AutoCloner

Multiple sequence alignment - TraesCS4B01G204600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G204600	chr4B	100.000	4938	0	0	1	4938	436498100	436503037	0.000000e+00	9119.0
1	TraesCS4B01G204600	chr4B	92.050	717	56	1	59	774	465746708	465747424	0.000000e+00	1007.0
2	TraesCS4B01G204600	chr4B	99.105	447	0	2	2709	3152	436499002	436499447	0.000000e+00	800.0
3	TraesCS4B01G204600	chr4B	99.105	447	0	2	903	1348	436500808	436501251	0.000000e+00	800.0
4	TraesCS4B01G204600	chr4B	93.137	102	7	0	4552	4653	436502600	436502701	3.080000e-32	150.0
5	TraesCS4B01G204600	chr4B	93.137	102	7	0	4501	4602	436502651	436502752	3.080000e-32	150.0
6	TraesCS4B01G204600	chr4B	94.118	51	3	0	4603	4653	436502600	436502650	1.470000e-10	78.7
7	TraesCS4B01G204600	chr4B	94.118	51	3	0	4501	4551	436502702	436502752	1.470000e-10	78.7
8	TraesCS4B01G204600	chr4A	90.795	1597	78	31	2709	4279	112588212	112586659	0.000000e+00	2071.0
9	TraesCS4B01G204600	chr4A	90.364	467	28	9	897	1348	112588218	112587754	9.150000e-167	597.0
10	TraesCS4B01G204600	chr4A	94.643	336	12	2	4501	4836	112585464	112585135	2.640000e-142	516.0
11	TraesCS4B01G204600	chr4A	90.722	388	19	4	4283	4653	112585750	112585363	7.380000e-138	501.0
12	TraesCS4B01G204600	chr4A	99.000	100	1	0	4839	4938	112585046	112584947	3.930000e-41	180.0
13	TraesCS4B01G204600	chr4A	95.745	94	4	0	4509	4602	112585405	112585312	8.560000e-33	152.0
14	TraesCS4B01G204600	chr4A	92.157	102	8	0	4552	4653	112585515	112585414	1.430000e-30	145.0
15	TraesCS4B01G204600	chr4A	98.039	51	1	0	4501	4551	112585362	112585312	6.810000e-14	89.8
16	TraesCS4B01G204600	chr4D	94.557	1231	50	8	2771	3988	353040637	353041863	0.000000e+00	1886.0
17	TraesCS4B01G204600	chr4D	91.238	913	60	8	4038	4938	353041859	353042763	0.000000e+00	1225.0
18	TraesCS4B01G204600	chr4D	95.098	714	34	1	59	772	426796831	426797543	0.000000e+00	1123.0
19	TraesCS4B01G204600	chr4D	93.147	394	17	5	965	1348	353040637	353041030	1.990000e-158	569.0
20	TraesCS4B01G204600	chr4D	93.137	102	7	0	4501	4602	353042378	353042479	3.080000e-32	150.0
21	TraesCS4B01G204600	chr4D	90.196	102	10	0	4552	4653	353042327	353042428	3.100000e-27	134.0
22	TraesCS4B01G204600	chr4D	98.039	51	1	0	4501	4551	353042429	353042479	6.810000e-14	89.8
23	TraesCS4B01G204600	chr4D	92.982	57	4	0	897	953	353040332	353040388	3.170000e-12	84.2
