Multiple sequence alignment - TraesCS4B01G205600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G205600 chr4B 100.000 2708 0 0 1 2708 437835673 437838380 0.000000e+00 5001.0
1 TraesCS4B01G205600 chr4B 79.851 402 57 13 1978 2357 43183171 43182772 3.440000e-69 272.0
2 TraesCS4B01G205600 chr4B 79.950 404 54 15 1978 2357 506904311 506904711 3.440000e-69 272.0
3 TraesCS4B01G205600 chr4D 94.099 1864 69 18 20 1865 354050250 354052090 0.000000e+00 2795.0
4 TraesCS4B01G205600 chr4D 89.337 347 27 3 2368 2708 486939957 486939615 6.930000e-116 427.0
5 TraesCS4B01G205600 chr4D 88.385 353 29 5 2363 2708 312942454 312942801 5.390000e-112 414.0
6 TraesCS4B01G205600 chr4D 87.395 357 31 7 2360 2708 365414470 365414820 5.430000e-107 398.0
7 TraesCS4B01G205600 chr4D 82.134 403 45 10 1978 2357 486940213 486939815 1.210000e-83 320.0
8 TraesCS4B01G205600 chr4D 80.798 401 53 9 1978 2357 312942203 312942600 2.640000e-75 292.0
9 TraesCS4B01G205600 chr4D 78.328 323 35 20 2062 2357 365414306 365414620 2.770000e-40 176.0
10 TraesCS4B01G205600 chr4A 93.392 1589 70 8 305 1865 110877303 110875722 0.000000e+00 2320.0
11 TraesCS4B01G205600 chr4A 88.779 303 20 8 18 311 110878621 110878324 2.560000e-95 359.0
12 TraesCS4B01G205600 chr2D 89.205 352 27 4 2363 2708 58508492 58508146 1.930000e-116 429.0
13 TraesCS4B01G205600 chr2D 87.324 355 31 6 2363 2708 539869257 539869606 7.030000e-106 394.0
14 TraesCS4B01G205600 chr2D 82.071 396 46 11 1984 2357 58508738 58508346 5.630000e-82 315.0
15 TraesCS4B01G205600 chr2D 78.218 404 61 12 1978 2357 472501483 472501883 1.620000e-57 233.0
16 TraesCS4B01G205600 chr2D 83.019 212 32 4 1978 2187 428581677 428581886 3.560000e-44 189.0
17 TraesCS4B01G205600 chr3D 86.188 362 33 10 2356 2708 597174981 597174628 2.550000e-100 375.0
18 TraesCS4B01G205600 chr3D 86.275 357 34 9 2360 2708 401168494 401168843 9.160000e-100 374.0
19 TraesCS4B01G205600 chr3D 87.622 307 29 3 2368 2669 593758051 593757749 5.550000e-92 348.0
20 TraesCS4B01G205600 chr3D 80.741 405 49 15 1978 2357 593758309 593757909 3.410000e-74 289.0
21 TraesCS4B01G205600 chr5D 86.901 313 31 3 2363 2669 349374112 349373804 2.580000e-90 342.0
22 TraesCS4B01G205600 chr5D 80.893 403 51 15 1978 2357 349374364 349373965 7.330000e-76 294.0
23 TraesCS4B01G205600 chr7A 87.625 299 25 7 2417 2708 11913120 11912827 1.200000e-88 337.0
24 TraesCS4B01G205600 chr7A 87.291 299 26 7 2417 2708 11966635 11966342 5.590000e-87 331.0
25 TraesCS4B01G205600 chr2A 87.013 308 28 7 2408 2708 584048864 584049166 1.200000e-88 337.0
26 TraesCS4B01G205600 chr2A 87.625 299 25 6 2417 2708 653376500 653376207 1.200000e-88 337.0
27 TraesCS4B01G205600 chr5A 87.291 299 26 7 2417 2708 449014409 449014116 5.590000e-87 331.0
28 TraesCS4B01G205600 chr5A 94.231 52 3 0 2136 2187 378702601 378702550 2.240000e-11 80.5
29 TraesCS4B01G205600 chr3A 86.688 308 29 7 2408 2708 70704066 70704368 5.590000e-87 331.0
30 TraesCS4B01G205600 chr3B 80.397 403 53 15 1978 2357 34156947 34157346 1.590000e-72 283.0
31 TraesCS4B01G205600 chr3B 80.397 403 53 15 1978 2357 34212803 34213202 1.590000e-72 283.0
32 TraesCS4B01G205600 chr7D 79.064 406 56 15 1978 2357 566099392 566099794 4.480000e-63 252.0
33 TraesCS4B01G205600 chr1D 75.882 170 35 6 2027 2193 403488761 403488595 6.210000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G205600 chr4B 437835673 437838380 2707 False 5001.0 5001 100.0000 1 2708 1 chr4B.!!$F1 2707
1 TraesCS4B01G205600 chr4D 354050250 354052090 1840 False 2795.0 2795 94.0990 20 1865 1 chr4D.!!$F1 1845
2 TraesCS4B01G205600 chr4D 486939615 486940213 598 True 373.5 427 85.7355 1978 2708 2 chr4D.!!$R1 730
3 TraesCS4B01G205600 chr4D 312942203 312942801 598 False 353.0 414 84.5915 1978 2708 2 chr4D.!!$F2 730
4 TraesCS4B01G205600 chr4D 365414306 365414820 514 False 287.0 398 82.8615 2062 2708 2 chr4D.!!$F3 646
5 TraesCS4B01G205600 chr4A 110875722 110878621 2899 True 1339.5 2320 91.0855 18 1865 2 chr4A.!!$R1 1847
6 TraesCS4B01G205600 chr2D 58508146 58508738 592 True 372.0 429 85.6380 1984 2708 2 chr2D.!!$R1 724
7 TraesCS4B01G205600 chr3D 593757749 593758309 560 True 318.5 348 84.1815 1978 2669 2 chr3D.!!$R2 691
8 TraesCS4B01G205600 chr5D 349373804 349374364 560 True 318.0 342 83.8970 1978 2669 2 chr5D.!!$R1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 218 0.247655 CGTTTTGGCGATGATGGTCG 60.248 55.0 0.0 0.0 44.14 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 3040 0.034896 AACGTCCACAGCTTTCCGAT 59.965 50.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.380423 AAGTAACATATTACAGAGAGCCCAT 57.620 36.000 0.00 0.00 42.83 4.00
189 194 2.367202 CGGCACTGGTGGGTAGGAT 61.367 63.158 2.84 0.00 0.00 3.24
190 195 1.046472 CGGCACTGGTGGGTAGGATA 61.046 60.000 2.84 0.00 0.00 2.59
213 218 0.247655 CGTTTTGGCGATGATGGTCG 60.248 55.000 0.00 0.00 44.14 4.79
589 1625 1.880340 CTCGAGCATCTTCACCGGC 60.880 63.158 0.00 0.00 0.00 6.13
818 1864 3.259902 GGCTTCTTAAACTAGGACGTGG 58.740 50.000 0.00 0.00 0.00 4.94
899 1945 2.027605 CAGTCCACGCGTGTCACT 59.972 61.111 34.81 30.42 0.00 3.41
912 1958 1.346068 GTGTCACTGAGAAGAAGGGCT 59.654 52.381 0.00 0.00 0.00 5.19
930 1976 1.914634 CTCGATCTGAAACGTGGAGG 58.085 55.000 0.00 0.00 0.00 4.30
1018 2064 2.971307 CCGCATTAAAAGGCAAACCAT 58.029 42.857 0.00 0.00 39.06 3.55
1060 2106 2.584673 TCGAGAGAGGCAAGGAAGG 58.415 57.895 0.00 0.00 34.84 3.46
1085 2133 2.050077 GCTCAAGGCAAACACCGC 60.050 61.111 0.00 0.00 41.35 5.68
1102 2150 1.796796 GCGCCATCTCAAAGTGGTC 59.203 57.895 0.00 0.00 37.81 4.02
