Multiple sequence alignment - TraesCS4B01G206200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G206200 chr4B 100.000 5478 0 0 1 5478 438372477 438377954 0.000000e+00 10117.0
1 TraesCS4B01G206200 chr4A 93.320 4491 171 45 387 4814 109852523 109848099 0.000000e+00 6512.0
2 TraesCS4B01G206200 chr4A 93.711 159 9 1 2699 2857 690411284 690411441 2.550000e-58 237.0
3 TraesCS4B01G206200 chr4A 84.106 151 23 1 11 161 729540169 729540020 1.590000e-30 145.0
4 TraesCS4B01G206200 chr4D 92.650 2721 107 26 2040 4726 354879993 354882654 0.000000e+00 3831.0
5 TraesCS4B01G206200 chr4D 93.111 1829 64 22 237 2041 354877708 354879498 0.000000e+00 2623.0
6 TraesCS4B01G206200 chr4D 90.591 457 39 4 5025 5478 354882967 354883422 2.180000e-168 603.0
7 TraesCS4B01G206200 chr4D 94.839 155 7 1 2704 2857 74079350 74079504 1.970000e-59 241.0
8 TraesCS4B01G206200 chr4D 93.243 148 9 1 1 147 354872240 354872387 3.320000e-52 217.0
9 TraesCS4B01G206200 chr4D 82.759 261 12 15 4715 4943 354882709 354882968 9.300000e-48 202.0
10 TraesCS4B01G206200 chr4D 96.226 53 1 1 144 196 354877598 354877649 9.780000e-13 86.1
11 TraesCS4B01G206200 chr2D 96.078 153 6 0 2705 2857 79056167 79056319 3.280000e-62 250.0
12 TraesCS4B01G206200 chr3B 94.805 154 8 0 2705 2858 245935461 245935614 1.970000e-59 241.0
13 TraesCS4B01G206200 chr3B 93.789 161 8 1 2702 2860 328715441 328715601 1.970000e-59 241.0
14 TraesCS4B01G206200 chr3B 86.957 115 13 2 4927 5039 116817512 116817398 1.600000e-25 128.0
15 TraesCS4B01G206200 chr3B 100.000 48 0 0 1113 1160 767127885 767127932 7.560000e-14 89.8
16 TraesCS4B01G206200 chr7D 93.711 159 10 0 2699 2857 34373312 34373470 7.090000e-59 239.0
17 TraesCS4B01G206200 chr7D 93.210 162 11 0 2699 2860 34757024 34756863 7.090000e-59 239.0
18 TraesCS4B01G206200 chrUn 83.735 166 21 3 26 187 351137422 351137259 9.500000e-33 152.0
19 TraesCS4B01G206200 chrUn 89.623 106 8 3 4935 5040 135090808 135090706 1.240000e-26 132.0
20 TraesCS4B01G206200 chrUn 89.623 106 8 3 4935 5040 152687664 152687562 1.240000e-26 132.0
21 TraesCS4B01G206200 chrUn 88.750 80 2 4 1108 1187 40347833 40347761 2.100000e-14 91.6
22 TraesCS4B01G206200 chr3D 86.429 140 17 2 25 163 14995124 14995262 9.500000e-33 152.0
23 TraesCS4B01G206200 chr3D 91.176 102 8 1 4934 5035 361660760 361660860 2.660000e-28 137.0
24 TraesCS4B01G206200 chr3D 100.000 28 0 0 245 272 355441668 355441641 1.000000e-02 52.8
25 TraesCS4B01G206200 chr6B 84.106 151 23 1 11 161 720058270 720058419 1.590000e-30 145.0
26 TraesCS4B01G206200 chr6B 80.864 162 30 1 1 161 422563411 422563572 5.760000e-25 126.0
27 TraesCS4B01G206200 chr6B 89.333 75 2 3 1113 1187 78507949 78507881 7.560000e-14 89.8
28 TraesCS4B01G206200 chr6B 100.000 28 0 0 244 271 80353463 80353436 1.000000e-02 52.8
29 TraesCS4B01G206200 chr7B 92.857 98 5 2 4929 5026 208276696 208276791 2.060000e-29 141.0
30 TraesCS4B01G206200 chr7B 81.383 188 22 4 31 210 693030635 693030453 2.060000e-29 141.0
31 TraesCS4B01G206200 chr7A 93.548 93 6 0 4934 5026 155147892 155147984 7.400000e-29 139.0
32 TraesCS4B01G206200 chr1B 93.548 93 6 0 4934 5026 631232769 631232677 7.400000e-29 139.0
33 TraesCS4B01G206200 chr5B 91.919 99 6 2 4938 5035 682698713 682698810 2.660000e-28 137.0
34 TraesCS4B01G206200 chr5B 100.000 48 0 0 1113 1160 681847626 681847673 7.560000e-14 89.8
35 TraesCS4B01G206200 chr2A 90.196 102 9 1 4925 5026 71793778 71793878 1.240000e-26 132.0
36 TraesCS4B01G206200 chr1A 85.833 120 17 0 11 130 554107420 554107539 1.600000e-25 128.0
37 TraesCS4B01G206200 chr6D 82.857 140 22 2 33 172 269802676 269802813 2.070000e-24 124.0
38 TraesCS4B01G206200 chr6A 98.077 52 0 1 1108 1159 148689365 148689415 7.560000e-14 89.8
39 TraesCS4B01G206200 chr2B 98.077 52 0 1 1108 1159 759311095 759311145 7.560000e-14 89.8
40 TraesCS4B01G206200 chr2B 95.000 40 1 1 5393 5431 653664438 653664399 1.650000e-05 62.1
41 TraesCS4B01G206200 chr5A 89.189 74 2 3 1114 1187 98739616 98739549 2.720000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G206200 chr4B 438372477 438377954 5477 False 10117.00 10117 100.0000 1 5478 1 chr4B.!!$F1 5477
1 TraesCS4B01G206200 chr4A 109848099 109852523 4424 True 6512.00 6512 93.3200 387 4814 1 chr4A.!!$R1 4427
2 TraesCS4B01G206200 chr4D 354877598 354883422 5824 False 1469.02 3831 91.0674 144 5478 5 chr4D.!!$F3 5334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.107017 CGGGGATGAAATGAGCACCT 60.107 55.000 0.00 0.00 0.00 4.00 F
212 213 0.249447 GACCAGCCCAAAAGTGCAAC 60.249 55.000 0.00 0.00 0.00 4.17 F
214 215 0.249573 CCAGCCCAAAAGTGCAACAG 60.250 55.000 0.00 0.00 41.43 3.16 F
216 217 0.396974 AGCCCAAAAGTGCAACAGGA 60.397 50.000 0.00 0.00 41.43 3.86 F
881 959 0.538977 CCCCGTCCGGCTCTATTCTA 60.539 60.000 0.00 0.00 0.00 2.10 F
882 960 0.597072 CCCGTCCGGCTCTATTCTAC 59.403 60.000 0.00 0.00 0.00 2.59 F
2464 3064 1.303643 GGAAGGTCAACCCAGCTGG 60.304 63.158 26.87 26.87 41.37 4.85 F
3111 3721 0.035439 ATACCTGTTCTTGCCCGTGG 60.035 55.000 0.00 0.00 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2090 0.242825 TCGTTGCAGAGTTACGGAGG 59.757 55.000 7.93 0.00 36.06 4.30 R
2031 2120 3.253188 GCAACAGCTGAAATACTTGGTGA 59.747 43.478 23.35 0.00 0.00 4.02 R
2076 2661 3.581024 ACACCAATGCTGCAGTATTTG 57.419 42.857 25.19 23.35 0.00 2.32 R
2241 2830 8.854979 TTTACACAAAATGATGAAGTTCACTG 57.145 30.769 7.96 2.09 0.00 3.66 R
2621 3231 0.246635 TAGCAGTCGCCAGTCCTTTC 59.753 55.000 0.00 0.00 39.83 2.62 R
2692 3302 4.004982 CGGAGGGAGTAGAAGATAGCTAC 58.995 52.174 0.00 0.00 38.76 3.58 R
3659 4273 0.035915 GTGTCCCTTCTCTGGGCTTC 60.036 60.000 0.00 0.00 46.67 3.86 R
5099 5840 0.390860 GCATGTGATCCTAGCCTCGT 59.609 55.000 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.736483 CCGCGGGGATGAAATGAG 58.264 61.111 20.10 0.00 34.06 2.90
40 41 2.546494 CCGCGGGGATGAAATGAGC 61.546 63.158 20.10 0.00 34.06 4.26
41 42 1.819208 CGCGGGGATGAAATGAGCA 60.819 57.895 0.00 0.00 0.00 4.26