24	TraesCS4B01G204600	chr4D	96.078	51	2	0	4603	4653	353042327	353042377	3.170000e-12	84.2
25	TraesCS4B01G204600	chr3D	95.531	716	30	1	59	772	518566437	518565722	0.000000e+00	1144.0
26	TraesCS4B01G204600	chr3B	94.490	726	38	1	56	779	7160118	7159393	0.000000e+00	1118.0
27	TraesCS4B01G204600	chr3B	90.909	44	2	2	1346	1389	624779377	624779336	1.920000e-04	58.4
28	TraesCS4B01G204600	chrUn	93.733	718	42	2	57	772	379065728	379065012	0.000000e+00	1074.0
29	TraesCS4B01G204600	chr1B	93.733	718	42	2	57	772	602541855	602541139	0.000000e+00	1074.0
30	TraesCS4B01G204600	chr1B	93.454	718	44	2	57	772	602516192	602515476	0.000000e+00	1062.0
31	TraesCS4B01G204600	chr1B	93.315	718	45	2	57	772	601213543	601214259	0.000000e+00	1057.0
32	TraesCS4B01G204600	chr1B	92.877	716	49	1	59	772	602736456	602735741	0.000000e+00	1038.0
33	TraesCS4B01G204600	chr7A	81.125	800	110	24	1888	2657	57602734	57601946	1.970000e-168	603.0
34	TraesCS4B01G204600	chr6B	79.839	124	21	3	1346	1468	82758962	82759082	2.450000e-13	87.9
35	TraesCS4B01G204600	chr5B	93.182	44	2	1	1344	1386	93027800	93027757	4.130000e-06	63.9
36	TraesCS4B01G204600	chr3A	94.872	39	2	0	1346	1384	694567329	694567291	1.480000e-05	62.1
37	TraesCS4B01G204600	chr7B	100.000	32	0	0	1346	1377	250019765	250019796	5.340000e-05	60.2
38	TraesCS4B01G204600	chr6A	100.000	32	0	0	1346	1377	12718864	12718833	5.340000e-05	60.2
39	TraesCS4B01G204600	chr1A	100.000	32	0	0	1346	1377	571436081	571436050	5.340000e-05	60.2
40	TraesCS4B01G204600	chr7D	90.909	44	2	2	1346	1389	628453227	628453268	1.920000e-04	58.4
41	TraesCS4B01G204600	chr7D	90.244	41	4	0	1341	1381	447270094	447270134	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G204600	chr4B	436498100	436503037	4937	False	9119.000	9119	100.000000	1	4938	1	chr4B.!!$F1	4937
1	TraesCS4B01G204600	chr4B	465746708	465747424	716	False	1007.000	1007	92.050000	59	774	1	chr4B.!!$F2	715
2	TraesCS4B01G204600	chr4B	436499002	436502752	3750	False	342.900	800	95.453333	903	4653	6	chr4B.!!$F3	3750
3	TraesCS4B01G204600	chr4A	112584947	112588218	3271	True	531.475	2071	93.933125	897	4938	8	chr4A.!!$R1	4041
4	TraesCS4B01G204600	chr4D	426796831	426797543	712	False	1123.000	1123	95.098000	59	772	1	chr4D.!!$F1	713
5	TraesCS4B01G204600	chr4D	353040332	353042763	2431	False	527.775	1886	93.671750	897	4938	8	chr4D.!!$F2	4041