1179 2227 1.386961 CTAAGCTCGCGTACATCGTC 58.613 55.000 5.77 0.00 42.13 4.20
1204 2252 1.728426 GTCGACGACGTGGTCAAGG 60.728 63.158 26.93 13.31 40.69 3.61
1227 2275 4.493747 GCCTTCTACGCCGACGCT 62.494 66.667 0.00 0.00 45.53 5.07
1287 2335 2.250921 AATCCCCATCACCATTTGCA 57.749 45.000 0.00 0.00 0.00 4.08
1300 2348 0.551396 ATTTGCACCTAGGCCTACCC 59.449 55.000 8.91 0.00 36.11 3.69
1600 2648 2.125961 GGTCGGCTACGTCAGGGAT 61.126 63.158 0.00 0.00 41.85 3.85
1602 2650 0.175073 GTCGGCTACGTCAGGGATTT 59.825 55.000 0.00 0.00 41.85 2.17
1778 2851 0.247775 CCGCCGGCAAAAATACGTAC 60.248 55.000 28.98 0.00 0.00 3.67
1779 2852 0.443088 CGCCGGCAAAAATACGTACA 59.557 50.000 28.98 0.00 0.00 2.90
1780 2853 1.528198 CGCCGGCAAAAATACGTACAG 60.528 52.381 28.98 0.00 0.00 2.74
1781 2854 1.465777 GCCGGCAAAAATACGTACAGT 59.534 47.619 24.80 0.00 0.00 3.55
1803 2876 3.418995 ACAAGTTACTCAGCCTAGTCGA 58.581 45.455 0.00 0.00 0.00 4.20
1866 2939 3.423154 GCCGTTCGCTGTTCCCAG 61.423 66.667 0.00 0.00 41.91 4.45
1867 2940 2.030562 CCGTTCGCTGTTCCCAGT 59.969 61.111 0.00 0.00 41.02 4.00
1868 2941 2.027625 CCGTTCGCTGTTCCCAGTC 61.028 63.158 0.00 0.00 41.02 3.51
1869 2942 2.027625 CGTTCGCTGTTCCCAGTCC 61.028 63.158 0.00 0.00 41.02 3.85
1870 2943 1.371558 GTTCGCTGTTCCCAGTCCT 59.628 57.895 0.00 0.00 41.02 3.85
1871 2944 0.670854 GTTCGCTGTTCCCAGTCCTC 60.671 60.000 0.00 0.00 41.02 3.71
1872 2945 2.125912 CGCTGTTCCCAGTCCTCG 60.126 66.667 0.00 0.00 41.02 4.63
1873 2946 2.435059 GCTGTTCCCAGTCCTCGC 60.435 66.667 0.00 0.00 41.02 5.03
1874 2947 2.125912 CTGTTCCCAGTCCTCGCG 60.126 66.667 0.00 0.00 33.80 5.87
1875 2948 3.649277 CTGTTCCCAGTCCTCGCGG 62.649 68.421 6.13 0.00 33.80 6.46
1879 2952 4.473520 CCCAGTCCTCGCGGCAAT 62.474 66.667 6.13 0.00 0.00 3.56
1880 2953 2.436646 CCAGTCCTCGCGGCAATT 60.437 61.111 6.13 0.00 0.00 2.32
1881 2954 2.464459 CCAGTCCTCGCGGCAATTC 61.464 63.158 6.13 0.00 0.00 2.17
1882 2955 1.448540 CAGTCCTCGCGGCAATTCT 60.449 57.895 6.13 0.00 0.00 2.40
1883 2956 1.448540 AGTCCTCGCGGCAATTCTG 60.449 57.895 6.13 0.00 0.00 3.02
1892 2965 3.420943 GCAATTCTGCCGCCGTAT 58.579 55.556 0.00 0.00 43.26 3.06
1893 2966 2.612200 GCAATTCTGCCGCCGTATA 58.388 52.632 0.00 0.00 43.26 1.47
1894 2967 0.512952 GCAATTCTGCCGCCGTATAG 59.487 55.000 0.00 0.00 43.26 1.31
1895 2968 1.865865 CAATTCTGCCGCCGTATAGT 58.134 50.000 0.00 0.00 0.00 2.12
1896 2969 2.210116 CAATTCTGCCGCCGTATAGTT 58.790 47.619 0.00 0.00 0.00 2.24
1897 2970 2.150397 ATTCTGCCGCCGTATAGTTC 57.850 50.000 0.00 0.00 0.00 3.01
1898 2971 1.108776 TTCTGCCGCCGTATAGTTCT 58.891 50.000 0.00 0.00 0.00 3.01
1899 2972 1.108776 TCTGCCGCCGTATAGTTCTT 58.891 50.000 0.00 0.00 0.00 2.52
1900 2973 1.479323 TCTGCCGCCGTATAGTTCTTT 59.521 47.619 0.00 0.00 0.00 2.52
1901 2974 1.593006 CTGCCGCCGTATAGTTCTTTG 59.407 52.381 0.00 0.00 0.00 2.77
1902 2975 1.205179 TGCCGCCGTATAGTTCTTTGA 59.795 47.619 0.00 0.00 0.00 2.69
1903 2976 2.273557 GCCGCCGTATAGTTCTTTGAA 58.726 47.619 0.00 0.00 0.00 2.69
1904 2977 2.284417 GCCGCCGTATAGTTCTTTGAAG 59.716 50.000 0.00 0.00 0.00 3.02
1905 2978 3.777478 CCGCCGTATAGTTCTTTGAAGA 58.223 45.455 0.00 0.00 0.00 2.87
1906 2979 4.178540 CCGCCGTATAGTTCTTTGAAGAA 58.821 43.478 2.16 2.16 42.41 2.52
1907 2980 4.267928 CCGCCGTATAGTTCTTTGAAGAAG 59.732 45.833 6.43 0.00 45.01 2.85
1908 2981 4.267928 CGCCGTATAGTTCTTTGAAGAAGG 59.732 45.833 6.43 4.99 45.01 3.46
1909 2982 4.571176 GCCGTATAGTTCTTTGAAGAAGGG 59.429 45.833 6.43 2.43 45.01 3.95
1910 2983 4.571176 CCGTATAGTTCTTTGAAGAAGGGC 59.429 45.833 6.43 0.00 45.01 5.19
1911 2984 5.420409 CGTATAGTTCTTTGAAGAAGGGCT 58.580 41.667 6.43 3.96 45.01 5.19
1912 2985 5.520649 CGTATAGTTCTTTGAAGAAGGGCTC 59.479 44.000 6.43 0.00 45.01 4.70
1913 2986 5.770685 ATAGTTCTTTGAAGAAGGGCTCT 57.229 39.130 6.43 3.33 45.01 4.09
1915 2988 4.140536 AGTTCTTTGAAGAAGGGCTCTTG 58.859 43.478 1.79 0.00 44.82 3.02
1916 2989 2.508526 TCTTTGAAGAAGGGCTCTTGC 58.491 47.619 1.79 0.00 44.82 4.01
1917 2990 2.815589 TCTTTGAAGAAGGGCTCTTGCC 60.816 50.000 1.79 0.00 44.82 4.52
1935 3008 3.899395 CCGGTTCCGGTTCCATTC 58.101 61.111 20.65 0.00 43.86 2.67
1936 3009 1.747745 CCGGTTCCGGTTCCATTCC 60.748 63.158 20.65 3.37 43.86 3.01
1937 3010 1.003112 CGGTTCCGGTTCCATTCCA 60.003 57.895 15.42 0.00 0.00 3.53
1938 3011 0.393808 CGGTTCCGGTTCCATTCCAT 60.394 55.000 15.42 0.00 0.00 3.41
1939 3012 1.389555 GGTTCCGGTTCCATTCCATC 58.610 55.000 0.00 0.00 0.00 3.51
1940 3013 1.340600 GGTTCCGGTTCCATTCCATCA 60.341 52.381 0.00 0.00 0.00 3.07
1941 3014 2.017049 GTTCCGGTTCCATTCCATCAG 58.983 52.381 0.00 0.00 0.00 2.90
1942 3015 1.578897 TCCGGTTCCATTCCATCAGA 58.421 50.000 0.00 0.00 0.00 3.27
1943 3016 1.912731 TCCGGTTCCATTCCATCAGAA 59.087 47.619 0.00 0.00 39.32 3.02
1944 3017 2.307392 TCCGGTTCCATTCCATCAGAAA 59.693 45.455 0.00 0.00 38.21 2.52
1945 3018 3.088532 CCGGTTCCATTCCATCAGAAAA 58.911 45.455 0.00 0.00 38.21 2.29
1946 3019 3.509575 CCGGTTCCATTCCATCAGAAAAA 59.490 43.478 0.00 0.00 38.21 1.94
1947 3020 4.380867 CCGGTTCCATTCCATCAGAAAAAG 60.381 45.833 0.00 0.00 38.21 2.27
1948 3021 4.458989 CGGTTCCATTCCATCAGAAAAAGA 59.541 41.667 0.00 0.00 38.21 2.52
1949 3022 5.048083 CGGTTCCATTCCATCAGAAAAAGAA 60.048 40.000 0.00 0.00 38.21 2.52
1950 3023 6.516527 CGGTTCCATTCCATCAGAAAAAGAAA 60.517 38.462 0.00 0.00 38.21 2.52
1951 3024 6.646653 GGTTCCATTCCATCAGAAAAAGAAAC 59.353 38.462 0.00 0.00 38.21 2.78
1952 3025 6.345096 TCCATTCCATCAGAAAAAGAAACC 57.655 37.500 0.00 0.00 38.21 3.27
1953 3026 5.837979 TCCATTCCATCAGAAAAAGAAACCA 59.162 36.000 0.00 0.00 38.21 3.67
1954 3027 5.928264 CCATTCCATCAGAAAAAGAAACCAC 59.072 40.000 0.00 0.00 38.21 4.16
