Multiple sequence alignment - TraesCS4B01G204800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G204800 chr4B 100.000 6608 0 0 1 6608 436892455 436885848 0.000000e+00 12203.0
1 TraesCS4B01G204800 chr4B 93.902 82 4 1 6176 6256 192260024 192259943 9.000000e-24 122.0
2 TraesCS4B01G204800 chr4B 98.039 51 1 0 4834 4884 436887567 436887517 9.130000e-14 89.8
3 TraesCS4B01G204800 chr4B 98.039 51 1 0 4889 4939 436887622 436887572 9.130000e-14 89.8
4 TraesCS4B01G204800 chr4D 93.195 4923 184 52 1 4884 353425433 353420623 0.000000e+00 7095.0
5 TraesCS4B01G204800 chr4D 95.782 1304 25 10 4889 6178 353420673 353419386 0.000000e+00 2076.0
6 TraesCS4B01G204800 chr3B 94.874 2887 118 16 2007 4884 671429856 671432721 0.000000e+00 4484.0
7 TraesCS4B01G204800 chr3B 95.186 2846 106 18 2054 4884 671362951 671365780 0.000000e+00 4468.0
8 TraesCS4B01G204800 chr3B 93.499 1492 69 8 4889 6358 671432671 671434156 0.000000e+00 2193.0
9 TraesCS4B01G204800 chr3B 97.081 651 18 1 4889 5539 671365730 671366379 0.000000e+00 1096.0
10 TraesCS4B01G204800 chr3B 90.692 795 42 16 5582 6358 671366381 671367161 0.000000e+00 1029.0
11 TraesCS4B01G204800 chr3B 92.509 267 5 1 6357 6608 192025188 192024922 1.050000e-97 368.0
12 TraesCS4B01G204800 chr3B 92.337 261 15 3 1702 1958 671362367 671362626 3.770000e-97 366.0
13 TraesCS4B01G204800 chr3B 88.930 271 16 5 1702 1959 671429184 671429453 8.270000e-84 322.0
14 TraesCS4B01G204800 chr3B 81.481 189 23 4 6175 6352 273754628 273754441 1.920000e-30 145.0
15 TraesCS4B01G204800 chr4A 88.020 2596 174 66 2297 4766 111908749 111911333 0.000000e+00 2944.0
16 TraesCS4B01G204800 chr4A 85.699 1832 128 62 1 1769 111906419 111908179 0.000000e+00 1808.0
17 TraesCS4B01G204800 chr4A 92.772 927 41 12 4988 5889 111911771 111912696 0.000000e+00 1317.0
18 TraesCS4B01G204800 chr4A 88.845 251 13 8 5938 6175 111912696 111912944 1.800000e-75 294.0
19 TraesCS4B01G204800 chr4A 93.333 75 5 0 6446 6520 692965511 692965585 1.950000e-20 111.0
20 TraesCS4B01G204800 chr4A 90.141 71 7 0 4786 4856 111911740 111911810 7.060000e-15 93.5
21 TraesCS4B01G204800 chr1A 93.258 267 3 1 6357 6608 6630443 6630177 4.840000e-101 379.0
22 TraesCS4B01G204800 chr1A 93.258 267 3 1 6357 6608 173775355 173775621 4.840000e-101 379.0
23 TraesCS4B01G204800 chr1A 80.645 186 24 4 6178 6352 62472225 62472409 4.160000e-27 134.0
24 TraesCS4B01G204800 chr1A 88.889 81 8 1 6177 6256 137851763 137851843 1.520000e-16 99.0
25 TraesCS4B01G204800 chr5B 80.571 175 22 4 6177 6340 205710957 205710784 2.500000e-24 124.0
26 TraesCS4B01G204800 chr2B 94.595 74 4 0 6446 6519 39922136 39922209 1.510000e-21 115.0
27 TraesCS4B01G204800 chr2B 86.517 89 10 2 6517 6605 241250007 241249921 5.450000e-16 97.1
28 TraesCS4B01G204800 chr2B 89.231 65 7 0 6177 6241 297451462 297451526 1.530000e-11 82.4
29 TraesCS4B01G204800 chr2D 95.652 69 3 0 6452 6520 189521556 189521488 1.950000e-20 111.0
30 TraesCS4B01G204800 chr7B 93.243 74 5 0 6446 6519 537792993 537792920 7.010000e-20 110.0
31 TraesCS4B01G204800 chr7B 88.506 87 7 3 6435 6520 71654668 71654752 1.170000e-17 102.0
32 TraesCS4B01G204800 chr1D 93.243 74 5 0 6446 6519 34936759 34936832 7.010000e-20 110.0
33 TraesCS4B01G204800 chr6D 89.157 83 7 2 6517 6599 384287795 384287875 1.170000e-17 102.0
34 TraesCS4B01G204800 chr6A 80.247 81 14 2 6175 6253 235086241 235086321 7.160000e-05 60.2
35 TraesCS4B01G204800 chrUn 97.059 34 1 0 6177 6210 5443725 5443758 2.570000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G204800 chr4B 436885848 436892455 6607 True 12203.00 12203 100.000000 1 6608 1 chr4B.!!$R2 6607
1 TraesCS4B01G204800 chr4D 353419386 353425433 6047 True 4585.50 7095 94.488500 1 6178 2 chr4D.!!$R1 6177
2 TraesCS4B01G204800 chr3B 671429184 671434156 4972 False 2333.00 4484 92.434333 1702 6358 3 chr3B.!!$F2 4656
3 TraesCS4B01G204800 chr3B 671362367 671367161 4794 False 1739.75 4468 93.824000 1702 6358 4 chr3B.!!$F1 4656
4 TraesCS4B01G204800 chr4A 111906419 111912944 6525 False 1291.30 2944 89.095400 1 6175 5 chr4A.!!$F2 6174

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 455 0.253394 AGGAAGGGGAAAGGAGGAGG 60.253 60.0 0.00 0.00 0.00 4.30 F
1179 1232 0.320771 AGCACATCTTCGACGCCTTT 60.321 50.0 0.00 0.00 0.00 3.11 F
1825 2084 0.109964 GTTTGTGTGTGTGTGTGCGT 60.110 50.0 0.00 0.00 0.00 5.24 F
2016 2676 0.962855 TTGTGTGTGTGTGTGGTGGG 60.963 55.0 0.00 0.00 0.00 4.61 F
3706 4437 1.160329 ACTCTTCGCAAGCGCTTTGT 61.160 50.0 22.51 7.85 39.08 2.83 F
4870 5918 0.606096 TGCTAAGCTACCACTTCGCA 59.394 50.0 0.00 0.00 43.58 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 1471 0.178998 TCGCTATCGAGCCTAACCCT 60.179 55.000 0.00 0.00 46.86 4.34 R
1997 2657 0.962855 CCCACCACACACACACACAA 60.963 55.000 0.00 0.00 0.00 3.33 R
3261 3964 1.932338 ACCCTTGGATGTCCCATCATT 59.068 47.619 6.56 0.00 46.10 2.57 R
3973 4734 2.187958 TGCTCCAGCCTAGCTTTTCTA 58.812 47.619 0.00 0.00 40.73 2.10 R
5385 6470 0.675837 GATCAGGCTGCAGCAGACAA 60.676 55.000 37.63 17.99 42.99 3.18 R
6499 7627 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
324 325 2.029964 GCACGTCTTGTTCCCCGA 59.970 61.111 0.00 0.00 0.00 5.14
453 454 1.208706 GAGGAAGGGGAAAGGAGGAG 58.791 60.000 0.00 0.00 0.00 3.69
454 455 0.253394 AGGAAGGGGAAAGGAGGAGG 60.253 60.000 0.00 0.00 0.00 4.30
583 593 0.755327 ATGGCAGGCCGGTAATTTCC 60.755 55.000 1.90 0.00 39.42 3.13
659 669 3.454587 AACCGAACAGCCAGCGACA 62.455 57.895 0.00 0.00 0.00 4.35
721 732 2.342648 GACGGGCGAGGAAACTGT 59.657 61.111 0.00 0.00 44.43 3.55
723 734 2.030562 CGGGCGAGGAAACTGTGT 59.969 61.111 0.00 0.00 44.43 3.72
778 800 3.419580 TCGGGTCGGGTAGGGCTA 61.420 66.667 0.00 0.00 0.00 3.93
975 1016 1.597027 CCTAGCAATAACGCCCGGG 60.597 63.158 19.09 19.09 0.00 5.73
1006 1050 1.172812 AGACCGATCGATCATGGCGA 61.173 55.000 24.40 12.66 42.48 5.54
1140 1193 1.299468 GCTCTACGTGGGCGATCTG 60.299 63.158 0.00 0.00 42.00 2.90
1179 1232 0.320771 AGCACATCTTCGACGCCTTT 60.321 50.000 0.00 0.00 0.00 3.11
1263 1316 5.347907 GCTTCGCTATGGCTACGTAAATTAT 59.652 40.000 0.00 0.00 36.09 1.28
1306 1390 1.065926 GCACACTGTCTCCATCCATCA 60.066 52.381 0.00 0.00 0.00 3.07
