Multiple sequence alignment - TraesCS4B01G206400
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4B01G206400
chr4B
100.000
4208
0
0
1552
5759
438606544
438602337
0.000000e+00
7771.0
1
TraesCS4B01G206400
chr4B
100.000
1304
0
0
1
1304
438608095
438606792
0.000000e+00
2409.0
2
TraesCS4B01G206400
chr4B
93.333
45
2
1
5576
5620
29672171
29672128
1.340000e-06
65.8
3
TraesCS4B01G206400
chr4B
85.714
56
5
2
486
538
109439176
109439231
8.060000e-04
56.5
4
TraesCS4B01G206400
chr4D
96.525
2619
70
16
3145
5758
355283563
355280961
0.000000e+00
4313.0
5
TraesCS4B01G206400
chr4D
96.675
1173
32
3
1552
2723
355285406
355284240
0.000000e+00
1943.0
6
TraesCS4B01G206400
chr4D
97.345
452
5
3
2723
3167
355284180
355283729
0.000000e+00
761.0
7
TraesCS4B01G206400
chr4D
93.676
253
12
4
983
1233
354890718
354890468
5.450000e-100
375.0
8
TraesCS4B01G206400
chr4D
99.324
148
1
0
1157
1304
355285618
355285471
9.510000e-68
268.0
9
TraesCS4B01G206400
chr4A
91.248
2148
166
13
3053
5189
109790068
109792204
0.000000e+00
2905.0
10
TraesCS4B01G206400
chr4A
86.447
760
69
21
1552
2284
109788033
109788785
0.000000e+00
802.0
11
TraesCS4B01G206400
chr4A
96.095
461
8
5
852
1303
109787490
109787949
0.000000e+00
743.0
12
TraesCS4B01G206400
chr4A
93.281
253
13
4
983
1233
109843129
109843379
2.530000e-98
370.0
13
TraesCS4B01G206400
chr4A
95.283
106
5
0
590
695
109786511
109786616
9.920000e-38
169.0
14
TraesCS4B01G206400
chr4A
81.560
141
10
7
721
854
109787097
109787228
1.020000e-17
102.0
15
TraesCS4B01G206400
chr2A
81.117
1504
278
3
3188
4689
734595291
734596790
0.000000e+00
1199.0
16
TraesCS4B01G206400
chr2A
80.883
1517
242
28
3207
4689
734586438
734587940
0.000000e+00
1151.0
17
TraesCS4B01G206400
chr2A
78.456
557
97
13
1
552
362402774
362402236
5.530000e-90
342.0
18
TraesCS4B01G206400
chr2A
88.931
262
23
6
1016
1276
734593710
734593966
9.310000e-83
318.0
19
TraesCS4B01G206400
chr2A
76.267
434
90
10
1
432
170093215
170093637
9.720000e-53
219.0
20
TraesCS4B01G206400
chr2B
81.123
1531
253
20
3188
4689
731250930
731252453
0.000000e+00
1194.0
21
TraesCS4B01G206400
chr2B
84.127
126
18
2
5350
5474
570658206
570658082
2.820000e-23
121.0
22
TraesCS4B01G206400
chr2B
81.452
124
18
4
5357
5479
693142502
693142383
4.750000e-16
97.1
23
TraesCS4B01G206400
chr2D
80.757
1533
255
22
3188
4689
601109021
601110544
0.000000e+00
1160.0
24
TraesCS4B01G206400
chr2D
89.069
247
22
1
1016
1257
601108204
601108450
9.380000e-78
302.0
25
TraesCS4B01G206400
chr2D
100.000
32
0
0
5583
5614
6080509
6080540
6.230000e-05
60.2
26
TraesCS4B01G206400
chr2D
90.909
44
4
0
5583
5626
61969609
61969652
6.230000e-05
60.2
27
TraesCS4B01G206400
chr6A
74.633
1431
337
21
3206
4623
571031975
571030558
4.930000e-170
608.0
28
TraesCS4B01G206400
chr3D
74.592
1409
337
18
3213
4610
462851026
462852424
2.970000e-167
599.0
29
TraesCS4B01G206400
chr3D
74.592
1409
337
18
3213
4610
463191624
463190226
2.970000e-167
599.0
30
TraesCS4B01G206400
chr3D
95.238
42
2
0
5584
5625
546808786
546808827
3.720000e-07
67.6
31
TraesCS4B01G206400
chr6B
90.909
242
15
4
990
1225
647837360
647837120
9.310000e-83
318.0
32
TraesCS4B01G206400
chr6B
89.020
255
19
7
984
1232
647588874
647589125
2.020000e-79
307.0
33
TraesCS4B01G206400
chr6B
89.344
244
21
3
994
1233
647691032
647691274
9.380000e-78
302.0
34
TraesCS4B01G206400
chr6B
100.000
32
0
0
5583
5614
413466619
413466588
6.230000e-05
60.2
35
TraesCS4B01G206400
chr6D
88.672
256
20
6
984
1233
429666501
429666753
2.610000e-78
303.0
36
TraesCS4B01G206400
chr6D
100.000
33
0
0
501
533
405581470
405581502
1.730000e-05
62.1
37
TraesCS4B01G206400
chr7B
77.626
438
83
10
1
435
424526902
424526477
9.580000e-63
252.0
38
TraesCS4B01G206400
chr3B
76.359
423
89
9
1
422
542208647
542209059
3.490000e-52
217.0
39
TraesCS4B01G206400
chr3B
92.424
66
3
2
469
533
361747659
361747723
6.140000e-15
93.5
40
TraesCS4B01G206400
chr3B
91.667
48
4
0
5578
5625
829272152
829272199
3.720000e-07
67.6
41
TraesCS4B01G206400
chr7D
78.226
124
26
1
5355
5478
491791216
491791338
1.720000e-10
78.7
42
TraesCS4B01G206400
chr7D
94.595
37
2
0
5589
5625
585376112
585376076
2.240000e-04
58.4
43
TraesCS4B01G206400
chr1A
86.111
72
6
3
469
536
263374264
263374335
2.230000e-09
75.0
44
TraesCS4B01G206400
chr7A
95.349
43
2
0
5583
5625
513208226
513208268
1.040000e-07
69.4
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4B01G206400
chr4B
438602337
438608095
5758
True
5090.00
7771
100.00000
1
5759
2
chr4B.!!$R2
5758
1
TraesCS4B01G206400
chr4D
355280961
355285618
4657
True
1821.25
4313
97.46725
1157
5758
4
chr4D.!!$R2
4601
2
TraesCS4B01G206400
chr4A
109786511
109792204
5693
False
944.20
2905
90.12660
590
5189
5
chr4A.!!$F2
4599
3
TraesCS4B01G206400
chr2A
734586438
734587940
1502
False
1151.00
1151
80.88300
3207
4689
1
chr2A.!!$F2
1482
4
TraesCS4B01G206400
chr2A
734593710
734596790
3080
False
758.50
1199
85.02400
1016
4689
2
chr2A.!!$F3
3673
5
TraesCS4B01G206400
chr2A
362402236
362402774
538
True
342.00
342
78.45600
1
552
1
chr2A.!!$R1
551
6
TraesCS4B01G206400
chr2B
731250930
731252453
1523
False
1194.00
1194
81.12300
3188
4689
1
chr2B.!!$F1
1501
7
TraesCS4B01G206400
chr2D
601108204
601110544
2340
False
731.00
1160
84.91300
1016
4689
2
chr2D.!!$F3
3673
8
TraesCS4B01G206400
chr6A
571030558
571031975
1417
True
608.00
608
74.63300
3206
4623
1
chr6A.!!$R1
1417
9
TraesCS4B01G206400
chr3D
462851026
462852424
1398
False
599.00
599
74.59200
3213
4610
1
chr3D.!!$F1
1397
10
TraesCS4B01G206400
chr3D
463190226
463191624
1398
True
599.00
599
74.59200
3213
4610
1
chr3D.!!$R1
1397
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
234
235
0.032540
GCCTTCCTTTTGTGCCACAG
59.967
55.000
0.00
0.00
0.00
3.66
F
235
236
0.032540
CCTTCCTTTTGTGCCACAGC
59.967
55.000
0.00
0.00
40.48
4.40
F
461
462
0.040603
ACAGAACCGACTCGAACGAC
60.041
55.000
12.18
4.94
0.00
4.34
F
462
463
1.058590
CAGAACCGACTCGAACGACG
61.059
60.000
12.18
0.00
44.09
5.12
F
713
924
1.196012
ATCCCTCGTTTGGTCCTCTC
58.804
55.000
0.00
0.00
0.00
3.20
F
900
1631
1.303236
CACCCATCACGGAGGCAAA
60.303
57.895
0.00
0.00
36.56
3.68
F
902
1633
1.303236
CCCATCACGGAGGCAAACA
60.303
57.895
0.00
0.00
36.56
2.83
F
1662
2401
1.603456
TTTGCTGGATTCTTCACGCA
58.397
45.000
0.00
0.00
0.00
5.24
F
2662
3671
3.123804
GCCACGTGTAGAGATTACATGG
58.876
50.000
15.65
6.93
38.42
3.66
F
3914
5610
2.849943
ACTTCTATGGCACCATTACCCA
59.150
45.455
7.63
0.00
37.82
4.51
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1662
