.04 3.51
381 382 2.503061 CAGGCCAGAGACGATGGG 59.497 66.667 5.01 0.00 38.33 4.00
384 385 2.202987 GCCAGAGACGATGGGCTG 60.203 66.667 0.00 0.00 43.09 4.85
385 386 2.503061 CCAGAGACGATGGGCTGG 59.497 66.667 0.00 0.00 41.62 4.85
386 387 3.621225 CAGAGACGATGGGCTGGA 58.379 61.111 0.00 0.00 0.00 3.86
387 388 1.440893 CAGAGACGATGGGCTGGAG 59.559 63.158 0.00 0.00 0.00 3.86
388 389 2.107953 GAGACGATGGGCTGGAGC 59.892 66.667 0.00 0.00 41.14 4.70
398 399 3.005539 GCTGGAGCCTGGAGGACA 61.006 66.667 0.00 0.00 37.39 4.02
399 400 2.985456 CTGGAGCCTGGAGGACAC 59.015 66.667 0.00 0.00 37.39 3.67
400 401 2.607750 TGGAGCCTGGAGGACACC 60.608 66.667 0.00 0.00 37.39 4.16
401 402 3.775654 GGAGCCTGGAGGACACCG 61.776 72.222 0.00 0.00 37.39 4.94
402 403 2.680352 GAGCCTGGAGGACACCGA 60.680 66.667 0.00 0.00 37.39 4.69
403 404 2.997897 AGCCTGGAGGACACCGAC 60.998 66.667 0.00 0.00 37.39 4.79
404 405 4.436998 GCCTGGAGGACACCGACG 62.437 72.222 0.00 0.00 37.39 5.12
405 406 4.436998 CCTGGAGGACACCGACGC 62.437 72.222 0.00 0.00 37.39 5.19
406 407 4.436998 CTGGAGGACACCGACGCC 62.437 72.222 0.00 0.00 0.00 5.68
442 443 4.424711 GCCATGGCGGAACCCTCA 62.425 66.667 23.48 0.00 37.83 3.86
443 444 2.438434 CCATGGCGGAACCCTCAC 60.438 66.667 0.00 0.00 37.83 3.51
444 445 2.350895 CATGGCGGAACCCTCACA 59.649 61.111 0.00 0.00 37.83 3.58
445 446 1.746615 CATGGCGGAACCCTCACAG 60.747 63.158 0.00 0.00 37.83 3.66
446 447 1.918293 ATGGCGGAACCCTCACAGA 60.918 57.895 0.00 0.00 37.83 3.41
447 448 1.488705 ATGGCGGAACCCTCACAGAA 61.489 55.000 0.00 0.00 37.83 3.02
448 449 1.671379 GGCGGAACCCTCACAGAAC 60.671 63.158 0.00 0.00 0.00 3.01
449 450 1.671379 GCGGAACCCTCACAGAACC 60.671 63.158 0.00 0.00 0.00 3.62
450 451 1.374252 CGGAACCCTCACAGAACCG 60.374 63.158 0.00 0.00 0.00 4.44
451 452 1.812686 CGGAACCCTCACAGAACCGA 61.813 60.000 0.00 0.00 41.09 4.69
452 453 0.320508 GGAACCCTCACAGAACCGAC 60.321 60.000 0.00 0.00 0.00 4.79
453 454 0.680061 GAACCCTCACAGAACCGACT 59.320 55.000 0.00 0.00 0.00 4.18
454 455 0.680061 AACCCTCACAGAACCGACTC 59.320 55.000 0.00 0.00 0.00 3.36
455 456 1.213013 CCCTCACAGAACCGACTCG 59.787 63.158 0.00 0.00 0.00 4.18
456 457 1.241990 CCCTCACAGAACCGACTCGA 61.242 60.000 0.00 0.00 0.00 4.04
457 458 0.596577 CCTCACAGAACCGACTCGAA 59.403 55.000 0.00 0.00 0.00 3.71
458 459 1.666311 CCTCACAGAACCGACTCGAAC 60.666 57.143 0.00 0.00 0.00 3.95
459 460 0.040692 TCACAGAACCGACTCGAACG 60.041 55.000 0.00 4.96 0.00 3.95
460 461 0.040692 CACAGAACCGACTCGAACGA 60.041 55.000 12.18 0.00 0.00 3.85
461 462 0.040603 ACAGAACCGACTCGAACGAC 60.041 55.000 12.18 4.94 0.00 4.34
462 463 1.058590 CAGAACCGACTCGAACGACG 61.059 60.000 12.18 0.00 44.09 5.12
465 466 3.425713 CCGACTCGAACGACGGGA 61.426 66.667 15.12 0.00 46.62 5.14
466 467 2.758089 CCGACTCGAACGACGGGAT 61.758 63.158 15.12 0.00 46.62 3.85
467 468 1.582937 CGACTCGAACGACGGGATG 60.583 63.158 12.59 2.26 46.62 3.51
468 469 1.872679 GACTCGAACGACGGGATGC 60.873 63.158 12.59 0.25 46.62 3.91
469 470 2.949678 CTCGAACGACGGGATGCG 60.950 66.667 0.00 0.00 46.62 4.73
506 507 3.827898 CGGCGAGAGAGGGTGGAC 61.828 72.222 0.00 0.00 0.00 4.02
507 508 3.827898 GGCGAGAGAGGGTGGACG 61.828 72.222 0.00 0.00 0.00 4.79
508 509 4.500116 GCGAGAGAGGGTGGACGC 62.500 72.222 0.00 0.00 39.33 5.19
509 510 3.827898 CGAGAGAGGGTGGACGCC 61.828 72.222 0.00 0.00 0.00 5.68
510 511 3.827898 GAGAGAGGGTGGACGCCG 61.828 72.222 0.00 0.00 0.00 6.46
543 544 4.148825 CCGGCGGAGGAGAAGGTG 62.149 72.222 24.41 0.00 0.00 4.00
544 545 4.148825 CGGCGGAGGAGAAGGTGG 62.149 72.222 0.00 0.00 0.00 4.61
545 546 2.683933 GGCGGAGGAGAAGGTGGA 60.684 66.667 0.00 0.00 0.00 4.02
546 547 2.579738 GCGGAGGAGAAGGTGGAC 59.420 66.667 0.00 0.00 0.00 4.02
547 548 2.283529 GCGGAGGAGAAGGTGGACA 61.284 63.158 0.00 0.00 0.00 4.02
548 549 1.592223 CGGAGGAGAAGGTGGACAC 59.408 63.158 0.00 0.00 0.00 3.67
558 559 4.629523 GTGGACACCGGCGGGAAA 62.630 66.667 31.78 7.97 36.97 3.13
559 560 4.323477 TGGACACCGGCGGGAAAG 62.323 66.667 31.78 18.67 36.97 2.62
565 566 4.547367 CCGGCGGGAAAGGGCTAG 62.547 72.222 20.56 0.00 34.06 3.42
566 567 4.547367 CGGCGGGAAAGGGCTAGG 62.547 72.222 0.00 0.00 0.00 3.02
567 568 4.191015 GGCGGGAAAGGGCTAGGG 62.191 72.222 0.00 0.00 0.00 3.53
568 569 4.191015 GCGGGAAAGGGCTAGGGG 62.191 72.222 0.00 0.00 0.00 4.79
569 570 2.366435 CGGGAAAGGGCTAGGGGA 60.366 66.667 0.00 0.00 0.00 4.81
570 571 1.999002 CGGGAAAGGGCTAGGGGAA 60.999 63.158 0.00 0.00 0.00 3.97
571 572 1.923586 GGGAAAGGGCTAGGGGAAG 59.076 63.158 0.00 0.00 0.00 3.46
572 573 1.646367 GGGAAAGGGCTAGGGGAAGG 61.646 65.000 0.00 0.00 0.00 3.46
573 574 1.646367 GGAAAGGGCTAGGGGAAGGG 61.646 65.000 0.00 0.00 0.00 3.95