42 43 1.729881 GCGGGGATGAAATGAGCAC 59.270 57.895 0.00 0.00 0.00 4.40
43 44 1.728490 GCGGGGATGAAATGAGCACC 61.728 60.000 0.00 0.00 0.00 5.01
44 45 0.107017 CGGGGATGAAATGAGCACCT 60.107 55.000 0.00 0.00 0.00 4.00
45 46 1.396653 GGGGATGAAATGAGCACCTG 58.603 55.000 0.00 0.00 0.00 4.00
46 47 0.743097 GGGATGAAATGAGCACCTGC 59.257 55.000 0.00 0.00 42.49 4.85
56 57 4.208632 GCACCTGCGCAAGAGTAT 57.791 55.556 14.09 0.00 43.02 2.12
57 58 2.009888 GCACCTGCGCAAGAGTATC 58.990 57.895 14.09 2.28 43.02 2.24
58 59 0.740868 GCACCTGCGCAAGAGTATCA 60.741 55.000 14.09 0.00 37.82 2.15
59 60 1.945387 CACCTGCGCAAGAGTATCAT 58.055 50.000 14.09 0.00 37.82 2.45
60 61 2.283298 CACCTGCGCAAGAGTATCATT 58.717 47.619 14.09 0.00 37.82 2.57
61 62 2.286294 CACCTGCGCAAGAGTATCATTC 59.714 50.000 14.09 0.00 37.82 2.67
62 63 2.169352 ACCTGCGCAAGAGTATCATTCT 59.831 45.455 14.09 0.00 37.82 2.40
63 64 3.201290 CCTGCGCAAGAGTATCATTCTT 58.799 45.455 13.05 0.00 37.82 2.52
64 65 4.141937 ACCTGCGCAAGAGTATCATTCTTA 60.142 41.667 14.09 0.00 37.82 2.10
65 66 4.993584 CCTGCGCAAGAGTATCATTCTTAT 59.006 41.667 13.05 0.00 37.82 1.73
66 67 5.119898 CCTGCGCAAGAGTATCATTCTTATC 59.880 44.000 13.05 0.00 37.82 1.75
67 68 5.600696 TGCGCAAGAGTATCATTCTTATCA 58.399 37.500 8.16 0.00 37.82 2.15
68 69 6.226052 TGCGCAAGAGTATCATTCTTATCAT 58.774 36.000 8.16 0.00 37.82 2.45
69 70 6.146673 TGCGCAAGAGTATCATTCTTATCATG 59.853 38.462 8.16 0.00 37.82 3.07
70 71 6.367149 GCGCAAGAGTATCATTCTTATCATGA 59.633 38.462 0.30 0.00 37.82 3.07
71 72 7.095481 GCGCAAGAGTATCATTCTTATCATGAA 60.095 37.037 0.30 0.00 37.82 2.57
72 73 8.219769 CGCAAGAGTATCATTCTTATCATGAAC 58.780 37.037 0.00 0.00 37.82 3.18
73 74 9.049523 GCAAGAGTATCATTCTTATCATGAACA 57.950 33.333 0.00 0.00 37.82 3.18
78 79 8.820933 AGTATCATTCTTATCATGAACAACACG 58.179 33.333 0.00 0.00 34.31 4.49
79 80 6.421377 TCATTCTTATCATGAACAACACGG 57.579 37.500 0.00 0.00 0.00 4.94
80 81 5.937540 TCATTCTTATCATGAACAACACGGT 59.062 36.000 0.00 0.00 0.00 4.83
81 82 7.100409 TCATTCTTATCATGAACAACACGGTA 58.900 34.615 0.00 0.00 0.00 4.02
82 83 6.715344 TTCTTATCATGAACAACACGGTAC 57.285 37.500 0.00 0.00 0.00 3.34
83 84 5.785243 TCTTATCATGAACAACACGGTACA 58.215 37.500 0.00 0.00 0.00 2.90
84 85 6.224584 TCTTATCATGAACAACACGGTACAA 58.775 36.000 0.00 0.00 0.00 2.41
85 86 6.706716 TCTTATCATGAACAACACGGTACAAA 59.293 34.615 0.00 0.00 0.00 2.83
86 87 5.759506 ATCATGAACAACACGGTACAAAA 57.240 34.783 0.00 0.00 0.00 2.44
87 88 5.759506 TCATGAACAACACGGTACAAAAT 57.240 34.783 0.00 0.00 0.00 1.82
88 89 6.137794 TCATGAACAACACGGTACAAAATT 57.862 33.333 0.00 0.00 0.00 1.82
89 90 5.974158 TCATGAACAACACGGTACAAAATTG 59.026 36.000 0.00 0.00 0.00 2.32
90 91 4.673441 TGAACAACACGGTACAAAATTGG 58.327 39.130 0.00 0.00 0.00 3.16
91 92 4.398358 TGAACAACACGGTACAAAATTGGA 59.602 37.500 0.00 0.00 0.00 3.53
92 93 5.067936 TGAACAACACGGTACAAAATTGGAT 59.932 36.000 0.00 0.00 0.00 3.41
93 94 6.262496 TGAACAACACGGTACAAAATTGGATA 59.738 34.615 0.00 0.00 0.00 2.59
94 95 6.827586 ACAACACGGTACAAAATTGGATAT 57.172 33.333 0.00 0.00 0.00 1.63
95 96 7.222000 ACAACACGGTACAAAATTGGATATT 57.778 32.000 0.00 0.00 0.00 1.28
96 97 7.087639 ACAACACGGTACAAAATTGGATATTG 58.912 34.615 0.00 0.00 0.00 1.90
97 98 6.827586 ACACGGTACAAAATTGGATATTGT 57.172 33.333 0.00 0.00 40.22 2.71
98 99 7.222000 ACACGGTACAAAATTGGATATTGTT 57.778 32.000 0.00 0.00 38.22 2.83
99 100 7.309920 ACACGGTACAAAATTGGATATTGTTC 58.690 34.615 0.00 0.00 38.22 3.18
100 101 7.175990 ACACGGTACAAAATTGGATATTGTTCT 59.824 33.333 0.00 0.00 38.22 3.01
101 102 7.696453 CACGGTACAAAATTGGATATTGTTCTC 59.304 37.037 0.00 0.00 38.22 2.87
102 103 6.905076 CGGTACAAAATTGGATATTGTTCTCG 59.095 38.462 0.00 0.00 38.22 4.04
103 104 7.193595 GGTACAAAATTGGATATTGTTCTCGG 58.806 38.462 0.00 0.00 38.22 4.63
104 105 7.066525 GGTACAAAATTGGATATTGTTCTCGGA 59.933 37.037 0.00 0.00 38.22 4.55
105 106 7.088589 ACAAAATTGGATATTGTTCTCGGAG 57.911 36.000 0.00 0.00 33.73 4.63
106 107 6.095440 ACAAAATTGGATATTGTTCTCGGAGG 59.905 38.462 4.96 0.00 33.73 4.30
107 108 5.373812 AATTGGATATTGTTCTCGGAGGT 57.626 39.130 4.96 0.00 0.00 3.85
108 109 4.837093 TTGGATATTGTTCTCGGAGGTT 57.163 40.909 4.96 0.00 0.00 3.50
109 110 4.137116 TGGATATTGTTCTCGGAGGTTG 57.863 45.455 4.96 0.00 0.00 3.77
110 111 3.118408 TGGATATTGTTCTCGGAGGTTGG 60.118 47.826 4.96 0.00 0.00 3.77
111 112 2.396590 TATTGTTCTCGGAGGTTGGC 57.603 50.000 4.96 0.00 0.00 4.52
112 113 0.400213 ATTGTTCTCGGAGGTTGGCA 59.600 50.000 4.96 0.00 0.00 4.92
113 114 0.400213 TTGTTCTCGGAGGTTGGCAT 59.600 50.000 4.96 0.00 0.00 4.40
114 115 0.400213 TGTTCTCGGAGGTTGGCATT 59.600 50.000 4.96 0.00 0.00 3.56
115 116 0.804989 GTTCTCGGAGGTTGGCATTG 59.195 55.000 4.96 0.00 0.00 2.82
116 117 0.322456 TTCTCGGAGGTTGGCATTGG 60.322 55.000 4.96 0.00 0.00 3.16
117 118 2.361104 TCGGAGGTTGGCATTGGC 60.361 61.111 2.73 2.73 40.13 4.52
118 119 2.361610 CGGAGGTTGGCATTGGCT 60.362 61.111 11.84 0.00 40.87 4.75
119 120 1.077787 CGGAGGTTGGCATTGGCTA 60.078 57.895 11.84 0.48 40.87 3.93
120 121 1.097547 CGGAGGTTGGCATTGGCTAG 61.098 60.000 11.84 0.00 40.87 3.42
121 122 1.387295 GGAGGTTGGCATTGGCTAGC 61.387 60.000 6.04 6.04 40.87 3.42
131 132 4.816109 TGGCTAGCCAGATGTCCT 57.184 55.556 32.88 0.00 41.89 3.85
132 133 2.521103 TGGCTAGCCAGATGTCCTC 58.479 57.895 32.88 2.62 41.89 3.71
133 134 1.050988 TGGCTAGCCAGATGTCCTCC 61.051 60.000 32.88 2.05 41.89 4.30
134 135 1.751563 GCTAGCCAGATGTCCTCCC 59.248 63.158 2.29 0.00 0.00 4.30
135 136 1.050988 GCTAGCCAGATGTCCTCCCA 61.051 60.000 2.29 0.00 0.00 4.37
136 137 1.047002 CTAGCCAGATGTCCTCCCAG 58.953 60.000 0.00 0.00 0.00 4.45
137 138 0.636647 TAGCCAGATGTCCTCCCAGA 59.363 55.000 0.00 0.00 0.00 3.86
138 139 0.252881 AGCCAGATGTCCTCCCAGAA 60.253 55.000 0.00 0.00 0.00 3.02
139 140 0.620556 GCCAGATGTCCTCCCAGAAA 59.379 55.000 0.00 0.00 0.00 2.52
140 141 1.213926 GCCAGATGTCCTCCCAGAAAT 59.786 52.381 0.00 0.00 0.00 2.17
141 142 2.928334 CCAGATGTCCTCCCAGAAATG 58.072 52.381 0.00 0.00 0.00 2.32