2401
2.037511
TCCCGATGTACGAAACAGGTTT
59.962
45.455
0.00
0.00
42.70
3.27
R
1927
2718
2.098117
GCACAAGGATGATGGTACTTGC
59.902
50.000
0.00
0.00
42.63
4.01
R
2311
3138
0.179001
TGCATGGCCTGGATCTCATG
60.179
55.000
3.32
6.63
39.74
3.07
R
2562
3526
1.202417
ACGAGCACGAATGGGTATGAG
60.202
52.381
11.40
0.00
42.66
2.90
R
2662
3671
4.274950
TCACGAAAAGGAACAAATCTGGAC
59.725
41.667
0.00
0.00
0.00
4.02
R
2870
4020
1.798223
TCAACACGCCTCATTTTCGAG
59.202
47.619
0.00
0.00
0.00
4.04
R
2882
4032
5.741982
AGTTTACATCAACTTTTCAACACGC
59.258
36.000
0.00
0.00
32.81
5.34
R
3315
5007
4.263331
CCCCTGTACTTTACCACAATCAGT
60.263
45.833
0.00
0.00
0.00
3.41
R
4175
5871
1.072331
GGAGCAAGTCCTTCACCTTCA
59.928
52.381
0.00
0.00
42.99
3.02
R
5729
7497
0.106708
AGCATGAACACTGTCGTGGT
59.893
50.000
0.00
0.00
45.63
4.16
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
17
18
4.451150
TCCTAGGCCGCTTGCACG
62.451
66.667
2.96
0.00
43.89
5.34
18
19
4.760047
CCTAGGCCGCTTGCACGT
62.760
66.667
0.00
0.00
43.89
4.49
27
28
1.708027
GCTTGCACGTCGTGGATAC
59.292
57.895
25.70
14.51
33.22
2.24
37
38
1.520787
CGTGGATACGTGGCCTTCC
60.521
63.158
3.32
3.30
44.99
3.46
59
60
2.176546
CACACCGGATGCAAAGCG
59.823
61.111
9.46
0.00
0.00
4.68
60
61
2.031919
ACACCGGATGCAAAGCGA
59.968
55.556
9.46
0.00
0.00
4.93
61
62
1.599518
ACACCGGATGCAAAGCGAA
60.600
52.632
9.46
0.00
0.00
4.70
68
69
1.402852
GGATGCAAAGCGAAGGAAACC
60.403
52.381
0.00
0.00
0.00
3.27
69
70
1.269448
GATGCAAAGCGAAGGAAACCA
59.731
47.619
0.00
0.00
0.00
3.67
74
75
1.518903
AAGCGAAGGAAACCAGCAGC
61.519
55.000
0.00
0.00
0.00
5.25
82
83
2.748058
GAAACCAGCAGCCTTCCCGA
62.748
60.000
0.00
0.00
0.00
5.14
85
86
4.069232
CAGCAGCCTTCCCGACGA
62.069
66.667
0.00
0.00
0.00
4.20
88
89
2.202932
CAGCCTTCCCGACGATGG
60.203
66.667
0.00
0.00
38.56
3.51
93
94
3.006728
TTCCCGACGATGGCCCTT
61.007
61.111
0.00
0.00
0.00
3.95
94
95
1.682451
CTTCCCGACGATGGCCCTTA
61.682
60.000
0.00
0.00
0.00
2.69
97
98
2.279252
CGACGATGGCCCTTACGG
60.279
66.667
0.00
0.00
0.00
4.02
103
104
0.815615
GATGGCCCTTACGGAAGCAG
60.816
60.000
0.31
0.00
0.00
4.24
115
116
1.163554
GGAAGCAGTTGAAGCAGAGG
58.836
55.000
0.00
0.00
0.00
3.69
118
119
2.684843
GCAGTTGAAGCAGAGGCCG
61.685
63.158
0.00
0.00
42.56
6.13
149
150
3.956377
GGATCTCCCTCCGCTTCA
58.044
61.111
0.00
0.00
0.00
3.02
151
152
1.068921
GATCTCCCTCCGCTTCAGC
59.931
63.158
0.00
0.00
37.78
4.26
190
191
4.451150
GAGCATGACCGGACGCCA
62.451
66.667
9.46
0.00
0.00
5.69
191
192
4.760047
AGCATGACCGGACGCCAC
62.760
66.667
9.46
0.00
0.00
5.01
208
209
4.189188
CCCGCTGCTGCATGCTTC
62.189
66.667
20.33
10.87
43.37
3.86
209
210
4.189188
CCGCTGCTGCATGCTTCC
62.189
66.667
20.33
7.52
43.37
3.46
210
211
4.531912
CGCTGCTGCATGCTTCCG
62.532
66.667
20.33
10.41
43.37
4.30
211
212
3.129502
GCTGCTGCATGCTTCCGA
61.130
61.111
20.33
0.00
43.37
4.55
212
213
2.693762
GCTGCTGCATGCTTCCGAA
61.694
57.895
20.33
0.00
43.37
4.30
213
214
1.428219
CTGCTGCATGCTTCCGAAG
59.572
57.895
20.33
7.70
43.37
3.79
214
215
1.003476
TGCTGCATGCTTCCGAAGA
60.003
52.632
20.33
0.00
43.37
2.87
215
216
1.022982
TGCTGCATGCTTCCGAAGAG
61.023
55.000
20.33
6.13
43.37
2.85
216
217
1.720301
CTGCATGCTTCCGAAGAGC
59.280
57.895
20.33
11.92
40.53
4.09
217
218
1.712977
CTGCATGCTTCCGAAGAGCC
61.713
60.000
20.33
0.00
39.38
4.70
218
219
1.451028
GCATGCTTCCGAAGAGCCT
60.451
57.895
11.37
0.00
39.38
4.58
219
220
1.028868
GCATGCTTCCGAAGAGCCTT
61.029
55.000
11.37
0.00
39.38
4.35
220
221
1.012841
CATGCTTCCGAAGAGCCTTC
58.987
55.000
12.54
5.20
39.38
3.46
221
222
0.107459
ATGCTTCCGAAGAGCCTTCC
60.107
55.000
12.54
0.00
39.38
3.46
222
223
1.194781
TGCTTCCGAAGAGCCTTCCT
61.195
55.000
12.54
0.00
39.38
3.36
223
224
0.035915
GCTTCCGAAGAGCCTTCCTT
60.036
55.000
12.54
0.00
34.06
3.36
224
225
1.611936
GCTTCCGAAGAGCCTTCCTTT
60.612
52.381
12.54
0.00
34.06
3.11
225
226
2.784347
CTTCCGAAGAGCCTTCCTTTT
58.216
47.619
1.51
0.00
0.00
2.27
226
227
2.185004
TCCGAAGAGCCTTCCTTTTG
57.815
50.000
8.72
0.00
0.00
2.44
227
228
1.420138
TCCGAAGAGCCTTCCTTTTGT
59.580
47.619
8.72
0.00
0.00
2.83
228
229
1.537202
CCGAAGAGCCTTCCTTTTGTG
59.463
52.381
8.72
0.00
0.00
3.33
229
230
1.068954
CGAAGAGCCTTCCTTTTGTGC
60.069
52.381
8.72
0.00
0.00
4.57
230
231
1.270826
GAAGAGCCTTCCTTTTGTGCC
59.729
52.381
4.16
0.00
0.00
5.01
231
232
0.185901
AGAGCCTTCCTTTTGTGCCA
59.814
50.000
0.00
0.00
0.00
4.92
232
233
0.315251
GAGCCTTCCTTTTGTGCCAC
59.685
55.000
0.00
0.00
0.00
5.01
233
234
0.396974
AGCCTTCCTTTTGTGCCACA
60.397
50.000
0.00
0.00
0.00
4.17
234
235
0.032540
GCCTTCCTTTTGTGCCACAG
59.967
55.000
0.00
0.00
0.00
3.66
235
236
0.032540
CCTTCCTTTTGTGCCACAGC
59.967
55.000
0.00
0.00
40.48
4.40
236
237
0.318107
CTTCCTTTTGTGCCACAGCG
60.318
55.000
0.00
0.00
44.31
5.18
243
244
3.730761
GTGCCACAGCGCCTTGAG
61.731
66.667
2.29
0.00
44.01
3.02
278
279
4.030452
GCCACGGCACAGCAGAAC
62.030
66.667
2.36
0.00
41.49
3.01
279
280
3.357079
CCACGGCACAGCAGAACC
61.357
66.667
0.00
0.00
0.00
3.62
280
281
3.357079
CACGGCACAGCAGAACCC
61.357
66.667
0.00
0.00
0.00
4.11
281
282
4.988598
ACGGCACAGCAGAACCCG
62.989
66.667
0.00
0.00
44.19
5.28
327
328
4.335647
CGCACCTCCAGCCTTGGT
62.336
66.667
0.00
0.00
45.26
3.67
328
329
2.360475
GCACCTCCAGCCTTGGTC
60.360
66.667
0.00
0.00
45.26
4.02
329
330
2.046892
CACCTCCAGCCTTGGTCG
60.047
66.667
0.00
0.00
45.26
4.79
330
331
2.203788
ACCTCCAGCCTTGGTCGA
60.204
61.111
0.00
0.00
45.26
4.20
331
332
2.286523
ACCTCCAGCCTTGGTCGAG
61.287
63.158
0.00
0.00
45.26
4.04
332
333
1.984570
CCTCCAGCCTTGGTCGAGA
60.985
63.158
0.00
0.00
45.26
4.04
333
334
1.544825
CCTCCAGCCTTGGTCGAGAA
61.545
60.000
0.00
0.00
45.26
2.87
334
335
0.390472
CTCCAGCCTTGGTCGAGAAC
60.390
60.000
0.00
0.00
45.26
3.01
342
343
4.436368
GGTCGAGAACCCCTCAGA
57.564
61.111
0.00
0.00
42.85
3.27
343
344
2.903404
GGTCGAGAACCCCTCAGAT
58.097
57.895
0.00
0.00
42.85
2.90
344
345
0.747852
GGTCGAGAACCCCTCAGATC
59.252
60.000
0.00
0.00
42.85
2.75
345
346
0.747852
GTCGAGAACCCCTCAGATCC
59.252
60.000
0.00
0.00
42.06
3.36
346
347
0.335019
TCGAGAACCCCTCAGATCCA
59.665
55.000
0.00
0.00
42.06
3.41
347
348
0.749649
CGAGAACCCCTCAGATCCAG
59.250
60.000
0.00
0.00
42.06
3.86
348
349
1.686428
CGAGAACCCCTCAGATCCAGA
60.686
57.143
0.00
0.00
42.06
3.86
349
350
1.760029
GAGAACCCCTCAGATCCAGAC
59.240
57.143
0.00
0.00
41.58
3.51
350
351
0.461961
GAACCCCTCAGATCCAGACG
59.538
60.000
0.00
0.00
0.00
4.18
351
352
0.041238
AACCCCTCAGATCCAGACGA
59.959
55.000
0.00
0.00
0.00
4.20
352
353
0.684805
ACCCCTCAGATCCAGACGAC
60.685
60.000
0.00
0.00
