Multiple sequence alignment - TraesCS4B01G203900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G203900 chr4B 100.000 4426 0 0 1 4426 435487596 435483171 0.000000e+00 8174.0
1 TraesCS4B01G203900 chr4B 97.630 211 4 1 3902 4112 151911617 151911826 1.170000e-95 361.0
2 TraesCS4B01G203900 chr4A 92.221 3098 150 40 46 3082 113333184 113330117 0.000000e+00 4301.0
3 TraesCS4B01G203900 chr4A 98.305 177 3 0 3902 4078 213698779 213698955 1.200000e-80 311.0
4 TraesCS4B01G203900 chr4A 89.674 184 19 0 3261 3444 113329952 113329769 7.400000e-58 235.0
5 TraesCS4B01G203900 chr4A 80.676 207 19 14 3717 3907 113328809 113328608 1.660000e-29 141.0
6 TraesCS4B01G203900 chr4A 93.827 81 3 2 3120 3199 113330116 113330037 2.160000e-23 121.0
7 TraesCS4B01G203900 chr4D 94.095 2845 106 26 590 3403 352117615 352120428 0.000000e+00 4266.0
8 TraesCS4B01G203900 chr4D 86.345 476 41 11 46 508 352116992 352117456 8.550000e-137 497.0
9 TraesCS4B01G203900 chr4D 90.458 262 24 1 4114 4374 352121295 352121556 1.180000e-90 344.0
10 TraesCS4B01G203900 chr4D 82.338 385 30 12 3475 3853 352120880 352121232 2.590000e-77 300.0
11 TraesCS4B01G203900 chr4D 90.995 211 14 5 3902 4111 105926235 105926441 3.370000e-71 279.0
12 TraesCS4B01G203900 chr4D 90.217 92 7 2 3757 3847 352121329 352121419 7.780000e-23 119.0
13 TraesCS4B01G203900 chr1A 79.838 1111 175 35 1594 2690 23816724 23817799 0.000000e+00 765.0
14 TraesCS4B01G203900 chr1A 86.154 65 6 3 456 518 65627138 65627201 2.860000e-07 67.6
15 TraesCS4B01G203900 chr1D 78.947 1159 186 42 1564 2693 22625525 22624396 0.000000e+00 736.0
16 TraesCS4B01G203900 chr1D 91.667 108 8 1 456 562 77379830 77379723 9.920000e-32 148.0
17 TraesCS4B01G203900 chr1D 100.000 37 0 0 455 491 426167482 426167518 7.940000e-08 69.4
18 TraesCS4B01G203900 chr1B 78.202 1179 192 45 1550 2697 38832528 38833672 0.000000e+00 693.0
19 TraesCS4B01G203900 chr1B 88.785 107 10 2 456 562 810283 810387 3.590000e-26 130.0
20 TraesCS4B01G203900 chr1B 88.372 43 5 0 456 498 404507408 404507366 8.000000e-03 52.8
21 TraesCS4B01G203900 chr5B 97.642 212 3 2 3902 4113 586918182 586918391 3.250000e-96 363.0
22 TraesCS4B01G203900 chr5B 90.909 143 13 0 1401 1543 621057258 621057116 4.520000e-45 193.0
23 TraesCS4B01G203900 chr5B 94.393 107 6 0 1211 1317 621057389 621057283 9.850000e-37 165.0
24 TraesCS4B01G203900 chr5B 87.302 63 6 2 457 519 53738630 53738690 2.210000e-08 71.3
25 TraesCS4B01G203900 chrUn 96.729 214 7 0 3902 4115 407864979 407865192 1.510000e-94 357.0
26 TraesCS4B01G203900 chr3A 96.729 214 6 1 3902 4115 57778575 57778787 5.440000e-94 355.0
27 TraesCS4B01G203900 chr3A 97.156 211 5 1 3902 4112 635518812 635519021 5.440000e-94 355.0
28 TraesCS4B01G203900 chr3B 97.143 210 5 1 3902 4111 216399220 216399428 1.960000e-93 353.0
29 TraesCS4B01G203900 chr7B 97.129 209 5 1 3902 4110 308844058 308843851 7.040000e-93 351.0
30 TraesCS4B01G203900 chr7B 91.837 147 12 0 1397 1543 612858962 612859108 5.800000e-49 206.0
31 TraesCS4B01G203900 chr5D 86.429 280 31 4 1211 1488 80220268 80220542 2.590000e-77 300.0
32 TraesCS4B01G203900 chr5D 93.519 108 6 1 456 562 449691460 449691353 4.580000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G203900 chr4B 435483171 435487596 4425 True 8174.0 8174 100.0000 1 4426 1 chr4B.!!$R1 4425
1 TraesCS4B01G203900 chr4A 113328608 113333184 4576 True 1199.5 4301 89.0995 46 3907 4 chr4A.!!$R1 3861
2 TraesCS4B01G203900 chr4D 352116992 352121556 4564 False 1105.2 4266 88.6906 46 4374 5 chr4D.!!$F2 4328
3 TraesCS4B01G203900 chr1A 23816724 23817799 1075 False 765.0 765 79.8380 1594 2690 1 chr1A.!!$F1 1096
4 TraesCS4B01G203900 chr1D 22624396 22625525 1129 True 736.0 736 78.9470 1564 2693 1 chr1D.!!$R1 1129
5 TraesCS4B01G203900 chr1B 38832528 38833672 1144 False 693.0 693 78.2020 1550 2697 1 chr1B.!!$F2 1147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 179 0.104304 CGGTAATCGTCAAGGGAGGG 59.896 60.000 0.0 0.0 0.00 4.30 F
178 181 1.134491 GGTAATCGTCAAGGGAGGGTG 60.134 57.143 0.0 0.0 0.00 4.61 F
179 182 1.134491 GTAATCGTCAAGGGAGGGTGG 60.134 57.143 0.0 0.0 0.00 4.61 F
1388 1569 1.153349 CAGCCTTTCCTCTACGCCC 60.153 63.158 0.0 0.0 0.00 6.13 F
2402 2604 1.077930 CAGGTGCTGCCAGTATGCT 60.078 57.895 0.0 0.0 40.61 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2057 2256 1.030457 CCTTGTAGAGGCCGTCGTAT 58.970 55.000 0.00 0.0 39.09 3.06 R
2093 2292 3.646715 CCTGACTTTCCGGGGCCA 61.647 66.667 4.39 0.0 0.00 5.36 R
2203 2402 1.874019 CGGATGTTGGAGTCGAGCG 60.874 63.158 0.00 0.0 0.00 5.03 R
2770 2972 0.108138 CCATCTCGCCGGAAACTTCT 60.108 55.000 5.05 0.0 0.00 2.85 R
3982 5257 0.036875 CCAAACCTCCACTCCACTCC 59.963 60.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
22 23 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
23 24 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
24 25 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
25 26 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
26 27 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
27 28 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
28 29 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
29 30 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
30 31 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
31 32 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
32 33 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
33 34 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
34 35 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
35 36 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
36 37 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
37 38 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
38 39 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
39 40 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
40 41 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
41 42 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
42 43 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
43 44 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
44 45 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
106 108 4.363991 AGTGCACTCTTTTCTTCATCCT 57.636 40.909 15.25 0.00 0.00 3.24
146 149 2.829120 AGAGGAGTTTCTAGTGAGGCAC 59.171 50.000 0.00 0.00 34.10 5.01
166 169 1.366111 ATGCTTTGCGCGGTAATCGT 61.366 50.000 8.83 0.00 43.27 3.73