1308 1392 3.464907 CACACTGTCTCCATCCATCATC 58.535 50.000 0.00 0.00 0.00 2.92
1351 1435 1.503542 GCGTGTGCTGCTGCTTATT 59.496 52.632 17.00 0.00 40.48 1.40
1365 1449 7.703621 GCTGCTGCTTATTTATCTTCAATTTCA 59.296 33.333 8.53 0.00 36.03 2.69
1379 1463 8.620116 TCTTCAATTTCAATTTTTCCCAATCC 57.380 30.769 0.00 0.00 0.00 3.01
1380 1464 8.216423 TCTTCAATTTCAATTTTTCCCAATCCA 58.784 29.630 0.00 0.00 0.00 3.41
1381 1465 7.742556 TCAATTTCAATTTTTCCCAATCCAC 57.257 32.000 0.00 0.00 0.00 4.02
1382 1466 7.516452 TCAATTTCAATTTTTCCCAATCCACT 58.484 30.769 0.00 0.00 0.00 4.00
1383 1467 7.661027 TCAATTTCAATTTTTCCCAATCCACTC 59.339 33.333 0.00 0.00 0.00 3.51
1384 1468 5.482163 TTCAATTTTTCCCAATCCACTCC 57.518 39.130 0.00 0.00 0.00 3.85
1385 1469 4.487804 TCAATTTTTCCCAATCCACTCCA 58.512 39.130 0.00 0.00 0.00 3.86
1386 1470 5.092968 TCAATTTTTCCCAATCCACTCCAT 58.907 37.500 0.00 0.00 0.00 3.41
1387 1471 6.259893 TCAATTTTTCCCAATCCACTCCATA 58.740 36.000 0.00 0.00 0.00 2.74
1388 1472 6.380846 TCAATTTTTCCCAATCCACTCCATAG 59.619 38.462 0.00 0.00 0.00 2.23
1389 1473 3.951563 TTTCCCAATCCACTCCATAGG 57.048 47.619 0.00 0.00 0.00 2.57
1398 1482 1.694696 CCACTCCATAGGGTTAGGCTC 59.305 57.143 0.00 0.00 34.93 4.70
1526 1610 5.266733 ACTGTCAAACATCTTTGCATTGT 57.733 34.783 0.00 0.00 37.31 2.71
1527 1611 5.663456 ACTGTCAAACATCTTTGCATTGTT 58.337 33.333 0.00 0.00 37.31 2.83
1536 1620 8.891671 AACATCTTTGCATTGTTTCAAAGTAT 57.108 26.923 12.56 4.96 45.53 2.12
1537 1621 9.979578 AACATCTTTGCATTGTTTCAAAGTATA 57.020 25.926 12.56 0.00 45.53 1.47
1664 1760 1.774254 TCATCGGTCCCTTATGGCAAT 59.226 47.619 0.00 0.00 0.00 3.56
1665 1761 2.174639 TCATCGGTCCCTTATGGCAATT 59.825 45.455 0.00 0.00 0.00 2.32
1676 1772 1.702840 TGGCAATTGGGGGCATAGT 59.297 52.632 7.72 0.00 35.74 2.12
1726 1822 1.004628 TGCACCCATCACATAACTGCT 59.995 47.619 0.00 0.00 0.00 4.24
1780 2036 6.850823 TCGCACGCAATTTAATTATTGATCTC 59.149 34.615 5.32 0.00 37.65 2.75
1783 2039 9.023967 GCACGCAATTTAATTATTGATCTCTTT 57.976 29.630 5.32 0.00 37.65 2.52
1823 2082 1.335415 TGTGTTTGTGTGTGTGTGTGC 60.335 47.619 0.00 0.00 0.00 4.57
1825 2084 0.109964 GTTTGTGTGTGTGTGTGCGT 60.110 50.000 0.00 0.00 0.00 5.24
1827 2086 1.231296 TTGTGTGTGTGTGTGCGTGT 61.231 50.000 0.00 0.00 0.00 4.49
1935 2230 5.994250 AGAGATTTCACTAGCATTAGCCAA 58.006 37.500 0.00 0.00 43.56 4.52
1953 2248 8.641499 TTAGCCAAGAAACAATGTTTTACTTG 57.359 30.769 22.75 22.75 34.85 3.16
1965 2260 7.221259 ACAATGTTTTACTTGTTCCGTTTTAGC 59.779 33.333 0.00 0.00 31.74 3.09
1997 2657 2.028112 TGGTTCTCGTGCTAGCTGAATT 60.028 45.455 17.23 0.00 0.00 2.17
2011 2671 2.853594 GCTGAATTTGTGTGTGTGTGTG 59.146 45.455 0.00 0.00 0.00 3.82
2014 2674 2.937469 ATTTGTGTGTGTGTGTGGTG 57.063 45.000 0.00 0.00 0.00 4.17
2016 2676 0.962855 TTGTGTGTGTGTGTGGTGGG 60.963 55.000 0.00 0.00 0.00 4.61
2018 2678 2.274104 GTGTGTGTGTGGTGGGGT 59.726 61.111 0.00 0.00 0.00 4.95
2155 2815 9.888878 CTTTCTAGTAAAATGCATGGTGATATG 57.111 33.333 0.00 0.00 0.00 1.78
2805 3506 2.880890 ACAGAACTTTGGTGAGCATGTC 59.119 45.455 0.00 0.00 0.00 3.06
2917 3618 4.990426 GCTATGGTTTTGTTCAGTTTGCAT 59.010 37.500 0.00 0.00 0.00 3.96
3135 3838 3.606777 CGTTAAGAAGAGCGAACGATCAA 59.393 43.478 14.40 0.00 45.69 2.57
3572 4279 4.381185 GCAATGCAAGTTCCATCATTCTCA 60.381 41.667 0.00 0.00 0.00 3.27
3573 4280 5.681437 GCAATGCAAGTTCCATCATTCTCAT 60.681 40.000 0.00 0.00 0.00 2.90
3696 4425 2.995939 GTTGATGATGACACTCTTCGCA 59.004 45.455 0.00 0.00 0.00 5.10
3706 4437 1.160329 ACTCTTCGCAAGCGCTTTGT 61.160 50.000 22.51 7.85 39.08 2.83
3719 4450 4.379652 AGCGCTTTGTTGAATTTGGAAAT 58.620 34.783 2.64 0.00 0.00 2.17
3749 4480 7.658982 ACATCAGTAAAGATTATGCGTGATGAT 59.341 33.333 14.22 0.00 41.61 2.45
3858 4589 7.826690 TCCTCTATTTATTTTTGCACCAACTC 58.173 34.615 0.00 0.00 0.00 3.01
3973 4734 4.886489 GCTATTGCTCAAAGGAAAGAGGAT 59.114 41.667 0.00 0.00 32.16 3.24
4173 4934 1.676014 GCAGAATGTGTACCCTTCGCT 60.676 52.381 0.00 0.00 39.31 4.93
4186 4947 2.611473 CCCTTCGCTGCATAGTATCCAG 60.611 54.545 0.00 0.00 0.00 3.86
4197 4958 6.063404 TGCATAGTATCCAGCAAATTCATCA 58.937 36.000 0.00 0.00 33.48 3.07
4220 4981 7.604549 TCAACCACTCGTATGTTATTGACTTA 58.395 34.615 0.00 0.00 0.00 2.24
4331 5099 1.003355 CAACAGGGGACGCATGACT 60.003 57.895 11.39 0.00 0.00 3.41
4720 5616 7.611213 ACGACTTTTAAGGAACAATAGGATG 57.389 36.000 0.00 0.00 0.00 3.51
4863 5911 2.257207 ACAAGGAGTGCTAAGCTACCA 58.743 47.619 0.00 0.00 0.00 3.25
4864 5912 2.028020 ACAAGGAGTGCTAAGCTACCAC 60.028 50.000 0.00 0.00 0.00 4.16
4865 5913 2.234908 CAAGGAGTGCTAAGCTACCACT 59.765 50.000 12.09 12.09 42.10 4.00
4866 5914 2.541466 AGGAGTGCTAAGCTACCACTT 58.459 47.619 13.11 0.00 39.72 3.16
4867 5915 2.498078 AGGAGTGCTAAGCTACCACTTC 59.502 50.000 13.11 11.65 39.72 3.01
4868 5916 2.531206 GAGTGCTAAGCTACCACTTCG 58.469 52.381 13.11 0.00 39.72 3.79
4869 5917 1.000145 GTGCTAAGCTACCACTTCGC 59.000 55.000 0.00 0.00 38.47 4.70
4870 5918 0.606096 TGCTAAGCTACCACTTCGCA 59.394 50.000 0.00 0.00 43.58 5.10
4871 5919 1.000145 GCTAAGCTACCACTTCGCAC 59.000 55.000 0.00 0.00 38.03 5.34
4872 5920 1.404315 GCTAAGCTACCACTTCGCACT 60.404 52.381 0.00 0.00 38.03 4.40
4873 5921 2.931320 GCTAAGCTACCACTTCGCACTT 60.931 50.000 0.00 0.00 38.03 3.16
4874 5922 2.256117 AAGCTACCACTTCGCACTTT 57.744 45.000 0.00 0.00 0.00 2.66
4875 5923 3.396260 AAGCTACCACTTCGCACTTTA 57.604 42.857 0.00 0.00 0.00 1.85
4876 5924 3.611766 AGCTACCACTTCGCACTTTAT 57.388 42.857 0.00 0.00 0.00 1.40
4877 5925 3.939066 AGCTACCACTTCGCACTTTATT 58.061 40.909 0.00 0.00 0.00 1.40
4878 5926 5.080969 AGCTACCACTTCGCACTTTATTA 57.919 39.130 0.00 0.00 0.00 0.98
4879 5927 5.484715 AGCTACCACTTCGCACTTTATTAA 58.515 37.500 0.00 0.00 0.00 1.40
4880 5928 6.113411 AGCTACCACTTCGCACTTTATTAAT 58.887 36.000 0.00 0.00 0.00 1.40
4881 5929 6.598064 AGCTACCACTTCGCACTTTATTAATT 59.402 34.615 0.00 0.00 0.00 1.40
4882 5930 7.767198 AGCTACCACTTCGCACTTTATTAATTA 59.233 33.333 0.00 0.00 0.00 1.40
4883 5931 8.392612 GCTACCACTTCGCACTTTATTAATTAA 58.607 33.333 0.00 0.00 0.00 1.40
4886 5934 9.005777 ACCACTTCGCACTTTATTAATTAAAGA 57.994 29.630 17.16 0.00 46.59 2.52
4887 5935 9.274065 CCACTTCGCACTTTATTAATTAAAGAC 57.726 33.333 17.16 11.08 46.59 3.01