0.00
4.34
353
354
1.395826
CCCCTCAGATCCAGACGACC
61.396
65.000
0.00
0.00
0.00
4.79
354
355
1.395826
CCCTCAGATCCAGACGACCC
61.396
65.000
0.00
0.00
0.00
4.46
355
356
1.729470
CCTCAGATCCAGACGACCCG
61.729
65.000
0.00
0.00
0.00
5.28
356
357
1.729470
CTCAGATCCAGACGACCCGG
61.729
65.000
0.00
0.00
0.00
5.73
357
358
1.753078
CAGATCCAGACGACCCGGA
60.753
63.158
0.73
0.00
0.00
5.14
358
359
1.753463
AGATCCAGACGACCCGGAC
60.753
63.158
0.73
0.00
0.00
4.79
359
360
2.036731
ATCCAGACGACCCGGACA
59.963
61.111
0.73
0.00
0.00
4.02
360
361
1.601419
GATCCAGACGACCCGGACAA
61.601
60.000
0.73
0.00
0.00
3.18
361
362
1.885163
ATCCAGACGACCCGGACAAC
61.885
60.000
0.73
0.00
0.00
3.32
362
363
2.048503
CAGACGACCCGGACAACC
60.049
66.667
0.73
0.00
0.00
3.77
363
364
3.308705
AGACGACCCGGACAACCC
61.309
66.667
0.73
0.00
0.00
4.11
364
365
4.383861
GACGACCCGGACAACCCC
62.384
72.222
0.73
0.00
0.00
4.95
366
367
4.388499
CGACCCGGACAACCCCAG
62.388
72.222
0.73
0.00
0.00
4.45
367
368
4.029809
GACCCGGACAACCCCAGG
62.030
72.222
0.73
0.00
0.00
4.45
371
372
4.722700
CGGACAACCCCAGGCCAG
62.723
72.222
5.01
0.00
0.00
4.85
372
373
3.256960
GGACAACCCCAGGCCAGA
61.257
66.667
5.01
0.00
0.00
3.86
373
374
2.352805
GACAACCCCAGGCCAGAG
59.647
66.667
5.01
0.00
0.00
3.35
374
375
2.121963
ACAACCCCAGGCCAGAGA
60.122
61.111
5.01
0.00
0.00
3.10
375
376
2.352805
CAACCCCAGGCCAGAGAC
59.647
66.667
5.01
0.00
0.00
3.36
376
377
3.322466
AACCCCAGGCCAGAGACG
61.322
66.667
5.01
0.00
0.00
4.18
377
378
3.846405
AACCCCAGGCCAGAGACGA
62.846
63.158
5.01
0.00
0.00
4.20
378
379
2.765807
CCCCAGGCCAGAGACGAT
60.766
66.667
5.01
0.00
0.00
3.73
379
380
2.503061
CCCAGGCCAGAGACGATG
59.497
66.667
5.01
0.00
0.00
3.84
380
381
2.503061
CCAGGCCAGAGACGATGG
59.497
66.667
5.01
0.00
41.04
3.51
381
382
2.503061
CAGGCCAGAGACGATGGG
59.497
66.667
5.01
0.00
38.33
4.00
384
385
2.202987
GCCAGAGACGATGGGCTG
60.203
66.667
0.00
0.00
43.09
4.85
385
386
2.503061
CCAGAGACGATGGGCTGG
59.497
66.667
0.00
0.00
41.62
4.85
386
387
3.621225
CAGAGACGATGGGCTGGA
58.379
61.111
0.00
0.00
0.00
3.86
387
388
1.440893
CAGAGACGATGGGCTGGAG
59.559
63.158
0.00
0.00
0.00
3.86
388
389
2.107953
GAGACGATGGGCTGGAGC
59.892
66.667
0.00
0.00
41.14
4.70
398
399
3.005539
GCTGGAGCCTGGAGGACA
61.006
66.667
0.00
0.00
37.39
4.02
399
400
2.985456
CTGGAGCCTGGAGGACAC
59.015
66.667
0.00
0.00
37.39
3.67
400
401
2.607750
TGGAGCCTGGAGGACACC
60.608
66.667
0.00
0.00
37.39
4.16
401
402
3.775654
GGAGCCTGGAGGACACCG
61.776
72.222
0.00
0.00
37.39
4.94
402
403
2.680352
GAGCCTGGAGGACACCGA
60.680
66.667
0.00
0.00
37.39
4.69
403
404
2.997897
AGCCTGGAGGACACCGAC
60.998
66.667
0.00
0.00
37.39
4.79
404
405
4.436998
GCCTGGAGGACACCGACG
62.437
72.222
0.00
0.00
37.39
5.12
405
406
4.436998
CCTGGAGGACACCGACGC
62.437
72.222
0.00
0.00
37.39
5.19
406
407
4.436998
CTGGAGGACACCGACGCC
62.437
72.222
0.00
0.00
0.00
5.68
442
443
4.424711
GCCATGGCGGAACCCTCA
62.425
66.667
23.48
0.00
37.83
3.86
443
444
2.438434
CCATGGCGGAACCCTCAC
60.438
66.667
0.00
0.00
37.83
3.51
444
445
2.350895
CATGGCGGAACCCTCACA
59.649
61.111
0.00
0.00
37.83
3.58
445
446
1.746615
CATGGCGGAACCCTCACAG
60.747
63.158
0.00
0.00
37.83
3.66
446
447
1.918293
ATGGCGGAACCCTCACAGA
60.918
57.895
0.00
0.00
37.83
3.41
447
448
1.488705
ATGGCGGAACCCTCACAGAA
61.489
55.000
0.00
0.00
37.83
3.02
448
449
1.671379
GGCGGAACCCTCACAGAAC
60.671
63.158
0.00
0.00
0.00
3.01
449
450
1.671379
GCGGAACCCTCACAGAACC
60.671
63.158
0.00
0.00
0.00
3.62
450
451
1.374252
CGGAACCCTCACAGAACCG
60.374
63.158
0.00
0.00
0.00
4.44
451
452
1.812686
CGGAACCCTCACAGAACCGA
61.813
60.000
0.00
0.00
41.09
4.69
452
453
0.320508
GGAACCCTCACAGAACCGAC
60.321
60.000
0.00
0.00
0.00
4.79
453
454
0.680061
GAACCCTCACAGAACCGACT
59.320
55.000
0.00
0.00
0.00
4.18
454
455
0.680061
AACCCTCACAGAACCGACTC
59.320
55.000
0.00
0.00
0.00
3.36
455
456
1.213013
CCCTCACAGAACCGACTCG
59.787
63.158
0.00
0.00
0.00
4.18
456
457
1.241990
CCCTCACAGAACCGACTCGA
61.242
60.000
0.00
0.00
0.00
4.04
457
458
0.596577
CCTCACAGAACCGACTCGAA
59.403
55.000
0.00
0.00
0.00
3.71
458
459
1.666311
CCTCACAGAACCGACTCGAAC
60.666
57.143
0.00
0.00
0.00
3.95
459
460
0.040692
TCACAGAACCGACTCGAACG
60.041
55.000
0.00
4.96
0.00
3.95
460
461
0.040692
CACAGAACCGACTCGAACGA
60.041
55.000
12.18
0.00
0.00
3.85
461
462
0.040603
ACAGAACCGACTCGAACGAC
60.041
55.000
12.18
4.94
0.00
4.34
462
463
1.058590
CAGAACCGACTCGAACGACG
61.059
60.000
12.18
0.00
44.09
5.12
465
466
3.425713
CCGACTCGAACGACGGGA
61.426
66.667
15.12
0.00
46.62
5.14
466
467
2.758089
CCGACTCGAACGACGGGAT
61.758
63.158
15.12
0.00
46.62
3.85
467
468
1.582937
CGACTCGAACGACGGGATG
60.583
63.158
12.59
2.26
46.62
3.51
468
469
1.872679
GACTCGAACGACGGGATGC
60.873
63.158
12.59
0.25
46.62
3.91
469
470
2.949678
CTCGAACGACGGGATGCG
60.950
66.667
0.00
0.00
46.62
4.73
506
507
3.827898
CGGCGAGAGAGGGTGGAC
61.828
72.222
0.00
0.00
0.00
4.02
507
508
3.827898
GGCGAGAGAGGGTGGACG
61.828
72.222
0.00
0.00
0.00
4.79
508
509
4.500116
GCGAGAGAGGGTGGACGC
62.500
72.222
0.00
0.00
39.33
5.19
509
510
3.827898
CGAGAGAGGGTGGACGCC
61.828
72.222
0.00
0.00
0.00
5.68
510
511
3.827898
GAGAGAGGGTGGACGCCG
61.828
72.222
0.00
0.00
0.00
6.46
543
544
4.148825
CCGGCGGAGGAGAAGGTG
62.149
72.222
24.41
0.00
0.00
4.00
544
545
4.148825
CGGCGGAGGAGAAGGTGG
62.149
72.222
0.00
0.00
0.00
4.61
545
546
2.683933
GGCGGAGGAGAAGGTGGA
60.684
66.667
0.00
0.00
0.00
4.02
546
547
2.579738
GCGGAGGAGAAGGTGGAC
59.420
66.667
0.00
0.00
0.00
4.02
547
548
2.283529
GCGGAGGAGAAGGTGGACA
61.284
63.158
0.00
0.00
0.00
4.02
548
549
1.592223
CGGAGGAGAAGGTGGACAC
59.408
63.158
0.00
0.00
0.00
3.67
558
559
4.629523
GTGGACACCGGCGGGAAA
62.630
66.667
31.78
7.97
36.97
3.13
559
560
4.323477
TGGACACCGGCGGGAAAG
62.323
66.667
31.78
18.67
36.97
2.62
565
566
4.547367
CCGGCGGGAAAGGGCTAG
62.547
72.222
20.56
0.00
34.06
3.42
566
567
4.547367
CGGCGGGAAAGGGCTAGG
62.547
72.222
0.00
0.00
0.00
3.02
567
568
4.191015
GGCGGGAAAGGGCTAGGG
62.191
72.222
0.00
0.00
0.00
3.53
568
569
4.191015
GCGGGAAAGGGCTAGGGG
62.191
72.222
0.00
0.00
0.00
4.79
569
570
2.366435
CGGGAAAGGGCTAGGGGA
60.366
66.667
0.00
0.00
0.00
4.81
570
571
1.999002
CGGGAAAGGGCTAGGGGAA
60.999
63.158
0.00
0.00
0.00
3.97
571
572
1.923586
GGGAAAGGGCTAGGGGAAG
59.076
63.158
0.00
0.00
0.00
3.46
572
573
1.646367
GGGAAAGGGCTAGGGGAAGG
61.646
65.000
0.00
0.00
0.00
3.46
573
574
1.646367
GGAAAGGGCTAGGGGAAGGG
61.646
65.000
0.00
0.00
0.00
3.95
574
575
1.622752
AAAGGGCTAGGGGAAGGGG
60.623
63.158
0.00
0.00
0.00
4.79
575
576
4.845307