173 176 1.140161 CGCGGTAATCGTCAAGGGA 59.860 57.895 0.00 0.00 41.72 4.20
175 178 0.529992 GCGGTAATCGTCAAGGGAGG 60.530 60.000 0.00 0.00 41.72 4.30
176 179 0.104304 CGGTAATCGTCAAGGGAGGG 59.896 60.000 0.00 0.00 0.00 4.30
177 180 1.201424 GGTAATCGTCAAGGGAGGGT 58.799 55.000 0.00 0.00 0.00 4.34
178 181 1.134491 GGTAATCGTCAAGGGAGGGTG 60.134 57.143 0.00 0.00 0.00 4.61
179 182 1.134491 GTAATCGTCAAGGGAGGGTGG 60.134 57.143 0.00 0.00 0.00 4.61
180 183 1.562672 AATCGTCAAGGGAGGGTGGG 61.563 60.000 0.00 0.00 0.00 4.61
181 184 3.717294 CGTCAAGGGAGGGTGGGG 61.717 72.222 0.00 0.00 0.00 4.96
204 207 5.642919 GGGTGTTATGAAACCACGTGTTATA 59.357 40.000 15.65 0.00 38.27 0.98
245 248 5.465390 TGACAAAAACTAGACACCTTGATCG 59.535 40.000 0.00 0.00 0.00 3.69
271 274 8.970859 AGGATCAAACTTCATATGTAAGGAAG 57.029 34.615 15.06 8.84 42.79 3.46
344 347 5.138758 TCTAGACTATGGCAAGTTCCCTA 57.861 43.478 0.00 0.00 0.00 3.53
376 381 7.126421 AGGGATCTTGTAGATAAGCTTTGAGAA 59.874 37.037 3.20 0.00 34.53 2.87
377 382 7.936301 GGGATCTTGTAGATAAGCTTTGAGAAT 59.064 37.037 3.20 0.00 34.53 2.40
388 411 5.444663 AGCTTTGAGAATTGAAGACCAAC 57.555 39.130 0.00 0.00 37.63 3.77
450 473 7.616150 GGCTAAGGAACAGATAGATATACTCCA 59.384 40.741 0.00 0.00 0.00 3.86
521 572 3.446310 AAAGTTTGGCCAAGTTTACCG 57.554 42.857 19.48 0.00 36.42 4.02
540 591 9.673454 GTTTACCGAAACAATCTAAACTTTCAT 57.327 29.630 0.00 0.00 43.80 2.57
717 858 5.941788 AGTTTCTCTCCCTACATTTTGTGT 58.058 37.500 0.00 0.00 44.95 3.72
730 871 7.592533 CCTACATTTTGTGTTCATTGTTCTCTG 59.407 37.037 0.00 0.00 42.29 3.35
738 879 8.334263 TGTGTTCATTGTTCTCTGCAAATATA 57.666 30.769 0.00 0.00 0.00 0.86
740 881 9.793252 GTGTTCATTGTTCTCTGCAAATATATT 57.207 29.630 0.00 0.00 0.00 1.28
742 883 9.455847 GTTCATTGTTCTCTGCAAATATATTCC 57.544 33.333 0.00 0.00 0.00 3.01
743 884 8.985315 TCATTGTTCTCTGCAAATATATTCCT 57.015 30.769 0.00 0.00 0.00 3.36
768 930 2.093128 ACCCTTAATTCTCGCGTCCAAT 60.093 45.455 5.77 0.00 0.00 3.16
769 931 2.287915 CCCTTAATTCTCGCGTCCAATG 59.712 50.000 5.77 0.00 0.00 2.82
785 947 5.461078 CGTCCAATGTACCCTTAATAACGAG 59.539 44.000 0.00 0.00 0.00 4.18
843 1005 1.290203 CATCCACGACTCGAAATGGG 58.710 55.000 5.20 0.00 32.73 4.00
910 1072 2.029560 GGAAGTAGAAAAGACCCGACGT 60.030 50.000 0.00 0.00 0.00 4.34
974 1140 4.367023 CGGTCTCCAACGGCGGAA 62.367 66.667 13.24 0.00 33.65 4.30
1388 1569 1.153349 CAGCCTTTCCTCTACGCCC 60.153 63.158 0.00 0.00 0.00 6.13
1389 1570 1.612442 AGCCTTTCCTCTACGCCCA 60.612 57.895 0.00 0.00 0.00 5.36
1392 1573 1.221021 CTTTCCTCTACGCCCACCC 59.779 63.158 0.00 0.00 0.00 4.61
1393 1574 2.253403 CTTTCCTCTACGCCCACCCC 62.253 65.000 0.00 0.00 0.00 4.95
1670 1869 2.040278 CTCTCCCAGGGCCTCTGT 59.960 66.667 0.95 0.00 41.83 3.41
2093 2292 2.695666 CAAGGTCGACTCCATCACCTAT 59.304 50.000 16.46 0.00 37.67 2.57
2304 2506 2.972625 TCAACAATGTGGATCGAGACC 58.027 47.619 4.72 4.72 0.00 3.85
2402 2604 1.077930 CAGGTGCTGCCAGTATGCT 60.078 57.895 0.00 0.00 40.61 3.79
2438 2640 1.293498 GTCGTGGTCATCTGGCAGT 59.707 57.895 15.27 0.00 0.00 4.40
2492 2694 3.560278 GCGTACAATGCCGACGGG 61.560 66.667 17.22 0.56 37.08 5.28
2721 2923 4.210093 ACGACGGTCACCACGCAA 62.210 61.111 9.10 0.00 34.00 4.85
2770 2972 2.025584 CGGCATCGTCGATCCGAA 59.974 61.111 27.57 0.00 44.23 4.30
2855 3057 2.585247 GAACCTCCCCGATTCGCG 60.585 66.667 0.00 0.00 40.47 5.87
2858 3060 4.830765 CCTCCCCGATTCGCGCAA 62.831 66.667 8.75 0.78 39.11 4.85
3064 3266 1.099295 ATCGACTACGGCATCGGTCA 61.099 55.000 0.00 0.00 41.39 4.02
3108 3310 4.681781 GCGAGAGGGATCAGAGATGAAAAA 60.682 45.833 0.00 0.00 0.00 1.94
3112 3314 6.413892 AGAGGGATCAGAGATGAAAAAGTTC 58.586 40.000 0.00 0.00 0.00 3.01
3113 3315 5.181748 AGGGATCAGAGATGAAAAAGTTCG 58.818 41.667 0.00 0.00 36.46 3.95
3169 3371 1.640917 GGTCTCTGTAGTTGGTGGGA 58.359 55.000 0.00 0.00 0.00 4.37
3171 3373 2.572104 GGTCTCTGTAGTTGGTGGGAAT 59.428 50.000 0.00 0.00 0.00 3.01
3175 3377 5.181433 GTCTCTGTAGTTGGTGGGAATTTTC 59.819 44.000 0.00 0.00 0.00 2.29
3190 3392 7.281999 GTGGGAATTTTCCTTTTTGTGATTTCA 59.718 33.333 9.13 0.00 46.72 2.69
3213 3415 5.255397 TCATTCTTGATGTGGGTTTAGGT 57.745 39.130 0.00 0.00 37.06 3.08
3214 3416 5.640147 TCATTCTTGATGTGGGTTTAGGTT 58.360 37.500 0.00 0.00 37.06 3.50
3215 3417 6.785076 TCATTCTTGATGTGGGTTTAGGTTA 58.215 36.000 0.00 0.00 37.06 2.85
3216 3418 7.410174 TCATTCTTGATGTGGGTTTAGGTTAT 58.590 34.615 0.00 0.00 37.06 1.89
3217 3419 7.893302 TCATTCTTGATGTGGGTTTAGGTTATT 59.107 33.333 0.00 0.00 37.06 1.40
3290 3545 2.166254 CTGGCACAAAACACCTTCAGTT 59.834 45.455 0.00 0.00 38.70 3.16
3303 3558 5.645497 ACACCTTCAGTTCTTCATATTCAGC 59.355 40.000 0.00 0.00 0.00 4.26
3341 3596 9.606631 GTATTTATGTGGAAAATCAGACTCTCT 57.393 33.333 0.00 0.00 0.00 3.10
3396 3651 3.178865 AGTTACTCCCTCCGATCCAAAA 58.821 45.455 0.00 0.00 0.00 2.44
3407 3852 5.935789 CCTCCGATCCAAAACTAAGTTGTAA 59.064 40.000 0.00 0.00 0.00 2.41
3416 3861 9.738832 TCCAAAACTAAGTTGTAATAAAACTGC 57.261 29.630 0.00 0.00 37.90 4.40
3421 3866 7.570161 ACTAAGTTGTAATAAAACTGCGTCAC 58.430 34.615 0.00 0.00 37.90 3.67
3429 3874 9.205719 TGTAATAAAACTGCGTCACTTAATGTA 57.794 29.630 0.00 0.00 0.00 2.29
3444 3889 9.639601 TCACTTAATGTACATTGAAGTGAGTAG 57.360 33.333 34.73 24.21 40.79 2.57
3446 3891 9.424319 ACTTAATGTACATTGAAGTGAGTAGTG 57.576 33.333 27.62 8.82 30.73 2.74
3448 3893 9.639601 TTAATGTACATTGAAGTGAGTAGTGAG 57.360 33.333 27.62 0.00 32.50 3.51
3450 3895 7.754851 TGTACATTGAAGTGAGTAGTGAGTA 57.245 36.000 0.00 0.00 0.00 2.59
3454 3899 8.349568 ACATTGAAGTGAGTAGTGAGTACATA 57.650 34.615 0.00 0.00 33.55 2.29
3456 3901 7.754851 TTGAAGTGAGTAGTGAGTACATACA 57.245 36.000 0.00 0.00 33.55 2.29
3458 3903 7.591165 TGAAGTGAGTAGTGAGTACATACAAC 58.409 38.462 0.00 0.00 33.55 3.32
3545 4813 3.446873 TGATTGTGTGGGCAATGAATACC 59.553 43.478 0.00 0.00 38.98 2.73
3625 4897 6.599638 GGCCTCTTTCTCAAATACTTACACAT 59.400 38.462 0.00 0.00 0.00 3.21
3683 4957 3.868757 ACTCTAGCTAACAATCGTGCA 57.131 42.857 0.00 0.00 0.00 4.57
3684 4958 3.775202 ACTCTAGCTAACAATCGTGCAG 58.225 45.455 0.00 0.00 0.00 4.41
3685 4959 3.119291 CTCTAGCTAACAATCGTGCAGG 58.881 50.000 0.00 0.00 0.00 4.85
3686 4960 2.496070 TCTAGCTAACAATCGTGCAGGT 59.504 45.455 6.26 0.00 0.00 4.00
3687 4961 1.442769 AGCTAACAATCGTGCAGGTG 58.557 50.000 6.26 0.79 0.00 4.00
3688 4962 0.179189 GCTAACAATCGTGCAGGTGC 60.179 55.000 6.26 0.00 42.50 5.01
3706 4980 4.586001 AGGTGCAACACTCTTCAATTTGAT 59.414 37.500 3.64 0.00 39.98 2.57