142 143 2.507058 CCAGATGTCCTCCCAGAAATGA 59.493 50.000 0.00 0.00 0.00 2.57
147 148 4.494091 TGTCCTCCCAGAAATGAATCTC 57.506 45.455 0.00 0.00 0.00 2.75
166 167 0.390209 CCGACCCGTCATTTTACCGT 60.390 55.000 0.00 0.00 0.00 4.83
200 201 3.481453 GAAAGGATCCATTAGACCAGCC 58.519 50.000 15.82 0.00 0.00 4.85
201 202 1.439543 AGGATCCATTAGACCAGCCC 58.560 55.000 15.82 0.00 0.00 5.19
202 203 1.140312 GGATCCATTAGACCAGCCCA 58.860 55.000 6.95 0.00 0.00 5.36
203 204 1.494721 GGATCCATTAGACCAGCCCAA 59.505 52.381 6.95 0.00 0.00 4.12
204 205 2.091885 GGATCCATTAGACCAGCCCAAA 60.092 50.000 6.95 0.00 0.00 3.28
205 206 3.627237 GGATCCATTAGACCAGCCCAAAA 60.627 47.826 6.95 0.00 0.00 2.44
206 207 3.085952 TCCATTAGACCAGCCCAAAAG 57.914 47.619 0.00 0.00 0.00 2.27
207 208 2.378547 TCCATTAGACCAGCCCAAAAGT 59.621 45.455 0.00 0.00 0.00 2.66
208 209 2.493278 CCATTAGACCAGCCCAAAAGTG 59.507 50.000 0.00 0.00 0.00 3.16
209 210 1.616159 TTAGACCAGCCCAAAAGTGC 58.384 50.000 0.00 0.00 0.00 4.40
210 211 0.476338 TAGACCAGCCCAAAAGTGCA 59.524 50.000 0.00 0.00 0.00 4.57
211 212 0.396974 AGACCAGCCCAAAAGTGCAA 60.397 50.000 0.00 0.00 0.00 4.08
212 213 0.249447 GACCAGCCCAAAAGTGCAAC 60.249 55.000 0.00 0.00 0.00 4.17
213 214 0.975040 ACCAGCCCAAAAGTGCAACA 60.975 50.000 0.00 0.00 41.43 3.33
214 215 0.249573 CCAGCCCAAAAGTGCAACAG 60.250 55.000 0.00 0.00 41.43 3.16
215 216 0.249573 CAGCCCAAAAGTGCAACAGG 60.250 55.000 0.00 0.00 41.43 4.00
216 217 0.396974 AGCCCAAAAGTGCAACAGGA 60.397 50.000 0.00 0.00 41.43 3.86
238 239 2.455674 TGTCAAACGACATCCTCAGG 57.544 50.000 0.00 0.00 38.50 3.86
239 240 1.691976 TGTCAAACGACATCCTCAGGT 59.308 47.619 0.00 0.00 38.50 4.00
240 241 2.104111 TGTCAAACGACATCCTCAGGTT 59.896 45.455 0.00 0.00 38.50 3.50
241 242 3.322541 TGTCAAACGACATCCTCAGGTTA 59.677 43.478 0.00 0.00 38.50 2.85
290 328 7.175104 AGAGAAGTAGCATTGGGATTACAAAA 58.825 34.615 0.00 0.00 33.48 2.44
316 365 2.035961 GTGCGTAAGAGGCATGATAGGA 59.964 50.000 0.00 0.00 41.30 2.94
318 367 3.133901 TGCGTAAGAGGCATGATAGGAAA 59.866 43.478 0.00 0.00 43.02 3.13
322 371 5.760253 CGTAAGAGGCATGATAGGAAACAAT 59.240 40.000 0.00 0.00 43.02 2.71
390 439 4.037565 GGTCACCTTGATCTTTCGGTTTTT 59.962 41.667 0.00 0.00 0.00 1.94
398 447 7.224557 CCTTGATCTTTCGGTTTTTCAAACAAT 59.775 33.333 0.00 0.00 0.00 2.71
400 449 7.261325 TGATCTTTCGGTTTTTCAAACAATGA 58.739 30.769 0.00 0.00 35.85 2.57
601 653 3.499157 TCTTGTCGTTCGGGGTTAATTTG 59.501 43.478 0.00 0.00 0.00 2.32
881 959 0.538977 CCCCGTCCGGCTCTATTCTA 60.539 60.000 0.00 0.00 0.00 2.10
882 960 0.597072 CCCGTCCGGCTCTATTCTAC 59.403 60.000 0.00 0.00 0.00 2.59
883 961 1.606903 CCGTCCGGCTCTATTCTACT 58.393 55.000 0.00 0.00 0.00 2.57
884 962 1.536331 CCGTCCGGCTCTATTCTACTC 59.464 57.143 0.00 0.00 0.00 2.59
1263 1344 1.338136 CGCTCTACCACCCCTGGAAT 61.338 60.000 0.00 0.00 40.55 3.01
1278 1359 2.947652 CTGGAATTACTACCTCGTCGGA 59.052 50.000 0.00 0.00 36.31 4.55
1566 1647 1.338020 CCCCCGATTAGCTTGCAATTC 59.662 52.381 0.00 0.00 0.00 2.17
1619 1700 7.941431 AGTATCTAGTACACTTGTTGTAGCT 57.059 36.000 0.00 0.00 41.58 3.32
1620 1701 8.350852 AGTATCTAGTACACTTGTTGTAGCTT 57.649 34.615 0.00 0.00 41.58 3.74
1621 1702 8.244802 AGTATCTAGTACACTTGTTGTAGCTTG 58.755 37.037 0.00 0.00 41.58 4.01
1622 1703 5.779922 TCTAGTACACTTGTTGTAGCTTGG 58.220 41.667 0.00 0.00 41.58 3.61
1623 1704 3.740115 AGTACACTTGTTGTAGCTTGGG 58.260 45.455 0.00 0.00 41.58 4.12
1624 1705 2.729028 ACACTTGTTGTAGCTTGGGT 57.271 45.000 0.00 0.00 36.32 4.51
1625 1706 2.572290 ACACTTGTTGTAGCTTGGGTC 58.428 47.619 0.00 0.00 36.32 4.46
1626 1707 2.172717 ACACTTGTTGTAGCTTGGGTCT 59.827 45.455 0.00 0.00 36.32 3.85
1631 1712 2.571653 TGTTGTAGCTTGGGTCTGCTAT 59.428 45.455 0.00 0.00 42.67 2.97
1730 1811 2.357327 TGTGTCACCTATCCGTTTCG 57.643 50.000 0.00 0.00 0.00 3.46
1774 1855 7.737869 TCTAGTTCTCTACCGTCTGATATCTT 58.262 38.462 3.98 0.00 0.00 2.40
1910 1991 5.730550 TGGTGTAGTCCAGTATTGCTAAAG 58.269 41.667 0.00 0.00 33.19 1.85
2031 2120 2.609459 CTCTGCAACGACACTCAAACTT 59.391 45.455 0.00 0.00 0.00 2.66
2076 2661 6.147492 TGCCATTGTCTCAATTAAATTGCAAC 59.853 34.615 0.00 0.00 40.05 4.17
2241 2830 4.201970 TGTTGTGCTGTGGTAAAAAGTAGC 60.202 41.667 0.00 0.00 0.00 3.58
2431 3031 5.885881 TGATGTTATGTTGGGATTTTACGC 58.114 37.500 0.00 0.00 0.00 4.42
2464 3064 1.303643 GGAAGGTCAACCCAGCTGG 60.304 63.158 26.87 26.87 41.37 4.85
2519 3119 9.851043 GACATGAAGCGTATCTTTTAGTAATTC 57.149 33.333 0.00 0.00 34.56 2.17
2610 3220 2.176045 TGAGGATTGAGTTAGCCGTGA 58.824 47.619 0.00 0.00 0.00 4.35
2621 3231 4.391155 AGTTAGCCGTGAGTCTCCTATAG 58.609 47.826 0.00 0.00 0.00 1.31
2692 3302 8.853469 AACGATAAGAAGTAGGAGTATTTTCG 57.147 34.615 0.00 0.00 0.00 3.46
2798 3408 6.071952 AGTGTGTTTGTTCACTCATTTCAGTT 60.072 34.615 0.00 0.00 40.28 3.16
2888 3498 4.377021 CCTAGTTATCAATACAGCGCCAA 58.623 43.478 2.29 0.00 0.00 4.52
3108 3718 1.821216 AACATACCTGTTCTTGCCCG 58.179 50.000 0.00 0.00 41.86 6.13
3111 3721 0.035439 ATACCTGTTCTTGCCCGTGG 60.035 55.000 0.00 0.00 0.00 4.94
3227 3837 2.029739 TCGGTGTGTTTCTTAGCGATCA 60.030 45.455 0.00 0.00 39.10 2.92
3241 3851 9.684448 TTCTTAGCGATCAGATATGTTCTTTAG 57.316 33.333 0.00 0.00 29.93 1.85
3279 3889 3.063704 TGCAGGCATCAAAGGGCG 61.064 61.111 0.00 0.00 35.71 6.13
3292 3902 0.911769 AAGGGCGAGACCAATCATCA 59.088 50.000 0.00 0.00 42.05 3.07
3310 3920 0.673985 CATGGATCCAGCATTGCAGG 59.326 55.000 21.33 13.56 36.52 4.85
3333 3943 5.355910 GGTCTCAAACAAAACTGAGGTTGTA 59.644 40.000 4.53 0.00 39.67 2.41
3418 4028 5.106237 TGCTTGTTTTGTACTTAACACGGTT 60.106 36.000 11.31 0.00 38.00 4.44
3659 4273 7.496529 TGATGGAAAAAGAGAGTTTGTGTAG 57.503 36.000 0.00 0.00 0.00 2.74
3729 4343 3.578716 AGTTGGTAGAAGTGCTGCTAGAA 59.421 43.478 0.00 0.00 0.00 2.10
3753 4367 2.672996 CCCCTGCTTTCACCCACG 60.673 66.667 0.00 0.00 0.00 4.94
3757 4371 1.227823 CTGCTTTCACCCACGGTCA 60.228 57.895 0.00 0.00 31.02 4.02
3788 4402 3.201290 CCTAATAGTGTCAAGCAGGCTG 58.799 50.000 10.94 10.94 0.00 4.85
3871 4502 5.752036 TCTCTTGAAGATGGAACTGACAT 57.248 39.130 0.00 0.00 0.00 3.06