4888 5936 9.820229 CACTTCGCACTTTATTAATTAAAGACA 57.180 29.630 17.16 0.00 46.59 3.41
4904 5952 8.974060 ATTAAAGACAACTTCACTAACAAGGA 57.026 30.769 0.00 0.00 35.05 3.36
4905 5953 6.927294 AAAGACAACTTCACTAACAAGGAG 57.073 37.500 0.00 0.00 35.05 3.69
4906 5954 5.615925 AGACAACTTCACTAACAAGGAGT 57.384 39.130 0.00 0.00 0.00 3.85
4907 5955 5.360591 AGACAACTTCACTAACAAGGAGTG 58.639 41.667 0.00 0.00 44.75 3.51
4908 5956 3.877508 ACAACTTCACTAACAAGGAGTGC 59.122 43.478 0.00 0.00 43.37 4.40
4909 5957 4.130118 CAACTTCACTAACAAGGAGTGCT 58.870 43.478 0.00 0.00 43.37 4.40
4910 5958 5.163343 ACAACTTCACTAACAAGGAGTGCTA 60.163 40.000 0.00 0.00 43.37 3.49
4911 5959 5.546621 ACTTCACTAACAAGGAGTGCTAA 57.453 39.130 0.00 0.00 43.37 3.09
4912 5960 5.542779 ACTTCACTAACAAGGAGTGCTAAG 58.457 41.667 0.00 1.36 43.37 2.18
4913 5961 3.926616 TCACTAACAAGGAGTGCTAAGC 58.073 45.455 0.00 0.00 43.37 3.09
4914 5962 3.578716 TCACTAACAAGGAGTGCTAAGCT 59.421 43.478 0.00 0.00 43.37 3.74
4915 5963 4.770531 TCACTAACAAGGAGTGCTAAGCTA 59.229 41.667 0.00 0.00 43.37 3.32
4916 5964 4.865365 CACTAACAAGGAGTGCTAAGCTAC 59.135 45.833 0.00 0.00 38.06 3.58
4917 5965 3.336138 AACAAGGAGTGCTAAGCTACC 57.664 47.619 0.00 0.00 0.00 3.18
4962 6024 7.454260 ACAGTATTTGACATTTCTTTCCTCC 57.546 36.000 0.00 0.00 0.00 4.30
4965 6027 7.391554 CAGTATTTGACATTTCTTTCCTCCTGA 59.608 37.037 0.00 0.00 0.00 3.86
4967 6029 6.639632 TTTGACATTTCTTTCCTCCTGAAG 57.360 37.500 0.00 0.00 33.63 3.02
4968 6030 5.567037 TGACATTTCTTTCCTCCTGAAGA 57.433 39.130 0.00 0.00 33.63 2.87
4969 6031 5.555017 TGACATTTCTTTCCTCCTGAAGAG 58.445 41.667 0.00 0.00 42.83 2.85
4971 6033 5.946486 ACATTTCTTTCCTCCTGAAGAGTT 58.054 37.500 0.00 0.00 41.47 3.01
5066 6145 9.836864 TTGCACATAGTTTACATTATCTGATCT 57.163 29.630 0.00 0.00 0.00 2.75
5361 6446 7.012989 GCTTCTTTCAAACTAACAAGGACCTAA 59.987 37.037 0.00 0.00 0.00 2.69
5717 6803 6.687081 AGTTTGTGAGTTTTTACCGATTGA 57.313 33.333 0.00 0.00 0.00 2.57
6037 7144 8.322428 GTCTACACTCGTCATATACTCATATCG 58.678 40.741 0.00 0.00 0.00 2.92
6084 7191 4.890158 TCATCTGAAGTCCAAGCTGTTA 57.110 40.909 0.00 0.00 0.00 2.41
6085 7192 4.569943 TCATCTGAAGTCCAAGCTGTTAC 58.430 43.478 0.00 0.00 0.00 2.50
6086 7193 4.284490 TCATCTGAAGTCCAAGCTGTTACT 59.716 41.667 0.00 0.00 0.00 2.24
6087 7194 5.480422 TCATCTGAAGTCCAAGCTGTTACTA 59.520 40.000 0.00 0.00 0.00 1.82
6088 7195 5.392767 TCTGAAGTCCAAGCTGTTACTAG 57.607 43.478 0.00 0.00 0.00 2.57
6089 7196 5.077564 TCTGAAGTCCAAGCTGTTACTAGA 58.922 41.667 0.00 0.00 0.00 2.43
6090 7197 5.717178 TCTGAAGTCCAAGCTGTTACTAGAT 59.283 40.000 0.00 0.00 0.00 1.98
6091 7198 5.724328 TGAAGTCCAAGCTGTTACTAGATG 58.276 41.667 0.00 0.00 0.00 2.90
6093 7200 5.078411 AGTCCAAGCTGTTACTAGATGTG 57.922 43.478 0.00 0.00 0.00 3.21
6112 7231 8.853077 AGATGTGTATTTCTGATTTTGTCTCA 57.147 30.769 0.00 0.00 0.00 3.27
6193 7312 2.299326 ACTACTAGTGGACCCGTTGT 57.701 50.000 13.86 0.00 0.00 3.32
6202 7321 1.288752 GACCCGTTGTGCCAAATGG 59.711 57.895 0.00 0.00 36.18 3.16
6221 7340 1.681793 GGCGTAGAGACCTGCTGATTA 59.318 52.381 0.00 0.00 0.00 1.75
6230 7349 4.446371 AGACCTGCTGATTACATGTTAGC 58.554 43.478 2.30 10.12 35.06 3.09
6361 7489 7.875327 ACATAATTAAATTTGACTAGCCCGT 57.125 32.000 0.00 0.00 0.00 5.28
6362 7490 7.703328 ACATAATTAAATTTGACTAGCCCGTG 58.297 34.615 0.00 0.00 0.00 4.94
6363 7491 4.632538 ATTAAATTTGACTAGCCCGTGC 57.367 40.909 0.00 0.00 37.95 5.34
6364 7492 0.802494 AAATTTGACTAGCCCGTGCG 59.198 50.000 0.00 0.00 44.33 5.34
6365 7493 0.321298 AATTTGACTAGCCCGTGCGT 60.321 50.000 0.00 0.00 44.33 5.24
6366 7494 0.321298 ATTTGACTAGCCCGTGCGTT 60.321 50.000 0.00 0.00 44.33 4.84
6367 7495 1.225376 TTTGACTAGCCCGTGCGTTG 61.225 55.000 0.00 0.00 44.33 4.10
6368 7496 3.488090 GACTAGCCCGTGCGTTGC 61.488 66.667 0.00 0.00 44.33 4.17
6369 7497 4.308458 ACTAGCCCGTGCGTTGCA 62.308 61.111 0.00 0.00 44.33 4.08
6370 7498 3.047280 CTAGCCCGTGCGTTGCAA 61.047 61.111 0.00 0.00 41.47 4.08
6371 7499 3.308878 CTAGCCCGTGCGTTGCAAC 62.309 63.158 19.89 19.89 41.47 4.17
6385 7513 4.752661 GTTGCAACGAGGGTGTAATAAA 57.247 40.909 14.90 0.00 0.00 1.40
6386 7514 5.305139 GTTGCAACGAGGGTGTAATAAAT 57.695 39.130 14.90 0.00 0.00 1.40
6387 7515 6.425577 GTTGCAACGAGGGTGTAATAAATA 57.574 37.500 14.90 0.00 0.00 1.40
6388 7516 7.023197 GTTGCAACGAGGGTGTAATAAATAT 57.977 36.000 14.90 0.00 0.00 1.28
6389 7517 7.477494 GTTGCAACGAGGGTGTAATAAATATT 58.523 34.615 14.90 0.00 0.00 1.28
6390 7518 7.633193 TGCAACGAGGGTGTAATAAATATTT 57.367 32.000 5.89 5.89 0.00 1.40
6391 7519 8.057536 TGCAACGAGGGTGTAATAAATATTTT 57.942 30.769 5.91 0.00 0.00 1.82
6392 7520 9.175312 TGCAACGAGGGTGTAATAAATATTTTA 57.825 29.630 5.91 0.00 0.00 1.52
6393 7521 9.442033 GCAACGAGGGTGTAATAAATATTTTAC 57.558 33.333 5.91 4.71 0.00 2.01
6418 7546 9.630098 ACTGATTCAACATCAATTGTATCAAAC 57.370 29.630 5.13 0.00 42.33 2.93
6419 7547 9.628746 CTGATTCAACATCAATTGTATCAAACA 57.371 29.630 5.13 0.00 42.33 2.83
6427 7555 9.896645 ACATCAATTGTATCAAACATACTCTCT 57.103 29.630 5.13 0.00 38.10 3.10
6429 7557 8.948631 TCAATTGTATCAAACATACTCTCTCC 57.051 34.615 5.13 0.00 38.10 3.71
6430 7558 7.706607 TCAATTGTATCAAACATACTCTCTCCG 59.293 37.037 5.13 0.00 38.10 4.63
6431 7559 6.525578 TTGTATCAAACATACTCTCTCCGT 57.474 37.500 0.00 0.00 38.10 4.69
6432 7560 6.132791 TGTATCAAACATACTCTCTCCGTC 57.867 41.667 0.00 0.00 31.43 4.79
6433 7561 4.657436 ATCAAACATACTCTCTCCGTCC 57.343 45.455 0.00 0.00 0.00 4.79
6434 7562 3.698289 TCAAACATACTCTCTCCGTCCT 58.302 45.455 0.00 0.00 0.00 3.85
6435 7563 3.444034 TCAAACATACTCTCTCCGTCCTG 59.556 47.826 0.00 0.00 0.00 3.86
6436 7564 3.367646 AACATACTCTCTCCGTCCTGA 57.632 47.619 0.00 0.00 0.00 3.86
6437 7565 3.367646 ACATACTCTCTCCGTCCTGAA 57.632 47.619 0.00 0.00 0.00 3.02
6438 7566 3.698289 ACATACTCTCTCCGTCCTGAAA 58.302 45.455 0.00 0.00 0.00 2.69
6439 7567 4.282496 ACATACTCTCTCCGTCCTGAAAT 58.718 43.478 0.00 0.00 0.00 2.17
6440 7568 5.446860 ACATACTCTCTCCGTCCTGAAATA 58.553 41.667 0.00 0.00 0.00 1.40
6441 7569 5.299782 ACATACTCTCTCCGTCCTGAAATAC 59.700 44.000 0.00 0.00 0.00 1.89
6442 7570 3.970842 ACTCTCTCCGTCCTGAAATACT 58.029 45.455 0.00 0.00 0.00 2.12