6	TraesCS4B01G204600	chr3D	518565722	518566437	715	True	1144.000	1144	95.531000	59	772	1	chr3D.!!$R1	713
7	TraesCS4B01G204600	chr3B	7159393	7160118	725	True	1118.000	1118	94.490000	56	779	1	chr3B.!!$R1	723
8	TraesCS4B01G204600	chrUn	379065012	379065728	716	True	1074.000	1074	93.733000	57	772	1	chrUn.!!$R1	715
9	TraesCS4B01G204600	chr1B	602541139	602541855	716	True	1074.000	1074	93.733000	57	772	1	chr1B.!!$R2	715
10	TraesCS4B01G204600	chr1B	602515476	602516192	716	True	1062.000	1062	93.454000	57	772	1	chr1B.!!$R1	715
11	TraesCS4B01G204600	chr1B	601213543	601214259	716	False	1057.000	1057	93.315000	57	772	1	chr1B.!!$F1	715
12	TraesCS4B01G204600	chr1B	602735741	602736456	715	True	1038.000	1038	92.877000	59	772	1	chr1B.!!$R3	713
13	TraesCS4B01G204600	chr7A	57601946	57602734	788	True	603.000	603	81.125000	1888	2657	1	chr7A.!!$R1	769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
888	889	0.392461	ACACACAAGACGCAACCAGT	60.392	50.0	0.0	0.0	0.0	4.0	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
4760	6013	4.401519	TCACTCCAGTAGCGCTAACTTAAT	59.598	41.667	20.73	0.86	0.0	1.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
127	128	0.757561	TGTCACGGTGGAGTTCCTCA	60.758	55.000	8.50	0.00	36.82	3.86
146	147	4.336993	CCTCAACAGCTACTACAGGTCTAG	59.663	50.000	0.00	0.00	30.72	2.43
289	290	2.345991	GCTACGTTGCCCTGTCCA	59.654	61.111	11.09	0.00	0.00	4.02
319	320	0.536006	CTTCCTGGATTCCGATGGGC	60.536	60.000	0.00	0.00	0.00	5.36
474	475	4.618920	ACAGAATACTTCACTTCCGGTT	57.381	40.909	0.00	0.00	0.00	4.44
545	546	2.355108	GCCTGGTGAAGTCAGCTTATGA	60.355	50.000	11.46	0.00	44.12	2.15
811	812	9.691362	TTAAGAGACTTTTGTTTGGATAATTGC	57.309	29.630	0.00	0.00	0.00	3.56
812	813	7.288810	AGAGACTTTTGTTTGGATAATTGCA	57.711	32.000	0.00	0.00	0.00	4.08
813	814	7.899973	AGAGACTTTTGTTTGGATAATTGCAT	58.100	30.769	0.00	0.00	0.00	3.96
814	815	9.023962	AGAGACTTTTGTTTGGATAATTGCATA	57.976	29.630	0.00	0.00	0.00	3.14
815	816	9.294030	GAGACTTTTGTTTGGATAATTGCATAG	57.706	33.333	0.00	0.00	0.00	2.23
816	817	9.023962	AGACTTTTGTTTGGATAATTGCATAGA	57.976	29.630	0.00	0.00	0.00	1.98
817	818	9.638239	GACTTTTGTTTGGATAATTGCATAGAA	57.362	29.630	0.00	0.00	0.00	2.10
822	823	9.598517	TTGTTTGGATAATTGCATAGAATTTCC	57.401	29.630	0.00	0.00	0.00	3.13
823	824	8.203485	TGTTTGGATAATTGCATAGAATTTCCC	58.797	33.333	0.00	0.00	29.96	3.97
824	825	8.424133	GTTTGGATAATTGCATAGAATTTCCCT	58.576	33.333	0.00	0.00	29.96	4.20