574 575 1.622752 AAAGGGCTAGGGGAAGGGG 60.623 63.158 0.00 0.00 0.00 4.79
575 576 4.845307 AGGGCTAGGGGAAGGGGC 62.845 72.222 0.00 0.00 0.00 5.80
576 577 4.845307 GGGCTAGGGGAAGGGGCT 62.845 72.222 0.00 0.00 0.00 5.19
577 578 3.172106 GGCTAGGGGAAGGGGCTC 61.172 72.222 0.00 0.00 0.00 4.70
578 579 3.551407 GCTAGGGGAAGGGGCTCG 61.551 72.222 0.00 0.00 0.00 5.03
579 580 3.551407 CTAGGGGAAGGGGCTCGC 61.551 72.222 0.00 0.00 0.00 5.03
580 581 4.089757 TAGGGGAAGGGGCTCGCT 62.090 66.667 0.00 0.00 0.00 4.93
599 600 3.194861 GCTCGCTGGTATATCAAACACA 58.805 45.455 0.00 0.00 0.00 3.72
631 632 5.075493 AGAAAAGTGACATGGCAGATCTTT 58.925 37.500 0.00 5.55 0.00 2.52
662 663 3.422417 TTCATGCCGAAAAACGAACAA 57.578 38.095 0.00 0.00 45.77 2.83
678 679 2.900122 ACAATTGAATCAGCGTTCGG 57.100 45.000 13.59 0.00 0.00 4.30
702 913 4.681835 CGAGATCGTTATAATCCCTCGT 57.318 45.455 15.25 0.00 37.74 4.18
711 922 3.840124 ATAATCCCTCGTTTGGTCCTC 57.160 47.619 0.00 0.00 0.00 3.71
712 923 1.657804 AATCCCTCGTTTGGTCCTCT 58.342 50.000 0.00 0.00 0.00 3.69
713 924 1.196012 ATCCCTCGTTTGGTCCTCTC 58.804 55.000 0.00 0.00 0.00 3.20
718 929 3.211045 CCTCGTTTGGTCCTCTCAAAAA 58.789 45.455 0.00 0.00 36.11 1.94
726 1182 5.567037 TGGTCCTCTCAAAAATGAAGAGA 57.433 39.130 0.31 0.00 36.95 3.10
750 1206 1.871039 CCCGTACGCATTTCCCAATAG 59.129 52.381 10.49 0.00 0.00 1.73
751 1207 2.484065 CCCGTACGCATTTCCCAATAGA 60.484 50.000 10.49 0.00 0.00 1.98
752 1208 3.399330 CCGTACGCATTTCCCAATAGAT 58.601 45.455 10.49 0.00 0.00 1.98
753 1209 3.432252 CCGTACGCATTTCCCAATAGATC 59.568 47.826 10.49 0.00 0.00 2.75
755 1211 4.690748 CGTACGCATTTCCCAATAGATCAT 59.309 41.667 0.52 0.00 0.00 2.45
756 1212 5.179368 CGTACGCATTTCCCAATAGATCATT 59.821 40.000 0.52 0.00 0.00 2.57
758 1214 6.560253 ACGCATTTCCCAATAGATCATTAC 57.440 37.500 0.00 0.00 0.00 1.89
759 1215 5.179368 ACGCATTTCCCAATAGATCATTACG 59.821 40.000 0.00 0.00 0.00 3.18
760 1216 5.408299 CGCATTTCCCAATAGATCATTACGA 59.592 40.000 0.00 0.00 0.00 3.43
761 1217 6.092670 CGCATTTCCCAATAGATCATTACGAT 59.907 38.462 0.00 0.00 36.91 3.73
762 1218 7.277760 CGCATTTCCCAATAGATCATTACGATA 59.722 37.037 0.00 0.00 33.17 2.92
763 1219 8.946085 GCATTTCCCAATAGATCATTACGATAA 58.054 33.333 0.00 0.00 33.17 1.75
765 1221 8.842358 TTTCCCAATAGATCATTACGATAACC 57.158 34.615 0.00 0.00 33.17 2.85
766 1222 6.627243 TCCCAATAGATCATTACGATAACCG 58.373 40.000 0.00 0.00 45.44 4.44
767 1223 5.291128 CCCAATAGATCATTACGATAACCGC 59.709 44.000 0.00 0.00 43.32 5.68
768 1224 6.100004 CCAATAGATCATTACGATAACCGCT 58.900 40.000 0.00 0.00 43.32 5.52
769 1225 6.590292 CCAATAGATCATTACGATAACCGCTT 59.410 38.462 0.00 0.00 43.32 4.68
774 1230 4.489249 ACGATAACCGCTTCGTGG 57.511 55.556 0.00 0.00 46.03 4.94
782 1238 1.523711 CCGCTTCGTGGCATGGTAT 60.524 57.895 6.90 0.00 0.00 2.73
790 1246 1.466950 CGTGGCATGGTATCGTGTTTT 59.533 47.619 0.00 0.00 32.65 2.43
791 1247 2.095466 CGTGGCATGGTATCGTGTTTTT 60.095 45.455 0.00 0.00 32.65 1.94
874 1597 1.990060 CCTCCGCCTCTTCCCTTCA 60.990 63.158 0.00 0.00 0.00 3.02
900 1631 1.303236 CACCCATCACGGAGGCAAA 60.303 57.895 0.00 0.00 36.56 3.68
901 1632 1.303317 ACCCATCACGGAGGCAAAC 60.303 57.895 0.00 0.00 36.56 2.93
902 1633 1.303236 CCCATCACGGAGGCAAACA 60.303 57.895 0.00 0.00 36.56 2.83
944 1675 5.009854 TCCAAAGTTCAAAAAGAGCAAGG 57.990 39.130 0.00 0.00 0.00 3.61
1005 1737 2.125512 GTTGTCGCGGAGATGGCT 60.126 61.111 6.13 0.00 0.00 4.75
1007 1739 4.819761 TGTCGCGGAGATGGCTGC 62.820 66.667 6.13 0.00 36.81 5.25
1613 2352 8.109560 TGCTTACCCTAAAATACCCTAGAAAT 57.890 34.615 0.00 0.00 0.00 2.17
1662 2401 1.603456 TTTGCTGGATTCTTCACGCA 58.397 45.000 0.00 0.00 0.00 5.24
1867 2648 5.207033 GCCAGCAATTTTGAAAAACATGAC 58.793 37.500 0.00 0.00 0.00 3.06
1937 2730 4.692155 GGTAACGTAACAAGCAAGTACCAT 59.308 41.667 0.00 0.00 0.00 3.55
2083 2880 5.571784 AATTGTGTTACAGCCTGATGATG 57.428 39.130 0.00 0.00 0.00 3.07
2201 3028 7.484993 TGTGGTTACTTCTTACCAGCTTATA 57.515 36.000 0.00 0.00 44.66 0.98
2202 3029 8.086143 TGTGGTTACTTCTTACCAGCTTATAT 57.914 34.615 0.00 0.00 44.66 0.86
2203 3030 9.204337 TGTGGTTACTTCTTACCAGCTTATATA 57.796 33.333 0.00 0.00 44.66 0.86
2662 3671 3.123804 GCCACGTGTAGAGATTACATGG 58.876 50.000 15.65 6.93 38.42 3.66
2870 4020 7.448469 AGTTGTACCATATCCCTGATTTTATGC 59.552 37.037 0.00 0.00 0.00 3.14
2882 4032 6.204359 CCTGATTTTATGCTCGAAAATGAGG 58.796 40.000 16.16 16.16 45.18 3.86
3914 5610 2.849943 ACTTCTATGGCACCATTACCCA 59.150 45.455 7.63 0.00 37.82 4.51
4175 5871 0.036952 CTCAGTGGCGAATGTGACCT 60.037 55.000 0.00 0.00 0.00 3.85
5023 6759 5.888161 AGTTCAGTTGGTTTGTGAGATTTCT 59.112 36.000 0.00 0.00 0.00 2.52
5034 6770 4.307432 TGTGAGATTTCTGTCTCGGTTTC 58.693 43.478 0.00 0.00 46.04 2.78