4129 4760 3.908103 AGTACTACCAGAACACCACCATT 59.092 43.478 0.00 0.00 0.00 3.16
4132 4763 5.514500 ACTACCAGAACACCACCATTAAT 57.486 39.130 0.00 0.00 0.00 1.40
4134 4765 6.650120 ACTACCAGAACACCACCATTAATAG 58.350 40.000 0.00 0.00 0.00 1.73
4135 4766 4.270008 ACCAGAACACCACCATTAATAGC 58.730 43.478 0.00 0.00 0.00 2.97
4192 4823 1.374758 GCACCCTCTCAACCTGACG 60.375 63.158 0.00 0.00 0.00 4.35
4503 5134 6.447162 GCTCTTGTTACATTTAGCCAGTTTT 58.553 36.000 3.65 0.00 0.00 2.43
4552 5187 0.250989 CGGGGGCAAAAGTGTTCCTA 60.251 55.000 0.00 0.00 0.00 2.94
4662 5297 9.534565 GACTGAAATCATACATGTACACACTAT 57.465 33.333 7.96 0.00 0.00 2.12
4781 5489 5.243207 TCTAGGGTTTCTTTTCTTTAGCCG 58.757 41.667 0.00 0.00 0.00 5.52
4789 5497 6.549912 TTCTTTTCTTTAGCCGTAAACTCC 57.450 37.500 0.00 0.00 0.00 3.85
4833 5546 2.349297 GCTGTTAGCACGTACTCACT 57.651 50.000 0.00 0.00 41.89 3.41
4834 5547 2.251893 GCTGTTAGCACGTACTCACTC 58.748 52.381 0.00 0.00 41.89 3.51
4835 5548 2.864968 CTGTTAGCACGTACTCACTCC 58.135 52.381 0.00 0.00 0.00 3.85
4858 5571 7.741785 TCCGTCCCATAAGATGTTATTACAAT 58.258 34.615 0.00 0.00 37.91 2.71
4906 5646 7.448161 TGACAGTATGGTTGTTCTTCAATTCAT 59.552 33.333 0.00 0.00 43.62 2.57
4907 5647 7.596494 ACAGTATGGTTGTTCTTCAATTCATG 58.404 34.615 0.00 0.00 43.62 3.07
4908 5648 6.529125 CAGTATGGTTGTTCTTCAATTCATGC 59.471 38.462 0.00 0.00 38.38 4.06
4950 5691 8.728337 AAAATTCGTAAATTACTACTCCCTCC 57.272 34.615 1.42 0.00 33.93 4.30
4951 5692 7.427989 AATTCGTAAATTACTACTCCCTCCA 57.572 36.000 1.42 0.00 33.27 3.86
4952 5693 7.613551 ATTCGTAAATTACTACTCCCTCCAT 57.386 36.000 1.42 0.00 0.00 3.41
4953 5694 6.645790 TCGTAAATTACTACTCCCTCCATC 57.354 41.667 1.42 0.00 0.00 3.51
4954 5695 5.537674 TCGTAAATTACTACTCCCTCCATCC 59.462 44.000 1.42 0.00 0.00 3.51
4955 5696 5.279356 CGTAAATTACTACTCCCTCCATCCC 60.279 48.000 1.42 0.00 0.00 3.85
4956 5697 4.295905 AATTACTACTCCCTCCATCCCA 57.704 45.455 0.00 0.00 0.00 4.37
4957 5698 4.510303 ATTACTACTCCCTCCATCCCAT 57.490 45.455 0.00 0.00 0.00 4.00
4958 5699 5.633473 ATTACTACTCCCTCCATCCCATA 57.367 43.478 0.00 0.00 0.00 2.74
4959 5700 5.427857 TTACTACTCCCTCCATCCCATAA 57.572 43.478 0.00 0.00 0.00 1.90
4960 5701 4.510303 ACTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
4961 5702 4.171234 ACTACTCCCTCCATCCCATAATG 58.829 47.826 0.00 0.00 0.00 1.90
4962 5703 3.080660 ACTCCCTCCATCCCATAATGT 57.919 47.619 0.00 0.00 0.00 2.71
4963 5704 4.228237 ACTCCCTCCATCCCATAATGTA 57.772 45.455 0.00 0.00 0.00 2.29
4964 5705 4.577096 ACTCCCTCCATCCCATAATGTAA 58.423 43.478 0.00 0.00 0.00 2.41
4965 5706 4.599241 ACTCCCTCCATCCCATAATGTAAG 59.401 45.833 0.00 0.00 0.00 2.34
4966 5707 4.838403 TCCCTCCATCCCATAATGTAAGA 58.162 43.478 0.00 0.00 0.00 2.10
4967 5708 4.597507 TCCCTCCATCCCATAATGTAAGAC 59.402 45.833 0.00 0.00 0.00 3.01
4968 5709 4.563580 CCCTCCATCCCATAATGTAAGACG 60.564 50.000 0.00 0.00 0.00 4.18
4969 5710 4.040461 CCTCCATCCCATAATGTAAGACGT 59.960 45.833 0.00 0.00 0.00 4.34
4970 5711 5.454755 CCTCCATCCCATAATGTAAGACGTT 60.455 44.000 0.00 0.00 0.00 3.99
4971 5712 5.996644 TCCATCCCATAATGTAAGACGTTT 58.003 37.500 0.00 0.00 0.00 3.60
4972 5713 6.419791 TCCATCCCATAATGTAAGACGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
4973 5714 6.887545 TCCATCCCATAATGTAAGACGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
5020 5761 6.179906 ATGTCTTACATTATGGGACAGAGG 57.820 41.667 17.20 0.00 37.35 3.69
5021 5762 5.072329 ATGTCTTACATTATGGGACAGAGGG 59.928 44.000 17.20 0.00 37.35 4.30
5022 5763 7.099427 ATGTCTTACATTATGGGACAGAGGGA 61.099 42.308 17.20 1.33 37.35 4.20
5023 5764 8.839392 ATGTCTTACATTATGGGACAGAGGGAG 61.839 44.444 17.20 0.00 37.35 4.30
5030 5771 1.930204 TGGGACAGAGGGAGTATGAGA 59.070 52.381 0.00 0.00 0.00 3.27
5041 5782 6.031964 AGGGAGTATGAGATTGAGGAACTA 57.968 41.667 0.00 0.00 41.55 2.24
5047 5788 4.553330 TGAGATTGAGGAACTAACCACC 57.447 45.455 0.00 0.00 41.55 4.61
5056 5797 5.161943 AGGAACTAACCACCTGTAATCAC 57.838 43.478 0.00 0.00 36.02 3.06
5068 5809 4.600111 ACCTGTAATCACAAAAGGTAGGGA 59.400 41.667 0.00 0.00 30.95 4.20
5072 5813 7.027874 TGTAATCACAAAAGGTAGGGATCTT 57.972 36.000 0.00 0.00 0.00 2.40
5073 5814 7.466804 TGTAATCACAAAAGGTAGGGATCTTT 58.533 34.615 0.00 0.00 37.63 2.52
5089 5830 8.655935 AGGGATCTTTATTGATGTTTTCACTT 57.344 30.769 0.00 0.00 32.84 3.16
5090 5831 8.526147 AGGGATCTTTATTGATGTTTTCACTTG 58.474 33.333 0.00 0.00 32.84 3.16
5099 5840 8.945481 ATTGATGTTTTCACTTGTCAAAATGA 57.055 26.923 0.00 0.00 32.84 2.57
5100 5841 8.183830 TTGATGTTTTCACTTGTCAAAATGAC 57.816 30.769 3.58 3.58 39.93 3.06
5136 5879 1.232216 CTACCCCTCCCCTCGCTAA 59.768 63.158 0.00 0.00 0.00 3.09
5177 5920 2.038164 GGCACCATCTCTGATGATGCTA 59.962 50.000 21.66 0.00 41.65 3.49
5181 5924 4.038883 CACCATCTCTGATGATGCTACTCA 59.961 45.833 8.91 0.00 41.65 3.41
5183 5926 5.307456 ACCATCTCTGATGATGCTACTCATT 59.693 40.000 8.91 0.00 41.65 2.57
5187 5930 4.377897 TCTGATGATGCTACTCATTGCAG 58.622 43.478 0.00 0.00 42.74 4.41
5203 5946 2.980233 AGAGCCAAGCGCACAACC 60.980 61.111 11.47 0.00 41.38 3.77
5206 5949 4.389576 GCCAAGCGCACAACCTCG 62.390 66.667 11.47 0.00 37.47 4.63
5238 5981 1.450312 CCGCCCTGACATCCAAGAC 60.450 63.158 0.00 0.00 0.00 3.01
5239 5982 1.296392 CGCCCTGACATCCAAGACA 59.704 57.895 0.00 0.00 0.00 3.41
5299 6042 5.829924 AGAATCAAACACCAAGACAGACAAT 59.170 36.000 0.00 0.00 0.00 2.71
5311 6054 2.408050 ACAGACAATGTCAGAGCGAAC 58.592 47.619 16.38 0.00 37.75 3.95
5354 6097 2.587322 TTCCGATGCCGACCCACATC 62.587 60.000 0.00 0.00 39.44 3.06
5381 6124 2.543797 CCCACCTTAACCAGGGGCA 61.544 63.158 0.00 0.00 46.54 5.36
5385 6128 1.376812 CCTTAACCAGGGGCACGAC 60.377 63.158 0.00 0.00 39.39 4.34
5398 6141 1.471676 GGCACGACTCATTAGGGTCAG 60.472 57.143 0.00 0.00 33.19 3.51
5399 6142 1.927895 CACGACTCATTAGGGTCAGC 58.072 55.000 0.00 0.00 33.19 4.26
5410 6153 0.107508 AGGGTCAGCCAACATCATCG 60.108 55.000 0.00 0.00 36.17 3.84
5447 6190 4.742201 CGGGCCACCAGAGTCGTG 62.742 72.222 4.39 0.00 36.13 4.35