6443 7571 4.345854 ACTCTCTCCGTCCTGAAATACTT 58.654 43.478 0.00 0.00 0.00 2.24
6444 7572 4.158764 ACTCTCTCCGTCCTGAAATACTTG 59.841 45.833 0.00 0.00 0.00 3.16
6445 7573 4.087182 TCTCTCCGTCCTGAAATACTTGT 58.913 43.478 0.00 0.00 0.00 3.16
6446 7574 5.258841 TCTCTCCGTCCTGAAATACTTGTA 58.741 41.667 0.00 0.00 0.00 2.41
6447 7575 5.357314 TCTCTCCGTCCTGAAATACTTGTAG 59.643 44.000 0.00 0.00 0.00 2.74
6448 7576 5.258841 TCTCCGTCCTGAAATACTTGTAGA 58.741 41.667 0.00 0.00 0.00 2.59
6449 7577 5.125097 TCTCCGTCCTGAAATACTTGTAGAC 59.875 44.000 0.00 0.00 0.00 2.59
6450 7578 4.103357 CCGTCCTGAAATACTTGTAGACG 58.897 47.826 0.00 0.00 43.94 4.18
6451 7579 4.380233 CCGTCCTGAAATACTTGTAGACGT 60.380 45.833 8.21 0.00 43.08 4.34
6452 7580 5.163723 CCGTCCTGAAATACTTGTAGACGTA 60.164 44.000 8.21 0.00 43.08 3.57
6453 7581 6.459298 CCGTCCTGAAATACTTGTAGACGTAT 60.459 42.308 8.21 0.00 43.08 3.06
6454 7582 6.971184 CGTCCTGAAATACTTGTAGACGTATT 59.029 38.462 0.00 0.00 40.56 1.89
6455 7583 7.487189 CGTCCTGAAATACTTGTAGACGTATTT 59.513 37.037 12.52 12.52 44.52 1.40
6456 7584 9.148104 GTCCTGAAATACTTGTAGACGTATTTT 57.852 33.333 13.51 1.65 42.91 1.82
6469 7597 9.642327 TGTAGACGTATTTTAGTTTTAGATGCA 57.358 29.630 0.00 0.00 0.00 3.96
6472 7600 8.827677 AGACGTATTTTAGTTTTAGATGCATCC 58.172 33.333 23.06 7.42 0.00 3.51
6473 7601 8.500753 ACGTATTTTAGTTTTAGATGCATCCA 57.499 30.769 23.06 6.95 0.00 3.41
6474 7602 9.120538 ACGTATTTTAGTTTTAGATGCATCCAT 57.879 29.630 23.06 8.39 0.00 3.41
6475 7603 9.950680 CGTATTTTAGTTTTAGATGCATCCATT 57.049 29.630 23.06 7.62 0.00 3.16
6504 7632 7.922505 TTCATTTATGTGACAAGTTTTTCCG 57.077 32.000 0.00 0.00 0.00 4.30
6505 7633 6.442952 TCATTTATGTGACAAGTTTTTCCGG 58.557 36.000 0.00 0.00 0.00 5.14
6506 7634 6.263392 TCATTTATGTGACAAGTTTTTCCGGA 59.737 34.615 0.00 0.00 0.00 5.14
6507 7635 3.982576 ATGTGACAAGTTTTTCCGGAC 57.017 42.857 1.83 0.00 0.00 4.79
6508 7636 1.666700 TGTGACAAGTTTTTCCGGACG 59.333 47.619 1.83 0.00 0.00 4.79
6509 7637 1.003223 GTGACAAGTTTTTCCGGACGG 60.003 52.381 1.83 3.96 0.00 4.79
6510 7638 1.134461 TGACAAGTTTTTCCGGACGGA 60.134 47.619 1.83 9.76 43.52 4.69
6511 7639 1.529865 GACAAGTTTTTCCGGACGGAG 59.470 52.381 13.64 3.15 46.06 4.63
6512 7640 0.872388 CAAGTTTTTCCGGACGGAGG 59.128 55.000 13.64 0.00 46.06 4.30
6513 7641 0.250597 AAGTTTTTCCGGACGGAGGG 60.251 55.000 13.64 0.00 46.06 4.30
6514 7642 1.123246 AGTTTTTCCGGACGGAGGGA 61.123 55.000 13.64 1.83 46.06 4.20
6515 7643 0.672711 GTTTTTCCGGACGGAGGGAG 60.673 60.000 13.64 0.00 46.06 4.30
6516 7644 1.123246 TTTTTCCGGACGGAGGGAGT 61.123 55.000 13.64 0.00 46.06 3.85
6517 7645 0.251742 TTTTCCGGACGGAGGGAGTA 60.252 55.000 13.64 0.00 46.06 2.59
6518 7646 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
6519 7647 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
6520 7648 0.109342 TCCGGACGGAGGGAGTATAC 59.891 60.000 9.76 0.00 39.76 1.47
6521 7649 0.179009 CCGGACGGAGGGAGTATACA 60.179 60.000 4.40 0.00 37.50 2.29
6522 7650 1.547223 CCGGACGGAGGGAGTATACAT 60.547 57.143 4.40 0.00 37.50 2.29
6523 7651 2.236766 CGGACGGAGGGAGTATACATT 58.763 52.381 5.50 0.00 0.00 2.71
6524 7652 2.626743 CGGACGGAGGGAGTATACATTT 59.373 50.000 5.50 0.00 0.00 2.32
6525 7653 3.822735 CGGACGGAGGGAGTATACATTTA 59.177 47.826 5.50 0.00 0.00 1.40
6526 7654 4.082895 CGGACGGAGGGAGTATACATTTAG 60.083 50.000 5.50 0.00 0.00 1.85
6527 7655 4.321824 GGACGGAGGGAGTATACATTTAGC 60.322 50.000 5.50 0.00 0.00 3.09
6528 7656 4.220724 ACGGAGGGAGTATACATTTAGCA 58.779 43.478 5.50 0.00 0.00 3.49
6529 7657 4.838986 ACGGAGGGAGTATACATTTAGCAT 59.161 41.667 5.50 0.00 0.00 3.79
6530 7658 5.047235 ACGGAGGGAGTATACATTTAGCATC 60.047 44.000 5.50 0.00 0.00 3.91
6531 7659 5.624738 CGGAGGGAGTATACATTTAGCATCC 60.625 48.000 5.50 0.42 0.00 3.51
6532 7660 5.485708 GGAGGGAGTATACATTTAGCATCCT 59.514 44.000 5.50 0.00 0.00 3.24
6533 7661 6.351456 GGAGGGAGTATACATTTAGCATCCTC 60.351 46.154 5.50 0.00 36.21 3.71
6534 7662 5.186021 AGGGAGTATACATTTAGCATCCTCG 59.814 44.000 5.50 0.00 0.00 4.63
6535 7663 5.047235 GGGAGTATACATTTAGCATCCTCGT 60.047 44.000 5.50 0.00 0.00 4.18
6536 7664 6.152323 GGGAGTATACATTTAGCATCCTCGTA 59.848 42.308 5.50 0.00 0.00 3.43
6537 7665 7.147880 GGGAGTATACATTTAGCATCCTCGTAT 60.148 40.741 5.50 0.00 0.00 3.06
6538 7666 8.251721 GGAGTATACATTTAGCATCCTCGTATT 58.748 37.037 5.50 0.00 0.00 1.89
6539 7667 9.640963 GAGTATACATTTAGCATCCTCGTATTT 57.359 33.333 5.50 0.00 0.00 1.40
6540 7668 9.998106 AGTATACATTTAGCATCCTCGTATTTT 57.002 29.630 5.50 0.00 0.00 1.82
6542 7670 6.619801 ACATTTAGCATCCTCGTATTTTCC 57.380 37.500 0.00 0.00 0.00 3.13
6543 7671 6.357367 ACATTTAGCATCCTCGTATTTTCCT 58.643 36.000 0.00 0.00 0.00 3.36
6544 7672 6.828785 ACATTTAGCATCCTCGTATTTTCCTT 59.171 34.615 0.00 0.00 0.00 3.36
6545 7673 6.920569 TTTAGCATCCTCGTATTTTCCTTC 57.079 37.500 0.00 0.00 0.00 3.46
6546 7674 4.487714 AGCATCCTCGTATTTTCCTTCA 57.512 40.909 0.00 0.00 0.00 3.02
6547 7675 5.041191 AGCATCCTCGTATTTTCCTTCAT 57.959 39.130 0.00 0.00 0.00 2.57
6548 7676 5.440610 AGCATCCTCGTATTTTCCTTCATT 58.559 37.500 0.00 0.00 0.00 2.57
6549 7677 5.529060 AGCATCCTCGTATTTTCCTTCATTC 59.471 40.000 0.00 0.00 0.00 2.67
6550 7678 5.296780 GCATCCTCGTATTTTCCTTCATTCA 59.703 40.000 0.00 0.00 0.00 2.57
6551 7679 6.016777 GCATCCTCGTATTTTCCTTCATTCAT 60.017 38.462 0.00 0.00 0.00 2.57
6552 7680 7.579726 CATCCTCGTATTTTCCTTCATTCATC 58.420 38.462 0.00 0.00 0.00 2.92
6553 7681 6.055588 TCCTCGTATTTTCCTTCATTCATCC 58.944 40.000 0.00 0.00 0.00 3.51
6554 7682 5.822519 CCTCGTATTTTCCTTCATTCATCCA 59.177 40.000 0.00 0.00 0.00 3.41
6555 7683 6.238484 CCTCGTATTTTCCTTCATTCATCCAC 60.238 42.308 0.00 0.00 0.00 4.02
6556 7684 6.414732 TCGTATTTTCCTTCATTCATCCACT 58.585 36.000 0.00 0.00 0.00 4.00
6557 7685 7.561251 TCGTATTTTCCTTCATTCATCCACTA 58.439 34.615 0.00 0.00 0.00 2.74
6558 7686 8.210946 TCGTATTTTCCTTCATTCATCCACTAT 58.789 33.333 0.00 0.00 0.00 2.12
6559 7687 8.499162 CGTATTTTCCTTCATTCATCCACTATC 58.501 37.037 0.00 0.00 0.00 2.08
6560 7688 9.566432 GTATTTTCCTTCATTCATCCACTATCT 57.434 33.333 0.00 0.00 0.00 1.98
6561 7689 8.688747 ATTTTCCTTCATTCATCCACTATCTC 57.311 34.615 0.00 0.00 0.00 2.75