1955 3028 6.462768 CCATTCCATCAGAAAAAGAAACCACA 60.463 38.462 0.00 0.00 38.21 4.17
1956 3029 5.772825 TCCATCAGAAAAAGAAACCACAG 57.227 39.130 0.00 0.00 0.00 3.66
1957 3030 5.200483 TCCATCAGAAAAAGAAACCACAGT 58.800 37.500 0.00 0.00 0.00 3.55
1958 3031 6.361433 TCCATCAGAAAAAGAAACCACAGTA 58.639 36.000 0.00 0.00 0.00 2.74
1959 3032 6.486657 TCCATCAGAAAAAGAAACCACAGTAG 59.513 38.462 0.00 0.00 0.00 2.57
1960 3033 6.263168 CCATCAGAAAAAGAAACCACAGTAGT 59.737 38.462 0.00 0.00 0.00 2.73
1961 3034 7.444183 CCATCAGAAAAAGAAACCACAGTAGTA 59.556 37.037 0.00 0.00 0.00 1.82
1962 3035 9.003658 CATCAGAAAAAGAAACCACAGTAGTAT 57.996 33.333 0.00 0.00 0.00 2.12
1963 3036 8.603242 TCAGAAAAAGAAACCACAGTAGTATC 57.397 34.615 0.00 0.00 0.00 2.24
1964 3037 7.660208 TCAGAAAAAGAAACCACAGTAGTATCC 59.340 37.037 0.00 0.00 0.00 2.59
1965 3038 7.661847 CAGAAAAAGAAACCACAGTAGTATCCT 59.338 37.037 0.00 0.00 0.00 3.24
1966 3039 8.218488 AGAAAAAGAAACCACAGTAGTATCCTT 58.782 33.333 0.00 0.00 0.00 3.36
1967 3040 9.498176 GAAAAAGAAACCACAGTAGTATCCTTA 57.502 33.333 0.00 0.00 0.00 2.69
1969 3042 9.668497 AAAAGAAACCACAGTAGTATCCTTATC 57.332 33.333 0.00 0.00 0.00 1.75
1970 3043 7.040473 AGAAACCACAGTAGTATCCTTATCG 57.960 40.000 0.00 0.00 0.00 2.92
1971 3044 5.786264 AACCACAGTAGTATCCTTATCGG 57.214 43.478 0.00 0.00 0.00 4.18
1982 3055 2.184533 TCCTTATCGGAAAGCTGTGGA 58.815 47.619 0.00 0.00 39.40 4.02
1996 3069 0.753867 TGTGGACGTTAGCCAACTCA 59.246 50.000 0.00 0.00 37.12 3.41
1998 3071 1.045407 TGGACGTTAGCCAACTCACT 58.955 50.000 0.00 0.00 31.13 3.41
2004 3077 2.801699 CGTTAGCCAACTCACTCACACA 60.802 50.000 0.00 0.00 32.09 3.72
2005 3078 3.403038 GTTAGCCAACTCACTCACACAT 58.597 45.455 0.00 0.00 0.00 3.21
2009 3082 2.548707 GCCAACTCACTCACACATCTCA 60.549 50.000 0.00 0.00 0.00 3.27
2010 3083 3.324117 CCAACTCACTCACACATCTCAG 58.676 50.000 0.00 0.00 0.00 3.35
2040 3113 3.550561 CAGCGTCTTTTGCACGATTTTA 58.449 40.909 0.00 0.00 39.75 1.52
2057 3131 1.519408 TTAGGCACGAAAAGGCTGAC 58.481 50.000 0.00 0.00 42.36 3.51
2059 3133 0.886490 AGGCACGAAAAGGCTGACTG 60.886 55.000 0.00 0.00 40.72 3.51
2086 3160 1.536766 CCACGTAGGACAACTCGTGTA 59.463 52.381 13.75 0.00 43.14 2.90
2093 3167 1.606994 GGACAACTCGTGTATGTGGCA 60.607 52.381 9.18 0.00 41.96 4.92
2096 3170 2.289382 ACAACTCGTGTATGTGGCATGA 60.289 45.455 0.00 0.00 39.29 3.07
2098 3172 1.575244 CTCGTGTATGTGGCATGAGG 58.425 55.000 0.00 0.00 42.92 3.86
2108 3182 2.670148 GGCATGAGGGGGAGTTCGT 61.670 63.158 0.00 0.00 0.00 3.85
2127 3201 3.725819 CGCACACCGGTTTTCTCA 58.274 55.556 2.97 0.00 0.00 3.27
2140 3214 0.103390 TTTCTCACCGCAGTCAACGA 59.897 50.000 0.00 0.00 0.00 3.85
2197 3273 4.811761 GCACGCCGCGAACCATTC 62.812 66.667 21.79 0.00 0.00 2.67
2202 3278 3.110139 CCGCGAACCATTCCCATG 58.890 61.111 8.23 0.00 0.00 3.66
2203 3279 1.451207 CCGCGAACCATTCCCATGA 60.451 57.895 8.23 0.00 31.07 3.07
2206 3305 1.268692 CGCGAACCATTCCCATGATTG 60.269 52.381 0.00 0.00 31.07 2.67
2215 3314 1.002069 TCCCATGATTGCCCACTCTT 58.998 50.000 0.00 0.00 0.00 2.85
2219 3318 2.662866 CATGATTGCCCACTCTTCCAT 58.337 47.619 0.00 0.00 0.00 3.41
2221 3320 4.404640 CATGATTGCCCACTCTTCCATAT 58.595 43.478 0.00 0.00 0.00 1.78
2259 3359 4.021544 GCCATGTTTTTGAAGGGTACATGA 60.022 41.667 13.41 0.00 45.46 3.07
2260 3360 5.510520 GCCATGTTTTTGAAGGGTACATGAA 60.511 40.000 13.41 0.00 45.46 2.57
2261 3361 6.520272 CCATGTTTTTGAAGGGTACATGAAA 58.480 36.000 13.41 0.00 45.46 2.69
2262 3362 6.989169 CCATGTTTTTGAAGGGTACATGAAAA 59.011 34.615 13.41 0.00 45.46 2.29
2263 3363 7.042119 CCATGTTTTTGAAGGGTACATGAAAAC 60.042 37.037 13.41 3.28 45.46 2.43
2264 3364 7.176589 TGTTTTTGAAGGGTACATGAAAACT 57.823 32.000 0.00 0.00 36.80 2.66
2265 3365 8.294954 TGTTTTTGAAGGGTACATGAAAACTA 57.705 30.769 0.00 0.00 36.80 2.24
2266 3366 8.192110 TGTTTTTGAAGGGTACATGAAAACTAC 58.808 33.333 0.00 0.00 36.80 2.73
2267 3367 6.887626 TTTGAAGGGTACATGAAAACTACC 57.112 37.500 0.00 0.00 0.00 3.18
2268 3368 5.836024 TGAAGGGTACATGAAAACTACCT 57.164 39.130 0.00 0.00 32.00 3.08
2269 3369 6.195600 TGAAGGGTACATGAAAACTACCTT 57.804 37.500 0.00 3.13 39.60 3.50
2270 3370 7.319052 TGAAGGGTACATGAAAACTACCTTA 57.681 36.000 0.00 0.00 37.22 2.69
2271 3371 7.924541 TGAAGGGTACATGAAAACTACCTTAT 58.075 34.615 0.00 0.00 37.22 1.73
2272 3372 8.387813 TGAAGGGTACATGAAAACTACCTTATT 58.612 33.333 0.00 0.00 37.22 1.40
2273 3373 9.239551 GAAGGGTACATGAAAACTACCTTATTT 57.760 33.333 0.00 0.00 37.22 1.40
2274 3374 8.575649 AGGGTACATGAAAACTACCTTATTTG 57.424 34.615 0.00 0.00 32.00 2.32
2275 3375 8.168058 AGGGTACATGAAAACTACCTTATTTGT 58.832 33.333 0.00 0.00 32.00 2.83
2276 3376 9.452287 GGGTACATGAAAACTACCTTATTTGTA 57.548 33.333 0.00 0.00 32.00 2.41
2288 3388 9.953565 ACTACCTTATTTGTAATTGTAAGCAGA 57.046 29.630 0.00 0.00 0.00 4.26
2291 3391 8.686334 ACCTTATTTGTAATTGTAAGCAGATGG 58.314 33.333 0.00 0.00 0.00 3.51
2292 3392 7.649306 CCTTATTTGTAATTGTAAGCAGATGGC 59.351 37.037 0.00 0.00 45.30 4.40
2304 3404 2.430465 GCAGATGGCAACTCTCTTTCA 58.570 47.619 0.00 0.00 43.97 2.69
2305 3405 2.161211 GCAGATGGCAACTCTCTTTCAC 59.839 50.000 0.00 0.00 43.97 3.18
2306 3406 2.746362 CAGATGGCAACTCTCTTTCACC 59.254 50.000 0.00 0.00 37.61 4.02
2307 3407 2.087646 GATGGCAACTCTCTTTCACCC 58.912 52.381 0.00 0.00 37.61 4.61
2308 3408 0.843309 TGGCAACTCTCTTTCACCCA 59.157 50.000 0.00 0.00 37.61 4.51
2309 3409 1.214175 TGGCAACTCTCTTTCACCCAA 59.786 47.619 0.00 0.00 37.61 4.12
2310 3410 2.306847 GGCAACTCTCTTTCACCCAAA 58.693 47.619 0.00 0.00 0.00 3.28
2311 3411 2.034685 GGCAACTCTCTTTCACCCAAAC 59.965 50.000 0.00 0.00 0.00 2.93
2312 3412 2.287009 GCAACTCTCTTTCACCCAAACG 60.287 50.000 0.00 0.00 0.00 3.60