AGGGCTAGGGGAAGGGGC
62.845
72.222
0.00
0.00
0.00
5.80
576
577
4.845307
GGGCTAGGGGAAGGGGCT
62.845
72.222
0.00
0.00
0.00
5.19
577
578
3.172106
GGCTAGGGGAAGGGGCTC
61.172
72.222
0.00
0.00
0.00
4.70
578
579
3.551407
GCTAGGGGAAGGGGCTCG
61.551
72.222
0.00
0.00
0.00
5.03
579
580
3.551407
CTAGGGGAAGGGGCTCGC
61.551
72.222
0.00
0.00
0.00
5.03
580
581
4.089757
TAGGGGAAGGGGCTCGCT
62.090
66.667
0.00
0.00
0.00
4.93
599
600
3.194861
GCTCGCTGGTATATCAAACACA
58.805
45.455
0.00
0.00
0.00
3.72
631
632
5.075493
AGAAAAGTGACATGGCAGATCTTT
58.925
37.500
0.00
5.55
0.00
2.52
662
663
3.422417
TTCATGCCGAAAAACGAACAA
57.578
38.095
0.00
0.00
45.77
2.83
678
679
2.900122
ACAATTGAATCAGCGTTCGG
57.100
45.000
13.59
0.00
0.00
4.30
702
913
4.681835
CGAGATCGTTATAATCCCTCGT
57.318
45.455
15.25
0.00
37.74
4.18
711
922
3.840124
ATAATCCCTCGTTTGGTCCTC
57.160
47.619
0.00
0.00
0.00
3.71
712
923
1.657804
AATCCCTCGTTTGGTCCTCT
58.342
50.000
0.00
0.00
0.00
3.69
713
924
1.196012
ATCCCTCGTTTGGTCCTCTC
58.804
55.000
0.00
0.00
0.00
3.20
718
929
3.211045
CCTCGTTTGGTCCTCTCAAAAA
58.789
45.455
0.00
0.00
36.11
1.94
726
1182
5.567037
TGGTCCTCTCAAAAATGAAGAGA
57.433
39.130
0.31
0.00
36.95
3.10
750
1206
1.871039
CCCGTACGCATTTCCCAATAG
59.129
52.381
10.49
0.00
0.00
1.73
751
1207
2.484065
CCCGTACGCATTTCCCAATAGA
60.484
50.000
10.49
0.00
0.00
1.98
752
1208
3.399330
CCGTACGCATTTCCCAATAGAT
58.601
45.455
10.49
0.00
0.00
1.98
753
1209
3.432252
CCGTACGCATTTCCCAATAGATC
59.568
47.826
10.49
0.00
0.00
2.75
755
1211
4.690748
CGTACGCATTTCCCAATAGATCAT
59.309
41.667
0.52
0.00
0.00
2.45
756
1212
5.179368
CGTACGCATTTCCCAATAGATCATT
59.821
40.000
0.52
0.00
0.00
2.57
758
1214
6.560253
ACGCATTTCCCAATAGATCATTAC
57.440
37.500
0.00
0.00
0.00
1.89
759
1215
5.179368
ACGCATTTCCCAATAGATCATTACG
59.821
40.000
0.00
0.00
0.00
3.18
760
1216
5.408299
CGCATTTCCCAATAGATCATTACGA
59.592
40.000
0.00
0.00
0.00
3.43
761
1217
6.092670
CGCATTTCCCAATAGATCATTACGAT
59.907
38.462
0.00
0.00
36.91
3.73
762
1218
7.277760
CGCATTTCCCAATAGATCATTACGATA
59.722
37.037
0.00
0.00
33.17
2.92
763
1219
8.946085
GCATTTCCCAATAGATCATTACGATAA
58.054
33.333
0.00
0.00
33.17
1.75
765
1221
8.842358
TTTCCCAATAGATCATTACGATAACC
57.158
34.615
0.00
0.00
33.17
2.85
766
1222
6.627243
TCCCAATAGATCATTACGATAACCG
58.373
40.000
0.00
0.00
45.44
4.44
767
1223
5.291128
CCCAATAGATCATTACGATAACCGC
59.709
44.000
0.00
0.00
43.32
5.68
768
1224
6.100004
CCAATAGATCATTACGATAACCGCT
58.900
40.000
0.00
0.00
43.32
5.52
769
1225
6.590292
CCAATAGATCATTACGATAACCGCTT
59.410
38.462
0.00
0.00
43.32
4.68
774
1230
4.489249
ACGATAACCGCTTCGTGG
57.511
55.556
0.00
0.00
46.03
4.94
782
1238
1.523711
CCGCTTCGTGGCATGGTAT
60.524
57.895
6.90
0.00
0.00
2.73
790
1246
1.466950
CGTGGCATGGTATCGTGTTTT
59.533
47.619
0.00
0.00
32.65
2.43
791
1247
2.095466
CGTGGCATGGTATCGTGTTTTT
60.095
45.455
0.00
0.00
32.65
1.94
874
1597
1.990060
CCTCCGCCTCTTCCCTTCA
60.990
63.158
0.00
0.00
0.00
3.02
900
1631
1.303236
CACCCATCACGGAGGCAAA
60.303
57.895
0.00
0.00
36.56
3.68
901
1632
1.303317
ACCCATCACGGAGGCAAAC
60.303
57.895
0.00
0.00
36.56
2.93
902
1633
1.303236
CCCATCACGGAGGCAAACA
60.303
57.895
0.00
0.00
36.56
2.83
944
1675
5.009854
TCCAAAGTTCAAAAAGAGCAAGG
57.990
39.130
0.00
0.00
0.00
3.61
1005
1737
2.125512
GTTGTCGCGGAGATGGCT
60.126
61.111
6.13
0.00
0.00
4.75
1007
1739
4.819761
TGTCGCGGAGATGGCTGC
62.820
66.667
6.13
0.00
36.81
5.25
1613
2352
8.109560
TGCTTACCCTAAAATACCCTAGAAAT
57.890
34.615
0.00
0.00
0.00
2.17
1662
2401
1.603456
TTTGCTGGATTCTTCACGCA
58.397
45.000
0.00
0.00
0.00
5.24
1867
2648
5.207033
GCCAGCAATTTTGAAAAACATGAC
58.793
37.500
0.00
0.00
0.00
3.06
1937
2730
4.692155
GGTAACGTAACAAGCAAGTACCAT
59.308
41.667
0.00
0.00
0.00
3.55
2083
2880
5.571784
AATTGTGTTACAGCCTGATGATG
57.428
39.130
0.00
0.00
0.00
3.07
2201
3028
7.484993
TGTGGTTACTTCTTACCAGCTTATA
57.515
36.000
0.00
0.00
44.66
0.98
2202
3029
8.086143
TGTGGTTACTTCTTACCAGCTTATAT
57.914
34.615
0.00
0.00
44.66
0.86
2203
3030
9.204337
TGTGGTTACTTCTTACCAGCTTATATA
57.796
33.333
0.00
0.00
44.66
0.86
2662
3671
3.123804
GCCACGTGTAGAGATTACATGG
58.876
50.000
15.65
6.93
38.42
3.66
2870
4020
7.448469
AGTTGTACCATATCCCTGATTTTATGC
59.552
37.037
0.00
0.00
0.00
3.14
2882
4032
6.204359
CCTGATTTTATGCTCGAAAATGAGG
58.796
40.000
16.16
16.16
45.18
3.86
3914
5610
2.849943
ACTTCTATGGCACCATTACCCA
59.150
45.455
7.63
0.00
37.82
4.51
4175
5871
0.036952
CTCAGTGGCGAATGTGACCT
60.037
55.000
0.00
0.00
0.00
3.85
5023
6759
5.888161
AGTTCAGTTGGTTTGTGAGATTTCT
59.112
36.000
0.00
0.00
0.00
2.52
5034
6770
4.307432
TGTGAGATTTCTGTCTCGGTTTC
58.693
43.478
0.00
0.00
46.04
2.78
5137
6880
2.770164
AATTTCCGTCTCTGGTGAGG
57.230
50.000
0.00
0.00
40.58
3.86
5211
6954
3.221771
TGCAACTCCTTATGTGCAAACT
58.778
40.909
0.00
0.00
0.00
2.66
5245
6988
5.053145
CAGTGGCTGAACCTTGTAGATATC
58.947
45.833
0.00
0.00
40.22
1.63
5272
7015
3.008330
CTGATGCCTTTTCTGTCTCTGG
58.992
50.000
0.00
0.00
0.00
3.86
5274
7017
0.603707
TGCCTTTTCTGTCTCTGGCG
60.604
55.000
0.00
0.00
42.87
5.69
5344
7087
3.508845
AACAAGTAGGTTGATGCCTGT
57.491
42.857
0.00
0.00
38.60
4.00
5389
7132
4.142359
TGACCTTTTTGCGAAAGTTTAGCA
60.142
37.500
18.03
18.03
39.33
3.49
5399
7142
4.617223
GCGAAAGTTTAGCAAGATTTGACC
59.383
41.667
14.90
0.00
0.00
4.02
5401
7144
6.080406
CGAAAGTTTAGCAAGATTTGACCTC
58.920
40.000
0.00
0.00
0.00
3.85
5439
7182
4.022676
TCGGAATTTGACCTTTTTGCTACC
60.023
41.667
0.00
0.00
0.00
3.18
5440
7183
4.234574
GGAATTTGACCTTTTTGCTACCG
58.765
43.478
0.00
0.00
0.00
4.02
5441
7184
4.261867
GGAATTTGACCTTTTTGCTACCGT
60.262
41.667
0.00
0.00
0.00
4.83
5442
7185
4.929819
ATTTGACCTTTTTGCTACCGTT
57.070
36.364
0.00
0.00
0.00
4.44
5443
7186
6.394025
AATTTGACCTTTTTGCTACCGTTA
57.606
33.333
0.00
0.00
0.00
3.18
5444
7187
5.427036
TTTGACCTTTTTGCTACCGTTAG
57.573
39.130
0.00
0.00
0.00
2.34
5445
7188
3.404899
TGACCTTTTTGCTACCGTTAGG
58.595
45.455
0.00
0.00
45.13
2.69
5446
7189
2.745821
GACCTTTTTGCTACCGTTAGGG
59.254
50.000
0.00
0.00
43.47
3.53
5455
7198
4.704007
CCGTTAGGGTCGATGACG
57.296
61.111
0.00
0.00
41.26
4.35
5456
7199
1.065273
CCGTTAGGGTCGATGACGG
59.935
63.158
6.48
6.48
45.86
4.79
5457
7200
1.660560
CCGTTAGGGTCGATGACGGT
61.661
60.000
11.50
0.00
45.94
4.83
5458
7201
1.016627
CGTTAGGGTCGATGACGGTA
58.983
55.000
0.00
0.00
40.21
4.02
5459
7202
1.003116
CGTTAGGGTCGATGACGGTAG
60.003
57.143
0.00
0.00
40.21
3.18
5460
7203
1.336125
GTTAGGGTCGATGACGGTAGG
59.664
57.143
0.00
0.00
40.21
3.18
5461
7204
0.179009
TAGGGTCGATGACGGTAGGG
60.179
60.000
0.00
0.00
40.21
3.53
5462