6562 7690 5.459536 TCCTTCATTCATCCACTATCTCG 57.540 43.478 0.00 0.00 0.00 4.04
6563 7691 5.140454 TCCTTCATTCATCCACTATCTCGA 58.860 41.667 0.00 0.00 0.00 4.04
6564 7692 5.010112 TCCTTCATTCATCCACTATCTCGAC 59.990 44.000 0.00 0.00 0.00 4.20
6565 7693 4.855715 TCATTCATCCACTATCTCGACC 57.144 45.455 0.00 0.00 0.00 4.79
6566 7694 4.474394 TCATTCATCCACTATCTCGACCT 58.526 43.478 0.00 0.00 0.00 3.85
6567 7695 4.895889 TCATTCATCCACTATCTCGACCTT 59.104 41.667 0.00 0.00 0.00 3.50
6568 7696 5.363868 TCATTCATCCACTATCTCGACCTTT 59.636 40.000 0.00 0.00 0.00 3.11
6569 7697 4.920640 TCATCCACTATCTCGACCTTTC 57.079 45.455 0.00 0.00 0.00 2.62
6570 7698 3.637229 TCATCCACTATCTCGACCTTTCC 59.363 47.826 0.00 0.00 0.00 3.13
6571 7699 3.095912 TCCACTATCTCGACCTTTCCA 57.904 47.619 0.00 0.00 0.00 3.53
6572 7700 3.437213 TCCACTATCTCGACCTTTCCAA 58.563 45.455 0.00 0.00 0.00 3.53
6573 7701 4.030913 TCCACTATCTCGACCTTTCCAAT 58.969 43.478 0.00 0.00 0.00 3.16
6574 7702 4.099573 TCCACTATCTCGACCTTTCCAATC 59.900 45.833 0.00 0.00 0.00 2.67
6575 7703 4.372656 CACTATCTCGACCTTTCCAATCC 58.627 47.826 0.00 0.00 0.00 3.01
6576 7704 4.030913 ACTATCTCGACCTTTCCAATCCA 58.969 43.478 0.00 0.00 0.00 3.41
6577 7705 4.469945 ACTATCTCGACCTTTCCAATCCAA 59.530 41.667 0.00 0.00 0.00 3.53
6578 7706 3.780804 TCTCGACCTTTCCAATCCAAA 57.219 42.857 0.00 0.00 0.00 3.28
6579 7707 3.408634 TCTCGACCTTTCCAATCCAAAC 58.591 45.455 0.00 0.00 0.00 2.93
6580 7708 3.146066 CTCGACCTTTCCAATCCAAACA 58.854 45.455 0.00 0.00 0.00 2.83
6581 7709 2.882137 TCGACCTTTCCAATCCAAACAC 59.118 45.455 0.00 0.00 0.00 3.32
6582 7710 2.350388 CGACCTTTCCAATCCAAACACG 60.350 50.000 0.00 0.00 0.00 4.49
6583 7711 2.621526 GACCTTTCCAATCCAAACACGT 59.378 45.455 0.00 0.00 0.00 4.49
6584 7712 3.028130 ACCTTTCCAATCCAAACACGTT 58.972 40.909 0.00 0.00 0.00 3.99
6585 7713 3.449377 ACCTTTCCAATCCAAACACGTTT 59.551 39.130 0.00 0.00 0.00 3.60
6586 7714 4.081365 ACCTTTCCAATCCAAACACGTTTT 60.081 37.500 0.00 0.00 0.00 2.43
6587 7715 4.269844 CCTTTCCAATCCAAACACGTTTTG 59.730 41.667 13.08 13.08 0.00 2.44
6588 7716 4.720649 TTCCAATCCAAACACGTTTTGA 57.279 36.364 18.57 0.00 0.00 2.69
6589 7717 4.035278 TCCAATCCAAACACGTTTTGAC 57.965 40.909 18.57 0.00 28.88 3.18
6590 7718 3.120041 CCAATCCAAACACGTTTTGACC 58.880 45.455 18.57 0.00 28.88 4.02
6591 7719 3.181480 CCAATCCAAACACGTTTTGACCT 60.181 43.478 18.57 5.93 28.88 3.85
6592 7720 4.036971 CCAATCCAAACACGTTTTGACCTA 59.963 41.667 18.57 7.09 28.88 3.08
6593 7721 5.278758 CCAATCCAAACACGTTTTGACCTAT 60.279 40.000 18.57 8.43 28.88 2.57
6594 7722 4.822036 TCCAAACACGTTTTGACCTATG 57.178 40.909 18.57 1.04 0.00 2.23
6595 7723 4.200874 TCCAAACACGTTTTGACCTATGT 58.799 39.130 18.57 0.00 0.00 2.29
6596 7724 4.641094 TCCAAACACGTTTTGACCTATGTT 59.359 37.500 18.57 0.98 31.82 2.71
6597 7725 5.125739 TCCAAACACGTTTTGACCTATGTTT 59.874 36.000 18.57 6.30 40.04 2.83
6598 7726 5.808030 CCAAACACGTTTTGACCTATGTTTT 59.192 36.000 18.57 0.00 37.99 2.43
6599 7727 6.020201 CCAAACACGTTTTGACCTATGTTTTC 60.020 38.462 18.57 0.00 37.99 2.29
6600 7728 6.445357 AACACGTTTTGACCTATGTTTTCT 57.555 33.333 0.00 0.00 0.00 2.52
6601 7729 7.556733 AACACGTTTTGACCTATGTTTTCTA 57.443 32.000 0.00 0.00 0.00 2.10
6602 7730 6.951643 ACACGTTTTGACCTATGTTTTCTAC 58.048 36.000 0.00 0.00 0.00 2.59
6603 7731 6.764560 ACACGTTTTGACCTATGTTTTCTACT 59.235 34.615 0.00 0.00 0.00 2.57
6604 7732 7.281549 ACACGTTTTGACCTATGTTTTCTACTT 59.718 33.333 0.00 0.00 0.00 2.24
6605 7733 8.126700 CACGTTTTGACCTATGTTTTCTACTTT 58.873 33.333 0.00 0.00 0.00 2.66
6606 7734 8.680001 ACGTTTTGACCTATGTTTTCTACTTTT 58.320 29.630 0.00 0.00 0.00 2.27
6607 7735 9.511144 CGTTTTGACCTATGTTTTCTACTTTTT 57.489 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
439 440 1.229984 CCACCTCCTCCTTTCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
453 454 3.491598 CTCCACCACCACCACCACC 62.492 68.421 0.00 0.00 0.00 4.61
454 455 2.113139 CTCCACCACCACCACCAC 59.887 66.667 0.00 0.00 0.00 4.16
562 572 0.033601 AAATTACCGGCCTGCCATCA 60.034 50.000 0.00 0.00 35.37 3.07
637 647 2.742372 CTGGCTGTTCGGTTCGGG 60.742 66.667 0.00 0.00 0.00 5.14
702 712 3.703127 AGTTTCCTCGCCCGTCCC 61.703 66.667 0.00 0.00 0.00 4.46
721 732 0.542938 CTCCTGAGTCCTGACCCACA 60.543 60.000 0.00 0.00 0.00 4.17
723 734 1.079256 CCTCCTGAGTCCTGACCCA 59.921 63.158 0.00 0.00 0.00 4.51
869 895 0.179132 GGGTCGGTTTTTGTTTGCGT 60.179 50.000 0.00 0.00 0.00 5.24
870 896 0.872451 GGGGTCGGTTTTTGTTTGCG 60.872 55.000 0.00 0.00 0.00 4.85
1140 1193 2.806856 CTCCTGCGCGTTCTCATGC 61.807 63.158 8.43 0.00 0.00 4.06
1206 1259 4.373116 TTGTCGCGGCAGACCCTC 62.373 66.667 15.27 0.00 40.26 4.30
1242 1295 7.149973 AGAAATAATTTACGTAGCCATAGCGA 58.850 34.615 0.00 0.00 46.67 4.93
1245 1298 7.876068 TGGGAGAAATAATTTACGTAGCCATAG 59.124 37.037 0.00 0.00 0.00 2.23
1263 1316 1.065709 GTACCATCGGCTTGGGAGAAA 60.066 52.381 8.05 0.00 41.35 2.52
1365 1449 5.662657 CCTATGGAGTGGATTGGGAAAAATT 59.337 40.000 0.00 0.00 0.00 1.82
1374 1458 3.496870 GCCTAACCCTATGGAGTGGATTG 60.497 52.174 0.00 0.00 34.81 2.67
1375 1459 2.711547 GCCTAACCCTATGGAGTGGATT 59.288 50.000 0.00 0.00 34.81 3.01
1376 1460 2.089925 AGCCTAACCCTATGGAGTGGAT 60.090 50.000 0.00 0.00 34.81 3.41
1377 1461 1.294068 AGCCTAACCCTATGGAGTGGA 59.706 52.381 0.00 0.00 34.81 4.02
1378 1462 1.694696 GAGCCTAACCCTATGGAGTGG 59.305 57.143 0.00 0.00 34.81 4.00
1379 1463 1.341531 CGAGCCTAACCCTATGGAGTG 59.658 57.143 0.00 0.00 34.81 3.51
1380 1464 1.217183 TCGAGCCTAACCCTATGGAGT 59.783 52.381 0.00 0.00 34.81 3.85
1381 1465 1.996798 TCGAGCCTAACCCTATGGAG 58.003 55.000 0.00 0.00 34.81 3.86
1382 1466 2.696526 ATCGAGCCTAACCCTATGGA 57.303 50.000 0.00 0.00 34.81 3.41
1383 1467 2.166664 GCTATCGAGCCTAACCCTATGG 59.833 54.545 0.00 0.00 43.49 2.74
1384 1468 2.159366 CGCTATCGAGCCTAACCCTATG 60.159 54.545 0.00 0.00 46.86 2.23
1385 1469 2.093106 CGCTATCGAGCCTAACCCTAT 58.907 52.381 0.00 0.00 46.86 2.57
1386 1470 1.072806 TCGCTATCGAGCCTAACCCTA 59.927 52.381 0.00 0.00 46.86 3.53
1387 1471 0.178998 TCGCTATCGAGCCTAACCCT 60.179 55.000 0.00 0.00 46.86 4.34
1388 1472 2.338381 TCGCTATCGAGCCTAACCC 58.662 57.895 0.00 0.00 46.86 4.11
1398 1482 2.240493 AACTCCCCAAATCGCTATCG 57.760 50.000 0.00 0.00 0.00 2.92