5137 6880 2.770164 AATTTCCGTCTCTGGTGAGG 57.230 50.000 0.00 0.00 40.58 3.86
5211 6954 3.221771 TGCAACTCCTTATGTGCAAACT 58.778 40.909 0.00 0.00 0.00 2.66
5245 6988 5.053145 CAGTGGCTGAACCTTGTAGATATC 58.947 45.833 0.00 0.00 40.22 1.63
5272 7015 3.008330 CTGATGCCTTTTCTGTCTCTGG 58.992 50.000 0.00 0.00 0.00 3.86
5274 7017 0.603707 TGCCTTTTCTGTCTCTGGCG 60.604 55.000 0.00 0.00 42.87 5.69
5344 7087 3.508845 AACAAGTAGGTTGATGCCTGT 57.491 42.857 0.00 0.00 38.60 4.00
5389 7132 4.142359 TGACCTTTTTGCGAAAGTTTAGCA 60.142 37.500 18.03 18.03 39.33 3.49
5399 7142 4.617223 GCGAAAGTTTAGCAAGATTTGACC 59.383 41.667 14.90 0.00 0.00 4.02
5401 7144 6.080406 CGAAAGTTTAGCAAGATTTGACCTC 58.920 40.000 0.00 0.00 0.00 3.85
5439 7182 4.022676 TCGGAATTTGACCTTTTTGCTACC 60.023 41.667 0.00 0.00 0.00 3.18
5440 7183 4.234574 GGAATTTGACCTTTTTGCTACCG 58.765 43.478 0.00 0.00 0.00 4.02
5441 7184 4.261867 GGAATTTGACCTTTTTGCTACCGT 60.262 41.667 0.00 0.00 0.00 4.83
5442 7185 4.929819 ATTTGACCTTTTTGCTACCGTT 57.070 36.364 0.00 0.00 0.00 4.44
5443 7186 6.394025 AATTTGACCTTTTTGCTACCGTTA 57.606 33.333 0.00 0.00 0.00 3.18
5444 7187 5.427036 TTTGACCTTTTTGCTACCGTTAG 57.573 39.130 0.00 0.00 0.00 2.34
5445 7188 3.404899 TGACCTTTTTGCTACCGTTAGG 58.595 45.455 0.00 0.00 45.13 2.69
5446 7189 2.745821 GACCTTTTTGCTACCGTTAGGG 59.254 50.000 0.00 0.00 43.47 3.53
5455 7198 4.704007 CCGTTAGGGTCGATGACG 57.296 61.111 0.00 0.00 41.26 4.35
5456 7199 1.065273 CCGTTAGGGTCGATGACGG 59.935 63.158 6.48 6.48 45.86 4.79
5457 7200 1.660560 CCGTTAGGGTCGATGACGGT 61.661 60.000 11.50 0.00 45.94 4.83
5458 7201 1.016627 CGTTAGGGTCGATGACGGTA 58.983 55.000 0.00 0.00 40.21 4.02
5459 7202 1.003116 CGTTAGGGTCGATGACGGTAG 60.003 57.143 0.00 0.00 40.21 3.18
5460 7203 1.336125 GTTAGGGTCGATGACGGTAGG 59.664 57.143 0.00 0.00 40.21 3.18
5461 7204 0.179009 TAGGGTCGATGACGGTAGGG 60.179 60.000 0.00 0.00 40.21 3.53
5462 7205 1.755783 GGGTCGATGACGGTAGGGT 60.756 63.158 0.00 0.00 40.21 4.34
5463 7206 0.466189 GGGTCGATGACGGTAGGGTA 60.466 60.000 0.00 0.00 40.21 3.69
5464 7207 0.665298 GGTCGATGACGGTAGGGTAC 59.335 60.000 0.00 0.00 40.21 3.34
5465 7208 1.382522 GTCGATGACGGTAGGGTACA 58.617 55.000 0.00 0.00 40.21 2.90
5466 7209 1.745087 GTCGATGACGGTAGGGTACAA 59.255 52.381 0.00 0.00 40.21 2.41
5467 7210 1.745087 TCGATGACGGTAGGGTACAAC 59.255 52.381 0.00 0.00 40.21 3.32
5468 7211 1.473677 CGATGACGGTAGGGTACAACA 59.526 52.381 0.00 0.00 35.72 3.33
5469 7212 2.479049 CGATGACGGTAGGGTACAACAG 60.479 54.545 0.00 0.00 35.72 3.16
5470 7213 0.604578 TGACGGTAGGGTACAACAGC 59.395 55.000 0.00 0.00 0.00 4.40
5471 7214 0.108472 GACGGTAGGGTACAACAGCC 60.108 60.000 0.00 0.00 45.89 4.85
5476 7219 4.926207 GGGTACAACAGCCTACCG 57.074 61.111 0.00 0.00 41.95 4.02
5477 7220 1.449070 GGGTACAACAGCCTACCGC 60.449 63.158 0.00 0.00 41.95 5.68
5478 7221 1.449070 GGTACAACAGCCTACCGCC 60.449 63.158 0.00 0.00 38.78 6.13
5511 7254 2.558378 GTAGCAAACGGGTTAGATCCC 58.442 52.381 0.00 0.00 43.78 3.85
5523 7290 5.225642 GGGTTAGATCCCGAAATACTTACG 58.774 45.833 0.00 0.00 37.93 3.18
5544 7311 1.622811 GATGGGGTCAGATCCAGCTAG 59.377 57.143 0.94 0.00 36.59 3.42
5575 7343 5.901336 GCAAAAATGTCAAAACACGGAAATC 59.099 36.000 0.00 0.00 38.48 2.17
5589 7357 1.641577 GAAATCGAGGGTCCTTGACG 58.358 55.000 9.01 0.08 39.08 4.35
5622 7390 2.417516 CTACCGCCATCGACCCTG 59.582 66.667 0.00 0.00 38.10 4.45
5634 7402 0.605319 CGACCCTGGCACTTTAGCAA 60.605 55.000 0.00 0.00 35.83 3.91
5636 7404 1.960689 GACCCTGGCACTTTAGCAAAA 59.039 47.619 0.00 0.00 35.83 2.44
5644 7412 5.049167 TGGCACTTTAGCAAAAATGTCAAG 58.951 37.500 0.00 0.00 33.85 3.02
5663 7431 0.804989 GACACGGAAATTGGCTCCTG 59.195 55.000 0.00 0.00 0.00 3.86
5713 7481 2.878520 GCTGCGAGCGAGTCTGTC 60.879 66.667 0.00 0.00 0.00 3.51
5714 7482 2.874019 CTGCGAGCGAGTCTGTCT 59.126 61.111 0.00 0.00 0.00 3.41
5715 7483 1.513800 CTGCGAGCGAGTCTGTCTG 60.514 63.158 0.00 0.00 0.00 3.51
5716 7484 2.878520 GCGAGCGAGTCTGTCTGC 60.879 66.667 0.00 0.00 0.00 4.26
5717 7485 2.874019 CGAGCGAGTCTGTCTGCT 59.126 61.111 0.00 0.00 41.11 4.24
5718 7486 1.513800 CGAGCGAGTCTGTCTGCTG 60.514 63.158 0.00 0.00 37.91 4.41
5719 7487 1.805134 GAGCGAGTCTGTCTGCTGC 60.805 63.158 0.00 0.00 37.91 5.25
5720 7488 2.211619 GAGCGAGTCTGTCTGCTGCT 62.212 60.000 0.00 0.00 37.91 4.24
5721 7489 2.093473 GCGAGTCTGTCTGCTGCTG 61.093 63.158 0.00 0.00 0.00 4.41
5722 7490 2.093473 CGAGTCTGTCTGCTGCTGC 61.093 63.158 8.89 8.89 40.20 5.25
5732 7500 4.063529 GCTGCTGCAAGTGTACCA 57.936 55.556 11.11 0.00 39.41 3.25
5735 7503 0.599991 CTGCTGCAAGTGTACCACGA 60.600 55.000 3.02 0.00 39.64 4.35