3752 5026 1.412710 TGTCACCCACTCTCACAACTC 59.587 52.381 0.00 0.00 0.00 3.01
3792 5067 6.837048 TGATGCTACCTAATAGTCAGGTGTTA 59.163 38.462 4.28 0.00 46.08 2.41
3801 5076 7.728981 CCTAATAGTCAGGTGTTAGGGAATCTA 59.271 40.741 0.00 0.00 39.52 1.98
3830 5105 6.439675 TGTCATGTGTTCATATGATTGTGG 57.560 37.500 6.17 0.00 35.91 4.17
3835 5110 5.559770 TGTGTTCATATGATTGTGGTCACT 58.440 37.500 6.17 0.00 0.00 3.41
3836 5111 6.003326 TGTGTTCATATGATTGTGGTCACTT 58.997 36.000 6.17 0.00 0.00 3.16
3837 5112 6.489700 TGTGTTCATATGATTGTGGTCACTTT 59.510 34.615 6.17 0.00 0.00 2.66
3838 5113 6.803320 GTGTTCATATGATTGTGGTCACTTTG 59.197 38.462 6.17 0.00 0.00 2.77
3839 5114 5.565592 TCATATGATTGTGGTCACTTTGC 57.434 39.130 0.00 0.00 0.00 3.68
3840 5115 5.008980 TCATATGATTGTGGTCACTTTGCA 58.991 37.500 0.00 0.00 0.00 4.08
3841 5116 5.653330 TCATATGATTGTGGTCACTTTGCAT 59.347 36.000 0.00 4.32 0.00 3.96
3842 5117 3.921119 TGATTGTGGTCACTTTGCATC 57.079 42.857 2.66 0.00 0.00 3.91
3843 5118 2.226200 TGATTGTGGTCACTTTGCATCG 59.774 45.455 2.66 0.00 0.00 3.84
3844 5119 0.950836 TTGTGGTCACTTTGCATCGG 59.049 50.000 2.66 0.00 0.00 4.18
3845 5120 0.179032 TGTGGTCACTTTGCATCGGT 60.179 50.000 2.66 0.00 0.00 4.69
3846 5121 0.951558 GTGGTCACTTTGCATCGGTT 59.048 50.000 0.00 0.00 0.00 4.44
3847 5122 0.950836 TGGTCACTTTGCATCGGTTG 59.049 50.000 0.00 0.00 0.00 3.77
3857 5132 2.658538 CATCGGTTGCAGACTCTCG 58.341 57.895 0.00 0.00 0.00 4.04
3858 5133 1.153745 ATCGGTTGCAGACTCTCGC 60.154 57.895 0.00 0.00 0.00 5.03
3859 5134 2.564553 ATCGGTTGCAGACTCTCGCC 62.565 60.000 0.00 0.00 0.00 5.54
3860 5135 2.435059 GGTTGCAGACTCTCGCCC 60.435 66.667 0.00 0.00 0.00 6.13
3861 5136 2.343758 GTTGCAGACTCTCGCCCA 59.656 61.111 0.00 0.00 0.00 5.36
3862 5137 1.301716 GTTGCAGACTCTCGCCCAA 60.302 57.895 0.00 0.00 0.00 4.12
3863 5138 0.884704 GTTGCAGACTCTCGCCCAAA 60.885 55.000 0.00 0.00 0.00 3.28
3864 5139 0.884704 TTGCAGACTCTCGCCCAAAC 60.885 55.000 0.00 0.00 0.00 2.93
3865 5140 2.383527 GCAGACTCTCGCCCAAACG 61.384 63.158 0.00 0.00 0.00 3.60
3866 5141 1.289066 CAGACTCTCGCCCAAACGA 59.711 57.895 0.00 0.00 40.36 3.85
3867 5142 0.319555 CAGACTCTCGCCCAAACGAA 60.320 55.000 0.00 0.00 42.39 3.85
3868 5143 0.038159 AGACTCTCGCCCAAACGAAG 60.038 55.000 0.00 0.00 42.39 3.79
3870 5145 0.600255 ACTCTCGCCCAAACGAAGTG 60.600 55.000 0.00 0.00 45.00 3.16
3871 5146 0.600255 CTCTCGCCCAAACGAAGTGT 60.600 55.000 0.00 0.00 45.00 3.55
3872 5147 0.599204 TCTCGCCCAAACGAAGTGTC 60.599 55.000 0.00 0.00 45.00 3.67
3881 5156 3.449042 CGAAGTGTCGCGTCCTTC 58.551 61.111 18.46 18.46 41.08 3.46
3882 5157 1.081376 CGAAGTGTCGCGTCCTTCT 60.081 57.895 22.61 9.20 41.08 2.85
3883 5158 1.337817 CGAAGTGTCGCGTCCTTCTG 61.338 60.000 22.61 16.06 41.08 3.02
3884 5159 0.318784 GAAGTGTCGCGTCCTTCTGT 60.319 55.000 20.04 0.00 33.45 3.41
3885 5160 0.318784 AAGTGTCGCGTCCTTCTGTC 60.319 55.000 5.77 0.00 0.00 3.51
3886 5161 1.173444 AGTGTCGCGTCCTTCTGTCT 61.173 55.000 5.77 0.00 0.00 3.41
3887 5162 0.318784 GTGTCGCGTCCTTCTGTCTT 60.319 55.000 5.77 0.00 0.00 3.01
3888 5163 0.039437 TGTCGCGTCCTTCTGTCTTC 60.039 55.000 5.77 0.00 0.00 2.87
3889 5164 0.241481 GTCGCGTCCTTCTGTCTTCT 59.759 55.000 5.77 0.00 0.00 2.85
3890 5165 0.959553 TCGCGTCCTTCTGTCTTCTT 59.040 50.000 5.77 0.00 0.00 2.52
3891 5166 2.095364 GTCGCGTCCTTCTGTCTTCTTA 60.095 50.000 5.77 0.00 0.00 2.10
3892 5167 2.161808 TCGCGTCCTTCTGTCTTCTTAG 59.838 50.000 5.77 0.00 0.00 2.18
3893 5168 2.161808 CGCGTCCTTCTGTCTTCTTAGA 59.838 50.000 0.00 0.00 0.00 2.10
3894 5169 3.366070 CGCGTCCTTCTGTCTTCTTAGAA 60.366 47.826 0.00 0.00 30.65 2.10
3895 5170 3.921630 GCGTCCTTCTGTCTTCTTAGAAC 59.078 47.826 0.00 0.00 30.65 3.01
3896 5171 4.159857 CGTCCTTCTGTCTTCTTAGAACG 58.840 47.826 0.00 0.00 30.65 3.95
3897 5172 4.320348 CGTCCTTCTGTCTTCTTAGAACGT 60.320 45.833 0.00 0.00 30.65 3.99
3898 5173 5.155643 GTCCTTCTGTCTTCTTAGAACGTC 58.844 45.833 0.00 0.00 30.65 4.34
3899 5174 4.825634 TCCTTCTGTCTTCTTAGAACGTCA 59.174 41.667 0.00 0.00 30.65 4.35
3900 5175 5.301045 TCCTTCTGTCTTCTTAGAACGTCAA 59.699 40.000 0.00 0.00 30.65 3.18
3901 5176 5.631512 CCTTCTGTCTTCTTAGAACGTCAAG 59.368 44.000 0.00 0.00 30.65 3.02
3902 5177 6.387041 TTCTGTCTTCTTAGAACGTCAAGA 57.613 37.500 0.00 0.00 30.65 3.02
3903 5178 6.576662 TCTGTCTTCTTAGAACGTCAAGAT 57.423 37.500 7.72 0.00 31.15 2.40
3904 5179 6.613233 TCTGTCTTCTTAGAACGTCAAGATC 58.387 40.000 7.72 0.00 31.15 2.75
3905 5180 6.431543 TCTGTCTTCTTAGAACGTCAAGATCT 59.568 38.462 7.72 0.00 35.98 2.75
3906 5181 6.982852 TGTCTTCTTAGAACGTCAAGATCTT 58.017 36.000 0.88 0.88 33.75 2.40
3907 5182 7.085116 TGTCTTCTTAGAACGTCAAGATCTTC 58.915 38.462 4.57 0.00 33.75 2.87
3908 5183 6.249682 GTCTTCTTAGAACGTCAAGATCTTCG 59.750 42.308 4.57 9.94 33.75 3.79
3909 5184 5.874895 TCTTAGAACGTCAAGATCTTCGA 57.125 39.130 19.87 12.02 33.75 3.71
3910 5185 5.629097 TCTTAGAACGTCAAGATCTTCGAC 58.371 41.667 19.87 19.76 33.75 4.20
3917 5192 3.822996 GTCAAGATCTTCGACGACTTGA 58.177 45.455 21.57 21.57 42.59 3.02
3918 5193 3.849145 GTCAAGATCTTCGACGACTTGAG 59.151 47.826 23.87 8.11 44.42 3.02
3919 5194 3.119814 TCAAGATCTTCGACGACTTGAGG 60.120 47.826 21.57 7.62 40.86 3.86
3920 5195 2.712709 AGATCTTCGACGACTTGAGGA 58.287 47.619 0.00 0.00 0.00 3.71
3921 5196 2.420722 AGATCTTCGACGACTTGAGGAC 59.579 50.000 0.00 0.00 0.00 3.85
3922 5197 1.893544 TCTTCGACGACTTGAGGACT 58.106 50.000 0.00 0.00 0.00 3.85
3923 5198 2.228059 TCTTCGACGACTTGAGGACTT 58.772 47.619 0.00 0.00 0.00 3.01
3924 5199 2.031069 TCTTCGACGACTTGAGGACTTG 60.031 50.000 0.00 0.00 0.00 3.16
3925 5200 0.596577 TCGACGACTTGAGGACTTGG 59.403 55.000 0.00 0.00 0.00 3.61
3926 5201 0.388649 CGACGACTTGAGGACTTGGG 60.389 60.000 0.00 0.00 0.00 4.12
3927 5202 0.670854 GACGACTTGAGGACTTGGGC 60.671 60.000 0.00 0.00 0.00 5.36
3928 5203 1.122019 ACGACTTGAGGACTTGGGCT 61.122 55.000 0.00 0.00 0.00 5.19
3929 5204 0.895530 CGACTTGAGGACTTGGGCTA 59.104 55.000 0.00 0.00 0.00 3.93
3930 5205 1.404315 CGACTTGAGGACTTGGGCTAC 60.404 57.143 0.00 0.00 0.00 3.58
3931 5206 0.608640 ACTTGAGGACTTGGGCTACG 59.391 55.000 0.00 0.00 0.00 3.51
3932 5207 0.108138 CTTGAGGACTTGGGCTACGG 60.108 60.000 0.00 0.00 0.00 4.02
3933 5208 2.180159 TTGAGGACTTGGGCTACGGC 62.180 60.000 0.00 0.00 37.82 5.68
3934 5209 2.606519 AGGACTTGGGCTACGGCA 60.607 61.111 0.00 0.00 40.87 5.69
3935 5210 2.125106 GGACTTGGGCTACGGCAG 60.125 66.667 0.00 0.00 40.87 4.85