1427 1511 7.417612 GCAATCGATAAATAAAAGCAGGAAGA 58.582 34.615 0.00 0.00 0.00 2.87
1507 1591 6.586868 TGAAACAATGCAAAGATGTTTGAC 57.413 33.333 18.79 10.39 45.22 3.18
1567 1651 3.181501 GCATAGCTTGTTCAAACGCCATA 60.182 43.478 0.00 0.00 0.00 2.74
1616 1701 1.067364 CACATCAAAGTGGCAGCAACA 59.933 47.619 1.78 0.00 35.88 3.33
1664 1760 2.291282 CCAAACTACACTATGCCCCCAA 60.291 50.000 0.00 0.00 0.00 4.12
1665 1761 1.283613 CCAAACTACACTATGCCCCCA 59.716 52.381 0.00 0.00 0.00 4.96
1676 1772 3.006112 TGCTGAACAACCCAAACTACA 57.994 42.857 0.00 0.00 0.00 2.74
1726 1822 4.191544 AGCTGAAGATTAAGCAACGCATA 58.808 39.130 4.75 0.00 42.06 3.14
1780 2036 9.079833 CACAATCCATACATAGCAAAGAAAAAG 57.920 33.333 0.00 0.00 0.00 2.27
1783 2039 7.701539 ACACAATCCATACATAGCAAAGAAA 57.298 32.000 0.00 0.00 0.00 2.52
1784 2040 7.701539 AACACAATCCATACATAGCAAAGAA 57.298 32.000 0.00 0.00 0.00 2.52
1785 2041 7.176515 ACAAACACAATCCATACATAGCAAAGA 59.823 33.333 0.00 0.00 0.00 2.52
1823 2082 9.521503 TTTTTAATGATCTCTCTCTATCACACG 57.478 33.333 0.00 0.00 35.06 4.49
1935 2230 6.859017 ACGGAACAAGTAAAACATTGTTTCT 58.141 32.000 14.80 6.47 46.67 2.52
1953 2248 3.554259 CCTCAAAGGCTAAAACGGAAC 57.446 47.619 0.00 0.00 0.00 3.62
1965 2260 1.160137 CGAGAACCAAGCCTCAAAGG 58.840 55.000 0.00 0.00 38.80 3.11
1983 2643 2.224079 ACACACAAATTCAGCTAGCACG 59.776 45.455 18.83 7.72 0.00 5.34
1997 2657 0.962855 CCCACCACACACACACACAA 60.963 55.000 0.00 0.00 0.00 3.33
2026 2686 0.996762 TCTCTCTCCCTCCCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
2103 2763 6.876257 ACCACTATTTCAAAACTTGCACAAAA 59.124 30.769 0.00 0.00 0.00 2.44
2155 2815 3.988379 TCTTTTGTTCCACATCACAGC 57.012 42.857 0.00 0.00 0.00 4.40
2334 2995 8.946085 GTAGTCAACTTATTCATTCACATTCCA 58.054 33.333 0.00 0.00 0.00 3.53
2493 3184 5.508825 GCATAGGGTCATTTGTTGAACAACA 60.509 40.000 10.72 15.04 44.43 3.33
2917 3618 4.742201 GTCTGCCGGCTCTTGCGA 62.742 66.667 29.70 11.17 40.82 5.10
3135 3838 9.162764 GTTAGTGTACTTGTCATCATTATTGGT 57.837 33.333 0.00 0.00 0.00 3.67
3183 3886 4.322080 TGAGTTCTTCTGTCATGTCGTT 57.678 40.909 0.00 0.00 0.00 3.85
3261 3964 1.932338 ACCCTTGGATGTCCCATCATT 59.068 47.619 6.56 0.00 46.10 2.57
3508 4215 3.260884 TCCGCTTTTCCTCATGTAAGAGT 59.739 43.478 0.00 0.00 33.75 3.24
3597 4326 9.467258 ACACATTTGTAAATGAAAGATGTGAAG 57.533 29.630 20.68 0.00 46.72 3.02
3696 4425 3.451141 TCCAAATTCAACAAAGCGCTT 57.549 38.095 18.98 18.98 0.00 4.68
3719 4450 9.974980 TCACGCATAATCTTTACTGATGTAATA 57.025 29.630 0.00 0.00 38.31 0.98
3749 4480 3.882888 CGAATCCTTTGCTAATGCCCTTA 59.117 43.478 0.00 0.00 38.71 2.69
3863 4594 9.463443 CTCAGTATCGTGATGTCAATGTATAAA 57.537 33.333 0.00 0.00 0.00 1.40
3973 4734 2.187958 TGCTCCAGCCTAGCTTTTCTA 58.812 47.619 0.00 0.00 40.73 2.10
4173 4934 6.063404 TGATGAATTTGCTGGATACTATGCA 58.937 36.000 0.00 0.00 36.54 3.96
4186 4947 3.559238 ACGAGTGGTTGATGAATTTGC 57.441 42.857 0.00 0.00 0.00 3.68
4197 4958 9.095065 GAATAAGTCAATAACATACGAGTGGTT 57.905 33.333 0.00 0.00 0.00 3.67
4534 5339 1.204941 GTGGTCAGAGTAATCCGTGCT 59.795 52.381 0.00 0.00 0.00 4.40
4761 5659 3.310435 GGGGGAGGAGGAGTAACTAAAGA 60.310 52.174 0.00 0.00 0.00 2.52
4878 5926 9.403583 TCCTTGTTAGTGAAGTTGTCTTTAATT 57.596 29.630 0.00 0.00 33.64 1.40
4879 5927 8.974060 TCCTTGTTAGTGAAGTTGTCTTTAAT 57.026 30.769 0.00 0.00 33.64 1.40
4880 5928 8.044908 ACTCCTTGTTAGTGAAGTTGTCTTTAA 58.955 33.333 0.00 0.00 33.64 1.52
4881 5929 7.494625 CACTCCTTGTTAGTGAAGTTGTCTTTA 59.505 37.037 0.00 0.00 45.89 1.85
4882 5930 6.316390 CACTCCTTGTTAGTGAAGTTGTCTTT 59.684 38.462 0.00 0.00 45.89 2.52
4883 5931 5.817816 CACTCCTTGTTAGTGAAGTTGTCTT 59.182 40.000 0.00 0.00 45.89 3.01
4884 5932 5.360591 CACTCCTTGTTAGTGAAGTTGTCT 58.639 41.667 0.00 0.00 45.89 3.41
4885 5933 4.024809 GCACTCCTTGTTAGTGAAGTTGTC 60.025 45.833 7.39 0.00 45.89 3.18
4886 5934 3.877508 GCACTCCTTGTTAGTGAAGTTGT 59.122 43.478 7.39 0.00 45.89 3.32
4887 5935 4.130118 AGCACTCCTTGTTAGTGAAGTTG 58.870 43.478 7.39 0.00 45.89 3.16
4888 5936 4.423625 AGCACTCCTTGTTAGTGAAGTT 57.576 40.909 7.39 0.00 45.89 2.66
4889 5937 5.542779 CTTAGCACTCCTTGTTAGTGAAGT 58.457 41.667 7.39 0.00 45.89 3.01
4890 5938 4.390297 GCTTAGCACTCCTTGTTAGTGAAG 59.610 45.833 7.39 4.36 45.89 3.02
4891 5939 4.040461 AGCTTAGCACTCCTTGTTAGTGAA 59.960 41.667 7.07 0.00 45.89 3.18
4892 5940 3.578716 AGCTTAGCACTCCTTGTTAGTGA 59.421 43.478 7.07 0.00 45.89 3.41
4893 5941 3.931578 AGCTTAGCACTCCTTGTTAGTG 58.068 45.455 7.07 0.00 45.80 2.74
4894 5942 4.081586 GGTAGCTTAGCACTCCTTGTTAGT 60.082 45.833 7.07 0.00 0.00 2.24
4895 5943 4.081642 TGGTAGCTTAGCACTCCTTGTTAG 60.082 45.833 7.07 0.00 0.00 2.34
4896 5944 3.835978 TGGTAGCTTAGCACTCCTTGTTA 59.164 43.478 7.07 0.00 0.00 2.41
4897 5945 2.637872 TGGTAGCTTAGCACTCCTTGTT 59.362 45.455 7.07 0.00 0.00 2.83
4898 5946 2.257207 TGGTAGCTTAGCACTCCTTGT 58.743 47.619 7.07 0.00 0.00 3.16
4958 6020 4.278975 AGCAACTTAACTCTTCAGGAGG 57.721 45.455 0.00 0.00 45.83 4.30
4959 6021 5.784177 TGTAGCAACTTAACTCTTCAGGAG 58.216 41.667 0.00 0.00 46.87 3.69
4960 6022 5.801531 TGTAGCAACTTAACTCTTCAGGA 57.198 39.130 0.00 0.00 0.00 3.86
4961 6023 6.402222 AGATGTAGCAACTTAACTCTTCAGG 58.598 40.000 0.00 0.00 0.00 3.86
4962 6024 7.897575 AAGATGTAGCAACTTAACTCTTCAG 57.102 36.000 0.00 0.00 0.00 3.02
4965 6027 7.376615 ACGTAAGATGTAGCAACTTAACTCTT 58.623 34.615 0.00 0.00 43.62 2.85
4967 6029 7.445836 CAACGTAAGATGTAGCAACTTAACTC 58.554 38.462 0.00 0.00 43.62 3.01
4968 6030 7.347508 CAACGTAAGATGTAGCAACTTAACT 57.652 36.000 0.00 0.00 43.62 2.24
5385 6470 0.675837 GATCAGGCTGCAGCAGACAA 60.676 55.000 37.63 17.99 42.99 3.18
5547 6632 1.153989 TAGGGCCTCCAGATCCTCG 59.846 63.158 10.74 0.00 34.83 4.63
5985 7090 9.132923 CACCAGGTCTACACTTTAATCTCTATA 57.867 37.037 0.00 0.00 0.00 1.31
5986 7091 7.620094 ACACCAGGTCTACACTTTAATCTCTAT 59.380 37.037 0.00 0.00 0.00 1.98
6050 7157 6.825721 GGACTTCAGATGATCTACATGGTTTT 59.174 38.462 0.00 0.00 39.56 2.43
6084 7191 9.950496 AGACAAAATCAGAAATACACATCTAGT 57.050 29.630 0.00 0.00 0.00 2.57
6086 7193 9.942850 TGAGACAAAATCAGAAATACACATCTA 57.057 29.630 0.00 0.00 0.00 1.98
6087 7194 8.853077 TGAGACAAAATCAGAAATACACATCT 57.147 30.769 0.00 0.00 0.00 2.90