5736 7504 0.878523 TGCTGCAAGTGTACCACGAC 60.879 55.000 0.00 0.00 39.64 4.34
5737 7505 0.878523 GCTGCAAGTGTACCACGACA 60.879 55.000 0.00 0.00 39.64 4.35
5738 7506 1.139989 CTGCAAGTGTACCACGACAG 58.860 55.000 0.00 0.00 39.64 3.51
5739 7507 0.462375 TGCAAGTGTACCACGACAGT 59.538 50.000 0.00 0.00 39.64 3.55
5747 7518 1.459592 GTACCACGACAGTGTTCATGC 59.540 52.381 0.00 0.00 46.56 4.06
5758 7529 2.954318 AGTGTTCATGCTGCAAAAGACT 59.046 40.909 18.77 18.77 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.462047 CTGGAAGGCCACGTATCCAC 60.462 60.000 5.01 2.22 39.92 4.02
22 23 4.857251 CTGGAAGGCCACGTATCC 57.143 61.111 5.01 5.01 39.92 2.59
34 35 2.933287 ATCCGGTGTGGCCTGGAA 60.933 61.111 3.32 0.00 41.07 3.53
37 38 4.720902 TGCATCCGGTGTGGCCTG 62.721 66.667 3.32 0.00 37.80 4.85
40 41 2.568090 CTTTGCATCCGGTGTGGC 59.432 61.111 0.00 1.58 37.80 5.01
59 60 0.884514 GAAGGCTGCTGGTTTCCTTC 59.115 55.000 10.45 10.45 45.11 3.46
60 61 0.540597 GGAAGGCTGCTGGTTTCCTT 60.541 55.000 14.11 0.84 41.27 3.36
61 62 1.075659 GGAAGGCTGCTGGTTTCCT 59.924 57.895 14.11 0.00 36.88 3.36
68 69 3.376935 ATCGTCGGGAAGGCTGCTG 62.377 63.158 0.00 0.00 0.00 4.41
69 70 3.077556 ATCGTCGGGAAGGCTGCT 61.078 61.111 0.00 0.00 0.00 4.24
74 75 4.547367 GGGCCATCGTCGGGAAGG 62.547 72.222 4.39 0.00 36.57 3.46
93 94 1.343142 TCTGCTTCAACTGCTTCCGTA 59.657 47.619 0.00 0.00 0.00 4.02
94 95 0.106708 TCTGCTTCAACTGCTTCCGT 59.893 50.000 0.00 0.00 0.00 4.69
97 98 0.520847 GCCTCTGCTTCAACTGCTTC 59.479 55.000 0.00 0.00 33.53 3.86
103 104 0.884704 TGTTCGGCCTCTGCTTCAAC 60.885 55.000 0.00 0.00 37.74 3.18
118 119 3.735037 GATCCCGGCGGACCTGTTC 62.735 68.421 30.79 11.26 42.48 3.18
132 133 1.745264 CTGAAGCGGAGGGAGATCC 59.255 63.158 0.00 0.00 35.88 3.36
173 174 4.451150 TGGCGTCCGGTCATGCTC 62.451 66.667 0.00 0.00 0.00 4.26
174 175 4.760047 GTGGCGTCCGGTCATGCT 62.760 66.667 0.00 0.00 29.50 3.79
197 198 1.720301 CTCTTCGGAAGCATGCAGC 59.280 57.895 21.98 10.95 46.19 5.25
198 199 1.712977 GGCTCTTCGGAAGCATGCAG 61.713 60.000 21.98 7.33 0.00 4.41
199 200 1.746615 GGCTCTTCGGAAGCATGCA 60.747 57.895 21.98 0.00 0.00 3.96
200 201 1.028868 AAGGCTCTTCGGAAGCATGC 61.029 55.000 10.51 10.51 0.00 4.06
201 202 1.012841 GAAGGCTCTTCGGAAGCATG 58.987 55.000 12.90 6.83 0.00 4.06
202 203 0.107459 GGAAGGCTCTTCGGAAGCAT 60.107 55.000 12.90 0.00 0.00 3.79
203 204 1.194781 AGGAAGGCTCTTCGGAAGCA 61.195 55.000 12.90 1.85 0.00 3.91
204 205 0.035915 AAGGAAGGCTCTTCGGAAGC 60.036 55.000 12.90 2.92 0.00 3.86
205 206 2.481289 AAAGGAAGGCTCTTCGGAAG 57.519 50.000 11.54 11.54 0.00 3.46
206 207 2.158667 ACAAAAGGAAGGCTCTTCGGAA 60.159 45.455 8.31 0.00 0.00 4.30
207 208 1.420138 ACAAAAGGAAGGCTCTTCGGA 59.580 47.619 8.31 0.00 0.00 4.55
208 209 1.537202 CACAAAAGGAAGGCTCTTCGG 59.463 52.381 8.31 0.00 0.00 4.30
209 210 1.068954 GCACAAAAGGAAGGCTCTTCG 60.069 52.381 8.31 0.00 0.00 3.79
210 211 1.270826 GGCACAAAAGGAAGGCTCTTC 59.729 52.381 6.43 6.43 0.00 2.87
211 212 1.332195 GGCACAAAAGGAAGGCTCTT 58.668 50.000 0.00 0.00 0.00 2.85
212 213 0.185901 TGGCACAAAAGGAAGGCTCT 59.814 50.000 0.00 0.00 31.92 4.09
213 214 0.315251 GTGGCACAAAAGGAAGGCTC 59.685 55.000 13.86 0.00 44.16 4.70
214 215 0.396974 TGTGGCACAAAAGGAAGGCT 60.397 50.000 19.74 0.00 44.16 4.58
215 216 0.032540 CTGTGGCACAAAAGGAAGGC 59.967 55.000 22.31 0.00 44.16 4.35
216 217 0.032540 GCTGTGGCACAAAAGGAAGG 59.967 55.000 22.31 8.29 44.16 3.46
217 218 0.318107 CGCTGTGGCACAAAAGGAAG 60.318 55.000 22.31 9.05 44.16 3.46
218 219 1.732917 CGCTGTGGCACAAAAGGAA 59.267 52.632 22.31 0.00 44.16 3.36
219 220 2.844451 GCGCTGTGGCACAAAAGGA 61.844 57.895 22.31 0.00 44.16 3.36
220 221 2.355009 GCGCTGTGGCACAAAAGG 60.355 61.111 22.31 10.95 44.16 3.11
221 222 2.355009 GGCGCTGTGGCACAAAAG 60.355 61.111 22.31 15.76 44.16 2.27
261 262 4.030452 GTTCTGCTGTGCCGTGGC 62.030 66.667 3.30 3.30 42.35 5.01
262 263 3.357079 GGTTCTGCTGTGCCGTGG 61.357 66.667 0.00 0.00 0.00 4.94
263 264 3.357079 GGGTTCTGCTGTGCCGTG 61.357 66.667 0.00 0.00 0.00 4.94
264 265 4.988598 CGGGTTCTGCTGTGCCGT 62.989 66.667 0.00 0.00 0.00 5.68
310 311 4.335647 ACCAAGGCTGGAGGTGCG 62.336 66.667 9.53 0.00 46.92 5.34
311 312 2.360475 GACCAAGGCTGGAGGTGC 60.360 66.667 10.80 1.02 46.92 5.01
312 313 2.046892 CGACCAAGGCTGGAGGTG 60.047 66.667 10.80 0.00 46.92 4.00
313 314 2.203788 TCGACCAAGGCTGGAGGT 60.204 61.111 6.28 6.28 46.92 3.85
314 315 1.544825 TTCTCGACCAAGGCTGGAGG 61.545 60.000 9.53 4.87 46.92 4.30
315 316 0.390472 GTTCTCGACCAAGGCTGGAG 60.390 60.000 9.53 2.55 46.92 3.86
316 317 1.671742 GTTCTCGACCAAGGCTGGA 59.328 57.895 9.53 0.00 46.92 3.86
326 327 0.747852 GGATCTGAGGGGTTCTCGAC 59.252 60.000 0.00 0.00 45.32 4.20