825	826	9.653516	TTTGGATAATTGCATAGAATTTCCCTA	57.346	29.630	0.00	0.00	29.96	3.53
826	827	9.827198	TTGGATAATTGCATAGAATTTCCCTAT	57.173	29.630	0.00	0.00	29.96	2.57
840	841	9.916360	AGAATTTCCCTATAAATAAACGAAGGT	57.084	29.630	0.00	0.00	0.00	3.50
851	852	9.797556	ATAAATAAACGAAGGTAAAAGAATGGC	57.202	29.630	0.00	0.00	0.00	4.40
852	853	4.514781	AAACGAAGGTAAAAGAATGGCC	57.485	40.909	0.00	0.00	0.00	5.36
853	854	3.149005	ACGAAGGTAAAAGAATGGCCA	57.851	42.857	8.56	8.56	0.00	5.36
854	855	3.081804	ACGAAGGTAAAAGAATGGCCAG	58.918	45.455	13.05	0.00	0.00	4.85
855	856	2.423538	CGAAGGTAAAAGAATGGCCAGG	59.576	50.000	13.05	0.00	0.00	4.45
856	857	3.431415	GAAGGTAAAAGAATGGCCAGGT	58.569	45.455	13.05	0.12	0.00	4.00
857	858	3.542969	AGGTAAAAGAATGGCCAGGTT	57.457	42.857	13.05	0.00	0.00	3.50
858	859	3.431415	AGGTAAAAGAATGGCCAGGTTC	58.569	45.455	13.05	11.61	0.00	3.62
859	860	3.161866	GGTAAAAGAATGGCCAGGTTCA	58.838	45.455	18.95	0.00	0.00	3.18
860	861	3.769300	GGTAAAAGAATGGCCAGGTTCAT	59.231	43.478	18.95	6.44	0.00	2.57
861	862	4.953579	GGTAAAAGAATGGCCAGGTTCATA	59.046	41.667	18.95	8.04	0.00	2.15
862	863	5.163550	GGTAAAAGAATGGCCAGGTTCATAC	60.164	44.000	18.95	16.55	0.00	2.39
863	864	2.332063	AGAATGGCCAGGTTCATACG	57.668	50.000	18.95	0.00	0.00	3.06
864	865	0.663153	GAATGGCCAGGTTCATACGC	59.337	55.000	13.05	0.00	0.00	4.42
865	866	0.751643	AATGGCCAGGTTCATACGCC	60.752	55.000	13.05	0.00	40.16	5.68
866	867	2.270850	GGCCAGGTTCATACGCCA	59.729	61.111	0.00	0.00	39.50	5.69
867	868	2.112815	GGCCAGGTTCATACGCCAC	61.113	63.158	0.00	0.00	39.50	5.01
868	869	1.376683	GCCAGGTTCATACGCCACA	60.377	57.895	0.00	0.00	0.00	4.17
869	870	0.958382	GCCAGGTTCATACGCCACAA	60.958	55.000	0.00	0.00	0.00	3.33
870	871	0.802494	CCAGGTTCATACGCCACAAC	59.198	55.000	0.00	0.00	0.00	3.32
871	872	1.518325	CAGGTTCATACGCCACAACA	58.482	50.000	0.00	0.00	0.00	3.33
872	873	1.196808	CAGGTTCATACGCCACAACAC	59.803	52.381	0.00	0.00	0.00	3.32
873	874	1.202710	AGGTTCATACGCCACAACACA	60.203	47.619	0.00	0.00	0.00	3.72
874	875	1.069500	GGTTCATACGCCACAACACAC	60.069	52.381	0.00	0.00	0.00	3.82
875	876	1.600013	GTTCATACGCCACAACACACA	59.400	47.619	0.00	0.00	0.00	3.72
876	877	1.954927	TCATACGCCACAACACACAA	58.045	45.000	0.00	0.00	0.00	3.33
877	878	1.870402	TCATACGCCACAACACACAAG	59.130	47.619	0.00	0.00	0.00	3.16
878	879	1.870402	CATACGCCACAACACACAAGA	59.130	47.619	0.00	0.00	0.00	3.02