7205
1.755783
GGGTCGATGACGGTAGGGT
60.756
63.158
0.00
0.00
40.21
4.34
5463
7206
0.466189
GGGTCGATGACGGTAGGGTA
60.466
60.000
0.00
0.00
40.21
3.69
5464
7207
0.665298
GGTCGATGACGGTAGGGTAC
59.335
60.000
0.00
0.00
40.21
3.34
5465
7208
1.382522
GTCGATGACGGTAGGGTACA
58.617
55.000
0.00
0.00
40.21
2.90
5466
7209
1.745087
GTCGATGACGGTAGGGTACAA
59.255
52.381
0.00
0.00
40.21
2.41
5467
7210
1.745087
TCGATGACGGTAGGGTACAAC
59.255
52.381
0.00
0.00
40.21
3.32
5468
7211
1.473677
CGATGACGGTAGGGTACAACA
59.526
52.381
0.00
0.00
35.72
3.33
5469
7212
2.479049
CGATGACGGTAGGGTACAACAG
60.479
54.545
0.00
0.00
35.72
3.16
5470
7213
0.604578
TGACGGTAGGGTACAACAGC
59.395
55.000
0.00
0.00
0.00
4.40
5471
7214
0.108472
GACGGTAGGGTACAACAGCC
60.108
60.000
0.00
0.00
45.89
4.85
5476
7219
4.926207
GGGTACAACAGCCTACCG
57.074
61.111
0.00
0.00
41.95
4.02
5477
7220
1.449070
GGGTACAACAGCCTACCGC
60.449
63.158
0.00
0.00
41.95
5.68
5478
7221
1.449070
GGTACAACAGCCTACCGCC
60.449
63.158
0.00
0.00
38.78
6.13
5511
7254
2.558378
GTAGCAAACGGGTTAGATCCC
58.442
52.381
0.00
0.00
43.78
3.85
5523
7290
5.225642
GGGTTAGATCCCGAAATACTTACG
58.774
45.833
0.00
0.00
37.93
3.18
5544
7311
1.622811
GATGGGGTCAGATCCAGCTAG
59.377
57.143
0.94
0.00
36.59
3.42
5575
7343
5.901336
GCAAAAATGTCAAAACACGGAAATC
59.099
36.000
0.00
0.00
38.48
2.17
5589
7357
1.641577
GAAATCGAGGGTCCTTGACG
58.358
55.000
9.01
0.08
39.08
4.35
5622
7390
2.417516
CTACCGCCATCGACCCTG
59.582
66.667
0.00
0.00
38.10
4.45
5634
7402
0.605319
CGACCCTGGCACTTTAGCAA
60.605
55.000
0.00
0.00
35.83
3.91
5636
7404
1.960689
GACCCTGGCACTTTAGCAAAA
59.039
47.619
0.00
0.00
35.83
2.44
5644
7412
5.049167
TGGCACTTTAGCAAAAATGTCAAG
58.951
37.500
0.00
0.00
33.85
3.02
5663
7431
0.804989
GACACGGAAATTGGCTCCTG
59.195
55.000
0.00
0.00
0.00
3.86
5713
7481
2.878520
GCTGCGAGCGAGTCTGTC
60.879
66.667
0.00
0.00
0.00
3.51
5714
7482
2.874019
CTGCGAGCGAGTCTGTCT
59.126
61.111
0.00
0.00
0.00
3.41
5715
7483
1.513800
CTGCGAGCGAGTCTGTCTG
60.514
63.158
0.00
0.00
0.00
3.51
5716
7484
2.878520
GCGAGCGAGTCTGTCTGC
60.879
66.667
0.00
0.00
0.00
4.26
5717
7485
2.874019
CGAGCGAGTCTGTCTGCT
59.126
61.111
0.00
0.00
41.11
4.24
5718
7486
1.513800
CGAGCGAGTCTGTCTGCTG
60.514
63.158
0.00
0.00
37.91
4.41
5719
7487
1.805134
GAGCGAGTCTGTCTGCTGC
60.805
63.158
0.00
0.00
37.91
5.25
5720
7488
2.211619
GAGCGAGTCTGTCTGCTGCT
62.212
60.000
0.00
0.00
37.91
4.24
5721
7489
2.093473
GCGAGTCTGTCTGCTGCTG
61.093
63.158
0.00
0.00
0.00
4.41
5722
7490
2.093473
CGAGTCTGTCTGCTGCTGC
61.093
63.158
8.89
8.89
40.20
5.25
5732
7500
4.063529
GCTGCTGCAAGTGTACCA
57.936
55.556
11.11
0.00
39.41
3.25
5735
7503
0.599991
CTGCTGCAAGTGTACCACGA
60.600
55.000
3.02
0.00
39.64
4.35
5736
7504
0.878523
TGCTGCAAGTGTACCACGAC
60.879
55.000
0.00
0.00
39.64
4.34
5737
7505
0.878523
GCTGCAAGTGTACCACGACA
60.879
55.000
0.00
0.00
39.64
4.35
5738
7506
1.139989
CTGCAAGTGTACCACGACAG
58.860
55.000
0.00
0.00
39.64
3.51
5739
7507
0.462375
TGCAAGTGTACCACGACAGT
59.538
50.000
0.00
0.00
39.64
3.55
5747
7518
1.459592
GTACCACGACAGTGTTCATGC
59.540
52.381
0.00
0.00
46.56
4.06
5758
7529
2.954318
AGTGTTCATGCTGCAAAAGACT
59.046
40.909
18.77
18.77
0.00
3.24
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
20
21
0.462047
CTGGAAGGCCACGTATCCAC
60.462
60.000
5.01
2.22
39.92
4.02
22
23
4.857251
CTGGAAGGCCACGTATCC
57.143
61.111
5.01
5.01
39.92
2.59
34
35
2.933287
ATCCGGTGTGGCCTGGAA
60.933
61.111
3.32
0.00
41.07
3.53
37
38
4.720902
TGCATCCGGTGTGGCCTG
62.721
66.667
3.32
0.00
37.80
4.85
40
41
2.568090
CTTTGCATCCGGTGTGGC
59.432
61.111
0.00
1.58
37.80
5.01
59
60
0.884514
GAAGGCTGCTGGTTTCCTTC
59.115
55.000
10.45
10.45
45.11
3.46
60
61
0.540597
GGAAGGCTGCTGGTTTCCTT
60.541
55.000
14.11
0.84
41.27
3.36
61
62
1.075659
GGAAGGCTGCTGGTTTCCT
59.924
57.895
14.11
0.00
36.88
3.36
68
69
3.376935
ATCGTCGGGAAGGCTGCTG
62.377
63.158
0.00
0.00
0.00
4.41
69
70
3.077556
ATCGTCGGGAAGGCTGCT
61.078
61.111
0.00
0.00
0.00
4.24
74
75
4.547367
GGGCCATCGTCGGGAAGG
62.547
72.222
4.39
0.00
36.57
3.46
93
94
1.343142
TCTGCTTCAACTGCTTCCGTA
59.657
47.619
0.00
0.00
0.00
4.02
94
95
0.106708
TCTGCTTCAACTGCTTCCGT
59.893
50.000
0.00
0.00
0.00
4.69
97
98
0.520847
GCCTCTGCTTCAACTGCTTC
59.479
55.000
0.00
0.00
33.53
3.86
103
104
0.884704
TGTTCGGCCTCTGCTTCAAC
60.885
55.000
0.00
0.00
37.74
3.18
118
119
3.735037
GATCCCGGCGGACCTGTTC
62.735
68.421
30.79
11.26
42.48
3.18
132
133
1.745264
CTGAAGCGGAGGGAGATCC
59.255
63.158
0.00
0.00
35.88
3.36
173
174
4.451150
TGGCGTCCGGTCATGCTC
62.451
66.667
0.00
0.00
0.00
4.26
174
175
4.760047
GTGGCGTCCGGTCATGCT
62.760
66.667
0.00
0.00
29.50
3.79
197
198
1.720301
CTCTTCGGAAGCATGCAGC
59.280
57.895
21.98
10.95
46.19
5.25
198
199
1.712977
GGCTCTTCGGAAGCATGCAG
61.713
60.000
21.98
7.33
0.00
4.41
199
200
1.746615
GGCTCTTCGGAAGCATGCA
60.747
57.895
21.98
0.00
0.00
3.96
200
201
1.028868
AAGGCTCTTCGGAAGCATGC
61.029
55.000
10.51
10.51
0.00
4.06
201
202
1.012841
GAAGGCTCTTCGGAAGCATG
58.987
55.000
12.90
6.83
0.00
4.06
202
203
0.107459
GGAAGGCTCTTCGGAAGCAT
60.107
55.000
12.90
0.00
0.00
3.79
203
204
1.194781
AGGAAGGCTCTTCGGAAGCA
61.195
55.000
12.90
1.85
0.00
3.91
204
205
0.035915
AAGGAAGGCTCTTCGGAAGC
60.036
55.000
12.90
2.92
0.00
3.86
205
206
2.481289
AAAGGAAGGCTCTTCGGAAG
57.519
50.000
11.54
11.54
0.00
3.46
206
207
2.158667
ACAAAAGGAAGGCTCTTCGGAA
60.159
45.455
8.31
0.00
0.00
4.30
207
208
1.420138
ACAAAAGGAAGGCTCTTCGGA
59.580
47.619
8.31
0.00
0.00
4.55
208
209
1.537202
CACAAAAGGAAGGCTCTTCGG
59.463
52.381
8.31
0.00
0.00
4.30
209
210
1.068954
GCACAAAAGGAAGGCTCTTCG
60.069
52.381
8.31
0.00
0.00
3.79
210
211
1.270826
GGCACAAAAGGAAGGCTCTTC
59.729
52.381
6.43
6.43
0.00
2.87
211
212
1.332195
GGCACAAAAGGAAGGCTCTT
58.668
50.000
0.00
0.00
0.00
2.85
212
213
0.185901
TGGCACAAAAGGAAGGCTCT
59.814
50.000
0.00
0.00
31.92
4.09
213
214
0.315251
GTGGCACAAAAGGAAGGCTC
59.685
55.000
13.86
0.00
44.16
4.70
214
215
0.396974
TGTGGCACAAAAGGAAGGCT
60.397
50.000
19.74
0.00
44.16
4.58
215
216
0.032540
CTGTGGCACAAAAGGAAGGC
59.967
55.000
22.31
0.00
44.16
4.35
216
217
0.032540
GCTGTGGCACAAAAGGAAGG
59.967
55.000
22.31
8.29
44.16
3.46
217
218
0.318107
CGCTGTGGCACAAAAGGAAG
60.318
55.000
22.31
9.05
44.16
3.46
218
219
1.732917
CGCTGTGGCACAAAAGGAA
59.267
52.632
22.31
0.00
44.16
3.36
219
220
2.844451
GCGCTGTGGCACAAAAGGA
61.844
57.895
22.31
0.00
44.16
3.36
220
221
2.355009
GCGCTGTGGCACAAAAGG
60.355
61.111
22.31
10.95
44.16
3.11
221
222
2.355009
GGCGCTGTGGCACAAAAG
60.355
61.111
22.31
15.76
44.16
2.27
261