327 328 0.335019 TGGATCTGAGGGGTTCTCGA 59.665 55.000 0.00 0.00 45.32 4.04
328 329 0.749649 CTGGATCTGAGGGGTTCTCG 59.250 60.000 0.00 0.00 45.32 4.04
329 330 1.760029 GTCTGGATCTGAGGGGTTCTC 59.240 57.143 0.00 0.00 42.74 2.87
330 331 1.872773 GTCTGGATCTGAGGGGTTCT 58.127 55.000 0.00 0.00 0.00 3.01
331 332 0.461961 CGTCTGGATCTGAGGGGTTC 59.538 60.000 0.00 0.00 0.00 3.62
332 333 0.041238 TCGTCTGGATCTGAGGGGTT 59.959 55.000 0.00 0.00 0.00 4.11
333 334 0.684805 GTCGTCTGGATCTGAGGGGT 60.685 60.000 0.00 0.00 0.00 4.95
334 335 1.395826 GGTCGTCTGGATCTGAGGGG 61.396 65.000 0.00 0.00 0.00 4.79
335 336 1.395826 GGGTCGTCTGGATCTGAGGG 61.396 65.000 0.00 0.00 0.00 4.30
336 337 1.729470 CGGGTCGTCTGGATCTGAGG 61.729 65.000 0.00 0.00 33.67 3.86
337 338 1.729470 CCGGGTCGTCTGGATCTGAG 61.729 65.000 0.00 0.00 44.90 3.35
338 339 1.753078 CCGGGTCGTCTGGATCTGA 60.753 63.158 0.00 0.00 44.90 3.27
339 340 1.753078 TCCGGGTCGTCTGGATCTG 60.753 63.158 0.00 0.00 45.65 2.90
340 341 2.681591 TCCGGGTCGTCTGGATCT 59.318 61.111 0.00 0.00 45.65 2.75
344 345 2.048503 GTTGTCCGGGTCGTCTGG 60.049 66.667 0.00 0.91 43.43 3.86
345 346 2.048503 GGTTGTCCGGGTCGTCTG 60.049 66.667 0.00 0.00 0.00 3.51
346 347 3.308705 GGGTTGTCCGGGTCGTCT 61.309 66.667 0.00 0.00 33.83 4.18
347 348 4.383861 GGGGTTGTCCGGGTCGTC 62.384 72.222 0.00 0.00 36.01 4.20
349 350 4.388499 CTGGGGTTGTCCGGGTCG 62.388 72.222 0.00 0.00 36.01 4.79
350 351 4.029809 CCTGGGGTTGTCCGGGTC 62.030 72.222 0.00 0.00 46.04 4.46
354 355 4.722700 CTGGCCTGGGGTTGTCCG 62.723 72.222 3.32 0.00 36.01 4.79
355 356 3.256960 TCTGGCCTGGGGTTGTCC 61.257 66.667 10.07 0.00 0.00 4.02
356 357 2.224159 TCTCTGGCCTGGGGTTGTC 61.224 63.158 9.99 0.00 0.00 3.18
357 358 2.121963 TCTCTGGCCTGGGGTTGT 60.122 61.111 9.99 0.00 0.00 3.32
358 359 2.352805 GTCTCTGGCCTGGGGTTG 59.647 66.667 9.99 0.00 0.00 3.77
359 360 3.322466 CGTCTCTGGCCTGGGGTT 61.322 66.667 9.99 0.00 0.00 4.11
360 361 3.625632 ATCGTCTCTGGCCTGGGGT 62.626 63.158 9.99 0.00 0.00 4.95
361 362 2.765807 ATCGTCTCTGGCCTGGGG 60.766 66.667 9.99 0.00 0.00 4.96
362 363 2.503061 CATCGTCTCTGGCCTGGG 59.497 66.667 10.07 6.46 0.00 4.45
363 364 2.503061 CCATCGTCTCTGGCCTGG 59.497 66.667 10.07 0.00 0.00 4.45
364 365 2.503061 CCCATCGTCTCTGGCCTG 59.497 66.667 3.32 2.92 32.08 4.85
365 366 3.474570 GCCCATCGTCTCTGGCCT 61.475 66.667 3.32 0.00 37.94 5.19
366 367 3.474570 AGCCCATCGTCTCTGGCC 61.475 66.667 0.00 0.00 45.14 5.36
367 368 2.202987 CAGCCCATCGTCTCTGGC 60.203 66.667 0.00 0.00 44.35 4.85
368 369 2.025767 CTCCAGCCCATCGTCTCTGG 62.026 65.000 0.92 0.92 45.59 3.86
369 370 1.440893 CTCCAGCCCATCGTCTCTG 59.559 63.158 0.00 0.00 0.00 3.35
370 371 2.430610 GCTCCAGCCCATCGTCTCT 61.431 63.158 0.00 0.00 34.31 3.10
371 372 2.107953 GCTCCAGCCCATCGTCTC 59.892 66.667 0.00 0.00 34.31 3.36
381 382 3.005539 TGTCCTCCAGGCTCCAGC 61.006 66.667 0.00 0.00 41.14 4.85
382 383 2.664081 GGTGTCCTCCAGGCTCCAG 61.664 68.421 0.00 0.00 34.44 3.86
383 384 2.607750 GGTGTCCTCCAGGCTCCA 60.608 66.667 0.00 0.00 34.44 3.86
384 385 3.775654 CGGTGTCCTCCAGGCTCC 61.776 72.222 0.00 0.00 34.44 4.70
385 386 2.680352 TCGGTGTCCTCCAGGCTC 60.680 66.667 0.00 0.00 34.44 4.70
386 387 2.997897 GTCGGTGTCCTCCAGGCT 60.998 66.667 0.00 0.00 34.44 4.58
387 388 4.436998 CGTCGGTGTCCTCCAGGC 62.437 72.222 0.00 0.00 34.44 4.85
388 389 4.436998 GCGTCGGTGTCCTCCAGG 62.437 72.222 0.00 0.00 0.00 4.45
389 390 4.436998 GGCGTCGGTGTCCTCCAG 62.437 72.222 0.00 0.00 0.00 3.86
425 426 4.424711 TGAGGGTTCCGCCATGGC 62.425 66.667 27.67 27.67 39.65 4.40
426 427 2.438434 GTGAGGGTTCCGCCATGG 60.438 66.667 7.63 7.63 39.65 3.66
427 428 1.746615 CTGTGAGGGTTCCGCCATG 60.747 63.158 0.00 0.00 39.65 3.66
428 429 1.488705 TTCTGTGAGGGTTCCGCCAT 61.489 55.000 0.00 0.00 39.65 4.40
429 430 2.144078 TTCTGTGAGGGTTCCGCCA 61.144 57.895 0.00 0.00 39.65 5.69
430 431 1.671379 GTTCTGTGAGGGTTCCGCC 60.671 63.158 0.00 0.00 0.00 6.13
431 432 1.671379 GGTTCTGTGAGGGTTCCGC 60.671 63.158 0.00 0.00 0.00 5.54
432 433 1.374252 CGGTTCTGTGAGGGTTCCG 60.374 63.158 0.00 0.00 0.00 4.30
433 434 0.320508 GTCGGTTCTGTGAGGGTTCC 60.321 60.000 0.00 0.00 0.00 3.62
434 435 0.680061 AGTCGGTTCTGTGAGGGTTC 59.320 55.000 0.00 0.00 0.00 3.62
435 436 0.680061 GAGTCGGTTCTGTGAGGGTT 59.320 55.000 0.00 0.00 0.00 4.11
436 437 1.524863 CGAGTCGGTTCTGTGAGGGT 61.525 60.000 4.10 0.00 0.00 4.34
437 438 1.213013 CGAGTCGGTTCTGTGAGGG 59.787 63.158 4.10 0.00 0.00 4.30
438 439 0.596577 TTCGAGTCGGTTCTGTGAGG 59.403 55.000 13.54 0.00 0.00 3.86
439 440 1.687628 GTTCGAGTCGGTTCTGTGAG 58.312 55.000 13.54 0.00 0.00 3.51
440 441 0.040692 CGTTCGAGTCGGTTCTGTGA 60.041 55.000 13.54 0.00 0.00 3.58