879	880	1.292061	TACGCCACAACACACAAGAC	58.708	50.000	0.00	0.00	0.00	3.01
880	881	1.011242	CGCCACAACACACAAGACG	60.011	57.895	0.00	0.00	0.00	4.18
881	882	1.298339	GCCACAACACACAAGACGC	60.298	57.895	0.00	0.00	0.00	5.19
882	883	1.987704	GCCACAACACACAAGACGCA	61.988	55.000	0.00	0.00	0.00	5.24
883	884	0.449786	CCACAACACACAAGACGCAA	59.550	50.000	0.00	0.00	0.00	4.85
884	885	1.534028	CACAACACACAAGACGCAAC	58.466	50.000	0.00	0.00	0.00	4.17
885	886	0.450184	ACAACACACAAGACGCAACC	59.550	50.000	0.00	0.00	0.00	3.77
886	887	0.449786	CAACACACAAGACGCAACCA	59.550	50.000	0.00	0.00	0.00	3.67
887	888	0.732571	AACACACAAGACGCAACCAG	59.267	50.000	0.00	0.00	0.00	4.00
888	889	0.392461	ACACACAAGACGCAACCAGT	60.392	50.000	0.00	0.00	0.00	4.00
889	890	1.134640	ACACACAAGACGCAACCAGTA	60.135	47.619	0.00	0.00	0.00	2.74
890	891	2.143122	CACACAAGACGCAACCAGTAT	58.857	47.619	0.00	0.00	0.00	2.12
891	892	2.157668	CACACAAGACGCAACCAGTATC	59.842	50.000	0.00	0.00	0.00	2.24
892	893	2.224185	ACACAAGACGCAACCAGTATCA	60.224	45.455	0.00	0.00	0.00	2.15
893	894	2.157668	CACAAGACGCAACCAGTATCAC	59.842	50.000	0.00	0.00	0.00	3.06
894	895	2.037251	ACAAGACGCAACCAGTATCACT	59.963	45.455	0.00	0.00	0.00	3.41
895	896	2.370281	AGACGCAACCAGTATCACTG	57.630	50.000	0.00	0.00	45.53	3.66
4760	6013	3.503363	CAGGACAGCAATAGAAGTGCAAA	59.497	43.478	1.99	0.00	44.74	3.68
4819	6072	1.303074	CAAGCTGAGCAGGGAAGCA	60.303	57.895	7.39	0.00	39.47	3.91
4825	6078	2.032681	AGCAGGGAAGCACGGAAC	59.967	61.111	0.00	0.00	36.85	3.62

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	9.011095	GCCAAAAACCTCTTAATAGTTAGTCTT	57.989	33.333	0.00	0.00	0.00	3.01
36	37	8.161425	TGCCAAAAACCTCTTAATAGTTAGTCT	58.839	33.333	0.00	0.00	0.00	3.24
37	38	8.331730	TGCCAAAAACCTCTTAATAGTTAGTC	57.668	34.615	0.00	0.00	0.00	2.59
38	39	8.573885	GTTGCCAAAAACCTCTTAATAGTTAGT	58.426	33.333	0.00	0.00	0.00	2.24
39	40	8.793592	AGTTGCCAAAAACCTCTTAATAGTTAG	58.206	33.333	0.00	0.00	0.00	2.34
40	41	8.573035	CAGTTGCCAAAAACCTCTTAATAGTTA	58.427	33.333	0.00	0.00	0.00	2.24
41	42	7.433680	CAGTTGCCAAAAACCTCTTAATAGTT	58.566	34.615	0.00	0.00	0.00	2.24
42	43	6.516693	GCAGTTGCCAAAAACCTCTTAATAGT	60.517	38.462	0.00	0.00	34.31	2.12
43	44	5.863935	GCAGTTGCCAAAAACCTCTTAATAG	59.136	40.000	0.00	0.00	34.31	1.73
44	45	5.563867	CGCAGTTGCCAAAAACCTCTTAATA	60.564	40.000	0.00	0.00	37.91	0.98