6090 7197 9.500785 TGTATGAGACAAAATCAGAAATACACA 57.499 29.630 0.00 0.00 34.15 3.72
6091 7198 9.979270 CTGTATGAGACAAAATCAGAAATACAC 57.021 33.333 0.00 0.00 37.70 2.90
6112 7231 6.942005 TCAGAACACATCCACAAAATCTGTAT 59.058 34.615 0.00 0.00 36.10 2.29
6202 7321 2.099263 TGTAATCAGCAGGTCTCTACGC 59.901 50.000 0.00 0.00 0.00 4.42
6205 7324 5.939764 AACATGTAATCAGCAGGTCTCTA 57.060 39.130 0.00 0.00 30.15 2.43
6221 7340 6.150976 TGGATTTCTTTTCATCGCTAACATGT 59.849 34.615 0.00 0.00 0.00 3.21
6230 7349 7.145932 ACTAAACCTGGATTTCTTTTCATCG 57.854 36.000 0.00 0.00 0.00 3.84
6353 7481 3.047280 TTGCAACGCACGGGCTAG 61.047 61.111 8.62 0.00 38.71 3.42
6354 7482 3.350612 GTTGCAACGCACGGGCTA 61.351 61.111 14.90 0.84 38.71 3.93
6364 7492 4.752661 TTTATTACACCCTCGTTGCAAC 57.247 40.909 19.89 19.89 0.00 4.17
6365 7493 7.633193 AATATTTATTACACCCTCGTTGCAA 57.367 32.000 0.00 0.00 0.00 4.08
6366 7494 7.633193 AAATATTTATTACACCCTCGTTGCA 57.367 32.000 0.00 0.00 0.00 4.08
6367 7495 9.442033 GTAAAATATTTATTACACCCTCGTTGC 57.558 33.333 0.01 0.00 33.29 4.17
6392 7520 9.630098 GTTTGATACAATTGATGTTGAATCAGT 57.370 29.630 13.59 0.00 43.63 3.41
6393 7521 9.628746 TGTTTGATACAATTGATGTTGAATCAG 57.371 29.630 13.59 0.00 43.63 2.90
6401 7529 9.896645 AGAGAGTATGTTTGATACAATTGATGT 57.103 29.630 13.59 0.00 46.36 3.06
6403 7531 9.553064 GGAGAGAGTATGTTTGATACAATTGAT 57.447 33.333 13.59 1.08 40.89 2.57
6404 7532 7.706607 CGGAGAGAGTATGTTTGATACAATTGA 59.293 37.037 13.59 0.00 40.89 2.57
6405 7533 7.492669 ACGGAGAGAGTATGTTTGATACAATTG 59.507 37.037 3.24 3.24 40.89 2.32
6406 7534 7.556844 ACGGAGAGAGTATGTTTGATACAATT 58.443 34.615 0.00 0.00 40.89 2.32
6407 7535 7.113658 ACGGAGAGAGTATGTTTGATACAAT 57.886 36.000 0.00 0.00 40.89 2.71
6408 7536 6.405508 GGACGGAGAGAGTATGTTTGATACAA 60.406 42.308 0.00 0.00 40.89 2.41
6409 7537 5.067413 GGACGGAGAGAGTATGTTTGATACA 59.933 44.000 0.00 0.00 41.97 2.29
6410 7538 5.299782 AGGACGGAGAGAGTATGTTTGATAC 59.700 44.000 0.00 0.00 0.00 2.24
6411 7539 5.299531 CAGGACGGAGAGAGTATGTTTGATA 59.700 44.000 0.00 0.00 0.00 2.15
6412 7540 4.098654 CAGGACGGAGAGAGTATGTTTGAT 59.901 45.833 0.00 0.00 0.00 2.57
6413 7541 3.444034 CAGGACGGAGAGAGTATGTTTGA 59.556 47.826 0.00 0.00 0.00 2.69
6414 7542 3.444034 TCAGGACGGAGAGAGTATGTTTG 59.556 47.826 0.00 0.00 0.00 2.93
6415 7543 3.698289 TCAGGACGGAGAGAGTATGTTT 58.302 45.455 0.00 0.00 0.00 2.83
6416 7544 3.367646 TCAGGACGGAGAGAGTATGTT 57.632 47.619 0.00 0.00 0.00 2.71
6417 7545 3.367646 TTCAGGACGGAGAGAGTATGT 57.632 47.619 0.00 0.00 0.00 2.29
6418 7546 4.927978 ATTTCAGGACGGAGAGAGTATG 57.072 45.455 0.00 0.00 0.00 2.39
6419 7547 5.697067 AGTATTTCAGGACGGAGAGAGTAT 58.303 41.667 0.00 0.00 0.00 2.12
6420 7548 5.113446 AGTATTTCAGGACGGAGAGAGTA 57.887 43.478 0.00 0.00 0.00 2.59
6421 7549 3.970842 AGTATTTCAGGACGGAGAGAGT 58.029 45.455 0.00 0.00 0.00 3.24
6422 7550 4.158764 ACAAGTATTTCAGGACGGAGAGAG 59.841 45.833 0.00 0.00 0.00 3.20
6423 7551 4.087182 ACAAGTATTTCAGGACGGAGAGA 58.913 43.478 0.00 0.00 0.00 3.10
6424 7552 4.457834 ACAAGTATTTCAGGACGGAGAG 57.542 45.455 0.00 0.00 0.00 3.20
6425 7553 5.125097 GTCTACAAGTATTTCAGGACGGAGA 59.875 44.000 0.00 0.00 0.00 3.71
6426 7554 5.341617 GTCTACAAGTATTTCAGGACGGAG 58.658 45.833 0.00 0.00 0.00 4.63
6427 7555 4.142534 CGTCTACAAGTATTTCAGGACGGA 60.143 45.833 0.00 0.00 40.66 4.69
6428 7556 4.103357 CGTCTACAAGTATTTCAGGACGG 58.897 47.826 0.00 0.00 40.66 4.79
6429 7557 4.730657 ACGTCTACAAGTATTTCAGGACG 58.269 43.478 12.74 12.74 46.70 4.79
6430 7558 8.699283 AAATACGTCTACAAGTATTTCAGGAC 57.301 34.615 0.00 0.00 45.14 3.85
6443 7571 9.642327 TGCATCTAAAACTAAAATACGTCTACA 57.358 29.630 0.00 0.00 0.00 2.74
6446 7574 8.827677 GGATGCATCTAAAACTAAAATACGTCT 58.172 33.333 25.28 0.00 0.00 4.18
6447 7575 8.609176 TGGATGCATCTAAAACTAAAATACGTC 58.391 33.333 25.28 3.59 0.00 4.34
6448 7576 8.500753 TGGATGCATCTAAAACTAAAATACGT 57.499 30.769 25.28 0.00 0.00 3.57
6449 7577 9.950680 AATGGATGCATCTAAAACTAAAATACG 57.049 29.630 25.28 0.00 0.00 3.06
6478 7606 9.619316 CGGAAAAACTTGTCACATAAATGAATA 57.381 29.630 0.00 0.00 0.00 1.75
6479 7607 7.598493 CCGGAAAAACTTGTCACATAAATGAAT 59.402 33.333 0.00 0.00 0.00 2.57
6480 7608 6.920758 CCGGAAAAACTTGTCACATAAATGAA 59.079 34.615 0.00 0.00 0.00 2.57
6481 7609 6.263392 TCCGGAAAAACTTGTCACATAAATGA 59.737 34.615 0.00 0.00 0.00 2.57
6482 7610 6.362283 GTCCGGAAAAACTTGTCACATAAATG 59.638 38.462 5.23 0.00 0.00 2.32
6483 7611 6.443792 GTCCGGAAAAACTTGTCACATAAAT 58.556 36.000 5.23 0.00 0.00 1.40
6484 7612 5.504337 CGTCCGGAAAAACTTGTCACATAAA 60.504 40.000 5.23 0.00 0.00 1.40
6485 7613 4.024725 CGTCCGGAAAAACTTGTCACATAA 60.025 41.667 5.23 0.00 0.00 1.90
6486 7614 3.495377 CGTCCGGAAAAACTTGTCACATA 59.505 43.478 5.23 0.00 0.00 2.29
6487 7615 2.289547 CGTCCGGAAAAACTTGTCACAT 59.710 45.455 5.23 0.00 0.00 3.21
6488 7616 1.666700 CGTCCGGAAAAACTTGTCACA 59.333 47.619 5.23 0.00 0.00 3.58
6489 7617 1.003223 CCGTCCGGAAAAACTTGTCAC 60.003 52.381 5.23 0.00 37.50 3.67
6490 7618 1.134461 TCCGTCCGGAAAAACTTGTCA 60.134 47.619 5.23 0.00 42.05 3.58
6491 7619 1.529865 CTCCGTCCGGAAAAACTTGTC 59.470 52.381 5.23 0.00 44.66 3.18
6492 7620 1.589803 CTCCGTCCGGAAAAACTTGT 58.410 50.000 5.23 0.00 44.66 3.16
6493 7621 0.872388 CCTCCGTCCGGAAAAACTTG 59.128 55.000 5.23 0.00 44.66 3.16
6494 7622 0.250597 CCCTCCGTCCGGAAAAACTT 60.251 55.000 5.23 0.00 44.66 2.66
6495 7623 1.123246 TCCCTCCGTCCGGAAAAACT 61.123 55.000 5.23 0.00 44.66 2.66
6496 7624 0.672711 CTCCCTCCGTCCGGAAAAAC 60.673 60.000 5.23 0.00 44.66 2.43
6497 7625 1.123246 ACTCCCTCCGTCCGGAAAAA 61.123 55.000 5.23 0.00 44.66 1.94
6498 7626 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
6499 7627 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
6500 7628 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
6501 7629 0.109342 GTATACTCCCTCCGTCCGGA 59.891 60.000 0.00 0.00 42.90 5.14
6502 7630 0.179009 TGTATACTCCCTCCGTCCGG 60.179 60.000 4.17 0.00 0.00 5.14
6503 7631 1.906990 ATGTATACTCCCTCCGTCCG 58.093 55.000 4.17 0.00 0.00 4.79
6504 7632 4.321824 GCTAAATGTATACTCCCTCCGTCC 60.322 50.000 4.17 0.00 0.00 4.79