5454 6197 4.135153 CCAGAGTCGTGGCCTCCG 62.135 72.222 3.32 6.69 0.00 4.63
5455 6198 3.062466 CAGAGTCGTGGCCTCCGA 61.062 66.667 13.09 13.09 0.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.893808 CTCATTTCATCCCCGCGGG 60.894 63.158 37.99 37.99 46.11 6.13
22 23 2.546494 GCTCATTTCATCCCCGCGG 61.546 63.158 21.04 21.04 0.00 6.46
23 24 1.819208 TGCTCATTTCATCCCCGCG 60.819 57.895 0.00 0.00 0.00 6.46
24 25 1.728490 GGTGCTCATTTCATCCCCGC 61.728 60.000 0.00 0.00 0.00 6.13
25 26 0.107017 AGGTGCTCATTTCATCCCCG 60.107 55.000 0.00 0.00 0.00 5.73
26 27 1.396653 CAGGTGCTCATTTCATCCCC 58.603 55.000 0.00 0.00 0.00 4.81
27 28 0.743097 GCAGGTGCTCATTTCATCCC 59.257 55.000 0.00 0.00 38.21 3.85
28 29 0.379669 CGCAGGTGCTCATTTCATCC 59.620 55.000 0.00 0.00 39.32 3.51
29 30 0.248377 GCGCAGGTGCTCATTTCATC 60.248 55.000 0.30 0.00 39.32 2.92
30 31 0.961857 TGCGCAGGTGCTCATTTCAT 60.962 50.000 5.66 0.00 39.32 2.57
31 32 1.171549 TTGCGCAGGTGCTCATTTCA 61.172 50.000 11.31 0.00 35.54 2.69
32 33 0.455633 CTTGCGCAGGTGCTCATTTC 60.456 55.000 11.31 0.00 35.54 2.17
33 34 0.890542 TCTTGCGCAGGTGCTCATTT 60.891 50.000 19.74 0.00 35.54 2.32
34 35 1.302752 TCTTGCGCAGGTGCTCATT 60.303 52.632 19.74 0.00 35.54 2.57
35 36 1.744368 CTCTTGCGCAGGTGCTCAT 60.744 57.895 19.74 0.00 35.54 2.90
36 37 1.815817 TACTCTTGCGCAGGTGCTCA 61.816 55.000 19.74 3.43 39.32 4.26
37 38 0.460987 ATACTCTTGCGCAGGTGCTC 60.461 55.000 19.74 0.00 39.32 4.26
38 39 0.460987 GATACTCTTGCGCAGGTGCT 60.461 55.000 19.74 8.09 39.32 4.40
39 40 0.740868 TGATACTCTTGCGCAGGTGC 60.741 55.000 19.74 12.00 37.78 5.01
40 41 1.945387 ATGATACTCTTGCGCAGGTG 58.055 50.000 19.74 19.09 0.00 4.00
41 42 2.169352 AGAATGATACTCTTGCGCAGGT 59.831 45.455 19.74 16.94 0.00 4.00
42 43 2.831333 AGAATGATACTCTTGCGCAGG 58.169 47.619 14.22 14.22 0.00 4.85
43 44 5.693555 TGATAAGAATGATACTCTTGCGCAG 59.306 40.000 11.31 5.25 34.90 5.18
44 45 5.600696 TGATAAGAATGATACTCTTGCGCA 58.399 37.500 5.66 5.66 34.90 6.09
45 46 6.367149 TCATGATAAGAATGATACTCTTGCGC 59.633 38.462 0.00 0.00 34.90 6.09
46 47 7.880059 TCATGATAAGAATGATACTCTTGCG 57.120 36.000 0.00 0.00 34.90 4.85
47 48 9.049523 TGTTCATGATAAGAATGATACTCTTGC 57.950 33.333 0.00 0.00 34.14 4.01
52 53 8.820933 CGTGTTGTTCATGATAAGAATGATACT 58.179 33.333 0.00 0.00 34.14 2.12
53 54 8.064222 CCGTGTTGTTCATGATAAGAATGATAC 58.936 37.037 0.00 0.00 34.14 2.24
54 55 7.768582 ACCGTGTTGTTCATGATAAGAATGATA 59.231 33.333 0.00 0.00 34.14 2.15
55 56 6.599244 ACCGTGTTGTTCATGATAAGAATGAT 59.401 34.615 0.00 0.00 34.14 2.45
56 57 5.937540 ACCGTGTTGTTCATGATAAGAATGA 59.062 36.000 0.00 0.00 35.23 2.57
57 58 6.182039 ACCGTGTTGTTCATGATAAGAATG 57.818 37.500 0.00 0.00 35.23 2.67
58 59 6.876789 TGTACCGTGTTGTTCATGATAAGAAT 59.123 34.615 0.00 0.00 35.23 2.40
59 60 6.224584 TGTACCGTGTTGTTCATGATAAGAA 58.775 36.000 0.00 0.00 35.23 2.52
60 61 5.785243 TGTACCGTGTTGTTCATGATAAGA 58.215 37.500 0.00 0.00 35.23 2.10
61 62 6.474819 TTGTACCGTGTTGTTCATGATAAG 57.525 37.500 0.00 0.00 35.23 1.73
62 63 6.862711 TTTGTACCGTGTTGTTCATGATAA 57.137 33.333 0.00 0.00 35.23 1.75
63 64 6.862711 TTTTGTACCGTGTTGTTCATGATA 57.137 33.333 0.00 0.00 35.23 2.15
64 65 5.759506 TTTTGTACCGTGTTGTTCATGAT 57.240 34.783 0.00 0.00 35.23 2.45
65 66 5.759506 ATTTTGTACCGTGTTGTTCATGA 57.240 34.783 0.00 0.00 35.23 3.07
66 67 5.174761 CCAATTTTGTACCGTGTTGTTCATG 59.825 40.000 0.00 0.00 0.00 3.07
67 68 5.067936 TCCAATTTTGTACCGTGTTGTTCAT 59.932 36.000 0.00 0.00 0.00 2.57
68 69 4.398358 TCCAATTTTGTACCGTGTTGTTCA 59.602 37.500 0.00 0.00 0.00 3.18
69 70 4.922719 TCCAATTTTGTACCGTGTTGTTC 58.077 39.130 0.00 0.00 0.00 3.18
70 71 4.985538 TCCAATTTTGTACCGTGTTGTT 57.014 36.364 0.00 0.00 0.00 2.83
71 72 6.827586 ATATCCAATTTTGTACCGTGTTGT 57.172 33.333 0.00 0.00 0.00 3.32
72 73 7.087639 ACAATATCCAATTTTGTACCGTGTTG 58.912 34.615 0.00 0.00 33.61 3.33
73 74 7.222000 ACAATATCCAATTTTGTACCGTGTT 57.778 32.000 0.00 0.00 33.61 3.32
74 75 6.827586 ACAATATCCAATTTTGTACCGTGT 57.172 33.333 0.00 0.00 33.61 4.49
75 76 7.535139 AGAACAATATCCAATTTTGTACCGTG 58.465 34.615 0.00 0.00 34.14 4.94
76 77 7.413657 CGAGAACAATATCCAATTTTGTACCGT 60.414 37.037 0.00 0.00 34.14 4.83
77 78 6.905076 CGAGAACAATATCCAATTTTGTACCG 59.095 38.462 0.00 0.00 34.14 4.02
78 79 7.066525 TCCGAGAACAATATCCAATTTTGTACC 59.933 37.037 0.00 0.00 34.14 3.34
79 80 7.981142 TCCGAGAACAATATCCAATTTTGTAC 58.019 34.615 0.00 0.00 34.14 2.90
80 81 7.282224 CCTCCGAGAACAATATCCAATTTTGTA 59.718 37.037 0.00 0.00 34.14 2.41
81 82 6.095440 CCTCCGAGAACAATATCCAATTTTGT 59.905 38.462 0.00 0.00 36.26 2.83
82 83 6.095440 ACCTCCGAGAACAATATCCAATTTTG 59.905 38.462 0.00 0.00 0.00 2.44
83 84 6.187682 ACCTCCGAGAACAATATCCAATTTT 58.812 36.000 0.00 0.00 0.00 1.82
84 85 5.755849 ACCTCCGAGAACAATATCCAATTT 58.244 37.500 0.00 0.00 0.00 1.82
85 86 5.373812 ACCTCCGAGAACAATATCCAATT 57.626 39.130 0.00 0.00 0.00 2.32
86 87 5.126067 CAACCTCCGAGAACAATATCCAAT 58.874 41.667 0.00 0.00 0.00 3.16
87 88 4.513442 CAACCTCCGAGAACAATATCCAA 58.487 43.478 0.00 0.00 0.00 3.53
88 89 3.118408 CCAACCTCCGAGAACAATATCCA 60.118 47.826 0.00 0.00 0.00 3.41
89 90 3.467803 CCAACCTCCGAGAACAATATCC 58.532 50.000 0.00 0.00 0.00 2.59
90 91 2.872858 GCCAACCTCCGAGAACAATATC 59.127 50.000 0.00 0.00 0.00 1.63
91 92 2.238646 TGCCAACCTCCGAGAACAATAT 59.761 45.455 0.00 0.00 0.00 1.28
92 93 1.626321 TGCCAACCTCCGAGAACAATA 59.374 47.619 0.00 0.00 0.00 1.90
93 94 0.400213 TGCCAACCTCCGAGAACAAT 59.600 50.000 0.00 0.00 0.00 2.71
94 95 0.400213 ATGCCAACCTCCGAGAACAA 59.600 50.000 0.00 0.00 0.00 2.83
95 96 0.400213 AATGCCAACCTCCGAGAACA 59.600 50.000 0.00 0.00 0.00 3.18
96 97 0.804989 CAATGCCAACCTCCGAGAAC 59.195 55.000 0.00 0.00 0.00 3.01
97 98 0.322456 CCAATGCCAACCTCCGAGAA 60.322 55.000 0.00 0.00 0.00 2.87
98 99 1.299648 CCAATGCCAACCTCCGAGA 59.700 57.895 0.00 0.00 0.00 4.04
99 100 2.409870 GCCAATGCCAACCTCCGAG 61.410 63.158 0.00 0.00 0.00 4.63
100 101 1.558167 TAGCCAATGCCAACCTCCGA 61.558 55.000 0.00 0.00 38.69 4.55
101 102 1.077787 TAGCCAATGCCAACCTCCG 60.078 57.895 0.00 0.00 38.69 4.63