441 442 0.040692 TCGTTCGAGTCGGTTCTGTG 60.041 55.000 13.54 0.00 0.00 3.66
442 443 0.040603 GTCGTTCGAGTCGGTTCTGT 60.041 55.000 13.54 0.00 0.00 3.41
443 444 1.058590 CGTCGTTCGAGTCGGTTCTG 61.059 60.000 13.54 0.00 42.86 3.02
444 445 1.206072 CGTCGTTCGAGTCGGTTCT 59.794 57.895 13.54 0.00 42.86 3.01
445 446 1.795177 CCGTCGTTCGAGTCGGTTC 60.795 63.158 13.54 2.78 42.86 3.62
446 447 2.253452 CCGTCGTTCGAGTCGGTT 59.747 61.111 13.54 0.00 42.86 4.44
447 448 3.730761 CCCGTCGTTCGAGTCGGT 61.731 66.667 13.54 0.00 40.31 4.69
448 449 2.758089 ATCCCGTCGTTCGAGTCGG 61.758 63.158 13.54 14.33 42.86 4.79
449 450 1.582937 CATCCCGTCGTTCGAGTCG 60.583 63.158 6.09 6.09 42.86 4.18
450 451 1.872679 GCATCCCGTCGTTCGAGTC 60.873 63.158 0.00 0.00 42.86 3.36
451 452 2.181021 GCATCCCGTCGTTCGAGT 59.819 61.111 0.00 0.00 42.86 4.18
452 453 2.949678 CGCATCCCGTCGTTCGAG 60.950 66.667 0.00 0.00 42.86 4.04
489 490 3.827898 GTCCACCCTCTCTCGCCG 61.828 72.222 0.00 0.00 0.00 6.46
490 491 3.827898 CGTCCACCCTCTCTCGCC 61.828 72.222 0.00 0.00 0.00 5.54
491 492 4.500116 GCGTCCACCCTCTCTCGC 62.500 72.222 0.00 0.00 37.17 5.03
492 493 3.827898 GGCGTCCACCCTCTCTCG 61.828 72.222 0.00 0.00 0.00 4.04
493 494 3.827898 CGGCGTCCACCCTCTCTC 61.828 72.222 0.00 0.00 0.00 3.20
526 527 4.148825 CACCTTCTCCTCCGCCGG 62.149 72.222 0.00 0.00 0.00 6.13
527 528 4.148825 CCACCTTCTCCTCCGCCG 62.149 72.222 0.00 0.00 0.00 6.46
528 529 2.683933 TCCACCTTCTCCTCCGCC 60.684 66.667 0.00 0.00 0.00 6.13
529 530 2.283529 TGTCCACCTTCTCCTCCGC 61.284 63.158 0.00 0.00 0.00 5.54
530 531 1.592223 GTGTCCACCTTCTCCTCCG 59.408 63.158 0.00 0.00 0.00 4.63
541 542 4.629523 TTTCCCGCCGGTGTCCAC 62.630 66.667 15.14 0.00 0.00 4.02
542 543 4.323477 CTTTCCCGCCGGTGTCCA 62.323 66.667 15.14 0.00 0.00 4.02
548 549 4.547367 CTAGCCCTTTCCCGCCGG 62.547 72.222 0.00 0.00 0.00 6.13
549 550 4.547367 CCTAGCCCTTTCCCGCCG 62.547 72.222 0.00 0.00 0.00 6.46
550 551 4.191015 CCCTAGCCCTTTCCCGCC 62.191 72.222 0.00 0.00 0.00 6.13
551 552 4.191015 CCCCTAGCCCTTTCCCGC 62.191 72.222 0.00 0.00 0.00 6.13
552 553 1.984288 CTTCCCCTAGCCCTTTCCCG 61.984 65.000 0.00 0.00 0.00 5.14
553 554 1.646367 CCTTCCCCTAGCCCTTTCCC 61.646 65.000 0.00 0.00 0.00 3.97
554 555 1.646367 CCCTTCCCCTAGCCCTTTCC 61.646 65.000 0.00 0.00 0.00 3.13
555 556 1.646367 CCCCTTCCCCTAGCCCTTTC 61.646 65.000 0.00 0.00 0.00 2.62
556 557 1.622752 CCCCTTCCCCTAGCCCTTT 60.623 63.158 0.00 0.00 0.00 3.11
557 558 2.044620 CCCCTTCCCCTAGCCCTT 59.955 66.667 0.00 0.00 0.00 3.95
558 559 4.845307 GCCCCTTCCCCTAGCCCT 62.845 72.222 0.00 0.00 0.00 5.19
559 560 4.845307 AGCCCCTTCCCCTAGCCC 62.845 72.222 0.00 0.00 0.00 5.19
560 561 3.172106 GAGCCCCTTCCCCTAGCC 61.172 72.222 0.00 0.00 0.00 3.93
561 562 3.551407 CGAGCCCCTTCCCCTAGC 61.551 72.222 0.00 0.00 0.00 3.42
562 563 3.551407 GCGAGCCCCTTCCCCTAG 61.551 72.222 0.00 0.00 0.00 3.02
563 564 4.089757 AGCGAGCCCCTTCCCCTA 62.090 66.667 0.00 0.00 0.00 3.53
572 573 1.878656 ATATACCAGCGAGCGAGCCC 61.879 60.000 2.87 0.00 38.01 5.19
573 574 0.456995 GATATACCAGCGAGCGAGCC 60.457 60.000 2.87 0.00 38.01 4.70
574 575 0.241213 TGATATACCAGCGAGCGAGC 59.759 55.000 0.00 0.00 37.41 5.03
575 576 2.706555 TTGATATACCAGCGAGCGAG 57.293 50.000 0.00 0.00 0.00 5.03
576 577 2.100087 TGTTTGATATACCAGCGAGCGA 59.900 45.455 0.00 0.00 0.00 4.93
577 578 2.218759 GTGTTTGATATACCAGCGAGCG 59.781 50.000 0.00 0.00 0.00 5.03
578 579 3.194861 TGTGTTTGATATACCAGCGAGC 58.805 45.455 0.00 0.00 0.00 5.03
579 580 5.220662 CCTTTGTGTTTGATATACCAGCGAG 60.221 44.000 0.00 0.00 0.00 5.03
580 581 4.634004 CCTTTGTGTTTGATATACCAGCGA 59.366 41.667 0.00 0.00 0.00 4.93
581 582 4.634004 TCCTTTGTGTTTGATATACCAGCG 59.366 41.667 0.00 0.00 0.00 5.18
582 583 6.511767 CGATCCTTTGTGTTTGATATACCAGC 60.512 42.308 0.00 0.00 0.00 4.85
583 584 6.761242 TCGATCCTTTGTGTTTGATATACCAG 59.239 38.462 0.00 0.00 0.00 4.00
584 585 6.645306 TCGATCCTTTGTGTTTGATATACCA 58.355 36.000 0.00 0.00 0.00 3.25
585 586 6.984474 TCTCGATCCTTTGTGTTTGATATACC 59.016 38.462 0.00 0.00 0.00 2.73
586 587 8.420374 TTCTCGATCCTTTGTGTTTGATATAC 57.580 34.615 0.00 0.00 0.00 1.47
587 588 9.443323 TTTTCTCGATCCTTTGTGTTTGATATA 57.557 29.630 0.00 0.00 0.00 0.86
588 589 7.921786 TTTCTCGATCCTTTGTGTTTGATAT 57.078 32.000 0.00 0.00 0.00 1.63
599 600 4.697352 CCATGTCACTTTTCTCGATCCTTT 59.303 41.667 0.00 0.00 0.00 3.11
662 663 1.369625 GTCCCGAACGCTGATTCAAT 58.630 50.000 0.00 0.00 0.00 2.57
687 688 3.805971 GGACCAAACGAGGGATTATAACG 59.194 47.826 0.00 0.00 0.00 3.18
702 913 6.364701 TCTCTTCATTTTTGAGAGGACCAAA 58.635 36.000 0.00 0.00 33.53 3.28
711 922 4.757149 ACGGGTTCTCTCTTCATTTTTGAG 59.243 41.667 0.00 0.00 0.00 3.02