3936 5211 2.125106 GACTTGGGCTACGGCAGG 60.125 66.667 0.00 0.00 40.87 4.85
3937 5212 2.606519 ACTTGGGCTACGGCAGGA 60.607 61.111 0.00 0.00 40.87 3.86
3938 5213 2.187946 CTTGGGCTACGGCAGGAG 59.812 66.667 0.00 0.00 40.87 3.69
3939 5214 4.096003 TTGGGCTACGGCAGGAGC 62.096 66.667 13.32 13.32 40.87 4.70
3941 5216 3.866582 GGGCTACGGCAGGAGCAT 61.867 66.667 23.05 0.00 44.61 3.79
3942 5217 2.280457 GGCTACGGCAGGAGCATC 60.280 66.667 23.05 2.26 44.61 3.91
3943 5218 2.801631 GGCTACGGCAGGAGCATCT 61.802 63.158 23.05 0.00 44.61 2.90
3944 5219 1.593750 GCTACGGCAGGAGCATCTG 60.594 63.158 16.93 2.43 44.61 2.90
3945 5220 1.068753 CTACGGCAGGAGCATCTGG 59.931 63.158 8.13 0.00 44.61 3.86
3946 5221 1.381191 TACGGCAGGAGCATCTGGA 60.381 57.895 8.13 0.00 44.61 3.86
3947 5222 1.395045 TACGGCAGGAGCATCTGGAG 61.395 60.000 8.13 0.00 44.61 3.86
3948 5223 2.509916 GGCAGGAGCATCTGGAGG 59.490 66.667 8.13 0.00 44.61 4.30
3949 5224 2.068821 GGCAGGAGCATCTGGAGGA 61.069 63.158 8.13 0.00 44.61 3.71
3950 5225 1.630126 GGCAGGAGCATCTGGAGGAA 61.630 60.000 8.13 0.00 44.61 3.36
3951 5226 0.179051 GCAGGAGCATCTGGAGGAAG 60.179 60.000 8.13 0.00 41.58 3.46
3952 5227 1.493861 CAGGAGCATCTGGAGGAAGA 58.506 55.000 0.00 0.00 33.73 2.87
3953 5228 1.138661 CAGGAGCATCTGGAGGAAGAC 59.861 57.143 0.00 0.00 33.73 3.01
3954 5229 0.467804 GGAGCATCTGGAGGAAGACC 59.532 60.000 0.00 0.00 33.73 3.85
3955 5230 0.103937 GAGCATCTGGAGGAAGACCG 59.896 60.000 0.00 0.00 41.83 4.79
3956 5231 0.324738 AGCATCTGGAGGAAGACCGA 60.325 55.000 0.00 0.00 41.83 4.69
3957 5232 0.755686 GCATCTGGAGGAAGACCGAT 59.244 55.000 0.00 0.00 41.83 4.18
3958 5233 1.964223 GCATCTGGAGGAAGACCGATA 59.036 52.381 0.00 0.00 41.83 2.92
3959 5234 2.288518 GCATCTGGAGGAAGACCGATAC 60.289 54.545 0.00 0.00 41.83 2.24
3960 5235 2.068834 TCTGGAGGAAGACCGATACC 57.931 55.000 0.00 0.00 41.83 2.73
3961 5236 1.041437 CTGGAGGAAGACCGATACCC 58.959 60.000 0.00 0.00 41.83 3.69
3962 5237 0.754217 TGGAGGAAGACCGATACCCG 60.754 60.000 0.00 0.00 41.83 5.28
3963 5238 0.466922 GGAGGAAGACCGATACCCGA 60.467 60.000 0.00 0.00 41.76 5.14
3964 5239 0.953003 GAGGAAGACCGATACCCGAG 59.047 60.000 0.00 0.00 41.76 4.63
3965 5240 0.258194 AGGAAGACCGATACCCGAGT 59.742 55.000 0.00 0.00 41.76 4.18
3966 5241 1.492176 AGGAAGACCGATACCCGAGTA 59.508 52.381 0.00 0.00 41.76 2.59
3967 5242 1.878734 GGAAGACCGATACCCGAGTAG 59.121 57.143 0.00 0.00 41.76 2.57
3968 5243 2.570135 GAAGACCGATACCCGAGTAGT 58.430 52.381 0.00 0.00 41.76 2.73
3969 5244 3.495100 GGAAGACCGATACCCGAGTAGTA 60.495 52.174 0.00 0.00 41.76 1.82
3970 5245 3.399440 AGACCGATACCCGAGTAGTAG 57.601 52.381 0.00 0.00 41.76 2.57
3971 5246 2.968574 AGACCGATACCCGAGTAGTAGA 59.031 50.000 0.00 0.00 41.76 2.59
3972 5247 3.006752 AGACCGATACCCGAGTAGTAGAG 59.993 52.174 0.00 0.00 41.76 2.43
3973 5248 2.703007 ACCGATACCCGAGTAGTAGAGT 59.297 50.000 0.00 0.00 41.76 3.24
3974 5249 3.898123 ACCGATACCCGAGTAGTAGAGTA 59.102 47.826 0.00 0.00 41.76 2.59
3975 5250 4.021544 ACCGATACCCGAGTAGTAGAGTAG 60.022 50.000 0.00 0.00 41.76 2.57
3976 5251 4.021544 CCGATACCCGAGTAGTAGAGTAGT 60.022 50.000 0.00 0.00 41.76 2.73
3977 5252 5.184096 CCGATACCCGAGTAGTAGAGTAGTA 59.816 48.000 0.00 0.00 41.76 1.82
3978 5253 6.127479 CCGATACCCGAGTAGTAGAGTAGTAT 60.127 46.154 0.00 0.00 41.76 2.12
3979 5254 7.319646 CGATACCCGAGTAGTAGAGTAGTATT 58.680 42.308 0.00 0.00 41.76 1.89
3980 5255 7.816995 CGATACCCGAGTAGTAGAGTAGTATTT 59.183 40.741 0.00 0.00 41.76 1.40
3983 5258 7.449247 ACCCGAGTAGTAGAGTAGTATTTAGG 58.551 42.308 0.00 0.00 0.00 2.69
3984 5259 7.291182 ACCCGAGTAGTAGAGTAGTATTTAGGA 59.709 40.741 0.00 0.00 0.00 2.94
3985 5260 7.818930 CCCGAGTAGTAGAGTAGTATTTAGGAG 59.181 44.444 0.00 0.00 0.00 3.69
3986 5261 8.367156 CCGAGTAGTAGAGTAGTATTTAGGAGT 58.633 40.741 0.00 0.00 0.00 3.85
3987 5262 9.195411 CGAGTAGTAGAGTAGTATTTAGGAGTG 57.805 40.741 0.00 0.00 0.00 3.51
3988 5263 9.492973 GAGTAGTAGAGTAGTATTTAGGAGTGG 57.507 40.741 0.00 0.00 0.00 4.00
3989 5264 9.223291 AGTAGTAGAGTAGTATTTAGGAGTGGA 57.777 37.037 0.00 0.00 0.00 4.02
3990 5265 9.492973 GTAGTAGAGTAGTATTTAGGAGTGGAG 57.507 40.741 0.00 0.00 0.00 3.86
3991 5266 8.104838 AGTAGAGTAGTATTTAGGAGTGGAGT 57.895 38.462 0.00 0.00 0.00 3.85
3992 5267 7.994334 AGTAGAGTAGTATTTAGGAGTGGAGTG 59.006 40.741 0.00 0.00 0.00 3.51
3993 5268 6.130569 AGAGTAGTATTTAGGAGTGGAGTGG 58.869 44.000 0.00 0.00 0.00 4.00
3994 5269 6.068971 AGAGTAGTATTTAGGAGTGGAGTGGA 60.069 42.308 0.00 0.00 0.00 4.02
3995 5270 6.130569 AGTAGTATTTAGGAGTGGAGTGGAG 58.869 44.000 0.00 0.00 0.00 3.86
3996 5271 4.290942 AGTATTTAGGAGTGGAGTGGAGG 58.709 47.826 0.00 0.00 0.00 4.30
3997 5272 2.715763 TTTAGGAGTGGAGTGGAGGT 57.284 50.000 0.00 0.00 0.00 3.85
3998 5273 2.715763 TTAGGAGTGGAGTGGAGGTT 57.284 50.000 0.00 0.00 0.00 3.50
3999 5274 2.715763 TAGGAGTGGAGTGGAGGTTT 57.284 50.000 0.00 0.00 0.00 3.27
4000 5275 1.059913 AGGAGTGGAGTGGAGGTTTG 58.940 55.000 0.00 0.00 0.00 2.93
4001 5276 0.036875 GGAGTGGAGTGGAGGTTTGG 59.963 60.000 0.00 0.00 0.00 3.28
4002 5277 0.765510 GAGTGGAGTGGAGGTTTGGT 59.234 55.000 0.00 0.00 0.00 3.67
4003 5278 1.143073 GAGTGGAGTGGAGGTTTGGTT 59.857 52.381 0.00 0.00 0.00 3.67
4004 5279 1.133792 AGTGGAGTGGAGGTTTGGTTG 60.134 52.381 0.00 0.00 0.00 3.77
4005 5280 0.184933 TGGAGTGGAGGTTTGGTTGG 59.815 55.000 0.00 0.00 0.00 3.77
4006 5281 0.539669 GGAGTGGAGGTTTGGTTGGG 60.540 60.000 0.00 0.00 0.00 4.12
4007 5282 0.539669 GAGTGGAGGTTTGGTTGGGG 60.540 60.000 0.00 0.00 0.00 4.96
4008 5283 1.231928 GTGGAGGTTTGGTTGGGGT 59.768 57.895 0.00 0.00 0.00 4.95
4009 5284 0.826256 GTGGAGGTTTGGTTGGGGTC 60.826 60.000 0.00 0.00 0.00 4.46
4010 5285 1.602605 GGAGGTTTGGTTGGGGTCG 60.603 63.158 0.00 0.00 0.00 4.79
4011 5286 1.602605 GAGGTTTGGTTGGGGTCGG 60.603 63.158 0.00 0.00 0.00 4.79
4012 5287 3.299977 GGTTTGGTTGGGGTCGGC 61.300 66.667 0.00 0.00 0.00 5.54
4013 5288 2.203437 GTTTGGTTGGGGTCGGCT 60.203 61.111 0.00 0.00 0.00 5.52
4014 5289 1.830847 GTTTGGTTGGGGTCGGCTT 60.831 57.895 0.00 0.00 0.00 4.35
4015 5290 1.830408 TTTGGTTGGGGTCGGCTTG 60.830 57.895 0.00 0.00 0.00 4.01
4016 5291 2.575455 TTTGGTTGGGGTCGGCTTGT 62.575 55.000 0.00 0.00 0.00 3.16
4017 5292 2.983592 GGTTGGGGTCGGCTTGTG 60.984 66.667 0.00 0.00 0.00 3.33
4018 5293 2.112297 GTTGGGGTCGGCTTGTGA 59.888 61.111 0.00 0.00 0.00 3.58
4019 5294 2.112297 TTGGGGTCGGCTTGTGAC 59.888 61.111 0.00 0.00 35.60 3.67
4024 5299 4.693532 GTCGGCTTGTGACCATCA 57.306 55.556 0.00 0.00 0.00 3.07