2313 3413 2.943033 CAACTCTCTTTCACCCAAACGT 59.057 45.455 0.00 0.00 0.00 3.99
2314 3414 4.124238 CAACTCTCTTTCACCCAAACGTA 58.876 43.478 0.00 0.00 0.00 3.57
2315 3415 4.618920 ACTCTCTTTCACCCAAACGTAT 57.381 40.909 0.00 0.00 0.00 3.06
2316 3416 4.969484 ACTCTCTTTCACCCAAACGTATT 58.031 39.130 0.00 0.00 0.00 1.89
2317 3417 6.105397 ACTCTCTTTCACCCAAACGTATTA 57.895 37.500 0.00 0.00 0.00 0.98
2318 3418 6.708285 ACTCTCTTTCACCCAAACGTATTAT 58.292 36.000 0.00 0.00 0.00 1.28
2319 3419 7.166167 ACTCTCTTTCACCCAAACGTATTATT 58.834 34.615 0.00 0.00 0.00 1.40
2320 3420 7.664318 ACTCTCTTTCACCCAAACGTATTATTT 59.336 33.333 0.00 0.00 0.00 1.40
2321 3421 8.398878 TCTCTTTCACCCAAACGTATTATTTT 57.601 30.769 0.00 0.00 0.00 1.82
2322 3422 8.852135 TCTCTTTCACCCAAACGTATTATTTTT 58.148 29.630 0.00 0.00 0.00 1.94
2342 3442 6.487689 TTTTTGCCAGGTTTGTTTTTGTAG 57.512 33.333 0.00 0.00 0.00 2.74
2343 3443 3.172229 TGCCAGGTTTGTTTTTGTAGC 57.828 42.857 0.00 0.00 0.00 3.58
2344 3444 2.124122 GCCAGGTTTGTTTTTGTAGCG 58.876 47.619 0.00 0.00 0.00 4.26
2345 3445 2.124122 CCAGGTTTGTTTTTGTAGCGC 58.876 47.619 0.00 0.00 0.00 5.92
2346 3446 2.223711 CCAGGTTTGTTTTTGTAGCGCT 60.224 45.455 17.26 17.26 0.00 5.92
2347 3447 3.003897 CCAGGTTTGTTTTTGTAGCGCTA 59.996 43.478 14.45 14.45 0.00 4.26
2348 3448 3.972502 CAGGTTTGTTTTTGTAGCGCTAC 59.027 43.478 35.20 35.20 36.63 3.58
2349 3449 3.628487 AGGTTTGTTTTTGTAGCGCTACA 59.372 39.130 39.24 39.24 43.61 2.74
2350 3450 4.277423 AGGTTTGTTTTTGTAGCGCTACAT 59.723 37.500 41.71 24.73 44.54 2.29
2351 3451 4.381566 GGTTTGTTTTTGTAGCGCTACATG 59.618 41.667 41.71 0.00 44.54 3.21
2352 3452 5.209240 GTTTGTTTTTGTAGCGCTACATGA 58.791 37.500 41.71 31.59 44.54 3.07
2353 3453 4.398549 TGTTTTTGTAGCGCTACATGAC 57.601 40.909 41.71 35.34 44.54 3.06
2354 3454 3.810386 TGTTTTTGTAGCGCTACATGACA 59.190 39.130 41.71 36.90 44.54 3.58
2355 3455 4.273724 TGTTTTTGTAGCGCTACATGACAA 59.726 37.500 41.71 31.59 44.54 3.18
2356 3456 4.398549 TTTTGTAGCGCTACATGACAAC 57.601 40.909 41.71 21.44 44.54 3.32
2357 3457 1.624487 TGTAGCGCTACATGACAACG 58.376 50.000 39.24 0.00 40.77 4.10
2358 3458 1.200484 TGTAGCGCTACATGACAACGA 59.800 47.619 39.24 18.55 40.77 3.85
2359 3459 2.159296 TGTAGCGCTACATGACAACGAT 60.159 45.455 39.24 3.57 40.77 3.73
2360 3460 2.010145 AGCGCTACATGACAACGATT 57.990 45.000 8.99 0.00 0.00 3.34
2361 3461 1.660607 AGCGCTACATGACAACGATTG 59.339 47.619 8.99 0.00 0.00 2.67
2362 3462 1.852077 GCGCTACATGACAACGATTGC 60.852 52.381 0.00 0.00 0.00 3.56
2363 3463 1.267532 CGCTACATGACAACGATTGCC 60.268 52.381 0.00 0.00 0.00 4.52
2364 3464 1.064060 GCTACATGACAACGATTGCCC 59.936 52.381 0.00 0.00 0.00 5.36
2365 3465 2.355197 CTACATGACAACGATTGCCCA 58.645 47.619 0.00 0.00 0.00 5.36
2366 3466 1.838112 ACATGACAACGATTGCCCAT 58.162 45.000 0.00 0.00 0.00 4.00
2367 3467 2.170166 ACATGACAACGATTGCCCATT 58.830 42.857 0.00 0.00 0.00 3.16
2368 3468 2.164219 ACATGACAACGATTGCCCATTC 59.836 45.455 0.00 0.00 0.00 2.67
2369 3469 2.198827 TGACAACGATTGCCCATTCT 57.801 45.000 0.00 0.00 0.00 2.40
2370 3470 2.083774 TGACAACGATTGCCCATTCTC 58.916 47.619 0.00 0.00 0.00 2.87
2371 3471 2.290260 TGACAACGATTGCCCATTCTCT 60.290 45.455 0.00 0.00 0.00 3.10
2372 3472 2.352960 GACAACGATTGCCCATTCTCTC 59.647 50.000 0.00 0.00 0.00 3.20
2373 3473 2.290260 ACAACGATTGCCCATTCTCTCA 60.290 45.455 0.00 0.00 0.00 3.27
2374 3474 2.029838 ACGATTGCCCATTCTCTCAC 57.970 50.000 0.00 0.00 0.00 3.51
2375 3475 1.278985 ACGATTGCCCATTCTCTCACA 59.721 47.619 0.00 0.00 0.00 3.58
2376 3476 1.667724 CGATTGCCCATTCTCTCACAC 59.332 52.381 0.00 0.00 0.00 3.82
2377 3477 2.019984 GATTGCCCATTCTCTCACACC 58.980 52.381 0.00 0.00 0.00 4.16
2378 3478 0.038166 TTGCCCATTCTCTCACACCC 59.962 55.000 0.00 0.00 0.00 4.61
2379 3479 1.133181 TGCCCATTCTCTCACACCCA 61.133 55.000 0.00 0.00 0.00 4.51
2380 3480 0.038166 GCCCATTCTCTCACACCCAA 59.962 55.000 0.00 0.00 0.00 4.12
2381 3481 1.952367 GCCCATTCTCTCACACCCAAG 60.952 57.143 0.00 0.00 0.00 3.61
2382 3482 1.352352 CCCATTCTCTCACACCCAAGT 59.648 52.381 0.00 0.00 0.00 3.16
2383 3483 2.224867 CCCATTCTCTCACACCCAAGTT 60.225 50.000 0.00 0.00 0.00 2.66
2384 3484 2.816087 CCATTCTCTCACACCCAAGTTG 59.184 50.000 0.00 0.00 0.00 3.16
2385 3485 3.480470 CATTCTCTCACACCCAAGTTGT 58.520 45.455 1.45 0.00 0.00 3.32
2386 3486 2.910688 TCTCTCACACCCAAGTTGTC 57.089 50.000 1.45 0.00 0.00 3.18
2387 3487 2.115427 TCTCTCACACCCAAGTTGTCA 58.885 47.619 1.45 0.00 0.00 3.58
2388 3488 2.705658 TCTCTCACACCCAAGTTGTCAT 59.294 45.455 1.45 0.00 0.00 3.06
2389 3489 3.136443 TCTCTCACACCCAAGTTGTCATT 59.864 43.478 1.45 0.00 0.00 2.57
2390 3490 3.885297 CTCTCACACCCAAGTTGTCATTT 59.115 43.478 1.45 0.00 0.00 2.32
2391 3491 3.631686 TCTCACACCCAAGTTGTCATTTG 59.368 43.478 1.45 0.00 0.00 2.32
2392 3492 2.100584 TCACACCCAAGTTGTCATTTGC 59.899 45.455 1.45 0.00 0.00 3.68
2393 3493 1.412343 ACACCCAAGTTGTCATTTGCC 59.588 47.619 1.45 0.00 0.00 4.52
2394 3494 1.411977 CACCCAAGTTGTCATTTGCCA 59.588 47.619 1.45 0.00 0.00 4.92
2395 3495 2.037511 CACCCAAGTTGTCATTTGCCAT 59.962 45.455 1.45 0.00 0.00 4.40
2396 3496 2.037511 ACCCAAGTTGTCATTTGCCATG 59.962 45.455 1.45 0.00 0.00 3.66
2397 3497 2.037511 CCCAAGTTGTCATTTGCCATGT 59.962 45.455 1.45 0.00 0.00 3.21
2398 3498 3.494749 CCCAAGTTGTCATTTGCCATGTT 60.495 43.478 1.45 0.00 0.00 2.71
2399 3499 4.128643 CCAAGTTGTCATTTGCCATGTTT 58.871 39.130 1.45 0.00 0.00 2.83
2400 3500 4.575645 CCAAGTTGTCATTTGCCATGTTTT 59.424 37.500 1.45 0.00 0.00 2.43
2401 3501 5.066246 CCAAGTTGTCATTTGCCATGTTTTT 59.934 36.000 1.45 0.00 0.00 1.94