102 103 1.387295 GCTAGCCAATGCCAACCTCC 61.387 60.000 2.29 0.00 38.69 4.30
103 104 2.110296 GCTAGCCAATGCCAACCTC 58.890 57.895 2.29 0.00 38.69 3.85
104 105 4.344237 GCTAGCCAATGCCAACCT 57.656 55.556 2.29 0.00 38.69 3.50
109 110 0.466922 ACATCTGGCTAGCCAATGCC 60.467 55.000 34.63 16.71 46.63 4.40
110 111 0.950116 GACATCTGGCTAGCCAATGC 59.050 55.000 34.63 27.92 46.63 3.56
111 112 1.142465 AGGACATCTGGCTAGCCAATG 59.858 52.381 33.86 33.86 46.63 2.82
112 113 1.419387 GAGGACATCTGGCTAGCCAAT 59.581 52.381 35.07 26.25 46.63 3.16
113 114 0.833287 GAGGACATCTGGCTAGCCAA 59.167 55.000 35.07 25.32 46.63 4.52
114 115 1.050988 GGAGGACATCTGGCTAGCCA 61.051 60.000 33.82 33.82 45.02 4.75
115 116 1.751563 GGAGGACATCTGGCTAGCC 59.248 63.158 27.71 27.71 0.00 3.93
116 117 1.050988 TGGGAGGACATCTGGCTAGC 61.051 60.000 6.04 6.04 0.00 3.42
117 118 1.047002 CTGGGAGGACATCTGGCTAG 58.953 60.000 0.00 0.00 0.00 3.42
118 119 0.636647 TCTGGGAGGACATCTGGCTA 59.363 55.000 0.00 0.00 0.00 3.93
119 120 0.252881 TTCTGGGAGGACATCTGGCT 60.253 55.000 0.00 0.00 0.00 4.75
120 121 0.620556 TTTCTGGGAGGACATCTGGC 59.379 55.000 0.00 0.00 0.00 4.85
121 122 2.507058 TCATTTCTGGGAGGACATCTGG 59.493 50.000 0.00 0.00 0.00 3.86
122 123 3.920231 TCATTTCTGGGAGGACATCTG 57.080 47.619 0.00 0.00 0.00 2.90
123 124 4.725810 AGATTCATTTCTGGGAGGACATCT 59.274 41.667 0.00 0.00 0.00 2.90
124 125 5.046288 AGATTCATTTCTGGGAGGACATC 57.954 43.478 0.00 0.00 0.00 3.06
125 126 4.141298 GGAGATTCATTTCTGGGAGGACAT 60.141 45.833 0.00 0.00 0.00 3.06
126 127 3.200825 GGAGATTCATTTCTGGGAGGACA 59.799 47.826 0.00 0.00 0.00 4.02
127 128 3.742640 CGGAGATTCATTTCTGGGAGGAC 60.743 52.174 0.00 0.00 0.00 3.85
128 129 2.435805 CGGAGATTCATTTCTGGGAGGA 59.564 50.000 0.00 0.00 0.00 3.71
129 130 2.435805 TCGGAGATTCATTTCTGGGAGG 59.564 50.000 0.00 0.00 0.00 4.30
130 131 3.462021 GTCGGAGATTCATTTCTGGGAG 58.538 50.000 0.00 0.00 40.67 4.30
131 132 2.170607 GGTCGGAGATTCATTTCTGGGA 59.829 50.000 0.00 0.00 40.67 4.37
132 133 2.565841 GGTCGGAGATTCATTTCTGGG 58.434 52.381 0.00 0.00 40.67 4.45
133 134 2.565841 GGGTCGGAGATTCATTTCTGG 58.434 52.381 0.00 0.00 40.67 3.86
134 135 2.205074 CGGGTCGGAGATTCATTTCTG 58.795 52.381 0.00 0.00 40.67 3.02
135 136 1.831736 ACGGGTCGGAGATTCATTTCT 59.168 47.619 0.00 0.00 40.67 2.52
136 137 2.202566 GACGGGTCGGAGATTCATTTC 58.797 52.381 0.00 0.00 40.67 2.17
137 138 1.553248 TGACGGGTCGGAGATTCATTT 59.447 47.619 0.00 0.00 40.67 2.32
138 139 1.191535 TGACGGGTCGGAGATTCATT 58.808 50.000 0.00 0.00 40.67 2.57
139 140 1.414158 ATGACGGGTCGGAGATTCAT 58.586 50.000 0.00 0.00 40.67 2.57
140 141 1.191535 AATGACGGGTCGGAGATTCA 58.808 50.000 0.00 0.00 40.67 2.57
141 142 2.311124 AAATGACGGGTCGGAGATTC 57.689 50.000 0.00 0.00 40.67 2.52
142 143 2.781681 AAAATGACGGGTCGGAGATT 57.218 45.000 0.00 0.00 40.67 2.40
147 148 0.390209 ACGGTAAAATGACGGGTCGG 60.390 55.000 0.00 0.00 0.00 4.79
166 167 1.686355 TCCTTTCCGCTTTGCTTCAA 58.314 45.000 0.00 0.00 0.00 2.69
199 200 3.132925 CAAATCCTGTTGCACTTTTGGG 58.867 45.455 0.00 0.00 0.00 4.12
200 201 3.795877 ACAAATCCTGTTGCACTTTTGG 58.204 40.909 0.00 0.00 32.99 3.28
201 202 4.431809 TGACAAATCCTGTTGCACTTTTG 58.568 39.130 0.00 0.00 38.84 2.44
202 203 4.734398 TGACAAATCCTGTTGCACTTTT 57.266 36.364 0.00 0.00 38.84 2.27
203 204 4.734398 TTGACAAATCCTGTTGCACTTT 57.266 36.364 0.00 0.00 38.84 2.66
204 205 4.432712 GTTTGACAAATCCTGTTGCACTT 58.567 39.130 3.49 0.00 38.84 3.16
205 206 3.489059 CGTTTGACAAATCCTGTTGCACT 60.489 43.478 3.49 0.00 38.84 4.40
206 207 2.788786 CGTTTGACAAATCCTGTTGCAC 59.211 45.455 3.49 0.00 38.84 4.57
207 208 2.685388 TCGTTTGACAAATCCTGTTGCA 59.315 40.909 3.49 0.00 38.84 4.08
208 209 3.042887 GTCGTTTGACAAATCCTGTTGC 58.957 45.455 3.49 0.00 44.82 4.17
290 328 0.253044 ATGCCTCTTACGCACATGGT 59.747 50.000 0.00 0.00 39.49 3.55
342 391 8.739039 CCTTGACATTCATGACCTACAAATTTA 58.261 33.333 0.00 0.00 0.00 1.40
346 395 5.630121 ACCTTGACATTCATGACCTACAAA 58.370 37.500 0.00 0.00 0.00 2.83
347 396 5.221823 TGACCTTGACATTCATGACCTACAA 60.222 40.000 0.00 0.00 0.00 2.41
503 552 4.142337 TGGAACCCTTCGTTTTCTTTTCAC 60.142 41.667 0.00 0.00 33.74 3.18
673 728 1.873591 GTGCCCTGATTATTGTAGCGG 59.126 52.381 0.00 0.00 0.00 5.52
825 894 3.967024 TGGTGGGGGTGGAGGGAT 61.967 66.667 0.00 0.00 0.00 3.85
865 940 1.536331 GGAGTAGAATAGAGCCGGACG 59.464 57.143 5.05 0.00 0.00 4.79
939 1017 3.148084 GCTAGAGCCCCGGCATTA 58.852 61.111 8.74 0.00 44.88 1.90
1263 1344 2.736719 CGAGACTCCGACGAGGTAGTAA 60.737 54.545 0.00 0.00 40.77 2.24
1278 1359 2.617538 TCCTCCTCCCCCGAGACT 60.618 66.667 0.00 0.00 38.52 3.24
1566 1647 0.593128 ACAAGCAAAGGCACGCTTAG 59.407 50.000 7.58 5.88 46.47 2.18
1609 1690 1.142870 AGCAGACCCAAGCTACAACAA 59.857 47.619 0.00 0.00 39.78 2.83
1613 1694 2.466846 TGATAGCAGACCCAAGCTACA 58.533 47.619 0.00 0.00 45.18 2.74
1614 1695 3.543680 TTGATAGCAGACCCAAGCTAC 57.456 47.619 0.00 0.00 45.18 3.58
1615 1696 4.019321 AGTTTTGATAGCAGACCCAAGCTA 60.019 41.667 0.00 0.00 46.28 3.32
1616 1697 3.084786 GTTTTGATAGCAGACCCAAGCT 58.915 45.455 0.00 0.00 44.55 3.74
1617 1698 3.084786 AGTTTTGATAGCAGACCCAAGC 58.915 45.455 0.00 0.00 0.00 4.01
1618 1699 5.245531 TGTAGTTTTGATAGCAGACCCAAG 58.754 41.667 0.00 0.00 0.00 3.61
1619 1700 5.012664 TCTGTAGTTTTGATAGCAGACCCAA 59.987 40.000 0.00 0.00 0.00 4.12
1620 1701 4.530553 TCTGTAGTTTTGATAGCAGACCCA 59.469 41.667 0.00 0.00 0.00 4.51
1621 1702 5.086104 TCTGTAGTTTTGATAGCAGACCC 57.914 43.478 0.00 0.00 0.00 4.46
1622 1703 6.595716 ACAATCTGTAGTTTTGATAGCAGACC 59.404 38.462 0.00 0.00 36.07 3.85
1623 1704 7.459486 CACAATCTGTAGTTTTGATAGCAGAC 58.541 38.462 0.00 0.00 36.07 3.51
1624 1705 6.092670 GCACAATCTGTAGTTTTGATAGCAGA 59.907 38.462 0.00 0.00 37.38 4.26
1625 1706 6.253746 GCACAATCTGTAGTTTTGATAGCAG 58.746 40.000 0.00 0.00 0.00 4.24
1626 1707 5.163864 CGCACAATCTGTAGTTTTGATAGCA 60.164 40.000 0.00 0.00 0.00 3.49
1631 1712 2.225491 GGCGCACAATCTGTAGTTTTGA 59.775 45.455 10.83 0.00 0.00 2.69