712 923 4.714632 ACGGGTTCTCTCTTCATTTTTGA 58.285 39.130 0.00 0.00 0.00 2.69
713 924 5.389516 CGTACGGGTTCTCTCTTCATTTTTG 60.390 44.000 7.57 0.00 0.00 2.44
718 929 1.134560 GCGTACGGGTTCTCTCTTCAT 59.865 52.381 18.39 0.00 0.00 2.57
726 1182 0.392060 GGGAAATGCGTACGGGTTCT 60.392 55.000 18.39 0.00 0.00 3.01
729 1185 0.034863 ATTGGGAAATGCGTACGGGT 60.035 50.000 18.39 0.00 0.00 5.28
730 1186 1.871039 CTATTGGGAAATGCGTACGGG 59.129 52.381 18.39 0.00 0.00 5.28
732 1188 4.055360 TGATCTATTGGGAAATGCGTACG 58.945 43.478 11.84 11.84 0.00 3.67
750 1206 4.547956 CGAAGCGGTTATCGTAATGATC 57.452 45.455 0.00 0.00 41.72 2.92
758 1214 1.151777 ATGCCACGAAGCGGTTATCG 61.152 55.000 0.00 3.05 44.33 2.92
759 1215 0.304705 CATGCCACGAAGCGGTTATC 59.695 55.000 0.00 0.00 34.65 1.75
760 1216 1.095228 CCATGCCACGAAGCGGTTAT 61.095 55.000 0.00 0.00 34.65 1.89
761 1217 1.743623 CCATGCCACGAAGCGGTTA 60.744 57.895 0.00 0.00 34.65 2.85
762 1218 2.457743 TACCATGCCACGAAGCGGTT 62.458 55.000 0.00 0.00 34.65 4.44
763 1219 2.252072 ATACCATGCCACGAAGCGGT 62.252 55.000 0.00 0.00 34.65 5.68
764 1220 1.498865 GATACCATGCCACGAAGCGG 61.499 60.000 0.00 0.00 34.65 5.52
765 1221 1.821241 CGATACCATGCCACGAAGCG 61.821 60.000 0.00 0.00 34.65 4.68
766 1222 0.810031 ACGATACCATGCCACGAAGC 60.810 55.000 0.00 0.00 0.00 3.86
767 1223 0.930310 CACGATACCATGCCACGAAG 59.070 55.000 0.00 0.00 0.00 3.79
768 1224 0.248012 ACACGATACCATGCCACGAA 59.752 50.000 0.00 0.00 0.00 3.85
769 1225 0.248012 AACACGATACCATGCCACGA 59.752 50.000 0.00 0.00 0.00 4.35
790 1246 7.867752 ACGAAGACGATCAAAGGAAAAATAAA 58.132 30.769 0.00 0.00 42.66 1.40
791 1247 7.429636 ACGAAGACGATCAAAGGAAAAATAA 57.570 32.000 0.00 0.00 42.66 1.40
792 1248 8.712285 ATACGAAGACGATCAAAGGAAAAATA 57.288 30.769 0.00 0.00 42.66 1.40
793 1249 5.941948 ACGAAGACGATCAAAGGAAAAAT 57.058 34.783 0.00 0.00 42.66 1.82
806 1262 4.530388 CGGCAATAGTTATACGAAGACGA 58.470 43.478 0.00 0.00 42.66 4.20
813 1269 3.655276 ACCTCCGGCAATAGTTATACG 57.345 47.619 0.00 0.00 0.00 3.06
845 1304 4.086706 AGAGGCGGAGGGTTAATAATTG 57.913 45.455 0.00 0.00 0.00 2.32
874 1597 1.374947 CGTGATGGGTGGGAACTGT 59.625 57.895 0.00 0.00 0.00 3.55
900 1631 0.769247 AGGGAAAGTTAAGGCGGTGT 59.231 50.000 0.00 0.00 0.00 4.16
901 1632 1.003233 AGAGGGAAAGTTAAGGCGGTG 59.997 52.381 0.00 0.00 0.00 4.94
902 1633 1.359168 AGAGGGAAAGTTAAGGCGGT 58.641 50.000 0.00 0.00 0.00 5.68
1613 2352 3.007182 AGGGTTTTGCAGCGTAGTAGTAA 59.993 43.478 0.00 0.00 0.00 2.24
1662 2401 2.037511 TCCCGATGTACGAAACAGGTTT 59.962 45.455 0.00 0.00 42.70 3.27
1867 2648 6.065153 CGTCTTCAGATTTTGTGTTAGAACG 58.935 40.000 0.00 0.00 0.00 3.95
1927 2718 2.098117 GCACAAGGATGATGGTACTTGC 59.902 50.000 0.00 0.00 42.63 4.01
1937 2730 4.068599 TCGTTATTGTTGCACAAGGATGA 58.931 39.130 7.58 6.57 41.94 2.92
2083 2880 9.220767 AGATCTGACAAATCCTACAGTTTTAAC 57.779 33.333 0.00 0.00 0.00 2.01
2300 3127 5.450137 GCCTGGATCTCATGTTGAAGAAATG 60.450 44.000 0.00 0.00 0.00 2.32
2301 3128 4.643784 GCCTGGATCTCATGTTGAAGAAAT 59.356 41.667 0.00 0.00 0.00 2.17
2302 3129 4.012374 GCCTGGATCTCATGTTGAAGAAA 58.988 43.478 0.00 0.00 0.00 2.52
2311 3138 0.179001 TGCATGGCCTGGATCTCATG 60.179 55.000 3.32 6.63 39.74 3.07
2562 3526 1.202417 ACGAGCACGAATGGGTATGAG 60.202 52.381 11.40 0.00 42.66 2.90
2645 3653 4.338400 TCTGGACCATGTAATCTCTACACG 59.662 45.833 0.00 0.00 0.00 4.49
2662 3671 4.274950 TCACGAAAAGGAACAAATCTGGAC 59.725 41.667 0.00 0.00 0.00 4.02
2870 4020 1.798223 TCAACACGCCTCATTTTCGAG 59.202 47.619 0.00 0.00 0.00 4.04
2882 4032 5.741982 AGTTTACATCAACTTTTCAACACGC 59.258 36.000 0.00 0.00 32.81 5.34
3315 5007 4.263331 CCCCTGTACTTTACCACAATCAGT 60.263 45.833 0.00 0.00 0.00 3.41
3914 5610 2.668550 GCTCCTCAAAACGGGCGT 60.669 61.111 0.00 0.00 0.00 5.68
4175 5871 1.072331 GGAGCAAGTCCTTCACCTTCA 59.928 52.381 0.00 0.00 42.99 3.02
4917 6651 8.097038 AGACATGCAACCGATATATAAGTTCAT 58.903 33.333 0.00 3.32 0.00 2.57
5124 6867 2.095532 CGTAGTAACCTCACCAGAGACG 59.904 54.545 0.00 0.00 44.98 4.18
5137 6880 7.007099 GCATTTTTATGTGTTGAGCGTAGTAAC 59.993 37.037 0.00 0.00 0.00 2.50
5211 6954 1.347378 TCAGCCACTGTTCTGTATGCA 59.653 47.619 0.00 0.00 32.61 3.96
5217 6960 1.605710 CAAGGTTCAGCCACTGTTCTG 59.394 52.381 0.00 1.54 40.61 3.02
5245 6988 4.999950 AGACAGAAAAGGCATCAGTACAAG 59.000 41.667 0.00 0.00 0.00 3.16
5272 7015 5.090652 TCATTAGATAAAAATGGCGACGC 57.909 39.130 12.43 12.43 35.48 5.19
5274 7017 9.599322 CTGTATTCATTAGATAAAAATGGCGAC 57.401 33.333 0.00 0.00 35.48 5.19
5304 7047 7.702348 ACTTGTTGAAATGTAAAAGTTCTCTGC 59.298 33.333 0.00 0.00 33.95 4.26
5344 7087 5.069648 TCAAAACACCAAAATCAGCCACATA 59.930 36.000 0.00 0.00 0.00 2.29