2402 3502 5.738118 AGTTGTCATTTGCCATGTTTTTG 57.262 34.783 0.00 0.00 0.00 2.44
2403 3503 5.426504 AGTTGTCATTTGCCATGTTTTTGA 58.573 33.333 0.00 0.00 0.00 2.69
2404 3504 5.879223 AGTTGTCATTTGCCATGTTTTTGAA 59.121 32.000 0.00 0.00 0.00 2.69
2405 3505 5.987777 TGTCATTTGCCATGTTTTTGAAG 57.012 34.783 0.00 0.00 0.00 3.02
2406 3506 4.815308 TGTCATTTGCCATGTTTTTGAAGG 59.185 37.500 0.00 0.00 0.00 3.46
2407 3507 4.213906 GTCATTTGCCATGTTTTTGAAGGG 59.786 41.667 0.00 0.00 0.00 3.95
2408 3508 3.922171 TTTGCCATGTTTTTGAAGGGT 57.078 38.095 0.00 0.00 0.00 4.34
2409 3509 2.906691 TGCCATGTTTTTGAAGGGTG 57.093 45.000 0.00 0.00 0.00 4.61
2410 3510 1.202627 TGCCATGTTTTTGAAGGGTGC 60.203 47.619 0.00 0.00 0.00 5.01
2411 3511 1.202627 GCCATGTTTTTGAAGGGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
2412 3512 2.550639 GCCATGTTTTTGAAGGGTGCAT 60.551 45.455 0.00 0.00 0.00 3.96
2413 3513 3.068560 CCATGTTTTTGAAGGGTGCATG 58.931 45.455 0.00 0.00 33.98 4.06
2414 3514 3.244146 CCATGTTTTTGAAGGGTGCATGA 60.244 43.478 0.00 0.00 35.58 3.07
2463 3563 4.280677 CAGATGGCAACTTTCTTTTACCCA 59.719 41.667 0.00 0.00 37.61 4.51
2516 3616 0.606401 AGCGCTACATGGCAACTGTT 60.606 50.000 8.99 0.00 37.61 3.16
2538 3638 3.679824 AGTGTTAGTAGGTGGCAACTC 57.320 47.619 9.14 0.35 37.61 3.01
2552 3652 5.193679 GTGGCAACTCCTAAAAGATACCAT 58.806 41.667 0.00 0.00 35.26 3.55
2579 3679 1.193323 CACATGCCTGTCTCCTCTCT 58.807 55.000 0.00 0.00 31.62 3.10
2582 3682 2.040939 CATGCCTGTCTCCTCTCTCAT 58.959 52.381 0.00 0.00 0.00 2.90
2583 3683 2.244486 TGCCTGTCTCCTCTCTCATT 57.756 50.000 0.00 0.00 0.00 2.57
2584 3684 2.544721 TGCCTGTCTCCTCTCTCATTT 58.455 47.619 0.00 0.00 0.00 2.32
2585 3685 2.909006 TGCCTGTCTCCTCTCTCATTTT 59.091 45.455 0.00 0.00 0.00 1.82
2604 3711 1.097232 TGCTATCAGTTGCCATGTGC 58.903 50.000 0.00 0.00 41.77 4.57
2627 3734 5.278266 GCTTTTGCAAGGTACATGACAACTA 60.278 40.000 0.00 0.00 46.58 2.24
2640 3747 2.299013 TGACAACTACCCTAGTGTGCTG 59.701 50.000 0.00 0.00 39.39 4.41
2689 3797 3.322254 ACCCGAAACATGTTTTTGCCATA 59.678 39.130 24.02 0.00 32.11 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.907841 TGGGCTCTCTGTAATATGTTACTTA 57.092 36.000 12.82 1.63 40.66 2.24
1 2 6.808321 TGGGCTCTCTGTAATATGTTACTT 57.192 37.500 12.82 0.00 40.66 2.24
2 3 6.554982 TCATGGGCTCTCTGTAATATGTTACT 59.445 38.462 12.82 0.00 40.66 2.24
3 4 6.759272 TCATGGGCTCTCTGTAATATGTTAC 58.241 40.000 5.47 5.47 40.48 2.50
4 5 6.014242 CCTCATGGGCTCTCTGTAATATGTTA 60.014 42.308 0.00 0.00 0.00 2.41
5 6 5.221803 CCTCATGGGCTCTCTGTAATATGTT 60.222 44.000 0.00 0.00 0.00 2.71
6 7 4.285517 CCTCATGGGCTCTCTGTAATATGT 59.714 45.833 0.00 0.00 0.00 2.29
7 8 4.285517 ACCTCATGGGCTCTCTGTAATATG 59.714 45.833 0.00 0.00 39.10 1.78
8 9 4.497516 ACCTCATGGGCTCTCTGTAATAT 58.502 43.478 0.00 0.00 39.10 1.28
9 10 3.928754 ACCTCATGGGCTCTCTGTAATA 58.071 45.455 0.00 0.00 39.10 0.98
10 11 2.769209 ACCTCATGGGCTCTCTGTAAT 58.231 47.619 0.00 0.00 39.10 1.89
11 12 2.254152 ACCTCATGGGCTCTCTGTAA 57.746 50.000 0.00 0.00 39.10 2.41
12 13 2.254152 AACCTCATGGGCTCTCTGTA 57.746 50.000 0.00 0.00 39.10 2.74
13 14 2.254152 TAACCTCATGGGCTCTCTGT 57.746 50.000 0.00 0.00 39.10 3.41
14 15 2.744494 GCTTAACCTCATGGGCTCTCTG 60.744 54.545 0.00 0.00 39.10 3.35
15 16 1.488393 GCTTAACCTCATGGGCTCTCT 59.512 52.381 0.00 0.00 39.10 3.10
16 17 1.808133 CGCTTAACCTCATGGGCTCTC 60.808 57.143 0.00 0.00 39.10 3.20
25 26 2.125673 GCCGAGCGCTTAACCTCA 60.126 61.111 13.26 0.00 0.00 3.86
57 58 0.604511 CCCGTTAAACCTCGCCAGTT 60.605 55.000 0.00 0.00 0.00 3.16
60 61 0.391927 CATCCCGTTAAACCTCGCCA 60.392 55.000 0.00 0.00 0.00 5.69
176 181 4.417426 AACGAAATATCCTACCCACCAG 57.583 45.455 0.00 0.00 0.00 4.00
177 182 4.847990 AAACGAAATATCCTACCCACCA 57.152 40.909 0.00 0.00 0.00 4.17
178 183 4.337274 CCAAAACGAAATATCCTACCCACC 59.663 45.833 0.00 0.00 0.00 4.61
189 194 3.692101 ACCATCATCGCCAAAACGAAATA 59.308 39.130 0.00 0.00 46.59 1.40
190 195 2.491693 ACCATCATCGCCAAAACGAAAT 59.508 40.909 0.00 0.00 46.59 2.17
274 279 3.941704 AAGTCATCTTCCCCATCTTCC 57.058 47.619 0.00 0.00 0.00 3.46
541 1577 3.637273 GACGCCACTGGGAAGGGT 61.637 66.667 0.00 0.00 35.59 4.34
589 1625 1.926511 GCAAGGACGAGCATGGGTTG 61.927 60.000 0.00 0.00 0.00 3.77
741 1780 1.303888 ACAGCCCAGCACCATCAAG 60.304 57.895 0.00 0.00 0.00 3.02
818 1864 0.314302 ACTGACACGTAGCCACAGAC 59.686 55.000 0.00 0.00 33.53 3.51
899 1945 1.753649 CAGATCGAGCCCTTCTTCTCA 59.246 52.381 0.00 0.00 0.00 3.27
912 1958 0.530744 CCCTCCACGTTTCAGATCGA 59.469 55.000 0.00 0.00 0.00 3.59
930 1976 3.895232 TGCACTATTCTGGACTCTTCC 57.105 47.619 0.00 0.00 43.19 3.46
1018 2064 3.893763 GCGCTCAGCTCTCGCCTA 61.894 66.667 0.00 0.00 42.71 3.93
1037 2083 2.032620 TCCTTGCCTCTCTCGATTACC 58.967 52.381 0.00 0.00 0.00 2.85
1051 2097 1.006922 GCTGTTGTGCCTTCCTTGC 60.007 57.895 0.00 0.00 0.00 4.01
1060 2106 0.102844 TTTGCCTTGAGCTGTTGTGC 59.897 50.000 0.00 0.00 44.23 4.57
1085 2133 1.081892 CTGACCACTTTGAGATGGCG 58.918 55.000 0.00 0.00 39.84 5.69
1102 2150 1.516386 CGTACGGGTGCTACTGCTG 60.516 63.158 7.57 0.00 40.48 4.41
1287 2335 0.942721 AGCTAAGGGTAGGCCTAGGT 59.057 55.000 14.38 4.53 34.45 3.08
1736 2809 3.000925 CGGTGCGTGGAAACATTAGATAC 59.999 47.826 0.00 0.00 46.14 2.24
1778 2851 5.642686 GACTAGGCTGAGTAACTTGTACTG 58.357 45.833 0.00 0.00 0.00 2.74
1779 2852 4.395542 CGACTAGGCTGAGTAACTTGTACT 59.604 45.833 0.00 0.00 0.00 2.73
1780 2853 4.394300 TCGACTAGGCTGAGTAACTTGTAC 59.606 45.833 0.00 0.00 0.00 2.90
1781 2854 4.582869 TCGACTAGGCTGAGTAACTTGTA 58.417 43.478 0.00 0.00 0.00 2.41
1803 2876 2.624838 CAGAGCAACCAACAAGACCAAT 59.375 45.455 0.00 0.00 0.00 3.16