4025 5300 2.927004 GTCGGCTTGTGACCATCAA 58.073 52.632 0.00 0.00 0.00 2.57
4026 5301 0.517316 GTCGGCTTGTGACCATCAAC 59.483 55.000 0.00 0.00 0.00 3.18
4027 5302 0.396435 TCGGCTTGTGACCATCAACT 59.604 50.000 0.00 0.00 0.00 3.16
4028 5303 1.621317 TCGGCTTGTGACCATCAACTA 59.379 47.619 0.00 0.00 0.00 2.24
4029 5304 2.002586 CGGCTTGTGACCATCAACTAG 58.997 52.381 0.00 0.00 0.00 2.57
4030 5305 1.740025 GGCTTGTGACCATCAACTAGC 59.260 52.381 0.00 0.00 31.50 3.42
4031 5306 2.616510 GGCTTGTGACCATCAACTAGCT 60.617 50.000 8.65 0.00 32.21 3.32
4032 5307 2.675348 GCTTGTGACCATCAACTAGCTC 59.325 50.000 0.00 0.00 30.58 4.09
4033 5308 3.866066 GCTTGTGACCATCAACTAGCTCA 60.866 47.826 0.00 0.00 30.58 4.26
4034 5309 4.318332 CTTGTGACCATCAACTAGCTCAA 58.682 43.478 0.00 0.00 0.00 3.02
4035 5310 4.558226 TGTGACCATCAACTAGCTCAAT 57.442 40.909 0.00 0.00 0.00 2.57
4036 5311 4.256110 TGTGACCATCAACTAGCTCAATG 58.744 43.478 0.00 0.00 0.00 2.82
4037 5312 4.256920 GTGACCATCAACTAGCTCAATGT 58.743 43.478 0.00 0.00 0.00 2.71
4038 5313 5.046663 TGTGACCATCAACTAGCTCAATGTA 60.047 40.000 0.00 0.00 0.00 2.29
4039 5314 5.874810 GTGACCATCAACTAGCTCAATGTAA 59.125 40.000 0.00 0.00 0.00 2.41
4040 5315 6.540189 GTGACCATCAACTAGCTCAATGTAAT 59.460 38.462 0.00 0.00 0.00 1.89
4041 5316 7.710907 GTGACCATCAACTAGCTCAATGTAATA 59.289 37.037 0.00 0.00 0.00 0.98
4042 5317 8.264347 TGACCATCAACTAGCTCAATGTAATAA 58.736 33.333 0.00 0.00 0.00 1.40
4043 5318 8.438676 ACCATCAACTAGCTCAATGTAATAAC 57.561 34.615 0.00 0.00 0.00 1.89
4044 5319 8.267894 ACCATCAACTAGCTCAATGTAATAACT 58.732 33.333 0.00 0.00 0.00 2.24
4045 5320 8.768955 CCATCAACTAGCTCAATGTAATAACTC 58.231 37.037 0.00 0.00 0.00 3.01
4046 5321 9.539825 CATCAACTAGCTCAATGTAATAACTCT 57.460 33.333 0.00 0.00 0.00 3.24
4080 5355 8.980481 TTTTTCTCCCTTCTATAAAGCTATGG 57.020 34.615 0.00 0.00 0.00 2.74
4081 5356 7.691993 TTTCTCCCTTCTATAAAGCTATGGT 57.308 36.000 0.00 0.00 0.00 3.55
4082 5357 8.792830 TTTCTCCCTTCTATAAAGCTATGGTA 57.207 34.615 0.00 0.00 0.00 3.25
4083 5358 7.778185 TCTCCCTTCTATAAAGCTATGGTAC 57.222 40.000 0.00 0.00 0.00 3.34
4084 5359 6.433404 TCTCCCTTCTATAAAGCTATGGTACG 59.567 42.308 0.00 0.00 0.00 3.67
4085 5360 5.047519 TCCCTTCTATAAAGCTATGGTACGC 60.048 44.000 0.00 0.00 0.00 4.42
4086 5361 5.169295 CCTTCTATAAAGCTATGGTACGCC 58.831 45.833 0.00 0.00 0.00 5.68
4087 5362 5.047235 CCTTCTATAAAGCTATGGTACGCCT 60.047 44.000 0.00 0.00 35.27 5.52
4088 5363 6.415206 TTCTATAAAGCTATGGTACGCCTT 57.585 37.500 0.00 0.00 35.27 4.35
4089 5364 6.415206 TCTATAAAGCTATGGTACGCCTTT 57.585 37.500 0.00 0.00 35.27 3.11
4090 5365 6.220930 TCTATAAAGCTATGGTACGCCTTTG 58.779 40.000 0.00 0.00 35.27 2.77
4091 5366 2.038387 AAGCTATGGTACGCCTTTGG 57.962 50.000 0.00 0.00 35.27 3.28
4092 5367 0.463833 AGCTATGGTACGCCTTTGGC 60.464 55.000 0.00 0.00 46.75 4.52
4101 5376 2.818274 GCCTTTGGCGTACCCTCG 60.818 66.667 0.00 0.00 39.62 4.63
4102 5377 2.975536 CCTTTGGCGTACCCTCGA 59.024 61.111 2.61 0.00 33.59 4.04
4103 5378 1.294138 CCTTTGGCGTACCCTCGAA 59.706 57.895 2.61 0.00 33.59 3.71
4104 5379 0.320946 CCTTTGGCGTACCCTCGAAA 60.321 55.000 2.61 0.00 33.59 3.46
4105 5380 1.076332 CTTTGGCGTACCCTCGAAAG 58.924 55.000 2.61 1.30 33.59 2.62
4106 5381 0.680618 TTTGGCGTACCCTCGAAAGA 59.319 50.000 2.61 0.00 39.12 2.52
4107 5382 0.680618 TTGGCGTACCCTCGAAAGAA 59.319 50.000 2.61 0.00 41.32 2.52
4108 5383 0.680618 TGGCGTACCCTCGAAAGAAA 59.319 50.000 2.61 0.00 41.32 2.52
4109 5384 1.070445 TGGCGTACCCTCGAAAGAAAA 59.930 47.619 2.61 0.00 41.32 2.29
4110 5385 2.145536 GGCGTACCCTCGAAAGAAAAA 58.854 47.619 0.00 0.00 41.32 1.94
4132 5407 4.489679 AAAGAACGTCAAGATCTTTGCC 57.510 40.909 4.86 0.00 46.05 4.52
4133 5408 3.409026 AGAACGTCAAGATCTTTGCCT 57.591 42.857 4.86 0.00 0.00 4.75
4134 5409 3.070018 AGAACGTCAAGATCTTTGCCTG 58.930 45.455 4.86 0.00 0.00 4.85
4135 5410 1.160137 ACGTCAAGATCTTTGCCTGC 58.840 50.000 4.86 0.00 0.00 4.85
4136 5411 1.271054 ACGTCAAGATCTTTGCCTGCT 60.271 47.619 4.86 0.00 0.00 4.24
4137 5412 1.808945 CGTCAAGATCTTTGCCTGCTT 59.191 47.619 4.86 0.00 0.00 3.91
4138 5413 2.413765 CGTCAAGATCTTTGCCTGCTTG 60.414 50.000 4.86 0.00 37.79 4.01
4139 5414 1.542915 TCAAGATCTTTGCCTGCTTGC 59.457 47.619 4.86 0.00 36.72 4.01
4140 5415 1.544691 CAAGATCTTTGCCTGCTTGCT 59.455 47.619 4.86 0.00 30.92 3.91
4141 5416 1.920610 AGATCTTTGCCTGCTTGCTT 58.079 45.000 0.00 0.00 0.00 3.91
4142 5417 2.245582 AGATCTTTGCCTGCTTGCTTT 58.754 42.857 0.00 0.00 0.00 3.51
4143 5418 2.230750 AGATCTTTGCCTGCTTGCTTTC 59.769 45.455 0.00 0.00 0.00 2.62
4144 5419 0.675633 TCTTTGCCTGCTTGCTTTCC 59.324 50.000 0.00 0.00 0.00 3.13
4145 5420 0.390124 CTTTGCCTGCTTGCTTTCCA 59.610 50.000 0.00 0.00 0.00 3.53
4146 5421 1.001633 CTTTGCCTGCTTGCTTTCCAT 59.998 47.619 0.00 0.00 0.00 3.41
4147 5422 0.604578 TTGCCTGCTTGCTTTCCATC 59.395 50.000 0.00 0.00 0.00 3.51
4148 5423 0.540133 TGCCTGCTTGCTTTCCATCA 60.540 50.000 0.00 0.00 0.00 3.07
4149 5424 0.604578 GCCTGCTTGCTTTCCATCAA 59.395 50.000 0.00 0.00 0.00 2.57
4150 5425 1.670967 GCCTGCTTGCTTTCCATCAAC 60.671 52.381 0.00 0.00 0.00 3.18
4151 5426 1.614903 CCTGCTTGCTTTCCATCAACA 59.385 47.619 0.00 0.00 0.00 3.33
4152 5427 2.232941 CCTGCTTGCTTTCCATCAACAT 59.767 45.455 0.00 0.00 0.00 2.71
4153 5428 3.306502 CCTGCTTGCTTTCCATCAACATT 60.307 43.478 0.00 0.00 0.00 2.71
4154 5429 3.655486 TGCTTGCTTTCCATCAACATTG 58.345 40.909 0.00 0.00 0.00 2.82
4155 5430 2.414138 GCTTGCTTTCCATCAACATTGC 59.586 45.455 0.00 0.00 0.00 3.56
4156 5431 3.655486 CTTGCTTTCCATCAACATTGCA 58.345 40.909 0.00 0.00 0.00 4.08
4157 5432 3.965379 TGCTTTCCATCAACATTGCAT 57.035 38.095 0.00 0.00 0.00 3.96
4158 5433 4.274602 TGCTTTCCATCAACATTGCATT 57.725 36.364 0.00 0.00 0.00 3.56
4159 5434 3.997681 TGCTTTCCATCAACATTGCATTG 59.002 39.130 7.04 7.04 0.00 2.82
4160 5435 4.247258 GCTTTCCATCAACATTGCATTGA 58.753 39.130 15.20 9.51 40.25 2.57
4161 5436 4.873827 GCTTTCCATCAACATTGCATTGAT 59.126 37.500 15.20 11.40 45.57 2.57
4162 5437 5.353123 GCTTTCCATCAACATTGCATTGATT 59.647 36.000 15.20 3.62 42.81 2.57
4163 5438 6.456449 GCTTTCCATCAACATTGCATTGATTC 60.456 38.462 15.20 0.00 42.81 2.52
4164 5439 5.925506 TCCATCAACATTGCATTGATTCT 57.074 34.783 15.20 0.00 42.81 2.40
4165 5440 5.656480 TCCATCAACATTGCATTGATTCTG 58.344 37.500 15.20 4.92 42.81 3.02
4166 5441 4.270084 CCATCAACATTGCATTGATTCTGC 59.730 41.667 15.20 0.00 42.81 4.26