262
4.030452
GTTCTGCTGTGCCGTGGC
62.030
66.667
3.30
3.30
42.35
5.01
262
263
3.357079
GGTTCTGCTGTGCCGTGG
61.357
66.667
0.00
0.00
0.00
4.94
263
264
3.357079
GGGTTCTGCTGTGCCGTG
61.357
66.667
0.00
0.00
0.00
4.94
264
265
4.988598
CGGGTTCTGCTGTGCCGT
62.989
66.667
0.00
0.00
0.00
5.68
310
311
4.335647
ACCAAGGCTGGAGGTGCG
62.336
66.667
9.53
0.00
46.92
5.34
311
312
2.360475
GACCAAGGCTGGAGGTGC
60.360
66.667
10.80
1.02
46.92
5.01
312
313
2.046892
CGACCAAGGCTGGAGGTG
60.047
66.667
10.80
0.00
46.92
4.00
313
314
2.203788
TCGACCAAGGCTGGAGGT
60.204
61.111
6.28
6.28
46.92
3.85
314
315
1.544825
TTCTCGACCAAGGCTGGAGG
61.545
60.000
9.53
4.87
46.92
4.30
315
316
0.390472
GTTCTCGACCAAGGCTGGAG
60.390
60.000
9.53
2.55
46.92
3.86
316
317
1.671742
GTTCTCGACCAAGGCTGGA
59.328
57.895
9.53
0.00
46.92
3.86
326
327
0.747852
GGATCTGAGGGGTTCTCGAC
59.252
60.000
0.00
0.00
45.32
4.20
327
328
0.335019
TGGATCTGAGGGGTTCTCGA
59.665
55.000
0.00
0.00
45.32
4.04
328
329
0.749649
CTGGATCTGAGGGGTTCTCG
59.250
60.000
0.00
0.00
45.32
4.04
329
330
1.760029
GTCTGGATCTGAGGGGTTCTC
59.240
57.143
0.00
0.00
42.74
2.87
330
331
1.872773
GTCTGGATCTGAGGGGTTCT
58.127
55.000
0.00
0.00
0.00
3.01
331
332
0.461961
CGTCTGGATCTGAGGGGTTC
59.538
60.000
0.00
0.00
0.00
3.62
332
333
0.041238
TCGTCTGGATCTGAGGGGTT
59.959
55.000
0.00
0.00
0.00
4.11
333
334
0.684805
GTCGTCTGGATCTGAGGGGT
60.685
60.000
0.00
0.00
0.00
4.95
334
335
1.395826
GGTCGTCTGGATCTGAGGGG
61.396
65.000
0.00
0.00
0.00
4.79
335
336
1.395826
GGGTCGTCTGGATCTGAGGG
61.396
65.000
0.00
0.00
0.00
4.30
336
337
1.729470
CGGGTCGTCTGGATCTGAGG
61.729
65.000
0.00
0.00
33.67
3.86
337
338
1.729470
CCGGGTCGTCTGGATCTGAG
61.729
65.000
0.00
0.00
44.90
3.35
338
339
1.753078
CCGGGTCGTCTGGATCTGA
60.753
63.158
0.00
0.00
44.90
3.27
339
340
1.753078
TCCGGGTCGTCTGGATCTG
60.753
63.158
0.00
0.00
45.65
2.90
340
341
2.681591
TCCGGGTCGTCTGGATCT
59.318
61.111
0.00
0.00
45.65
2.75
344
345
2.048503
GTTGTCCGGGTCGTCTGG
60.049
66.667
0.00
0.91
43.43
3.86
345
346
2.048503
GGTTGTCCGGGTCGTCTG
60.049
66.667
0.00
0.00
0.00
3.51
346
347
3.308705
GGGTTGTCCGGGTCGTCT
61.309
66.667
0.00
0.00
33.83
4.18
347
348
4.383861
GGGGTTGTCCGGGTCGTC
62.384
72.222
0.00
0.00
36.01
4.20
349
350
4.388499
CTGGGGTTGTCCGGGTCG
62.388
72.222
0.00
0.00
36.01
4.79
350
351
4.029809
CCTGGGGTTGTCCGGGTC
62.030
72.222
0.00
0.00
46.04
4.46
354
355
4.722700
CTGGCCTGGGGTTGTCCG
62.723
72.222
3.32
0.00
36.01
4.79
355
356
3.256960
TCTGGCCTGGGGTTGTCC
61.257
66.667
10.07
0.00
0.00
4.02
356
357
2.224159
TCTCTGGCCTGGGGTTGTC
61.224
63.158
9.99
0.00
0.00
3.18
357
358
2.121963
TCTCTGGCCTGGGGTTGT
60.122
61.111
9.99
0.00
0.00
3.32
358
359
2.352805
GTCTCTGGCCTGGGGTTG
59.647
66.667
9.99
0.00
0.00
3.77
359
360
3.322466
CGTCTCTGGCCTGGGGTT
61.322
66.667
9.99
0.00
0.00
4.11
360
361
3.625632
ATCGTCTCTGGCCTGGGGT
62.626
63.158
9.99
0.00
0.00
4.95
361
362
2.765807
ATCGTCTCTGGCCTGGGG
60.766
66.667
9.99
0.00
0.00
4.96
362
363
2.503061
CATCGTCTCTGGCCTGGG
59.497
66.667
10.07
6.46
0.00
4.45
363
364
2.503061
CCATCGTCTCTGGCCTGG
59.497
66.667
10.07
0.00
0.00
4.45
364
365
2.503061
CCCATCGTCTCTGGCCTG
59.497
66.667
3.32
2.92
32.08
4.85
365
366
3.474570
GCCCATCGTCTCTGGCCT
61.475
66.667
3.32
0.00
37.94
5.19
366
367
3.474570
AGCCCATCGTCTCTGGCC
61.475
66.667
0.00
0.00
45.14
5.36
367
368
2.202987
CAGCCCATCGTCTCTGGC
60.203
66.667
0.00
0.00
44.35
4.85
368
369
2.025767
CTCCAGCCCATCGTCTCTGG
62.026
65.000
0.92
0.92
45.59
3.86
369
370
1.440893
CTCCAGCCCATCGTCTCTG
59.559
63.158
0.00
0.00
0.00
3.35
370
371
2.430610
GCTCCAGCCCATCGTCTCT
61.431
63.158
0.00
0.00
34.31
3.10
371
372
2.107953
GCTCCAGCCCATCGTCTC
59.892
66.667
0.00
0.00
34.31
3.36
381
382
3.005539
TGTCCTCCAGGCTCCAGC
61.006
66.667
0.00
0.00
41.14
4.85
382
383
2.664081
GGTGTCCTCCAGGCTCCAG
61.664
68.421
0.00
0.00
34.44
3.86
383
384
2.607750
GGTGTCCTCCAGGCTCCA
60.608
66.667
0.00
0.00
34.44
3.86
384
385
3.775654
CGGTGTCCTCCAGGCTCC
61.776
72.222
0.00
0.00
34.44
4.70
385
386
2.680352
TCGGTGTCCTCCAGGCTC
60.680
66.667
0.00
0.00
34.44
4.70
386
387
2.997897
GTCGGTGTCCTCCAGGCT
60.998
66.667
0.00
0.00
34.44
4.58
387
388
4.436998
CGTCGGTGTCCTCCAGGC
62.437
72.222
0.00
0.00
34.44
4.85
388
389
4.436998
GCGTCGGTGTCCTCCAGG
62.437
72.222
0.00
0.00
0.00
4.45
389
390
4.436998
GGCGTCGGTGTCCTCCAG
62.437
72.222
0.00
0.00
0.00
3.86
425
426
4.424711
TGAGGGTTCCGCCATGGC
62.425
66.667
27.67
27.67
39.65
4.40
426
427
2.438434
GTGAGGGTTCCGCCATGG
60.438
66.667
7.63
7.63
39.65
3.66
427
428
1.746615
CTGTGAGGGTTCCGCCATG
60.747
63.158
0.00
0.00
39.65
3.66
428
429
1.488705
TTCTGTGAGGGTTCCGCCAT
61.489
55.000
0.00
0.00
39.65
4.40
429
430
2.144078
TTCTGTGAGGGTTCCGCCA
61.144
57.895
0.00
0.00
39.65
5.69
430
431
1.671379
GTTCTGTGAGGGTTCCGCC
60.671
63.158
0.00
0.00
0.00
6.13
431
432
1.671379
GGTTCTGTGAGGGTTCCGC
60.671
63.158
0.00
0.00
0.00
5.54
432
433
1.374252
CGGTTCTGTGAGGGTTCCG
60.374
63.158
0.00
0.00
0.00
4.30
433
434
0.320508
GTCGGTTCTGTGAGGGTTCC
60.321
60.000
0.00
0.00
0.00
3.62
434
435
0.680061
AGTCGGTTCTGTGAGGGTTC
59.320
55.000
0.00
0.00
0.00
3.62
435
436
0.680061
GAGTCGGTTCTGTGAGGGTT
59.320
55.000
0.00
0.00
0.00
4.11
436
437
1.524863
CGAGTCGGTTCTGTGAGGGT
61.525
60.000
4.10
0.00
0.00
4.34
437
438
1.213013
CGAGTCGGTTCTGTGAGGG
59.787
63.158
4.10
0.00
0.00
4.30
438
439
0.596577
TTCGAGTCGGTTCTGTGAGG
59.403
55.000
13.54
0.00
0.00
3.86
439
440
1.687628
GTTCGAGTCGGTTCTGTGAG
58.312
55.000
13.54
0.00
0.00
3.51
440
441
0.040692
CGTTCGAGTCGGTTCTGTGA
60.041
55.000
13.54
0.00
0.00
3.58
441
442
0.040692
TCGTTCGAGTCGGTTCTGTG
60.041
55.000
13.54
0.00
0.00
3.66
442
443
0.040603
GTCGTTCGAGTCGGTTCTGT
60.041
55.000
13.54
0.00
0.00
3.41
443
444
1.058590
CGTCGTTCGAGTCGGTTCTG
61.059
60.000
13.54
0.00
42.86
3.02
444
445
1.206072
CGTCGTTCGAGTCGGTTCT
59.794
57.895
13.54
0.00
42.86
3.01
445
446
1.795177
CCGTCGTTCGAGTCGGTTC
60.795
63.158
13.54
2.78
42.86
3.62
446
447
2.253452
CCGTCGTTCGAGTCGGTT
59.747
61.111
13.54
0.00
42.86
4.44
447
448
3.730761
CCCGTCGTTCGAGTCGGT
61.731
66.667
13.54
0.00
40.31
4.69
448
449
2.758089
ATCCCGTCGTTCGAGTCGG
61.758
63.158
13.54
14.33
42.86
4.79
449
450
1.582937
CATCCCGTCGTTCGAGTCG
60.583
63.158
6.09
6.09
42.86
4.18
450
451
1.872679
GCATCCCGTCGTTCGAGTC
60.873
63.158
0.00
0.00
42.86
3.36
451
452
2.181021
GCATCCCGTCGTTCGAGT
59.819
61.111
0.00
0.00
42.86
4.18
452
453
2.949678
CGCATCCCGTCGTTCGAG
60.950
66.667
0.00
0.00
42.86
4.04
489
490
3.827898
GTCCACCCTCTCTCGCCG
61.828
72.222
0.00
0.00
0.00