1876 2949 1.865865 ACTATACGGCGGCAGAATTG 58.134 50.000 13.24 2.60 0.00 2.32
1877 2950 2.102588 AGAACTATACGGCGGCAGAATT 59.897 45.455 13.24 0.00 0.00 2.17
1878 2951 1.687123 AGAACTATACGGCGGCAGAAT 59.313 47.619 13.24 1.06 0.00 2.40
1879 2952 1.108776 AGAACTATACGGCGGCAGAA 58.891 50.000 13.24 0.00 0.00 3.02
1880 2953 1.108776 AAGAACTATACGGCGGCAGA 58.891 50.000 13.24 0.00 0.00 4.26
1881 2954 1.593006 CAAAGAACTATACGGCGGCAG 59.407 52.381 13.24 7.51 0.00 4.85
1882 2955 1.205179 TCAAAGAACTATACGGCGGCA 59.795 47.619 13.24 0.00 0.00 5.69
1883 2956 1.930567 TCAAAGAACTATACGGCGGC 58.069 50.000 13.24 0.00 0.00 6.53
1884 2957 3.777478 TCTTCAAAGAACTATACGGCGG 58.223 45.455 13.24 0.00 30.73 6.13
1885 2958 4.267928 CCTTCTTCAAAGAACTATACGGCG 59.732 45.833 4.80 4.80 39.95 6.46
1886 2959 4.571176 CCCTTCTTCAAAGAACTATACGGC 59.429 45.833 1.06 0.00 39.95 5.68
1887 2960 4.571176 GCCCTTCTTCAAAGAACTATACGG 59.429 45.833 1.06 1.17 39.95 4.02
1888 2961 5.420409 AGCCCTTCTTCAAAGAACTATACG 58.580 41.667 1.06 0.00 39.95 3.06
1889 2962 6.645306 AGAGCCCTTCTTCAAAGAACTATAC 58.355 40.000 1.06 0.00 39.95 1.47
1890 2963 6.875972 AGAGCCCTTCTTCAAAGAACTATA 57.124 37.500 1.06 0.00 39.95 1.31
1891 2964 5.770685 AGAGCCCTTCTTCAAAGAACTAT 57.229 39.130 1.06 0.00 39.95 2.12
1892 2965 5.308825 CAAGAGCCCTTCTTCAAAGAACTA 58.691 41.667 1.06 0.00 44.34 2.24
1893 2966 4.140536 CAAGAGCCCTTCTTCAAAGAACT 58.859 43.478 1.06 0.00 44.34 3.01
1894 2967 3.304996 GCAAGAGCCCTTCTTCAAAGAAC 60.305 47.826 1.06 0.00 44.34 3.01
1895 2968 2.887152 GCAAGAGCCCTTCTTCAAAGAA 59.113 45.455 5.17 5.17 44.34 2.52
1896 2969 2.508526 GCAAGAGCCCTTCTTCAAAGA 58.491 47.619 0.00 0.00 44.34 2.52
1919 2992 0.393808 ATGGAATGGAACCGGAACCG 60.394 55.000 9.46 6.25 39.44 4.44
1920 2993 1.340600 TGATGGAATGGAACCGGAACC 60.341 52.381 9.46 11.87 0.00 3.62
1921 2994 2.017049 CTGATGGAATGGAACCGGAAC 58.983 52.381 9.46 0.32 0.00 3.62
1922 2995 1.912731 TCTGATGGAATGGAACCGGAA 59.087 47.619 9.46 0.00 0.00 4.30
1923 2996 1.578897 TCTGATGGAATGGAACCGGA 58.421 50.000 9.46 0.00 0.00 5.14
1924 2997 2.418368 TTCTGATGGAATGGAACCGG 57.582 50.000 0.00 0.00 0.00 5.28
1925 2998 4.458989 TCTTTTTCTGATGGAATGGAACCG 59.541 41.667 0.00 0.00 33.53 4.44
1926 2999 5.982890 TCTTTTTCTGATGGAATGGAACC 57.017 39.130 0.00 0.00 33.53 3.62
1927 3000 6.646653 GGTTTCTTTTTCTGATGGAATGGAAC 59.353 38.462 0.00 0.00 33.53 3.62
1928 3001 6.326064 TGGTTTCTTTTTCTGATGGAATGGAA 59.674 34.615 0.00 0.00 33.53 3.53
1929 3002 5.837979 TGGTTTCTTTTTCTGATGGAATGGA 59.162 36.000 0.00 0.00 33.53 3.41
1930 3003 5.928264 GTGGTTTCTTTTTCTGATGGAATGG 59.072 40.000 0.00 0.00 33.53 3.16
1931 3004 6.514947 TGTGGTTTCTTTTTCTGATGGAATG 58.485 36.000 0.00 0.00 33.53 2.67
1932 3005 6.324770 ACTGTGGTTTCTTTTTCTGATGGAAT 59.675 34.615 0.00 0.00 33.53 3.01
1933 3006 5.656416 ACTGTGGTTTCTTTTTCTGATGGAA 59.344 36.000 0.00 0.00 0.00 3.53
1934 3007 5.200483 ACTGTGGTTTCTTTTTCTGATGGA 58.800 37.500 0.00 0.00 0.00 3.41
1935 3008 5.520376 ACTGTGGTTTCTTTTTCTGATGG 57.480 39.130 0.00 0.00 0.00 3.51
1936 3009 7.264373 ACTACTGTGGTTTCTTTTTCTGATG 57.736 36.000 0.00 0.00 0.00 3.07
1937 3010 9.220767 GATACTACTGTGGTTTCTTTTTCTGAT 57.779 33.333 1.10 0.00 0.00 2.90
1938 3011 7.660208 GGATACTACTGTGGTTTCTTTTTCTGA 59.340 37.037 12.76 0.00 0.00 3.27
1939 3012 7.807680 GGATACTACTGTGGTTTCTTTTTCTG 58.192 38.462 12.76 0.00 0.00 3.02
1940 3013 7.981102 GGATACTACTGTGGTTTCTTTTTCT 57.019 36.000 12.76 0.00 0.00 2.52
1963 3036 2.280628 GTCCACAGCTTTCCGATAAGG 58.719 52.381 0.00 0.00 42.97 2.69
1964 3037 1.927174 CGTCCACAGCTTTCCGATAAG 59.073 52.381 0.00 0.00 0.00 1.73
1965 3038 1.274167 ACGTCCACAGCTTTCCGATAA 59.726 47.619 0.00 0.00 0.00 1.75
1966 3039 0.892755 ACGTCCACAGCTTTCCGATA 59.107 50.000 0.00 0.00 0.00 2.92
1967 3040 0.034896 AACGTCCACAGCTTTCCGAT 59.965 50.000 0.00 0.00 0.00 4.18
1968 3041 0.675083 TAACGTCCACAGCTTTCCGA 59.325 50.000 0.00 0.00 0.00 4.55
1969 3042 1.068474 CTAACGTCCACAGCTTTCCG 58.932 55.000 0.00 0.00 0.00 4.30
1970 3043 0.796927 GCTAACGTCCACAGCTTTCC 59.203 55.000 0.00 0.00 32.46 3.13
1971 3044 0.796927 GGCTAACGTCCACAGCTTTC 59.203 55.000 10.12 0.00 35.60 2.62
1972 3045 0.107831 TGGCTAACGTCCACAGCTTT 59.892 50.000 10.12 0.00 35.60 3.51
1973 3046 0.107831 TTGGCTAACGTCCACAGCTT 59.892 50.000 10.12 0.00 35.60 3.74
1974 3047 0.602905 GTTGGCTAACGTCCACAGCT 60.603 55.000 0.00 0.00 35.60 4.24
1975 3048 0.602905 AGTTGGCTAACGTCCACAGC 60.603 55.000 7.35 0.00 41.71 4.40
1976 3049 1.270094 TGAGTTGGCTAACGTCCACAG 60.270 52.381 7.35 0.00 41.71 3.66
1982 3055 1.411246 TGTGAGTGAGTTGGCTAACGT 59.589 47.619 7.35 0.00 41.71 3.99
1996 3069 0.244994 GGCGACTGAGATGTGTGAGT 59.755 55.000 0.00 0.00 0.00 3.41
1998 3071 1.212751 CGGCGACTGAGATGTGTGA 59.787 57.895 0.00 0.00 0.00 3.58
2004 3077 3.069980 GCTGGACGGCGACTGAGAT 62.070 63.158 16.62 0.00 0.00 2.75
2005 3078 3.749064 GCTGGACGGCGACTGAGA 61.749 66.667 16.62 0.00 0.00 3.27
2040 3113 0.886490 CAGTCAGCCTTTTCGTGCCT 60.886 55.000 0.00 0.00 0.00 4.75
2086 3160 1.217057 AACTCCCCCTCATGCCACAT 61.217 55.000 0.00 0.00 0.00 3.21
2093 3167 2.058595 CGGACGAACTCCCCCTCAT 61.059 63.158 0.00 0.00 35.21 2.90
2098 3172 3.998672 TGTGCGGACGAACTCCCC 61.999 66.667 1.60 0.00 35.21 4.81
2108 3182 1.595929 GAGAAAACCGGTGTGCGGA 60.596 57.895 8.52 0.00 0.00 5.54
2127 3201 2.325082 GGCAATCGTTGACTGCGGT 61.325 57.895 0.00 0.00 36.93 5.68
2132 3206 0.670546 CCGACTGGCAATCGTTGACT 60.671 55.000 17.57 0.00 40.19 3.41
2158 3234 2.028484 GCGACGACAGTTCCACCA 59.972 61.111 0.00 0.00 0.00 4.17
2190 3266 1.273724 TGGGCAATCATGGGAATGGTT 60.274 47.619 0.00 0.00 0.00 3.67