5389 7132 5.885465 ACTTTCAGATGGAGGTCAAATCTT 58.115 37.500 0.00 0.00 0.00 2.40
5394 7137 5.874810 CGAAATACTTTCAGATGGAGGTCAA 59.125 40.000 1.06 0.00 39.63 3.18
5399 7142 7.559590 AATTCCGAAATACTTTCAGATGGAG 57.440 36.000 1.06 0.00 39.63 3.86
5401 7144 7.698130 GTCAAATTCCGAAATACTTTCAGATGG 59.302 37.037 1.06 0.00 39.63 3.51
5420 7163 4.929819 ACGGTAGCAAAAAGGTCAAATT 57.070 36.364 0.00 0.00 0.00 1.82
5423 7166 3.816523 CCTAACGGTAGCAAAAAGGTCAA 59.183 43.478 0.59 0.00 0.00 3.18
5439 7182 1.003116 CTACCGTCATCGACCCTAACG 60.003 57.143 0.00 0.00 39.71 3.18
5440 7183 1.336125 CCTACCGTCATCGACCCTAAC 59.664 57.143 0.00 0.00 39.71 2.34
5441 7184 1.683943 CCTACCGTCATCGACCCTAA 58.316 55.000 0.00 0.00 39.71 2.69
5442 7185 0.179009 CCCTACCGTCATCGACCCTA 60.179 60.000 0.00 0.00 39.71 3.53
5443 7186 1.455217 CCCTACCGTCATCGACCCT 60.455 63.158 0.00 0.00 39.71 4.34
5444 7187 0.466189 TACCCTACCGTCATCGACCC 60.466 60.000 0.00 0.00 39.71 4.46
5445 7188 0.665298 GTACCCTACCGTCATCGACC 59.335 60.000 0.00 0.00 39.71 4.79
5446 7189 1.382522 TGTACCCTACCGTCATCGAC 58.617 55.000 0.00 0.00 39.71 4.20
5447 7190 1.745087 GTTGTACCCTACCGTCATCGA 59.255 52.381 0.00 0.00 39.71 3.59
5448 7191 1.473677 TGTTGTACCCTACCGTCATCG 59.526 52.381 0.00 0.00 0.00 3.84
5449 7192 2.737679 GCTGTTGTACCCTACCGTCATC 60.738 54.545 0.00 0.00 0.00 2.92
5450 7193 1.206371 GCTGTTGTACCCTACCGTCAT 59.794 52.381 0.00 0.00 0.00 3.06
5451 7194 0.604578 GCTGTTGTACCCTACCGTCA 59.395 55.000 0.00 0.00 0.00 4.35
5452 7195 0.108472 GGCTGTTGTACCCTACCGTC 60.108 60.000 0.00 0.00 0.00 4.79
5453 7196 0.543646 AGGCTGTTGTACCCTACCGT 60.544 55.000 0.00 0.00 0.00 4.83
5454 7197 1.135721 GTAGGCTGTTGTACCCTACCG 59.864 57.143 12.04 0.00 43.31 4.02
5455 7198 2.975732 GTAGGCTGTTGTACCCTACC 57.024 55.000 12.04 0.00 43.31 3.18
5456 7199 1.135721 CGGTAGGCTGTTGTACCCTAC 59.864 57.143 13.87 13.87 46.60 3.18
5457 7200 1.477553 CGGTAGGCTGTTGTACCCTA 58.522 55.000 0.00 0.00 36.12 3.53
5458 7201 1.896122 GCGGTAGGCTGTTGTACCCT 61.896 60.000 0.00 0.00 36.12 4.34
5459 7202 1.449070 GCGGTAGGCTGTTGTACCC 60.449 63.158 0.00 0.00 36.12 3.69
5460 7203 1.449070 GGCGGTAGGCTGTTGTACC 60.449 63.158 0.00 0.00 42.94 3.34
5461 7204 1.808390 CGGCGGTAGGCTGTTGTAC 60.808 63.158 0.00 0.00 43.36 2.90
5462 7205 2.574929 CGGCGGTAGGCTGTTGTA 59.425 61.111 0.00 0.00 43.36 2.41
5469 7212 4.171103 ATCAACCCGGCGGTAGGC 62.171 66.667 26.32 0.00 43.71 3.93
5470 7213 2.203015 CATCAACCCGGCGGTAGG 60.203 66.667 26.32 12.44 43.71 3.18
5471 7214 2.203015 CCATCAACCCGGCGGTAG 60.203 66.667 26.32 13.26 43.71 3.18
5472 7215 4.476752 GCCATCAACCCGGCGGTA 62.477 66.667 26.32 7.62 43.71 4.02
5476 7219 4.476752 TACCGCCATCAACCCGGC 62.477 66.667 0.00 0.00 45.58 6.13
5477 7220 2.203015 CTACCGCCATCAACCCGG 60.203 66.667 0.00 0.00 46.97 5.73
5478 7221 2.895372 GCTACCGCCATCAACCCG 60.895 66.667 0.00 0.00 0.00 5.28
5483 7226 1.743623 CCGTTTGCTACCGCCATCA 60.744 57.895 0.00 0.00 34.43 3.07
5491 7234 2.558378 GGGATCTAACCCGTTTGCTAC 58.442 52.381 0.00 0.00 40.49 3.58
5511 7254 3.181473 TGACCCCATCCGTAAGTATTTCG 60.181 47.826 0.00 0.00 38.66 3.46
5521 7288 1.002921 TGGATCTGACCCCATCCGT 59.997 57.895 0.00 0.00 41.55 4.69
5523 7290 1.059006 AGCTGGATCTGACCCCATCC 61.059 60.000 1.69 0.00 39.38 3.51
5544 7311 7.582319 CCGTGTTTTGACATTTTTGCTAAAATC 59.418 33.333 14.69 7.71 40.97 2.17
5575 7343 1.664321 CCTACCGTCAAGGACCCTCG 61.664 65.000 0.00 0.00 45.00 4.63
5622 7390 5.175673 GTCTTGACATTTTTGCTAAAGTGCC 59.824 40.000 14.25 5.89 35.15 5.01
5634 7402 5.288804 CCAATTTCCGTGTCTTGACATTTT 58.711 37.500 6.74 0.00 0.00 1.82
5636 7404 3.305335 GCCAATTTCCGTGTCTTGACATT 60.305 43.478 6.74 0.00 0.00 2.71
5644 7412 0.804989 CAGGAGCCAATTTCCGTGTC 59.195 55.000 0.00 0.00 39.77 3.67
5663 7431 2.273449 CCTGCTGGACCCACATCC 59.727 66.667 2.92 0.00 39.45 3.51
5715 7483 4.063529 TGGTACACTTGCAGCAGC 57.936 55.556 0.00 0.00 42.57 5.25
5726 7494 2.749776 CATGAACACTGTCGTGGTACA 58.250 47.619 0.00 0.00 42.25 2.90
5729 7497 0.106708 AGCATGAACACTGTCGTGGT 59.893 50.000 0.00 0.00 45.63 4.16
5730 7498 0.514255 CAGCATGAACACTGTCGTGG 59.486 55.000 0.00 0.00 41.96 4.94
5731 7499 0.110509 GCAGCATGAACACTGTCGTG 60.111 55.000 0.00 0.00 42.94 4.35
5732 7500 0.532640 TGCAGCATGAACACTGTCGT 60.533 50.000 0.00 0.00 39.69 4.34
5735 7503 2.689471 TCTTTTGCAGCATGAACACTGT 59.311 40.909 0.00 0.00 39.69 3.55
5736 7504 3.047796 GTCTTTTGCAGCATGAACACTG 58.952 45.455 0.00 0.00 39.69 3.66
5737 7505 2.954318 AGTCTTTTGCAGCATGAACACT 59.046 40.909 0.00 0.00 39.69 3.55
5738 7506 3.360249 AGTCTTTTGCAGCATGAACAC 57.640 42.857 0.00 0.00 39.69 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.