6.46
490
491
3.827898
CGTCCACCCTCTCTCGCC
61.828
72.222
0.00
0.00
0.00
5.54
491
492
4.500116
GCGTCCACCCTCTCTCGC
62.500
72.222
0.00
0.00
37.17
5.03
492
493
3.827898
GGCGTCCACCCTCTCTCG
61.828
72.222
0.00
0.00
0.00
4.04
493
494
3.827898
CGGCGTCCACCCTCTCTC
61.828
72.222
0.00
0.00
0.00
3.20
526
527
4.148825
CACCTTCTCCTCCGCCGG
62.149
72.222
0.00
0.00
0.00
6.13
527
528
4.148825
CCACCTTCTCCTCCGCCG
62.149
72.222
0.00
0.00
0.00
6.46
528
529
2.683933
TCCACCTTCTCCTCCGCC
60.684
66.667
0.00
0.00
0.00
6.13
529
530
2.283529
TGTCCACCTTCTCCTCCGC
61.284
63.158
0.00
0.00
0.00
5.54
530
531
1.592223
GTGTCCACCTTCTCCTCCG
59.408
63.158
0.00
0.00
0.00
4.63
541
542
4.629523
TTTCCCGCCGGTGTCCAC
62.630
66.667
15.14
0.00
0.00
4.02
542
543
4.323477
CTTTCCCGCCGGTGTCCA
62.323
66.667
15.14
0.00
0.00
4.02
548
549
4.547367
CTAGCCCTTTCCCGCCGG
62.547
72.222
0.00
0.00
0.00
6.13
549
550
4.547367
CCTAGCCCTTTCCCGCCG
62.547
72.222
0.00
0.00
0.00
6.46
550
551
4.191015
CCCTAGCCCTTTCCCGCC
62.191
72.222
0.00
0.00
0.00
6.13
551
552
4.191015
CCCCTAGCCCTTTCCCGC
62.191
72.222
0.00
0.00
0.00
6.13
552
553
1.984288
CTTCCCCTAGCCCTTTCCCG
61.984
65.000
0.00
0.00
0.00
5.14
553
554
1.646367
CCTTCCCCTAGCCCTTTCCC
61.646
65.000
0.00
0.00
0.00
3.97
554
555
1.646367
CCCTTCCCCTAGCCCTTTCC
61.646
65.000
0.00
0.00
0.00
3.13
555
556
1.646367
CCCCTTCCCCTAGCCCTTTC
61.646
65.000
0.00
0.00
0.00
2.62
556
557
1.622752
CCCCTTCCCCTAGCCCTTT
60.623
63.158
0.00
0.00
0.00
3.11
557
558
2.044620
CCCCTTCCCCTAGCCCTT
59.955
66.667
0.00
0.00
0.00
3.95
558
559
4.845307
GCCCCTTCCCCTAGCCCT
62.845
72.222
0.00
0.00
0.00
5.19
559
560
4.845307
AGCCCCTTCCCCTAGCCC
62.845
72.222
0.00
0.00
0.00
5.19
560
561
3.172106
GAGCCCCTTCCCCTAGCC
61.172
72.222
0.00
0.00
0.00
3.93
561
562
3.551407
CGAGCCCCTTCCCCTAGC
61.551
72.222
0.00
0.00
0.00
3.42
562
563
3.551407
GCGAGCCCCTTCCCCTAG
61.551
72.222
0.00
0.00
0.00
3.02
563
564
4.089757
AGCGAGCCCCTTCCCCTA
62.090
66.667
0.00
0.00
0.00
3.53
572
573
1.878656
ATATACCAGCGAGCGAGCCC
61.879
60.000
2.87
0.00
38.01
5.19
573
574
0.456995
GATATACCAGCGAGCGAGCC
60.457
60.000
2.87
0.00
38.01
4.70
574
575
0.241213
TGATATACCAGCGAGCGAGC
59.759
55.000
0.00
0.00
37.41
5.03
575
576
2.706555
TTGATATACCAGCGAGCGAG
57.293
50.000
0.00
0.00
0.00
5.03
576
577
2.100087
TGTTTGATATACCAGCGAGCGA
59.900
45.455
0.00
0.00
0.00
4.93
577
578
2.218759
GTGTTTGATATACCAGCGAGCG
59.781
50.000
0.00
0.00
0.00
5.03
578
579
3.194861
TGTGTTTGATATACCAGCGAGC
58.805
45.455
0.00
0.00
0.00
5.03
579
580
5.220662
CCTTTGTGTTTGATATACCAGCGAG
60.221
44.000
0.00
0.00
0.00
5.03
580
581
4.634004
CCTTTGTGTTTGATATACCAGCGA
59.366
41.667
0.00
0.00
0.00
4.93
581
582
4.634004
TCCTTTGTGTTTGATATACCAGCG
59.366
41.667
0.00
0.00
0.00
5.18
582
583
6.511767
CGATCCTTTGTGTTTGATATACCAGC
60.512
42.308
0.00
0.00
0.00
4.85
583
584
6.761242
TCGATCCTTTGTGTTTGATATACCAG
59.239
38.462
0.00
0.00
0.00
4.00
584
585
6.645306
TCGATCCTTTGTGTTTGATATACCA
58.355
36.000
0.00
0.00
0.00
3.25
585
586
6.984474
TCTCGATCCTTTGTGTTTGATATACC
59.016
38.462
0.00
0.00
0.00
2.73
586
587
8.420374
TTCTCGATCCTTTGTGTTTGATATAC
57.580
34.615
0.00
0.00
0.00
1.47
587
588
9.443323
TTTTCTCGATCCTTTGTGTTTGATATA
57.557
29.630
0.00
0.00
0.00
0.86
588
589
7.921786
TTTCTCGATCCTTTGTGTTTGATAT
57.078
32.000
0.00
0.00
0.00
1.63
599
600
4.697352
CCATGTCACTTTTCTCGATCCTTT
59.303
41.667
0.00
0.00
0.00
3.11
662
663
1.369625
GTCCCGAACGCTGATTCAAT
58.630
50.000
0.00
0.00
0.00
2.57
687
688
3.805971
GGACCAAACGAGGGATTATAACG
59.194
47.826
0.00
0.00
0.00
3.18
702
913
6.364701
TCTCTTCATTTTTGAGAGGACCAAA
58.635
36.000
0.00
0.00
33.53
3.28
711
922
4.757149
ACGGGTTCTCTCTTCATTTTTGAG
59.243
41.667
0.00
0.00
0.00
3.02
712
923
4.714632
ACGGGTTCTCTCTTCATTTTTGA
58.285
39.130
0.00
0.00
0.00
2.69
713
924
5.389516
CGTACGGGTTCTCTCTTCATTTTTG
60.390
44.000
7.57
0.00
0.00
2.44
718
929
1.134560
GCGTACGGGTTCTCTCTTCAT
59.865
52.381
18.39
0.00
0.00
2.57
726
1182
0.392060
GGGAAATGCGTACGGGTTCT
60.392
55.000
18.39
0.00
0.00
3.01
729
1185
0.034863
ATTGGGAAATGCGTACGGGT
60.035
50.000
18.39
0.00
0.00
5.28
730
1186
1.871039
CTATTGGGAAATGCGTACGGG
59.129
52.381
18.39
0.00
0.00
5.28
732
1188
4.055360
TGATCTATTGGGAAATGCGTACG
58.945
43.478
11.84
11.84
0.00
3.67
750
1206
4.547956
CGAAGCGGTTATCGTAATGATC
57.452
45.455
0.00
0.00
41.72
2.92
758
1214
1.151777
ATGCCACGAAGCGGTTATCG
61.152
55.000
0.00
3.05
44.33
2.92
759
1215
0.304705
CATGCCACGAAGCGGTTATC
59.695
55.000
0.00
0.00
34.65
1.75
760
1216
1.095228
CCATGCCACGAAGCGGTTAT
61.095
55.000
0.00
0.00
34.65
1.89
761
1217
1.743623
CCATGCCACGAAGCGGTTA
60.744
57.895
0.00
0.00
34.65
2.85
762
1218
2.457743
TACCATGCCACGAAGCGGTT
62.458
55.000
0.00
0.00
34.65
4.44
763
1219
2.252072
ATACCATGCCACGAAGCGGT
62.252
55.000
0.00
0.00
34.65
5.68
764
1220
1.498865
GATACCATGCCACGAAGCGG
61.499
60.000
0.00
0.00
34.65
5.52
765
1221
1.821241
CGATACCATGCCACGAAGCG
61.821
60.000
0.00
0.00
34.65
4.68
766
1222
0.810031
ACGATACCATGCCACGAAGC
60.810
55.000
0.00
0.00
0.00
3.86
767
1223
0.930310
CACGATACCATGCCACGAAG
59.070
55.000
0.00
0.00
0.00
3.79
768
1224
0.248012
ACACGATACCATGCCACGAA
59.752
50.000
0.00
0.00
0.00
3.85
769
1225
0.248012
AACACGATACCATGCCACGA
59.752
50.000
0.00
0.00
0.00
4.35
790
1246
7.867752
ACGAAGACGATCAAAGGAAAAATAAA
58.132
30.769
0.00
0.00
42.66
1.40
791
1247
7.429636
ACGAAGACGATCAAAGGAAAAATAA
57.570
32.000
0.00
0.00
42.66
1.40
792
1248
8.712285
ATACGAAGACGATCAAAGGAAAAATA
57.288
30.769
0.00
0.00
42.66
1.40
793
1249
5.941948
ACGAAGACGATCAAAGGAAAAAT
57.058
34.783
0.00
0.00
42.66
1.82
806
1262
4.530388
CGGCAATAGTTATACGAAGACGA
58.470
43.478
0.00
0.00
42.66
4.20
813
1269
3.655276
ACCTCCGGCAATAGTTATACG
57.345
47.619
0.00
0.00
0.00
3.06
845
1304
4.086706
AGAGGCGGAGGGTTAATAATTG
57.913
45.455
0.00
0.00
0.00
2.32
874
1597
1.374947
CGTGATGGGTGGGAACTGT
59.625
57.895
0.00
0.00
0.00
3.55
900
1631
0.769247
AGGGAAAGTTAAGGCGGTGT
59.231
50.000
0.00
0.00
0.00
4.16
901
1632
1.003233
AGAGGGAAAGTTAAGGCGGTG
59.997
52.381
0.00
0.00
0.00
4.94
902
1633
1.359168
AGAGGGAAAGTTAAGGCGGT
58.641
50.000
0.00
0.00
0.00
5.68
1613
2352
3.007182
AGGGTTTTGCAGCGTAGTAGTAA
59.993
43.478
0.00
0.00
0.00
2.24
1662
2401
2.037511
TCCCGATGTACGAAACAGGTTT
59.962
45.455
0.00
0.00
42.70
3.27
1867
2648
6.065153
CGTCTTCAGATTTTGTGTTAGAACG
58.935
40.000
0.00
0.00
0.00
3.95
1927
2718
2.098117
GCACAAGGATGATGGTACTTGC
59.902
50.000
0.00
0.00
42.63
4.01
1937
2730
4.068599
TCGTTATTGTTGCACAAGGATGA
58.931
39.130
7.58
6.57
41.94
2.92
2083
2880
9.220767