2195 3271 1.002069 AGAGTGGGCAATCATGGGAA 58.998 50.000 0.00 0.00 0.00 3.97
2197 3273 1.396653 GAAGAGTGGGCAATCATGGG 58.603 55.000 0.00 0.00 0.00 4.00
2199 3275 2.133281 TGGAAGAGTGGGCAATCATG 57.867 50.000 0.00 0.00 0.00 3.07
2200 3276 4.508047 GGATATGGAAGAGTGGGCAATCAT 60.508 45.833 0.00 0.00 0.00 2.45
2202 3278 3.181440 TGGATATGGAAGAGTGGGCAATC 60.181 47.826 0.00 0.00 0.00 2.67
2203 3279 2.785269 TGGATATGGAAGAGTGGGCAAT 59.215 45.455 0.00 0.00 0.00 3.56
2206 3305 2.856222 CTTGGATATGGAAGAGTGGGC 58.144 52.381 0.00 0.00 0.00 5.36
2215 3314 3.633525 GCAAATGACAGCTTGGATATGGA 59.366 43.478 0.00 0.00 0.00 3.41
2219 3318 3.084536 TGGCAAATGACAGCTTGGATA 57.915 42.857 0.00 0.00 0.00 2.59
2221 3320 1.546923 CATGGCAAATGACAGCTTGGA 59.453 47.619 0.00 0.00 35.91 3.53
2262 3362 9.953565 TCTGCTTACAATTACAAATAAGGTAGT 57.046 29.630 0.00 0.00 0.00 2.73
2265 3365 8.686334 CCATCTGCTTACAATTACAAATAAGGT 58.314 33.333 0.00 0.00 0.00 3.50
2266 3366 7.649306 GCCATCTGCTTACAATTACAAATAAGG 59.351 37.037 0.00 0.00 36.87 2.69
2267 3367 8.190122 TGCCATCTGCTTACAATTACAAATAAG 58.810 33.333 0.00 0.00 42.00 1.73
2268 3368 8.060931 TGCCATCTGCTTACAATTACAAATAA 57.939 30.769 0.00 0.00 42.00 1.40
2269 3369 7.637631 TGCCATCTGCTTACAATTACAAATA 57.362 32.000 0.00 0.00 42.00 1.40
2270 3370 6.528537 TGCCATCTGCTTACAATTACAAAT 57.471 33.333 0.00 0.00 42.00 2.32
2271 3371 5.973899 TGCCATCTGCTTACAATTACAAA 57.026 34.783 0.00 0.00 42.00 2.83
2272 3372 5.476599 AGTTGCCATCTGCTTACAATTACAA 59.523 36.000 0.00 0.00 42.00 2.41
2273 3373 5.009631 AGTTGCCATCTGCTTACAATTACA 58.990 37.500 0.00 0.00 42.00 2.41
2274 3374 5.355350 AGAGTTGCCATCTGCTTACAATTAC 59.645 40.000 0.00 0.00 42.00 1.89
2275 3375 5.500234 AGAGTTGCCATCTGCTTACAATTA 58.500 37.500 0.00 0.00 42.00 1.40
2276 3376 4.338879 AGAGTTGCCATCTGCTTACAATT 58.661 39.130 0.00 0.00 42.00 2.32
2277 3377 3.944015 GAGAGTTGCCATCTGCTTACAAT 59.056 43.478 0.00 0.00 42.00 2.71
2278 3378 3.008375 AGAGAGTTGCCATCTGCTTACAA 59.992 43.478 0.00 0.00 42.00 2.41
2279 3379 2.568956 AGAGAGTTGCCATCTGCTTACA 59.431 45.455 0.00 0.00 42.00 2.41
2280 3380 3.258971 AGAGAGTTGCCATCTGCTTAC 57.741 47.619 0.00 0.00 42.00 2.34
2281 3381 3.988976 AAGAGAGTTGCCATCTGCTTA 57.011 42.857 0.00 0.00 42.00 3.09
2282 3382 2.875094 AAGAGAGTTGCCATCTGCTT 57.125 45.000 0.00 0.00 42.00 3.91
2283 3383 2.039480 TGAAAGAGAGTTGCCATCTGCT 59.961 45.455 0.00 0.00 42.00 4.24
2284 3384 2.161211 GTGAAAGAGAGTTGCCATCTGC 59.839 50.000 0.00 0.00 41.77 4.26
2285 3385 2.746362 GGTGAAAGAGAGTTGCCATCTG 59.254 50.000 0.00 0.00 0.00 2.90
2286 3386 2.290577 GGGTGAAAGAGAGTTGCCATCT 60.291 50.000 0.00 0.00 0.00 2.90
2287 3387 2.087646 GGGTGAAAGAGAGTTGCCATC 58.912 52.381 0.00 0.00 0.00 3.51
2288 3388 1.425066 TGGGTGAAAGAGAGTTGCCAT 59.575 47.619 0.00 0.00 0.00 4.40
2289 3389 0.843309 TGGGTGAAAGAGAGTTGCCA 59.157 50.000 0.00 0.00 0.00 4.92
2290 3390 1.981256 TTGGGTGAAAGAGAGTTGCC 58.019 50.000 0.00 0.00 0.00 4.52
2291 3391 2.287009 CGTTTGGGTGAAAGAGAGTTGC 60.287 50.000 0.00 0.00 0.00 4.17
2292 3392 2.943033 ACGTTTGGGTGAAAGAGAGTTG 59.057 45.455 0.00 0.00 0.00 3.16
2293 3393 3.277142 ACGTTTGGGTGAAAGAGAGTT 57.723 42.857 0.00 0.00 0.00 3.01
2294 3394 4.618920 ATACGTTTGGGTGAAAGAGAGT 57.381 40.909 0.00 0.00 0.00 3.24
2295 3395 7.611213 AATAATACGTTTGGGTGAAAGAGAG 57.389 36.000 0.00 0.00 0.00 3.20
2296 3396 7.989416 AAATAATACGTTTGGGTGAAAGAGA 57.011 32.000 0.00 0.00 0.00 3.10
2319 3419 5.106515 GCTACAAAAACAAACCTGGCAAAAA 60.107 36.000 0.00 0.00 0.00 1.94
2320 3420 4.393371 GCTACAAAAACAAACCTGGCAAAA 59.607 37.500 0.00 0.00 0.00 2.44
2321 3421 3.935828 GCTACAAAAACAAACCTGGCAAA 59.064 39.130 0.00 0.00 0.00 3.68
2322 3422 3.526534 GCTACAAAAACAAACCTGGCAA 58.473 40.909 0.00 0.00 0.00 4.52
2323 3423 2.480416 CGCTACAAAAACAAACCTGGCA 60.480 45.455 0.00 0.00 0.00 4.92
2324 3424 2.124122 CGCTACAAAAACAAACCTGGC 58.876 47.619 0.00 0.00 0.00 4.85
2325 3425 2.124122 GCGCTACAAAAACAAACCTGG 58.876 47.619 0.00 0.00 0.00 4.45
2326 3426 3.078594 AGCGCTACAAAAACAAACCTG 57.921 42.857 8.99 0.00 0.00 4.00
2327 3427 3.628487 TGTAGCGCTACAAAAACAAACCT 59.372 39.130 40.32 3.72 42.49 3.50
2328 3428 3.954999 TGTAGCGCTACAAAAACAAACC 58.045 40.909 40.32 15.76 42.49 3.27
2339 3439 1.904144 TCGTTGTCATGTAGCGCTAC 58.096 50.000 35.20 35.20 36.63 3.58
2340 3440 2.857748 CAATCGTTGTCATGTAGCGCTA 59.142 45.455 14.45 14.45 0.00 4.26
2341 3441 1.660607 CAATCGTTGTCATGTAGCGCT 59.339 47.619 17.26 17.26 0.00 5.92
2342 3442 1.852077 GCAATCGTTGTCATGTAGCGC 60.852 52.381 0.00 0.00 0.00 5.92
2343 3443 1.267532 GGCAATCGTTGTCATGTAGCG 60.268 52.381 0.00 0.00 34.79 4.26
2344 3444 1.064060 GGGCAATCGTTGTCATGTAGC 59.936 52.381 0.00 0.00 36.88 3.58
2345 3445 2.355197 TGGGCAATCGTTGTCATGTAG 58.645 47.619 0.00 0.00 36.88 2.74
2346 3446 2.481289 TGGGCAATCGTTGTCATGTA 57.519 45.000 0.00 0.00 36.88 2.29
2347 3447 1.838112 ATGGGCAATCGTTGTCATGT 58.162 45.000 0.00 0.00 36.88 3.21
2348 3448 2.424601 AGAATGGGCAATCGTTGTCATG 59.575 45.455 5.05 0.00 36.88 3.07
2349 3449 2.684881 GAGAATGGGCAATCGTTGTCAT 59.315 45.455 5.05 4.67 36.88 3.06
2350 3450 2.083774 GAGAATGGGCAATCGTTGTCA 58.916 47.619 5.05 2.99 36.88 3.58
2351 3451 2.352960 GAGAGAATGGGCAATCGTTGTC 59.647 50.000 0.00 0.00 33.62 3.18
2352 3452 2.290260 TGAGAGAATGGGCAATCGTTGT 60.290 45.455 0.00 0.00 0.00 3.32
2353 3453 2.096496 GTGAGAGAATGGGCAATCGTTG 59.904 50.000 0.00 0.00 0.00 4.10
2354 3454 2.290260 TGTGAGAGAATGGGCAATCGTT 60.290 45.455 0.00 0.00 0.00 3.85
2355 3455 1.278985 TGTGAGAGAATGGGCAATCGT 59.721 47.619 0.00 0.00 0.00 3.73
2356 3456 1.667724 GTGTGAGAGAATGGGCAATCG 59.332 52.381 0.00 0.00 0.00 3.34