45	46	4.631131	GCAGTTGCCAAAAACCTCTTAAT	58.369	39.130	0.00	0.00	34.31	1.40
46	47	3.490078	CGCAGTTGCCAAAAACCTCTTAA	60.490	43.478	0.00	0.00	37.91	1.85
47	48	2.034053	CGCAGTTGCCAAAAACCTCTTA	59.966	45.455	0.00	0.00	37.91	2.10
48	49	1.202405	CGCAGTTGCCAAAAACCTCTT	60.202	47.619	0.00	0.00	37.91	2.85
49	50	0.385390	CGCAGTTGCCAAAAACCTCT	59.615	50.000	0.00	0.00	37.91	3.69
50	51	0.597377	CCGCAGTTGCCAAAAACCTC	60.597	55.000	0.00	0.00	37.91	3.85
51	52	1.040339	TCCGCAGTTGCCAAAAACCT	61.040	50.000	0.00	0.00	37.91	3.50
52	53	0.874175	GTCCGCAGTTGCCAAAAACC	60.874	55.000	0.00	0.00	37.91	3.27
53	54	0.179124	TGTCCGCAGTTGCCAAAAAC	60.179	50.000	0.00	0.00	37.91	2.43
54	55	0.102120	CTGTCCGCAGTTGCCAAAAA	59.898	50.000	0.00	0.00	37.92	1.94
127	128	3.698289	TGCTAGACCTGTAGTAGCTGTT	58.302	45.455	0.00	0.00	39.97	3.16
289	290	0.031111	TCCAGGAAGGACCCATCGAT	60.031	55.000	0.00	0.00	43.07	3.59
309	310	4.802051	GCAGCTGGCCCATCGGAA	62.802	66.667	17.12	0.00	36.11	4.30
474	475	1.668919	GCGGAATCTGACTGAACGACA	60.669	52.381	0.00	0.00	0.00	4.35
583	584	8.581578	GTGAATTTTCTATGGTAAAAACTCCCA	58.418	33.333	0.00	0.00	30.20	4.37
785	786	9.691362	GCAATTATCCAAACAAAAGTCTCTTAA	57.309	29.630	0.00	0.00	0.00	1.85
786	787	8.855110	TGCAATTATCCAAACAAAAGTCTCTTA	58.145	29.630	0.00	0.00	0.00	2.10
787	788	7.725251	TGCAATTATCCAAACAAAAGTCTCTT	58.275	30.769	0.00	0.00	0.00	2.85
788	789	7.288810	TGCAATTATCCAAACAAAAGTCTCT	57.711	32.000	0.00	0.00	0.00	3.10
789	790	9.294030	CTATGCAATTATCCAAACAAAAGTCTC	57.706	33.333	0.00	0.00	0.00	3.36
790	791	9.023962	TCTATGCAATTATCCAAACAAAAGTCT	57.976	29.630	0.00	0.00	0.00	3.24
791	792	9.638239	TTCTATGCAATTATCCAAACAAAAGTC	57.362	29.630	0.00	0.00	0.00	3.01
796	797	9.598517	GGAAATTCTATGCAATTATCCAAACAA	57.401	29.630	0.00	0.00	30.80	2.83
797	798	8.203485	GGGAAATTCTATGCAATTATCCAAACA	58.797	33.333	0.00	0.00	31.37	2.83
798	799	8.424133	AGGGAAATTCTATGCAATTATCCAAAC	58.576	33.333	0.00	0.00	31.37	2.93
799	800	8.551682	AGGGAAATTCTATGCAATTATCCAAA	57.448	30.769	0.00	0.00	31.37	3.28
800	801	9.827198	ATAGGGAAATTCTATGCAATTATCCAA	57.173	29.630	0.00	0.00	31.37	3.53
814	815	9.916360	ACCTTCGTTTATTTATAGGGAAATTCT	57.084	29.630	0.00	0.00	31.51	2.40
825	826	9.797556	GCCATTCTTTTACCTTCGTTTATTTAT	57.202	29.630	0.00	0.00	0.00	1.40
826	827	8.245491	GGCCATTCTTTTACCTTCGTTTATTTA	58.755	33.333	0.00	0.00	0.00	1.40
827	828	7.094631	GGCCATTCTTTTACCTTCGTTTATTT	58.905	34.615	0.00	0.00	0.00	1.40