6505 7633 4.280174 TGCTAAATGTATACTCCCTCCGTC 59.720 45.833 4.17 0.00 0.00 4.79
6506 7634 4.220724 TGCTAAATGTATACTCCCTCCGT 58.779 43.478 4.17 0.00 0.00 4.69
6507 7635 4.866508 TGCTAAATGTATACTCCCTCCG 57.133 45.455 4.17 0.00 0.00 4.63
6508 7636 5.485708 AGGATGCTAAATGTATACTCCCTCC 59.514 44.000 4.17 0.70 24.00 4.30
6509 7637 6.613153 AGGATGCTAAATGTATACTCCCTC 57.387 41.667 4.17 0.00 24.00 4.30
6510 7638 5.186021 CGAGGATGCTAAATGTATACTCCCT 59.814 44.000 4.17 0.00 43.26 4.20
6511 7639 5.047235 ACGAGGATGCTAAATGTATACTCCC 60.047 44.000 4.17 0.00 43.26 4.30
6512 7640 6.026947 ACGAGGATGCTAAATGTATACTCC 57.973 41.667 4.17 0.08 43.26 3.85
6513 7641 9.640963 AAATACGAGGATGCTAAATGTATACTC 57.359 33.333 4.17 0.00 42.90 2.59
6514 7642 9.998106 AAAATACGAGGATGCTAAATGTATACT 57.002 29.630 4.17 0.00 34.49 2.12
6516 7644 9.431887 GGAAAATACGAGGATGCTAAATGTATA 57.568 33.333 0.00 0.00 0.00 1.47
6517 7645 8.157476 AGGAAAATACGAGGATGCTAAATGTAT 58.843 33.333 0.00 0.00 0.00 2.29
6518 7646 7.506114 AGGAAAATACGAGGATGCTAAATGTA 58.494 34.615 0.00 0.00 0.00 2.29
6519 7647 6.357367 AGGAAAATACGAGGATGCTAAATGT 58.643 36.000 0.00 0.00 0.00 2.71
6520 7648 6.867662 AGGAAAATACGAGGATGCTAAATG 57.132 37.500 0.00 0.00 0.00 2.32
6521 7649 7.054124 TGAAGGAAAATACGAGGATGCTAAAT 58.946 34.615 0.00 0.00 0.00 1.40
6522 7650 6.411376 TGAAGGAAAATACGAGGATGCTAAA 58.589 36.000 0.00 0.00 0.00 1.85
6523 7651 5.984725 TGAAGGAAAATACGAGGATGCTAA 58.015 37.500 0.00 0.00 0.00 3.09
6524 7652 5.607939 TGAAGGAAAATACGAGGATGCTA 57.392 39.130 0.00 0.00 0.00 3.49
6525 7653 4.487714 TGAAGGAAAATACGAGGATGCT 57.512 40.909 0.00 0.00 0.00 3.79
6526 7654 5.296780 TGAATGAAGGAAAATACGAGGATGC 59.703 40.000 0.00 0.00 0.00 3.91
6527 7655 6.925610 TGAATGAAGGAAAATACGAGGATG 57.074 37.500 0.00 0.00 0.00 3.51
6528 7656 6.712547 GGATGAATGAAGGAAAATACGAGGAT 59.287 38.462 0.00 0.00 0.00 3.24
6529 7657 6.055588 GGATGAATGAAGGAAAATACGAGGA 58.944 40.000 0.00 0.00 0.00 3.71
6530 7658 5.822519 TGGATGAATGAAGGAAAATACGAGG 59.177 40.000 0.00 0.00 0.00 4.63
6531 7659 6.540189 AGTGGATGAATGAAGGAAAATACGAG 59.460 38.462 0.00 0.00 0.00 4.18
6532 7660 6.414732 AGTGGATGAATGAAGGAAAATACGA 58.585 36.000 0.00 0.00 0.00 3.43
6533 7661 6.683974 AGTGGATGAATGAAGGAAAATACG 57.316 37.500 0.00 0.00 0.00 3.06
6534 7662 9.566432 AGATAGTGGATGAATGAAGGAAAATAC 57.434 33.333 0.00 0.00 0.00 1.89
6535 7663 9.784531 GAGATAGTGGATGAATGAAGGAAAATA 57.215 33.333 0.00 0.00 0.00 1.40
6536 7664 7.443575 CGAGATAGTGGATGAATGAAGGAAAAT 59.556 37.037 0.00 0.00 0.00 1.82
6537 7665 6.763135 CGAGATAGTGGATGAATGAAGGAAAA 59.237 38.462 0.00 0.00 0.00 2.29
6538 7666 6.098266 TCGAGATAGTGGATGAATGAAGGAAA 59.902 38.462 0.00 0.00 0.00 3.13
6539 7667 5.598417 TCGAGATAGTGGATGAATGAAGGAA 59.402 40.000 0.00 0.00 0.00 3.36
6540 7668 5.010112 GTCGAGATAGTGGATGAATGAAGGA 59.990 44.000 0.00 0.00 0.00 3.36
6541 7669 5.226396 GTCGAGATAGTGGATGAATGAAGG 58.774 45.833 0.00 0.00 0.00 3.46
6542 7670 5.010516 AGGTCGAGATAGTGGATGAATGAAG 59.989 44.000 0.00 0.00 0.00 3.02
6543 7671 4.895889 AGGTCGAGATAGTGGATGAATGAA 59.104 41.667 0.00 0.00 0.00 2.57
6544 7672 4.474394 AGGTCGAGATAGTGGATGAATGA 58.526 43.478 0.00 0.00 0.00 2.57
6545 7673 4.862902 AGGTCGAGATAGTGGATGAATG 57.137 45.455 0.00 0.00 0.00 2.67
6546 7674 5.221541 GGAAAGGTCGAGATAGTGGATGAAT 60.222 44.000 0.00 0.00 0.00 2.57
6547 7675 4.099573 GGAAAGGTCGAGATAGTGGATGAA 59.900 45.833 0.00 0.00 0.00 2.57
6548 7676 3.637229 GGAAAGGTCGAGATAGTGGATGA 59.363 47.826 0.00 0.00 0.00 2.92
6549 7677 3.384789 TGGAAAGGTCGAGATAGTGGATG 59.615 47.826 0.00 0.00 0.00 3.51
6550 7678 3.643237 TGGAAAGGTCGAGATAGTGGAT 58.357 45.455 0.00 0.00 0.00 3.41
6551 7679 3.095912 TGGAAAGGTCGAGATAGTGGA 57.904 47.619 0.00 0.00 0.00 4.02
6552 7680 3.887621 TTGGAAAGGTCGAGATAGTGG 57.112 47.619 0.00 0.00 0.00 4.00
6553 7681 4.141937 TGGATTGGAAAGGTCGAGATAGTG 60.142 45.833 0.00 0.00 0.00 2.74
6554 7682 4.030913 TGGATTGGAAAGGTCGAGATAGT 58.969 43.478 0.00 0.00 0.00 2.12
6555 7683 4.672587 TGGATTGGAAAGGTCGAGATAG 57.327 45.455 0.00 0.00 0.00 2.08
6556 7684 5.183228 GTTTGGATTGGAAAGGTCGAGATA 58.817 41.667 0.00 0.00 0.00 1.98
6557 7685 4.010349 GTTTGGATTGGAAAGGTCGAGAT 58.990 43.478 0.00 0.00 0.00 2.75
6558 7686 3.181449 TGTTTGGATTGGAAAGGTCGAGA 60.181 43.478 0.00 0.00 0.00 4.04
6559 7687 3.058224 GTGTTTGGATTGGAAAGGTCGAG 60.058 47.826 0.00 0.00 0.00 4.04
6560 7688 2.882137 GTGTTTGGATTGGAAAGGTCGA 59.118 45.455 0.00 0.00 0.00 4.20
6561 7689 2.350388 CGTGTTTGGATTGGAAAGGTCG 60.350 50.000 0.00 0.00 0.00 4.79
6562 7690 2.621526 ACGTGTTTGGATTGGAAAGGTC 59.378 45.455 0.00 0.00 0.00 3.85
6563 7691 2.661718 ACGTGTTTGGATTGGAAAGGT 58.338 42.857 0.00 0.00 0.00 3.50
6564 7692 3.726291 AACGTGTTTGGATTGGAAAGG 57.274 42.857 0.00 0.00 0.00 3.11
6565 7693 5.005299 GTCAAAACGTGTTTGGATTGGAAAG 59.995 40.000 17.31 0.00 35.22 2.62
6566 7694 4.865365 GTCAAAACGTGTTTGGATTGGAAA 59.135 37.500 17.31 0.83 35.22 3.13
6567 7695 4.425520 GTCAAAACGTGTTTGGATTGGAA 58.574 39.130 17.31 1.35 35.22 3.53
6568 7696 3.181485 GGTCAAAACGTGTTTGGATTGGA 60.181 43.478 17.31 0.00 35.22 3.53
6569 7697 3.120041 GGTCAAAACGTGTTTGGATTGG 58.880 45.455 17.31 0.00 35.22 3.16
6570 7698 4.040445 AGGTCAAAACGTGTTTGGATTG 57.960 40.909 17.31 0.00 35.22 2.67
6571 7699 5.300792 ACATAGGTCAAAACGTGTTTGGATT 59.699 36.000 17.31 1.64 35.22 3.01
6572 7700 4.825085 ACATAGGTCAAAACGTGTTTGGAT 59.175 37.500 17.31 9.91 35.22 3.41
6573 7701 4.200874 ACATAGGTCAAAACGTGTTTGGA 58.799 39.130 17.31 0.00 32.36 3.53
6574 7702 4.561735 ACATAGGTCAAAACGTGTTTGG 57.438 40.909 17.31 0.00 32.36 3.28
6575 7703 6.750039 AGAAAACATAGGTCAAAACGTGTTTG 59.250 34.615 13.58 13.58 36.80 2.93
6576 7704 6.859017 AGAAAACATAGGTCAAAACGTGTTT 58.141 32.000 0.00 0.00 37.55 2.83
6577 7705 6.445357 AGAAAACATAGGTCAAAACGTGTT 57.555 33.333 0.00 0.00 31.61 3.32
6578 7706 6.764560 AGTAGAAAACATAGGTCAAAACGTGT 59.235 34.615 0.00 0.00 0.00 4.49
6579 7707 7.186021 AGTAGAAAACATAGGTCAAAACGTG 57.814 36.000 0.00 0.00 0.00 4.49
6580 7708 7.797038 AAGTAGAAAACATAGGTCAAAACGT 57.203 32.000 0.00 0.00 0.00 3.99
6581 7709 9.511144 AAAAAGTAGAAAACATAGGTCAAAACG 57.489 29.630 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.