2357 3457 2.019984 GGTGTGAGAGAATGGGCAATC 58.980 52.381 0.00 0.00 0.00 2.67
2358 3458 1.341383 GGGTGTGAGAGAATGGGCAAT 60.341 52.381 0.00 0.00 0.00 3.56
2359 3459 0.038166 GGGTGTGAGAGAATGGGCAA 59.962 55.000 0.00 0.00 0.00 4.52
2360 3460 1.133181 TGGGTGTGAGAGAATGGGCA 61.133 55.000 0.00 0.00 0.00 5.36
2361 3461 0.038166 TTGGGTGTGAGAGAATGGGC 59.962 55.000 0.00 0.00 0.00 5.36
2362 3462 1.352352 ACTTGGGTGTGAGAGAATGGG 59.648 52.381 0.00 0.00 0.00 4.00
2363 3463 2.816087 CAACTTGGGTGTGAGAGAATGG 59.184 50.000 0.00 0.00 0.00 3.16
2364 3464 3.480470 ACAACTTGGGTGTGAGAGAATG 58.520 45.455 0.00 0.00 0.00 2.67
2365 3465 3.136443 TGACAACTTGGGTGTGAGAGAAT 59.864 43.478 0.00 0.00 0.00 2.40
2366 3466 2.503765 TGACAACTTGGGTGTGAGAGAA 59.496 45.455 0.00 0.00 0.00 2.87
2367 3467 2.115427 TGACAACTTGGGTGTGAGAGA 58.885 47.619 0.00 0.00 0.00 3.10
2368 3468 2.620251 TGACAACTTGGGTGTGAGAG 57.380 50.000 0.00 0.00 0.00 3.20
2369 3469 3.576078 AATGACAACTTGGGTGTGAGA 57.424 42.857 0.00 0.00 0.00 3.27
2370 3470 3.796504 GCAAATGACAACTTGGGTGTGAG 60.797 47.826 0.00 0.00 0.00 3.51
2371 3471 2.100584 GCAAATGACAACTTGGGTGTGA 59.899 45.455 0.00 0.00 0.00 3.58
2372 3472 2.472816 GCAAATGACAACTTGGGTGTG 58.527 47.619 0.00 0.00 0.00 3.82
2373 3473 1.412343 GGCAAATGACAACTTGGGTGT 59.588 47.619 0.00 0.00 0.00 4.16
2374 3474 1.411977 TGGCAAATGACAACTTGGGTG 59.588 47.619 0.00 0.00 0.00 4.61
2375 3475 1.786937 TGGCAAATGACAACTTGGGT 58.213 45.000 0.00 0.00 0.00 4.51
2376 3476 2.037511 ACATGGCAAATGACAACTTGGG 59.962 45.455 5.69 0.00 36.16 4.12
2377 3477 3.389925 ACATGGCAAATGACAACTTGG 57.610 42.857 5.69 0.00 36.16 3.61
2378 3478 5.738118 AAAACATGGCAAATGACAACTTG 57.262 34.783 5.69 0.00 36.16 3.16
2379 3479 5.879223 TCAAAAACATGGCAAATGACAACTT 59.121 32.000 5.69 0.00 36.16 2.66
2380 3480 5.426504 TCAAAAACATGGCAAATGACAACT 58.573 33.333 5.69 0.00 36.16 3.16
2381 3481 5.731599 TCAAAAACATGGCAAATGACAAC 57.268 34.783 5.69 0.00 36.16 3.32
2382 3482 5.296283 CCTTCAAAAACATGGCAAATGACAA 59.704 36.000 5.69 0.00 36.16 3.18
2383 3483 4.815308 CCTTCAAAAACATGGCAAATGACA 59.185 37.500 5.69 0.00 37.54 3.58
2384 3484 4.213906 CCCTTCAAAAACATGGCAAATGAC 59.786 41.667 5.69 0.00 0.00 3.06
2385 3485 4.141528 ACCCTTCAAAAACATGGCAAATGA 60.142 37.500 5.69 0.00 0.00 2.57
2386 3486 4.023878 CACCCTTCAAAAACATGGCAAATG 60.024 41.667 0.00 0.00 0.00 2.32
2387 3487 4.136051 CACCCTTCAAAAACATGGCAAAT 58.864 39.130 0.00 0.00 0.00 2.32
2388 3488 3.539604 CACCCTTCAAAAACATGGCAAA 58.460 40.909 0.00 0.00 0.00 3.68
2389 3489 2.744494 GCACCCTTCAAAAACATGGCAA 60.744 45.455 0.00 0.00 0.00 4.52
2390 3490 1.202627 GCACCCTTCAAAAACATGGCA 60.203 47.619 0.00 0.00 0.00 4.92
2391 3491 1.202627 TGCACCCTTCAAAAACATGGC 60.203 47.619 0.00 0.00 0.00 4.40
2392 3492 2.906691 TGCACCCTTCAAAAACATGG 57.093 45.000 0.00 0.00 0.00 3.66
2393 3493 3.992643 TCATGCACCCTTCAAAAACATG 58.007 40.909 0.00 0.00 35.81 3.21
2394 3494 4.686191 TTCATGCACCCTTCAAAAACAT 57.314 36.364 0.00 0.00 0.00 2.71
2395 3495 4.478206 TTTCATGCACCCTTCAAAAACA 57.522 36.364 0.00 0.00 0.00 2.83
2396 3496 4.875536 AGTTTTCATGCACCCTTCAAAAAC 59.124 37.500 0.00 5.80 36.09 2.43
2397 3497 4.874966 CAGTTTTCATGCACCCTTCAAAAA 59.125 37.500 0.00 0.00 0.00 1.94
2398 3498 4.440880 CAGTTTTCATGCACCCTTCAAAA 58.559 39.130 0.00 0.00 0.00 2.44
2399 3499 3.740764 GCAGTTTTCATGCACCCTTCAAA 60.741 43.478 0.00 0.00 43.31 2.69
2400 3500 2.224018 GCAGTTTTCATGCACCCTTCAA 60.224 45.455 0.00 0.00 43.31 2.69
2401 3501 1.340889 GCAGTTTTCATGCACCCTTCA 59.659 47.619 0.00 0.00 43.31 3.02
2402 3502 1.337167 GGCAGTTTTCATGCACCCTTC 60.337 52.381 0.00 0.00 45.68 3.46
2403 3503 0.681175 GGCAGTTTTCATGCACCCTT 59.319 50.000 0.00 0.00 45.68 3.95
2404 3504 1.187567 GGGCAGTTTTCATGCACCCT 61.188 55.000 0.00 0.00 45.68 4.34
2405 3505 1.293179 GGGCAGTTTTCATGCACCC 59.707 57.895 0.00 0.00 45.68 4.61
2406 3506 4.994744 GGGCAGTTTTCATGCACC 57.005 55.556 0.00 0.00 45.68 5.01
2408 3508 3.577848 ACAAATAGGGCAGTTTTCATGCA 59.422 39.130 0.00 0.00 45.68 3.96
2409 3509 3.928375 CACAAATAGGGCAGTTTTCATGC 59.072 43.478 0.00 0.00 43.09 4.06
2410 3510 5.389859 TCACAAATAGGGCAGTTTTCATG 57.610 39.130 0.00 0.00 0.00 3.07
2411 3511 6.014327 ACAATCACAAATAGGGCAGTTTTCAT 60.014 34.615 0.00 0.00 0.00 2.57
2412 3512 5.304101 ACAATCACAAATAGGGCAGTTTTCA 59.696 36.000 0.00 0.00 0.00 2.69
2413 3513 5.783111 ACAATCACAAATAGGGCAGTTTTC 58.217 37.500 0.00 0.00 0.00 2.29
2414 3514 5.806654 ACAATCACAAATAGGGCAGTTTT 57.193 34.783 0.00 0.00 0.00 2.43
2463 3563 7.311364 AGACGTGGCAATAAATAATACGTTT 57.689 32.000 0.00 0.00 42.43 3.60
2516 3616 4.020839 GGAGTTGCCACCTACTAACACTAA 60.021 45.833 0.00 0.00 36.34 2.24
2538 3638 3.057734 GGCGACGATGGTATCTTTTAGG 58.942 50.000 0.00 0.00 0.00 2.69
2541 3641 1.208535 TGGGCGACGATGGTATCTTTT 59.791 47.619 0.00 0.00 0.00 2.27
2579 3679 4.463539 ACATGGCAACTGATAGCAAAATGA 59.536 37.500 0.00 0.00 37.61 2.57
2582 3682 3.614630 GCACATGGCAACTGATAGCAAAA 60.615 43.478 0.00 0.00 43.97 2.44
2583 3683 2.094597 GCACATGGCAACTGATAGCAAA 60.095 45.455 0.00 0.00 43.97 3.68
2584 3684 1.473677 GCACATGGCAACTGATAGCAA 59.526 47.619 0.00 0.00 43.97 3.91
2585 3685 1.097232 GCACATGGCAACTGATAGCA 58.903 50.000 0.00 0.00 43.97 3.49
2604 3711 5.186996 AGTTGTCATGTACCTTGCAAAAG 57.813 39.130 0.00 0.00 0.00 2.27
2612 3719 4.710375 CACTAGGGTAGTTGTCATGTACCT 59.290 45.833 8.81 0.00 36.76 3.08
2627 3734 0.613777 GCTTACCAGCACACTAGGGT 59.386 55.000 0.00 0.00 46.49 4.34
2640 3747 2.093235 AGAGAGTTGCCATCTGCTTACC 60.093 50.000 0.00 0.00 42.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.