828	829	6.209788	TGGCCATTCTTTTACCTTCGTTTATT	59.790	34.615	0.00	0.00	0.00	1.40
829	830	5.712917	TGGCCATTCTTTTACCTTCGTTTAT	59.287	36.000	0.00	0.00	0.00	1.40
830	831	5.071370	TGGCCATTCTTTTACCTTCGTTTA	58.929	37.500	0.00	0.00	0.00	2.01
831	832	3.892588	TGGCCATTCTTTTACCTTCGTTT	59.107	39.130	0.00	0.00	0.00	3.60
832	833	3.492337	TGGCCATTCTTTTACCTTCGTT	58.508	40.909	0.00	0.00	0.00	3.85
833	834	3.081804	CTGGCCATTCTTTTACCTTCGT	58.918	45.455	5.51	0.00	0.00	3.85
834	835	2.423538	CCTGGCCATTCTTTTACCTTCG	59.576	50.000	5.51	0.00	0.00	3.79
835	836	3.431415	ACCTGGCCATTCTTTTACCTTC	58.569	45.455	5.51	0.00	0.00	3.46
836	837	3.542969	ACCTGGCCATTCTTTTACCTT	57.457	42.857	5.51	0.00	0.00	3.50
837	838	3.181423	TGAACCTGGCCATTCTTTTACCT	60.181	43.478	17.79	0.00	0.00	3.08
838	839	3.161866	TGAACCTGGCCATTCTTTTACC	58.838	45.455	17.79	0.00	0.00	2.85
839	840	5.448632	CGTATGAACCTGGCCATTCTTTTAC	60.449	44.000	17.79	14.68	0.00	2.01
840	841	4.638421	CGTATGAACCTGGCCATTCTTTTA	59.362	41.667	17.79	6.72	0.00	1.52
841	842	3.443681	CGTATGAACCTGGCCATTCTTTT	59.556	43.478	17.79	7.50	0.00	2.27
842	843	3.016736	CGTATGAACCTGGCCATTCTTT	58.983	45.455	17.79	9.51	0.00	2.52
843	844	2.643551	CGTATGAACCTGGCCATTCTT	58.356	47.619	17.79	14.33	0.00	2.52
844	845	1.747206	GCGTATGAACCTGGCCATTCT	60.747	52.381	17.79	7.99	0.00	2.40
845	846	0.663153	GCGTATGAACCTGGCCATTC	59.337	55.000	5.51	9.32	0.00	2.67
846	847	0.751643	GGCGTATGAACCTGGCCATT	60.752	55.000	5.51	0.00	43.23	3.16
847	848	1.152963	GGCGTATGAACCTGGCCAT	60.153	57.895	5.51	0.00	43.23	4.40
848	849	2.270850	GGCGTATGAACCTGGCCA	59.729	61.111	4.71	4.71	43.23	5.36
849	850	2.112815	GTGGCGTATGAACCTGGCC	61.113	63.158	0.00	0.00	44.00	5.36
850	851	0.958382	TTGTGGCGTATGAACCTGGC	60.958	55.000	0.00	0.00	0.00	4.85
851	852	0.802494	GTTGTGGCGTATGAACCTGG	59.198	55.000	0.00	0.00	0.00	4.45
852	853	1.196808	GTGTTGTGGCGTATGAACCTG	59.803	52.381	0.00	0.00	0.00	4.00
853	854	1.202710	TGTGTTGTGGCGTATGAACCT	60.203	47.619	0.00	0.00	0.00	3.50
854	855	1.069500	GTGTGTTGTGGCGTATGAACC	60.069	52.381	0.00	0.00	0.00	3.62
855	856	1.600013	TGTGTGTTGTGGCGTATGAAC	59.400	47.619	0.00	0.00	0.00	3.18
856	857	1.954927	TGTGTGTTGTGGCGTATGAA	58.045	45.000	0.00	0.00	0.00	2.57
857	858	1.870402	CTTGTGTGTTGTGGCGTATGA	59.130	47.619	0.00	0.00	0.00	2.15
858	859	1.870402	TCTTGTGTGTTGTGGCGTATG	59.130	47.619	0.00	0.00	0.00	2.39