4167 5442 3.852286 TCAACATTGCATTGATTCTGCC 58.148 40.909 15.20 0.00 38.89 4.85
4168 5443 3.258622 TCAACATTGCATTGATTCTGCCA 59.741 39.130 15.20 0.00 38.89 4.92
4169 5444 3.965379 ACATTGCATTGATTCTGCCAA 57.035 38.095 15.20 0.00 38.89 4.52
4170 5445 4.274602 ACATTGCATTGATTCTGCCAAA 57.725 36.364 15.20 0.00 38.89 3.28
4171 5446 4.643463 ACATTGCATTGATTCTGCCAAAA 58.357 34.783 15.20 0.00 38.89 2.44
4172 5447 5.250200 ACATTGCATTGATTCTGCCAAAAT 58.750 33.333 15.20 0.00 38.89 1.82
4173 5448 5.708230 ACATTGCATTGATTCTGCCAAAATT 59.292 32.000 15.20 0.00 38.89 1.82
4174 5449 6.207810 ACATTGCATTGATTCTGCCAAAATTT 59.792 30.769 15.20 0.00 38.89 1.82
4175 5450 6.636562 TTGCATTGATTCTGCCAAAATTTT 57.363 29.167 0.00 0.00 38.89 1.82
4176 5451 6.003234 TGCATTGATTCTGCCAAAATTTTG 57.997 33.333 21.65 21.65 38.89 2.44
4190 5465 6.407475 CAAAATTTTGGTTGATCGGGAATC 57.593 37.500 21.00 0.00 34.59 2.52
4191 5466 6.165577 CAAAATTTTGGTTGATCGGGAATCT 58.834 36.000 21.00 0.00 33.64 2.40
4192 5467 4.989279 ATTTTGGTTGATCGGGAATCTG 57.011 40.909 0.00 0.00 35.24 2.90
4193 5468 3.712016 TTTGGTTGATCGGGAATCTGA 57.288 42.857 0.00 0.00 35.24 3.27
4194 5469 2.988010 TGGTTGATCGGGAATCTGAG 57.012 50.000 0.00 0.00 35.24 3.35
4195 5470 1.134401 TGGTTGATCGGGAATCTGAGC 60.134 52.381 0.00 0.00 35.24 4.26
4196 5471 1.139853 GGTTGATCGGGAATCTGAGCT 59.860 52.381 0.00 0.00 35.80 4.09
4197 5472 2.365617 GGTTGATCGGGAATCTGAGCTA 59.634 50.000 0.00 0.00 35.80 3.32
4198 5473 3.007398 GGTTGATCGGGAATCTGAGCTAT 59.993 47.826 0.00 0.00 35.80 2.97
4199 5474 3.949842 TGATCGGGAATCTGAGCTATG 57.050 47.619 0.00 0.00 35.80 2.23
4200 5475 3.234353 TGATCGGGAATCTGAGCTATGT 58.766 45.455 0.00 0.00 35.80 2.29
4201 5476 3.256879 TGATCGGGAATCTGAGCTATGTC 59.743 47.826 0.00 0.00 35.80 3.06
4202 5477 2.666317 TCGGGAATCTGAGCTATGTCA 58.334 47.619 0.00 0.00 0.00 3.58
4203 5478 3.234353 TCGGGAATCTGAGCTATGTCAT 58.766 45.455 0.00 0.00 0.00 3.06
4204 5479 3.006217 TCGGGAATCTGAGCTATGTCATG 59.994 47.826 0.00 0.00 0.00 3.07
4205 5480 3.244009 CGGGAATCTGAGCTATGTCATGT 60.244 47.826 0.00 0.00 0.00 3.21
4206 5481 4.063689 GGGAATCTGAGCTATGTCATGTG 58.936 47.826 0.00 0.00 0.00 3.21
4207 5482 4.444022 GGGAATCTGAGCTATGTCATGTGT 60.444 45.833 0.00 0.00 0.00 3.72
4208 5483 4.749099 GGAATCTGAGCTATGTCATGTGTC 59.251 45.833 0.00 0.00 0.00 3.67
4209 5484 3.808466 TCTGAGCTATGTCATGTGTCC 57.192 47.619 0.00 0.00 0.00 4.02
4210 5485 3.099141 TCTGAGCTATGTCATGTGTCCA 58.901 45.455 0.00 0.00 0.00 4.02
4211 5486 3.708121 TCTGAGCTATGTCATGTGTCCAT 59.292 43.478 0.00 0.00 0.00 3.41
4212 5487 4.895297 TCTGAGCTATGTCATGTGTCCATA 59.105 41.667 0.00 0.00 0.00 2.74
4213 5488 5.541484 TCTGAGCTATGTCATGTGTCCATAT 59.459 40.000 0.00 0.00 0.00 1.78
4214 5489 5.544650 TGAGCTATGTCATGTGTCCATATG 58.455 41.667 0.00 0.00 0.00 1.78
4215 5490 5.305128 TGAGCTATGTCATGTGTCCATATGA 59.695 40.000 3.65 2.97 36.74 2.15
4221 5496 4.141233 TCATGTGTCCATATGACTGTGG 57.859 45.455 3.65 0.00 44.75 4.17
4222 5497 3.519107 TCATGTGTCCATATGACTGTGGT 59.481 43.478 3.65 0.00 44.75 4.16
4223 5498 3.610040 TGTGTCCATATGACTGTGGTC 57.390 47.619 3.65 0.00 44.75 4.02
4260 5535 3.324846 GCATACCTATGATGTCACCCTCA 59.675 47.826 0.00 0.00 35.75 3.86
4267 5542 3.634397 TGATGTCACCCTCATTTCTCC 57.366 47.619 0.00 0.00 0.00 3.71
4268 5543 2.912295 TGATGTCACCCTCATTTCTCCA 59.088 45.455 0.00 0.00 0.00 3.86
4278 5746 3.084786 CTCATTTCTCCACCCAAAGGAC 58.915 50.000 0.00 0.00 36.73 3.85
4285 5753 2.280592 ACCCAAAGGACGTGTCGC 60.281 61.111 0.00 0.00 36.73 5.19
4309 5777 3.511934 TCCTCCAGTCTTAACTTCTCAGC 59.488 47.826 0.00 0.00 31.71 4.26
4311 5779 4.081198 CCTCCAGTCTTAACTTCTCAGCAT 60.081 45.833 0.00 0.00 31.71 3.79
4333 5802 1.806542 TCAAGATCTTTGCTCGGTTGC 59.193 47.619 4.86 0.00 0.00 4.17
4334 5803 0.798776 AAGATCTTTGCTCGGTTGCG 59.201 50.000 0.88 0.00 35.36 4.85
4383 5852 4.584874 CAAAATTTGGGATTGTAACCCCC 58.415 43.478 0.00 0.00 46.21 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
1 2 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
4 5 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
5 6 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
6 7 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
7 8 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
8 9 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
9 10 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
10 11 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
12 13 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
13 14 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
14 15 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
15 16 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
16 17 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
17 18 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
18 19 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
19 20 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
20 21 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
21 22 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
22 23 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
23 24 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
24 25 6.313905 AGAAACAACAACAACAACAACAACAA 59.686 30.769 0.00 0.00 0.00 2.83
25 26 5.812642 AGAAACAACAACAACAACAACAACA 59.187 32.000 0.00 0.00 0.00 3.33
26 27 6.019479 TGAGAAACAACAACAACAACAACAAC 60.019 34.615 0.00 0.00 0.00 3.32
27 28 6.019479 GTGAGAAACAACAACAACAACAACAA 60.019 34.615 0.00 0.00 0.00 2.83
28 29 5.460419 GTGAGAAACAACAACAACAACAACA 59.540 36.000 0.00 0.00 0.00 3.33
29 30 5.460419 TGTGAGAAACAACAACAACAACAAC 59.540 36.000 0.00 0.00 35.24 3.32
30 31 5.592054 TGTGAGAAACAACAACAACAACAA 58.408 33.333 0.00 0.00 35.24 2.83
31 32 5.188327 TGTGAGAAACAACAACAACAACA 57.812 34.783 0.00 0.00 35.24 3.33
32 33 7.009174 CCTTATGTGAGAAACAACAACAACAAC 59.991 37.037 0.00 0.00 43.61 3.32
33 34 7.032580 CCTTATGTGAGAAACAACAACAACAA 58.967 34.615 0.00 0.00 43.61 2.83
34 35 6.151985 ACCTTATGTGAGAAACAACAACAACA 59.848 34.615 0.00 0.00 43.61 3.33
35 36 6.560711 ACCTTATGTGAGAAACAACAACAAC 58.439 36.000 0.00 0.00 43.61 3.32
36 37 6.767524 ACCTTATGTGAGAAACAACAACAA 57.232 33.333 0.00 0.00 43.61 2.83
37 38 6.767524 AACCTTATGTGAGAAACAACAACA 57.232 33.333 0.00 0.00 43.61 3.33
38 39 8.474006 AAAAACCTTATGTGAGAAACAACAAC 57.526 30.769 0.00 0.00 43.61 3.32
40 41 9.575783 GTTAAAAACCTTATGTGAGAAACAACA 57.424 29.630 0.00 0.00 43.61 3.33