1677 1758 5.588958 AATCCAAAGCTCCTAAATGAAGC 57.411 39.130 0.00 0.00 0.00 3.86
1745 1826 7.733402 ATCAGACGGTAGAGAACTAGATAAC 57.267 40.000 0.00 0.00 0.00 1.89
1746 1827 9.656040 GATATCAGACGGTAGAGAACTAGATAA 57.344 37.037 0.00 0.00 0.00 1.75
1774 1855 2.027192 GGCATCTACCACTTGGAGAACA 60.027 50.000 1.14 0.00 38.94 3.18
1791 1872 1.424302 AGAGCAGCATCATAAGGGCAT 59.576 47.619 0.00 0.00 0.00 4.40
1910 1991 9.738832 GTATCTAAACTCAGTCTGAACTTATCC 57.261 37.037 3.67 0.00 31.71 2.59
2001 2090 0.242825 TCGTTGCAGAGTTACGGAGG 59.757 55.000 7.93 0.00 36.06 4.30
2031 2120 3.253188 GCAACAGCTGAAATACTTGGTGA 59.747 43.478 23.35 0.00 0.00 4.02
2076 2661 3.581024 ACACCAATGCTGCAGTATTTG 57.419 42.857 25.19 23.35 0.00 2.32
2241 2830 8.854979 TTTACACAAAATGATGAAGTTCACTG 57.145 30.769 7.96 2.09 0.00 3.66
2277 2876 9.684448 CTCGAGTTGATGTAACATCAGTAATAT 57.316 33.333 3.62 0.00 41.88 1.28
2278 2877 8.683615 ACTCGAGTTGATGTAACATCAGTAATA 58.316 33.333 13.58 0.00 41.88 0.98
2279 2878 7.489435 CACTCGAGTTGATGTAACATCAGTAAT 59.511 37.037 17.26 0.00 41.88 1.89
2280 2879 6.806739 CACTCGAGTTGATGTAACATCAGTAA 59.193 38.462 17.26 0.00 41.88 2.24
2281 2880 6.322491 CACTCGAGTTGATGTAACATCAGTA 58.678 40.000 17.26 0.00 41.88 2.74
2282 2881 5.164233 CACTCGAGTTGATGTAACATCAGT 58.836 41.667 17.26 0.00 41.88 3.41
2283 2882 4.564372 CCACTCGAGTTGATGTAACATCAG 59.436 45.833 17.26 0.00 41.88 2.90
2284 2883 4.021456 ACCACTCGAGTTGATGTAACATCA 60.021 41.667 22.33 0.00 41.88 3.07
2285 2884 4.327357 CACCACTCGAGTTGATGTAACATC 59.673 45.833 22.33 0.00 41.88 3.06
2286 2885 4.245660 CACCACTCGAGTTGATGTAACAT 58.754 43.478 22.33 0.00 41.88 2.71
2386 2986 1.888512 GAAGTGCAAATGAGGCCAGAA 59.111 47.619 5.01 0.00 0.00 3.02
2431 3031 2.818432 ACCTTCCTAGTGTACGACTGTG 59.182 50.000 7.85 2.56 35.96 3.66
2464 3064 3.194062 GCTGCATCTACTTCCTGTCTTC 58.806 50.000 0.00 0.00 0.00 2.87
2555 3165 6.627087 AATTCAAACTCTGAGACCTATCCA 57.373 37.500 12.44 0.00 34.81 3.41
2610 3220 4.219919 GCCAGTCCTTTCTATAGGAGACT 58.780 47.826 0.00 0.00 44.81 3.24
2621 3231 0.246635 TAGCAGTCGCCAGTCCTTTC 59.753 55.000 0.00 0.00 39.83 2.62
2692 3302 4.004982 CGGAGGGAGTAGAAGATAGCTAC 58.995 52.174 0.00 0.00 38.76 3.58
2749 3359 8.288208 ACTAAAACGTGTCTATATACATCCGAG 58.712 37.037 7.85 0.04 0.00 4.63
3108 3718 2.703007 AGATATGAAGGAGGTCTGCCAC 59.297 50.000 0.00 0.00 37.19 5.01
3111 3721 4.343526 TGAGAAGATATGAAGGAGGTCTGC 59.656 45.833 0.00 0.00 0.00 4.26
3241 3851 3.369756 CACATGCAACCAAAGAATCATGC 59.630 43.478 0.00 0.00 35.89 4.06
3279 3889 4.325119 CTGGATCCATGATGATTGGTCTC 58.675 47.826 16.63 0.00 35.64 3.36
3310 3920 5.310720 ACAACCTCAGTTTTGTTTGAGAC 57.689 39.130 3.22 0.00 42.67 3.36
3333 3943 5.659440 TGCTTCTTTTCTCCTTTGTTGTT 57.341 34.783 0.00 0.00 0.00 2.83
3447 4057 1.135286 GGTGATAGGCAACAGCAAAGC 60.135 52.381 0.00 0.00 41.41 3.51
3548 4162 9.589461 ACTATAGTAATGCCATAGTTCTACAGT 57.411 33.333 2.75 0.00 32.81 3.55
3613 4227 5.931146 TCAATGCAAACAAGACACAAAACTT 59.069 32.000 0.00 0.00 0.00 2.66
3614 4228 5.477510 TCAATGCAAACAAGACACAAAACT 58.522 33.333 0.00 0.00 0.00 2.66
3615 4229 5.776519 TCAATGCAAACAAGACACAAAAC 57.223 34.783 0.00 0.00 0.00 2.43
3659 4273 0.035915 GTGTCCCTTCTCTGGGCTTC 60.036 60.000 0.00 0.00 46.67 3.86
3675 4289 1.841277 TGTTGTAACTCCTGGGTGTGT 59.159 47.619 0.00 0.00 0.00 3.72
3683 4297 2.422377 GGGGTGTTGTGTTGTAACTCCT 60.422 50.000 0.00 0.00 40.04 3.69
3713 4327 3.594603 GTGGTTCTAGCAGCACTTCTA 57.405 47.619 16.06 0.00 41.18 2.10
3729 4343 2.116125 GAAAGCAGGGGCAGTGGT 59.884 61.111 0.00 0.00 44.61 4.16
3757 4371 0.753262 CACTATTAGGTCTGCGGCCT 59.247 55.000 12.34 12.34 40.00 5.19
3762 4376 3.861840 TGCTTGACACTATTAGGTCTGC 58.138 45.455 11.27 13.46 35.98 4.26
3766 4380 2.840651 AGCCTGCTTGACACTATTAGGT 59.159 45.455 0.00 0.00 0.00 3.08
3788 4402 3.818787 CCGCAGCCTCACATTGCC 61.819 66.667 0.00 0.00 34.42 4.52
3871 4502 0.399833 TGGCAGTCAACATAGGCACA 59.600 50.000 0.00 0.00 0.00 4.57
4129 4760 4.556233 CCATGAAACGGAGATCGCTATTA 58.444 43.478 0.00 0.00 43.89 0.98
4132 4763 1.538204 GCCATGAAACGGAGATCGCTA 60.538 52.381 0.00 0.00 43.89 4.26
4134 4765 1.643832 GCCATGAAACGGAGATCGC 59.356 57.895 0.00 0.00 43.89 4.58
4135 4766 0.806102 ACGCCATGAAACGGAGATCG 60.806 55.000 0.00 0.00 45.88 3.69
4170 4801 1.534235 AGGTTGAGAGGGTGCGTCT 60.534 57.895 0.00 0.00 0.00 4.18
4552 5187 3.068590 CAGCAATGAGAACAAACCACCTT 59.931 43.478 0.00 0.00 0.00 3.50
4752 5453 4.912586 AGAAAAGAAACCCTAGAGAAGCC 58.087 43.478 0.00 0.00 0.00 4.35
4781 5489 7.486870 AGTTGAAACAACATTTTCGGAGTTTAC 59.513 33.333 15.29 0.00 38.17 2.01
4789 5497 9.726034 GCATTTATAGTTGAAACAACATTTTCG 57.274 29.630 15.29 2.01 38.17 3.46
4826 5539 4.630430 ACATCTTATGGGACGGAGTGAGTA 60.630 45.833 0.00 0.00 35.70 2.59
4827 5540 3.882114 ACATCTTATGGGACGGAGTGAGT 60.882 47.826 0.00 0.00 35.70 3.41
4828 5541 2.695666 ACATCTTATGGGACGGAGTGAG 59.304 50.000 0.00 0.00 35.70 3.51
4829 5542 2.747177 ACATCTTATGGGACGGAGTGA 58.253 47.619 0.00 0.00 35.70 3.41
4831 5544 5.888982 AATAACATCTTATGGGACGGAGT 57.111 39.130 0.00 0.00 38.03 3.85
4832 5545 6.755206 TGTAATAACATCTTATGGGACGGAG 58.245 40.000 0.00 0.00 33.60 4.63
4833 5546 6.734502 TGTAATAACATCTTATGGGACGGA 57.265 37.500 0.00 0.00 33.60 4.69
4834 5547 7.979444 ATTGTAATAACATCTTATGGGACGG 57.021 36.000 0.00 0.00 34.97 4.79
4835 5548 9.051679 TCAATTGTAATAACATCTTATGGGACG 57.948 33.333 5.13 0.00 34.97 4.79
4858 5571 8.210265 TGTCAAGCCAATATATGAGTACATCAA 58.790 33.333 0.00 0.00 42.53 2.57
4871 5584 5.509498 ACAACCATACTGTCAAGCCAATAT 58.491 37.500 0.00 0.00 0.00 1.28
4906 5646 3.953712 TTAGTGGATTCAAGACTCGCA 57.046 42.857 0.00 0.00 0.00 5.10
4907 5647 5.803020 ATTTTAGTGGATTCAAGACTCGC 57.197 39.130 0.00 0.00 0.00 5.03
4908 5648 6.090898 ACGAATTTTAGTGGATTCAAGACTCG 59.909 38.462 0.00 0.00 33.00 4.18
4943 5684 4.846367 TCTTACATTATGGGATGGAGGGAG 59.154 45.833 0.00 0.00 0.00 4.30
4944 5685 4.597507 GTCTTACATTATGGGATGGAGGGA 59.402 45.833 0.00 0.00 0.00 4.20