859	860	1.871039	GTCTTGTGTGTTGTGGCGTAT	59.129	47.619	0.00	0.00	0.00	3.06
860	861	1.292061	GTCTTGTGTGTTGTGGCGTA	58.708	50.000	0.00	0.00	0.00	4.42
861	862	1.701545	CGTCTTGTGTGTTGTGGCGT	61.702	55.000	0.00	0.00	0.00	5.68
862	863	1.011242	CGTCTTGTGTGTTGTGGCG	60.011	57.895	0.00	0.00	0.00	5.69
863	864	1.298339	GCGTCTTGTGTGTTGTGGC	60.298	57.895	0.00	0.00	0.00	5.01
864	865	0.449786	TTGCGTCTTGTGTGTTGTGG	59.550	50.000	0.00	0.00	0.00	4.17
865	866	1.534028	GTTGCGTCTTGTGTGTTGTG	58.466	50.000	0.00	0.00	0.00	3.33
866	867	0.450184	GGTTGCGTCTTGTGTGTTGT	59.550	50.000	0.00	0.00	0.00	3.32
867	868	0.449786	TGGTTGCGTCTTGTGTGTTG	59.550	50.000	0.00	0.00	0.00	3.33
868	869	0.732571	CTGGTTGCGTCTTGTGTGTT	59.267	50.000	0.00	0.00	0.00	3.32
869	870	0.392461	ACTGGTTGCGTCTTGTGTGT	60.392	50.000	0.00	0.00	0.00	3.72
870	871	1.577468	TACTGGTTGCGTCTTGTGTG	58.423	50.000	0.00	0.00	0.00	3.82
871	872	2.224185	TGATACTGGTTGCGTCTTGTGT	60.224	45.455	0.00	0.00	0.00	3.72
872	873	2.157668	GTGATACTGGTTGCGTCTTGTG	59.842	50.000	0.00	0.00	0.00	3.33
873	874	2.037251	AGTGATACTGGTTGCGTCTTGT	59.963	45.455	0.00	0.00	0.00	3.16
874	875	2.413112	CAGTGATACTGGTTGCGTCTTG	59.587	50.000	1.08	0.00	42.35	3.02
875	876	2.688507	CAGTGATACTGGTTGCGTCTT	58.311	47.619	1.08	0.00	42.35	3.01
876	877	2.370281	CAGTGATACTGGTTGCGTCT	57.630	50.000	1.08	0.00	42.35	4.18
886	887	1.964223	CCGGCCTGATACAGTGATACT	59.036	52.381	0.00	0.00	0.00	2.12
887	888	1.000955	CCCGGCCTGATACAGTGATAC	59.999	57.143	0.00	0.00	0.00	2.24
888	889	1.338107	CCCGGCCTGATACAGTGATA	58.662	55.000	0.00	0.00	0.00	2.15
889	890	0.691078	ACCCGGCCTGATACAGTGAT	60.691	55.000	0.00	0.00	0.00	3.06
890	891	1.305802	ACCCGGCCTGATACAGTGA	60.306	57.895	0.00	0.00	0.00	3.41
891	892	1.144057	GACCCGGCCTGATACAGTG	59.856	63.158	0.00	0.00	0.00	3.66
892	893	1.305802	TGACCCGGCCTGATACAGT	60.306	57.895	0.00	0.00	0.00	3.55
893	894	1.043116	TCTGACCCGGCCTGATACAG	61.043	60.000	0.00	5.13	0.00	2.74
894	895	1.001120	TCTGACCCGGCCTGATACA	59.999	57.895	0.00	0.00	0.00	2.29
895	896	1.442148	GTCTGACCCGGCCTGATAC	59.558	63.158	0.00	0.00	0.00	2.24
4760	6013	4.401519	TCACTCCAGTAGCGCTAACTTAAT	59.598	41.667	20.73	0.86	0.00	1.40
4836	6089	4.341520	AGATCAAGAGGTAATCACGTACCC	59.658	45.833	1.53	0.00	44.11	3.69
4837	6090	5.067413	TCAGATCAAGAGGTAATCACGTACC	59.933	44.000	0.00	0.00	43.48	3.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.