41 42 8.739461 CGTTAAAAACCTTATGTGAGAAACAAC 58.261 33.333 0.00 0.00 43.61 3.32
42 43 8.675504 TCGTTAAAAACCTTATGTGAGAAACAA 58.324 29.630 0.00 0.00 43.61 2.83
43 44 8.211116 TCGTTAAAAACCTTATGTGAGAAACA 57.789 30.769 0.00 0.00 44.79 2.83
44 45 7.801783 CCTCGTTAAAAACCTTATGTGAGAAAC 59.198 37.037 0.00 0.00 0.00 2.78
135 138 1.131883 GCAAAGCATGTGCCTCACTAG 59.868 52.381 0.57 0.00 45.98 2.57
166 169 3.882670 ACCCCCACCCTCCCTTGA 61.883 66.667 0.00 0.00 0.00 3.02
173 176 1.076513 GTTTCATAACACCCCCACCCT 59.923 52.381 0.00 0.00 34.31 4.34
175 178 1.203075 TGGTTTCATAACACCCCCACC 60.203 52.381 0.00 0.00 35.92 4.61
176 179 1.890489 GTGGTTTCATAACACCCCCAC 59.110 52.381 0.00 0.00 35.92 4.61
177 180 1.545875 CGTGGTTTCATAACACCCCCA 60.546 52.381 0.00 0.00 35.92 4.96
178 181 1.170442 CGTGGTTTCATAACACCCCC 58.830 55.000 0.00 0.00 35.92 5.40
179 182 1.538075 CACGTGGTTTCATAACACCCC 59.462 52.381 7.95 0.00 35.92 4.95
180 183 2.223745 ACACGTGGTTTCATAACACCC 58.776 47.619 21.57 0.00 35.92 4.61
181 184 3.974871 AACACGTGGTTTCATAACACC 57.025 42.857 21.57 0.00 35.82 4.16
245 248 8.964476 TTCCTTACATATGAAGTTTGATCCTC 57.036 34.615 10.38 0.00 0.00 3.71
376 381 4.973168 TGCTAGACTTGTTGGTCTTCAAT 58.027 39.130 0.00 0.00 43.14 2.57
377 382 4.415881 TGCTAGACTTGTTGGTCTTCAA 57.584 40.909 0.00 0.00 43.14 2.69
717 858 9.412460 AGGAATATATTTGCAGAGAACAATGAA 57.588 29.630 0.00 0.00 0.00 2.57
730 871 7.817418 TTAAGGGTGTCAGGAATATATTTGC 57.183 36.000 0.00 0.00 0.00 3.68
738 879 4.770795 CGAGAATTAAGGGTGTCAGGAAT 58.229 43.478 0.00 0.00 0.00 3.01
740 881 2.093658 GCGAGAATTAAGGGTGTCAGGA 60.094 50.000 0.00 0.00 0.00 3.86
741 882 2.280628 GCGAGAATTAAGGGTGTCAGG 58.719 52.381 0.00 0.00 0.00 3.86
742 883 1.927174 CGCGAGAATTAAGGGTGTCAG 59.073 52.381 0.00 0.00 0.00 3.51
743 884 1.274167 ACGCGAGAATTAAGGGTGTCA 59.726 47.619 15.93 0.00 0.00 3.58
785 947 1.278238 CACGACTTGCGATTCTACCC 58.722 55.000 0.00 0.00 44.57 3.69
817 979 3.682292 GAGTCGTGGATGGGTGGGC 62.682 68.421 0.00 0.00 0.00 5.36
843 1005 2.921754 CGGATTCCGTAGTTTCAGTCAC 59.078 50.000 17.08 0.00 42.73 3.67
885 1047 4.021280 GTCGGGTCTTTTCTACTTCCTCTT 60.021 45.833 0.00 0.00 0.00 2.85
886 1048 3.510753 GTCGGGTCTTTTCTACTTCCTCT 59.489 47.826 0.00 0.00 0.00 3.69
921 1083 3.807538 CATGTGCCCACGCTGCTC 61.808 66.667 0.00 0.00 35.36 4.26
932 1094 3.181493 CCTGATTTTACTCTGCCATGTGC 60.181 47.826 0.00 0.00 41.77 4.57
991 1157 3.614698 TTTTTGGGCGCTGGGCTG 61.615 61.111 16.51 0.00 42.94 4.85
1595 1776 3.925090 CCGCGGTGGTAGATCCCC 61.925 72.222 19.50 0.00 34.77 4.81
1698 1897 3.467226 GAAGACGCCCGGGATGGA 61.467 66.667 29.31 0.00 42.00 3.41
2019 2218 2.661866 GCTGGTGTCGCAGTCGTT 60.662 61.111 0.00 0.00 36.96 3.85
2057 2256 1.030457 CCTTGTAGAGGCCGTCGTAT 58.970 55.000 0.00 0.00 39.09 3.06
2093 2292 3.646715 CCTGACTTTCCGGGGCCA 61.647 66.667 4.39 0.00 0.00 5.36
2203 2402 1.874019 CGGATGTTGGAGTCGAGCG 60.874 63.158 0.00 0.00 0.00 5.03
2304 2506 2.485795 CGAAGCCGAGGGGAGAGAG 61.486 68.421 0.00 0.00 38.22 3.20
2425 2627 3.044059 GCGCAACTGCCAGATGACC 62.044 63.158 6.11 0.00 37.91 4.02
2438 2640 4.617520 TTCCTCACGCAGGCGCAA 62.618 61.111 14.32 0.82 43.08 4.85
2492 2694 2.182030 CTTCCCCTGACGAGCGTC 59.818 66.667 15.49 15.49 44.77 5.19
2609 2811 0.467384 CCCAATCTGTCTGCCTCGAT 59.533 55.000 0.00 0.00 0.00 3.59
2770 2972 0.108138 CCATCTCGCCGGAAACTTCT 60.108 55.000 5.05 0.00 0.00 2.85
2977 3179 4.472702 GAGGGTACGACTCGTTGC 57.527 61.111 9.84 3.52 41.54 4.17
3064 3266 3.144506 CCAGTCAACTTTGCAGATCACT 58.855 45.455 0.00 0.00 0.00 3.41
3108 3310 2.072298 GCTTCAAGATGCAGTCGAACT 58.928 47.619 0.00 0.00 0.00 3.01
3112 3314 1.718396 TGAGCTTCAAGATGCAGTCG 58.282 50.000 10.08 0.00 34.33 4.18
3113 3315 4.260702 GCTATTGAGCTTCAAGATGCAGTC 60.261 45.833 10.08 1.66 45.98 3.51
3213 3415 4.027674 TGTGCAAGTAAGCCCTGAATAA 57.972 40.909 0.00 0.00 0.00 1.40
3214 3416 3.712016 TGTGCAAGTAAGCCCTGAATA 57.288 42.857 0.00 0.00 0.00 1.75
3215 3417 2.584835 TGTGCAAGTAAGCCCTGAAT 57.415 45.000 0.00 0.00 0.00 2.57
3216 3418 2.229792 CTTGTGCAAGTAAGCCCTGAA 58.770 47.619 3.91 0.00 33.87 3.02
3217 3419 1.896220 CTTGTGCAAGTAAGCCCTGA 58.104 50.000 3.91 0.00 33.87 3.86
3290 3545 5.923114 GCGATAGAGTTGCTGAATATGAAGA 59.077 40.000 0.00 0.00 39.76 2.87
3341 3596 4.641541 CCATGTTATGAGATGCAAGGTTCA 59.358 41.667 0.00 0.00 0.00 3.18
3416 3861 7.116376 ACTCACTTCAATGTACATTAAGTGACG 59.884 37.037 34.73 31.79 40.79 4.35
3421 3866 9.639601 TCACTACTCACTTCAATGTACATTAAG 57.360 33.333 20.39 21.82 0.00 1.85
3429 3874 6.650427 TGTACTCACTACTCACTTCAATGT 57.350 37.500 0.00 0.00 0.00 2.71
3444 3889 3.933332 GGCCTGAAGTTGTATGTACTCAC 59.067 47.826 0.00 0.00 0.00 3.51
3446 3891 4.473477 AGGCCTGAAGTTGTATGTACTC 57.527 45.455 3.11 0.00 0.00 2.59
3448 3893 5.340439 ACTAGGCCTGAAGTTGTATGTAC 57.660 43.478 17.99 0.00 0.00 2.90
3450 3895 4.910458 AACTAGGCCTGAAGTTGTATGT 57.090 40.909 18.32 0.00 34.70 2.29
3454 3899 2.174854 ACCAAACTAGGCCTGAAGTTGT 59.825 45.455 19.46 12.18 36.12 3.32
3456 3901 4.141344 TGTTACCAAACTAGGCCTGAAGTT 60.141 41.667 17.99 15.73 37.54 2.66
3458 3903 4.015872 TGTTACCAAACTAGGCCTGAAG 57.984 45.455 17.99 8.52 36.51 3.02
3517 4785 4.771577 TCATTGCCCACACAATCAAATACT 59.228 37.500 0.00 0.00 38.19 2.12
3529 4797 2.290641 ACGAAGGTATTCATTGCCCACA 60.291 45.455 0.00 0.00 34.94 4.17
3591 4859 0.476611 AGAAAGAGGCCTTGACCCCT 60.477 55.000 6.77 0.00 31.91 4.79
3598 4866 6.655425 GTGTAAGTATTTGAGAAAGAGGCCTT 59.345 38.462 6.77 0.00 0.00 4.35
3602 4870 9.653287 TGTATGTGTAAGTATTTGAGAAAGAGG 57.347 33.333 0.00 0.00 0.00 3.69
3683 4957 3.953612 TCAAATTGAAGAGTGTTGCACCT 59.046 39.130 0.00 0.00 34.49 4.00
3684 4958 4.305989 TCAAATTGAAGAGTGTTGCACC 57.694 40.909 0.00 0.00 34.49 5.01
3685 4959 5.570589 GCTATCAAATTGAAGAGTGTTGCAC 59.429 40.000 0.00 0.00 34.10 4.57
3686 4960 5.241285 TGCTATCAAATTGAAGAGTGTTGCA 59.759 36.000 0.00 0.00 0.00 4.08
3687 4961 5.702865 TGCTATCAAATTGAAGAGTGTTGC 58.297 37.500 0.00 0.00 0.00 4.17
3688 4962 7.759465 AGATGCTATCAAATTGAAGAGTGTTG 58.241 34.615 0.00 0.00 0.00 3.33
3689 4963 7.934855 AGATGCTATCAAATTGAAGAGTGTT 57.065 32.000 0.00 0.00 0.00 3.32
3694 4968 8.797350 TTCTCAAGATGCTATCAAATTGAAGA 57.203 30.769 0.00 0.00 33.32 2.87
3752 5026 2.319136 CATCAATGCAATGTTGGGGG 57.681 50.000 0.85 0.00 0.00 5.40
3780 5055 5.363005 GCTTAGATTCCCTAACACCTGACTA 59.637 44.000 0.00 0.00 33.95 2.59