AGATCTGACAAATCCTACAGTTTTAAC
57.779
33.333
0.00
0.00
0.00
2.01
2300
3127
5.450137
GCCTGGATCTCATGTTGAAGAAATG
60.450
44.000
0.00
0.00
0.00
2.32
2301
3128
4.643784
GCCTGGATCTCATGTTGAAGAAAT
59.356
41.667
0.00
0.00
0.00
2.17
2302
3129
4.012374
GCCTGGATCTCATGTTGAAGAAA
58.988
43.478
0.00
0.00
0.00
2.52
2311
3138
0.179001
TGCATGGCCTGGATCTCATG
60.179
55.000
3.32
6.63
39.74
3.07
2562
3526
1.202417
ACGAGCACGAATGGGTATGAG
60.202
52.381
11.40
0.00
42.66
2.90
2645
3653
4.338400
TCTGGACCATGTAATCTCTACACG
59.662
45.833
0.00
0.00
0.00
4.49
2662
3671
4.274950
TCACGAAAAGGAACAAATCTGGAC
59.725
41.667
0.00
0.00
0.00
4.02
2870
4020
1.798223
TCAACACGCCTCATTTTCGAG
59.202
47.619
0.00
0.00
0.00
4.04
2882
4032
5.741982
AGTTTACATCAACTTTTCAACACGC
59.258
36.000
0.00
0.00
32.81
5.34
3315
5007
4.263331
CCCCTGTACTTTACCACAATCAGT
60.263
45.833
0.00
0.00
0.00
3.41
3914
5610
2.668550
GCTCCTCAAAACGGGCGT
60.669
61.111
0.00
0.00
0.00
5.68
4175
5871
1.072331
GGAGCAAGTCCTTCACCTTCA
59.928
52.381
0.00
0.00
42.99
3.02
4917
6651
8.097038
AGACATGCAACCGATATATAAGTTCAT
58.903
33.333
0.00
3.32
0.00
2.57
5124
6867
2.095532
CGTAGTAACCTCACCAGAGACG
59.904
54.545
0.00
0.00
44.98
4.18
5137
6880
7.007099
GCATTTTTATGTGTTGAGCGTAGTAAC
59.993
37.037
0.00
0.00
0.00
2.50
5211
6954
1.347378
TCAGCCACTGTTCTGTATGCA
59.653
47.619
0.00
0.00
32.61
3.96
5217
6960
1.605710
CAAGGTTCAGCCACTGTTCTG
59.394
52.381
0.00
1.54
40.61
3.02
5245
6988
4.999950
AGACAGAAAAGGCATCAGTACAAG
59.000
41.667
0.00
0.00
0.00
3.16
5272
7015
5.090652
TCATTAGATAAAAATGGCGACGC
57.909
39.130
12.43
12.43
35.48
5.19
5274
7017
9.599322
CTGTATTCATTAGATAAAAATGGCGAC
57.401
33.333
0.00
0.00
35.48
5.19
5304
7047
7.702348
ACTTGTTGAAATGTAAAAGTTCTCTGC
59.298
33.333
0.00
0.00
33.95
4.26
5344
7087
5.069648
TCAAAACACCAAAATCAGCCACATA
59.930
36.000
0.00
0.00
0.00
2.29
5389
7132
5.885465
ACTTTCAGATGGAGGTCAAATCTT
58.115
37.500
0.00
0.00
0.00
2.40
5394
7137
5.874810
CGAAATACTTTCAGATGGAGGTCAA
59.125
40.000
1.06
0.00
39.63
3.18
5399
7142
7.559590
AATTCCGAAATACTTTCAGATGGAG
57.440
36.000
1.06
0.00
39.63
3.86
5401
7144
7.698130
GTCAAATTCCGAAATACTTTCAGATGG
59.302
37.037
1.06
0.00
39.63
3.51
5420
7163
4.929819
ACGGTAGCAAAAAGGTCAAATT
57.070
36.364
0.00
0.00
0.00
1.82
5423
7166
3.816523
CCTAACGGTAGCAAAAAGGTCAA
59.183
43.478
0.59
0.00
0.00
3.18
5439
7182
1.003116
CTACCGTCATCGACCCTAACG
60.003
57.143
0.00
0.00
39.71
3.18
5440
7183
1.336125
CCTACCGTCATCGACCCTAAC
59.664
57.143
0.00
0.00
39.71
2.34
5441
7184
1.683943
CCTACCGTCATCGACCCTAA
58.316
55.000
0.00
0.00
39.71
2.69
5442
7185
0.179009
CCCTACCGTCATCGACCCTA
60.179
60.000
0.00
0.00
39.71
3.53
5443
7186
1.455217
CCCTACCGTCATCGACCCT
60.455
63.158
0.00
0.00
39.71
4.34
5444
7187
0.466189
TACCCTACCGTCATCGACCC
60.466
60.000
0.00
0.00
39.71
4.46
5445
7188
0.665298
GTACCCTACCGTCATCGACC
59.335
60.000
0.00
0.00
39.71
4.79
5446
7189
1.382522
TGTACCCTACCGTCATCGAC
58.617
55.000
0.00
0.00
39.71
4.20
5447
7190
1.745087
GTTGTACCCTACCGTCATCGA
59.255
52.381
0.00
0.00
39.71
3.59
5448
7191
1.473677
TGTTGTACCCTACCGTCATCG
59.526
52.381
0.00
0.00
0.00
3.84
5449
7192
2.737679
GCTGTTGTACCCTACCGTCATC
60.738
54.545
0.00
0.00
0.00
2.92
5450
7193
1.206371
GCTGTTGTACCCTACCGTCAT
59.794
52.381
0.00
0.00
0.00
3.06
5451
7194
0.604578
GCTGTTGTACCCTACCGTCA
59.395
55.000
0.00
0.00
0.00
4.35
5452
7195
0.108472
GGCTGTTGTACCCTACCGTC
60.108
60.000
0.00
0.00
0.00
4.79
5453
7196
0.543646
AGGCTGTTGTACCCTACCGT
60.544
55.000
0.00
0.00
0.00
4.83
5454
7197
1.135721
GTAGGCTGTTGTACCCTACCG
59.864
57.143
12.04
0.00
43.31
4.02
5455
7198
2.975732
GTAGGCTGTTGTACCCTACC
57.024
55.000
12.04
0.00
43.31
3.18
5456
7199
1.135721
CGGTAGGCTGTTGTACCCTAC
59.864
57.143
13.87
13.87
46.60
3.18
5457
7200
1.477553
CGGTAGGCTGTTGTACCCTA
58.522
55.000
0.00
0.00
36.12
3.53
5458
7201
1.896122
GCGGTAGGCTGTTGTACCCT
61.896
60.000
0.00
0.00
36.12
4.34
5459
7202
1.449070
GCGGTAGGCTGTTGTACCC
60.449
63.158
0.00
0.00
36.12
3.69
5460
7203
1.449070
GGCGGTAGGCTGTTGTACC
60.449
63.158
0.00
0.00
42.94
3.34
5461
7204
1.808390
CGGCGGTAGGCTGTTGTAC
60.808
63.158
0.00
0.00
43.36
2.90
5462
7205
2.574929
CGGCGGTAGGCTGTTGTA
59.425
61.111
0.00
0.00
43.36
2.41
5469
7212
4.171103
ATCAACCCGGCGGTAGGC
62.171
66.667
26.32
0.00
43.71
3.93
5470
7213
2.203015
CATCAACCCGGCGGTAGG
60.203
66.667
26.32
12.44
43.71
3.18
5471
7214
2.203015
CCATCAACCCGGCGGTAG
60.203
66.667
26.32
13.26
43.71
3.18
5472
7215
4.476752
GCCATCAACCCGGCGGTA
62.477
66.667
26.32
7.62
43.71
4.02
5476
7219
4.476752
TACCGCCATCAACCCGGC
62.477
66.667
0.00
0.00
45.58
6.13
5477
7220
2.203015
CTACCGCCATCAACCCGG
60.203
66.667
0.00
0.00
46.97
5.73
5478
7221
2.895372
GCTACCGCCATCAACCCG
60.895
66.667
0.00
0.00
0.00
5.28
5483
7226
1.743623
CCGTTTGCTACCGCCATCA
60.744
57.895
0.00
0.00
34.43
3.07
5491
7234
2.558378
GGGATCTAACCCGTTTGCTAC
58.442
52.381
0.00
0.00
40.49
3.58
5511
7254
3.181473
TGACCCCATCCGTAAGTATTTCG
60.181
47.826
0.00
0.00
38.66
3.46
5521
7288
1.002921
TGGATCTGACCCCATCCGT
59.997
57.895
0.00
0.00
41.55
4.69
5523
7290
1.059006
AGCTGGATCTGACCCCATCC
61.059
60.000
1.69
0.00
39.38
3.51
5544
7311
7.582319
CCGTGTTTTGACATTTTTGCTAAAATC
59.418
33.333
14.69
7.71
40.97
2.17
5575
7343
1.664321
CCTACCGTCAAGGACCCTCG
61.664
65.000
0.00
0.00
45.00
4.63
5622
7390
5.175673
GTCTTGACATTTTTGCTAAAGTGCC
59.824
40.000
14.25
5.89
35.15
5.01
5634
7402
5.288804
CCAATTTCCGTGTCTTGACATTTT
58.711
37.500
6.74
0.00
0.00
1.82
5636
7404
3.305335
GCCAATTTCCGTGTCTTGACATT
60.305
43.478
6.74
0.00
0.00
2.71
5644
7412
0.804989
CAGGAGCCAATTTCCGTGTC
59.195
55.000
0.00
0.00
39.77
3.67
5663
7431
2.273449
CCTGCTGGACCCACATCC
59.727
66.667
2.92
0.00
39.45
3.51
5715
7483
4.063529
TGGTACACTTGCAGCAGC
57.936
55.556
0.00
0.00
42.57
5.25
5726
7494
2.749776
CATGAACACTGTCGTGGTACA
58.250
47.619
0.00
0.00
42.25
2.90
5729
7497
0.106708
AGCATGAACACTGTCGTGGT
59.893
50.000
0.00
0.00
45.63
4.16
5730
7498
0.514255
CAGCATGAACACTGTCGTGG
59.486
55.000
0.00
0.00
41.96
4.94
5731
7499
0.110509
GCAGCATGAACACTGTCGTG
60.111
55.000
0.00
0.00
42.94
4.35
5732
7500
0.532640
TGCAGCATGAACACTGTCGT
60.533
50.000
0.00
0.00
39.69
4.34
5735
7503
2.689471
TCTTTTGCAGCATGAACACTGT
59.311
40.909
0.00
0.00
39.69
3.55
5736
7504
3.047796
GTCTTTTGCAGCATGAACACTG
58.952
45.455
0.00
0.00
39.69
3.66
5737
7505
2.954318
AGTCTTTTGCAGCATGAACACT
59.046
40.909
0.00
0.00
39.69
3.55
5738
7506
3.360249
AGTCTTTTGCAGCATGAACAC
57.640
42.857
0.00
0.00
39.69
3.32
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.