4945 5686 4.563580 CGTCTTACATTATGGGATGGAGGG 60.564 50.000 0.00 0.00 0.00 4.30
4946 5687 4.040461 ACGTCTTACATTATGGGATGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
4947 5688 5.215252 ACGTCTTACATTATGGGATGGAG 57.785 43.478 0.00 0.00 0.00 3.86
4948 5689 5.623956 AACGTCTTACATTATGGGATGGA 57.376 39.130 0.00 0.00 0.00 3.41
4949 5690 6.693315 AAAACGTCTTACATTATGGGATGG 57.307 37.500 0.00 0.00 0.00 3.51
4993 5734 8.877864 TCTGTCCCATAATGTAAGACATTTTT 57.122 30.769 9.92 0.00 45.80 1.94
4994 5735 7.557719 CCTCTGTCCCATAATGTAAGACATTTT 59.442 37.037 9.92 0.33 45.80 1.82
4995 5736 7.056635 CCTCTGTCCCATAATGTAAGACATTT 58.943 38.462 9.92 0.00 45.80 2.32
4997 5738 5.072329 CCCTCTGTCCCATAATGTAAGACAT 59.928 44.000 0.00 0.00 41.31 3.06
4998 5739 4.408921 CCCTCTGTCCCATAATGTAAGACA 59.591 45.833 0.00 0.00 36.16 3.41
4999 5740 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
5000 5741 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
5001 5742 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
5002 5743 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
5003 5744 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
5004 5745 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
5005 5746 4.840680 TCATACTCCCTCTGTCCCATAATG 59.159 45.833 0.00 0.00 0.00 1.90
5006 5747 5.090139 CTCATACTCCCTCTGTCCCATAAT 58.910 45.833 0.00 0.00 0.00 1.28
5007 5748 4.170053 TCTCATACTCCCTCTGTCCCATAA 59.830 45.833 0.00 0.00 0.00 1.90
5008 5749 3.727391 TCTCATACTCCCTCTGTCCCATA 59.273 47.826 0.00 0.00 0.00 2.74
5009 5750 2.520120 TCTCATACTCCCTCTGTCCCAT 59.480 50.000 0.00 0.00 0.00 4.00
5010 5751 1.930204 TCTCATACTCCCTCTGTCCCA 59.070 52.381 0.00 0.00 0.00 4.37
5011 5752 2.757894 TCTCATACTCCCTCTGTCCC 57.242 55.000 0.00 0.00 0.00 4.46
5012 5753 4.219115 TCAATCTCATACTCCCTCTGTCC 58.781 47.826 0.00 0.00 0.00 4.02
5013 5754 4.280677 CCTCAATCTCATACTCCCTCTGTC 59.719 50.000 0.00 0.00 0.00 3.51
5014 5755 4.078922 TCCTCAATCTCATACTCCCTCTGT 60.079 45.833 0.00 0.00 0.00 3.41
5015 5756 4.478203 TCCTCAATCTCATACTCCCTCTG 58.522 47.826 0.00 0.00 0.00 3.35
5016 5757 4.823364 TCCTCAATCTCATACTCCCTCT 57.177 45.455 0.00 0.00 0.00 3.69
5017 5758 4.898861 AGTTCCTCAATCTCATACTCCCTC 59.101 45.833 0.00 0.00 0.00 4.30
5018 5759 4.889780 AGTTCCTCAATCTCATACTCCCT 58.110 43.478 0.00 0.00 0.00 4.20
5019 5760 6.463190 GGTTAGTTCCTCAATCTCATACTCCC 60.463 46.154 0.00 0.00 0.00 4.30
5020 5761 6.098409 TGGTTAGTTCCTCAATCTCATACTCC 59.902 42.308 0.00 0.00 0.00 3.85
5021 5762 6.981559 GTGGTTAGTTCCTCAATCTCATACTC 59.018 42.308 0.00 0.00 0.00 2.59
5022 5763 6.127026 GGTGGTTAGTTCCTCAATCTCATACT 60.127 42.308 0.00 0.00 0.00 2.12
5023 5764 6.049790 GGTGGTTAGTTCCTCAATCTCATAC 58.950 44.000 0.00 0.00 0.00 2.39
5024 5765 5.964477 AGGTGGTTAGTTCCTCAATCTCATA 59.036 40.000 0.00 0.00 0.00 2.15
5025 5766 4.785376 AGGTGGTTAGTTCCTCAATCTCAT 59.215 41.667 0.00 0.00 0.00 2.90
5030 5771 5.836024 TTACAGGTGGTTAGTTCCTCAAT 57.164 39.130 0.00 0.00 0.00 2.57
5041 5782 4.542697 ACCTTTTGTGATTACAGGTGGTT 58.457 39.130 0.00 0.00 38.23 3.67
5047 5788 6.653989 AGATCCCTACCTTTTGTGATTACAG 58.346 40.000 0.00 0.00 38.23 2.74
5056 5797 8.525290 ACATCAATAAAGATCCCTACCTTTTG 57.475 34.615 0.00 0.00 34.74 2.44
5090 5831 3.247006 TCCTAGCCTCGTCATTTTGAC 57.753 47.619 0.00 0.00 43.65 3.18
5094 5835 2.766263 TGTGATCCTAGCCTCGTCATTT 59.234 45.455 0.00 0.00 0.00 2.32
5096 5837 2.073252 TGTGATCCTAGCCTCGTCAT 57.927 50.000 0.00 0.00 0.00 3.06
5097 5838 1.683385 CATGTGATCCTAGCCTCGTCA 59.317 52.381 0.00 0.00 0.00 4.35
5098 5839 1.604185 GCATGTGATCCTAGCCTCGTC 60.604 57.143 0.00 0.00 0.00 4.20
5099 5840 0.390860 GCATGTGATCCTAGCCTCGT 59.609 55.000 0.00 0.00 0.00 4.18
5100 5841 0.678395 AGCATGTGATCCTAGCCTCG 59.322 55.000 0.00 0.00 0.00 4.63
5106 5849 2.609747 GAGGGGTAGCATGTGATCCTA 58.390 52.381 0.00 0.00 0.00 2.94
5107 5850 1.428869 GAGGGGTAGCATGTGATCCT 58.571 55.000 0.00 0.00 0.00 3.24
5136 5879 0.456221 CATTCTCTCGGCTACGTGGT 59.544 55.000 0.00 0.00 41.85 4.16
5160 5903 4.868314 TGAGTAGCATCATCAGAGATGG 57.132 45.455 7.11 0.00 44.33 3.51
5162 5905 5.221661 TGCAATGAGTAGCATCATCAGAGAT 60.222 40.000 0.28 0.00 39.00 2.75
5163 5906 4.100498 TGCAATGAGTAGCATCATCAGAGA 59.900 41.667 0.28 0.00 39.00 3.10
5164 5907 4.377897 TGCAATGAGTAGCATCATCAGAG 58.622 43.478 0.28 0.00 39.00 3.35
5165 5908 4.100498 TCTGCAATGAGTAGCATCATCAGA 59.900 41.667 11.00 11.00 39.00 3.27
5166 5909 4.377897 TCTGCAATGAGTAGCATCATCAG 58.622 43.478 0.00 4.88 39.00 2.90
5167 5910 4.377897 CTCTGCAATGAGTAGCATCATCA 58.622 43.478 0.00 0.00 39.00 3.07
5168 5911 3.186817 GCTCTGCAATGAGTAGCATCATC 59.813 47.826 5.02 0.00 39.00 2.92
5169 5912 3.139850 GCTCTGCAATGAGTAGCATCAT 58.860 45.455 5.02 0.00 41.72 2.45
5170 5913 2.558378 GCTCTGCAATGAGTAGCATCA 58.442 47.619 5.02 0.00 40.42 3.07
5171 5914 1.872313 GGCTCTGCAATGAGTAGCATC 59.128 52.381 5.02 0.00 40.42 3.91
5172 5915 1.211212 TGGCTCTGCAATGAGTAGCAT 59.789 47.619 5.02 0.00 40.42 3.79
5173 5916 0.614812 TGGCTCTGCAATGAGTAGCA 59.385 50.000 5.02 0.00 39.25 3.49
5177 5920 1.303799 CGCTTGGCTCTGCAATGAGT 61.304 55.000 5.02 0.00 36.51 3.41
5181 5924 2.674033 TGCGCTTGGCTCTGCAAT 60.674 55.556 9.73 0.00 44.05 3.56
5183 5926 4.933563 TGTGCGCTTGGCTCTGCA 62.934 61.111 9.73 0.00 44.05 4.41
5187 5930 2.970974 GAGGTTGTGCGCTTGGCTC 61.971 63.158 9.73 0.00 44.05 4.70
5203 5946 3.357079 GCAACACTGGGTGGCGAG 61.357 66.667 0.00 0.00 36.53 5.03
5354 6097 1.928567 TTAAGGTGGGGCTCCCTGG 60.929 63.158 0.00 0.00 45.70 4.45
5370 6113 0.907704 ATGAGTCGTGCCCCTGGTTA 60.908 55.000 0.00 0.00 0.00 2.85
5381 6124 0.824759 GGCTGACCCTAATGAGTCGT 59.175 55.000 0.00 0.00 35.71 4.34
5385 6128 2.787473 TGTTGGCTGACCCTAATGAG 57.213 50.000 0.00 0.00 33.59 2.90
5398 6141 2.484062 CCCCAGCGATGATGTTGGC 61.484 63.158 0.06 0.00 38.76 4.52
5399 6142 2.484062 GCCCCAGCGATGATGTTGG 61.484 63.158 0.06 0.00 39.69 3.77
5447 6190 2.503382 GGATCTGTCCTCGGAGGCC 61.503 68.421 19.48 8.88 41.60 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.