3782 5057 4.162509 AGCTTAGATTCCCTAACACCTGAC 59.837 45.833 0.00 0.00 33.95 3.51
3785 5060 5.905913 ACATAGCTTAGATTCCCTAACACCT 59.094 40.000 0.00 0.00 33.95 4.00
3792 5067 5.367937 ACACATGACATAGCTTAGATTCCCT 59.632 40.000 0.00 0.00 0.00 4.20
3801 5076 8.565416 CAATCATATGAACACATGACATAGCTT 58.435 33.333 9.99 0.00 34.15 3.74
3839 5114 1.416813 GCGAGAGTCTGCAACCGATG 61.417 60.000 0.00 0.00 0.00 3.84
3840 5115 1.153745 GCGAGAGTCTGCAACCGAT 60.154 57.895 0.00 0.00 0.00 4.18
3841 5116 2.258591 GCGAGAGTCTGCAACCGA 59.741 61.111 0.00 0.00 0.00 4.69
3842 5117 2.811317 GGCGAGAGTCTGCAACCG 60.811 66.667 0.00 0.00 0.00 4.44
3843 5118 2.435059 GGGCGAGAGTCTGCAACC 60.435 66.667 0.00 0.00 34.89 3.77
3844 5119 0.884704 TTTGGGCGAGAGTCTGCAAC 60.885 55.000 0.00 0.05 34.89 4.17
3845 5120 0.884704 GTTTGGGCGAGAGTCTGCAA 60.885 55.000 0.00 0.00 34.89 4.08
3846 5121 1.301716 GTTTGGGCGAGAGTCTGCA 60.302 57.895 0.00 0.00 34.89 4.41
3847 5122 2.383527 CGTTTGGGCGAGAGTCTGC 61.384 63.158 0.00 1.37 34.89 4.26
3848 5123 0.319555 TTCGTTTGGGCGAGAGTCTG 60.320 55.000 0.00 0.00 42.10 3.51
3849 5124 0.038159 CTTCGTTTGGGCGAGAGTCT 60.038 55.000 0.00 0.00 42.10 3.24
3850 5125 0.319641 ACTTCGTTTGGGCGAGAGTC 60.320 55.000 0.00 0.00 42.10 3.36
3851 5126 0.600255 CACTTCGTTTGGGCGAGAGT 60.600 55.000 0.00 0.00 42.10 3.24
3852 5127 0.600255 ACACTTCGTTTGGGCGAGAG 60.600 55.000 0.00 0.00 42.10 3.20
3853 5128 0.599204 GACACTTCGTTTGGGCGAGA 60.599 55.000 0.00 0.00 42.10 4.04
3854 5129 1.860078 GACACTTCGTTTGGGCGAG 59.140 57.895 0.00 0.00 42.10 5.03
3855 5130 1.952133 CGACACTTCGTTTGGGCGA 60.952 57.895 0.00 0.00 40.61 5.54
3856 5131 2.549282 CGACACTTCGTTTGGGCG 59.451 61.111 0.00 0.00 40.61 6.13
3865 5140 0.318784 ACAGAAGGACGCGACACTTC 60.319 55.000 23.94 23.94 40.59 3.01
3866 5141 0.318784 GACAGAAGGACGCGACACTT 60.319 55.000 15.93 13.91 0.00 3.16
3867 5142 1.173444 AGACAGAAGGACGCGACACT 61.173 55.000 15.93 4.35 0.00 3.55
3868 5143 0.318784 AAGACAGAAGGACGCGACAC 60.319 55.000 15.93 1.49 0.00 3.67
3869 5144 0.039437 GAAGACAGAAGGACGCGACA 60.039 55.000 15.93 0.00 0.00 4.35
3870 5145 0.241481 AGAAGACAGAAGGACGCGAC 59.759 55.000 15.93 6.56 0.00 5.19
3871 5146 0.959553 AAGAAGACAGAAGGACGCGA 59.040 50.000 15.93 0.00 0.00 5.87
3872 5147 2.161808 TCTAAGAAGACAGAAGGACGCG 59.838 50.000 3.53 3.53 0.00 6.01
3873 5148 3.851976 TCTAAGAAGACAGAAGGACGC 57.148 47.619 0.00 0.00 0.00 5.19
3874 5149 4.159857 CGTTCTAAGAAGACAGAAGGACG 58.840 47.826 0.00 0.00 38.38 4.79
3875 5150 5.123805 ACGTTCTAAGAAGACAGAAGGAC 57.876 43.478 10.09 0.00 38.38 3.85
3876 5151 4.825634 TGACGTTCTAAGAAGACAGAAGGA 59.174 41.667 10.09 0.00 38.38 3.36
3877 5152 5.122512 TGACGTTCTAAGAAGACAGAAGG 57.877 43.478 0.00 0.00 40.66 3.46
3878 5153 6.439599 TCTTGACGTTCTAAGAAGACAGAAG 58.560 40.000 7.97 0.00 31.62 2.85
3879 5154 6.387041 TCTTGACGTTCTAAGAAGACAGAA 57.613 37.500 7.97 0.00 30.49 3.02
3880 5155 6.431543 AGATCTTGACGTTCTAAGAAGACAGA 59.568 38.462 12.69 0.00 36.59 3.41
3881 5156 6.616947 AGATCTTGACGTTCTAAGAAGACAG 58.383 40.000 12.69 0.00 36.59 3.51
3882 5157 6.576662 AGATCTTGACGTTCTAAGAAGACA 57.423 37.500 12.69 0.00 36.59 3.41
3883 5158 6.249682 CGAAGATCTTGACGTTCTAAGAAGAC 59.750 42.308 14.00 8.80 36.59 3.01
3884 5159 6.148976 TCGAAGATCTTGACGTTCTAAGAAGA 59.851 38.462 14.00 4.87 36.59 2.87
3885 5160 6.249682 GTCGAAGATCTTGACGTTCTAAGAAG 59.750 42.308 14.00 0.39 40.67 2.85
3886 5161 6.084925 GTCGAAGATCTTGACGTTCTAAGAA 58.915 40.000 14.00 0.00 40.67 2.52
3887 5162 5.629097 GTCGAAGATCTTGACGTTCTAAGA 58.371 41.667 14.00 11.54 40.67 2.10
3888 5163 5.918387 GTCGAAGATCTTGACGTTCTAAG 57.082 43.478 14.00 0.00 40.67 2.18
3896 5171 3.822996 TCAAGTCGTCGAAGATCTTGAC 58.177 45.455 26.05 17.78 41.94 3.18
3897 5172 3.119814 CCTCAAGTCGTCGAAGATCTTGA 60.120 47.826 26.96 26.96 43.24 3.02
3898 5173 3.119814 TCCTCAAGTCGTCGAAGATCTTG 60.120 47.826 23.76 23.76 40.67 3.02
3899 5174 3.082548 TCCTCAAGTCGTCGAAGATCTT 58.917 45.455 7.95 7.95 40.67 2.40
3900 5175 2.420722 GTCCTCAAGTCGTCGAAGATCT 59.579 50.000 3.90 1.22 40.67 2.75
3901 5176 2.420722 AGTCCTCAAGTCGTCGAAGATC 59.579 50.000 3.90 0.00 40.67 2.75
3902 5177 2.438411 AGTCCTCAAGTCGTCGAAGAT 58.562 47.619 3.90 0.00 40.67 2.40
3903 5178 1.893544 AGTCCTCAAGTCGTCGAAGA 58.106 50.000 0.00 0.00 0.00 2.87
3904 5179 2.320367 CAAGTCCTCAAGTCGTCGAAG 58.680 52.381 0.00 0.00 0.00 3.79
3905 5180 1.000607 CCAAGTCCTCAAGTCGTCGAA 60.001 52.381 0.00 0.00 0.00 3.71
3906 5181 0.596577 CCAAGTCCTCAAGTCGTCGA 59.403 55.000 0.00 0.00 0.00 4.20
3907 5182 0.388649 CCCAAGTCCTCAAGTCGTCG 60.389 60.000 0.00 0.00 0.00 5.12
3908 5183 0.670854 GCCCAAGTCCTCAAGTCGTC 60.671 60.000 0.00 0.00 0.00 4.20
3909 5184 1.122019 AGCCCAAGTCCTCAAGTCGT 61.122 55.000 0.00 0.00 0.00 4.34
3910 5185 0.895530 TAGCCCAAGTCCTCAAGTCG 59.104 55.000 0.00 0.00 0.00 4.18
3911 5186 1.404315 CGTAGCCCAAGTCCTCAAGTC 60.404 57.143 0.00 0.00 0.00 3.01
3912 5187 0.608640 CGTAGCCCAAGTCCTCAAGT 59.391 55.000 0.00 0.00 0.00 3.16
3913 5188 0.108138 CCGTAGCCCAAGTCCTCAAG 60.108 60.000 0.00 0.00 0.00 3.02
3914 5189 1.980052 CCGTAGCCCAAGTCCTCAA 59.020 57.895 0.00 0.00 0.00 3.02
3915 5190 2.656069 GCCGTAGCCCAAGTCCTCA 61.656 63.158 0.00 0.00 0.00 3.86
3916 5191 2.187163 GCCGTAGCCCAAGTCCTC 59.813 66.667 0.00 0.00 0.00 3.71
3917 5192 2.606519 TGCCGTAGCCCAAGTCCT 60.607 61.111 0.00 0.00 38.69 3.85
3918 5193 2.125106 CTGCCGTAGCCCAAGTCC 60.125 66.667 0.00 0.00 38.69 3.85
3919 5194 2.125106 CCTGCCGTAGCCCAAGTC 60.125 66.667 0.00 0.00 38.69 3.01
3920 5195 2.606519 TCCTGCCGTAGCCCAAGT 60.607 61.111 0.00 0.00 38.69 3.16
3921 5196 2.187946 CTCCTGCCGTAGCCCAAG 59.812 66.667 0.00 0.00 38.69 3.61
3922 5197 4.096003 GCTCCTGCCGTAGCCCAA 62.096 66.667 0.00 0.00 38.69 4.12
3924 5199 3.816367 GATGCTCCTGCCGTAGCCC 62.816 68.421 0.00 0.00 37.97 5.19
3925 5200 2.280457 GATGCTCCTGCCGTAGCC 60.280 66.667 0.00 0.00 37.97 3.93
3926 5201 1.593750 CAGATGCTCCTGCCGTAGC 60.594 63.158 0.00 0.00 38.71 3.58
3927 5202 1.068753 CCAGATGCTCCTGCCGTAG 59.931 63.158 1.15 0.00 38.71 3.51
3928 5203 1.381191 TCCAGATGCTCCTGCCGTA 60.381 57.895 1.15 0.00 38.71 4.02
3929 5204 2.685017 TCCAGATGCTCCTGCCGT 60.685 61.111 1.15 0.00 38.71 5.68
3930 5205 2.108566 CTCCAGATGCTCCTGCCG 59.891 66.667 1.15 0.00 38.71 5.69
3931 5206 1.630126 TTCCTCCAGATGCTCCTGCC 61.630 60.000 1.15 0.00 38.71 4.85
3932 5207 0.179051 CTTCCTCCAGATGCTCCTGC 60.179 60.000 1.15 0.00 40.20 4.85
3933 5208 1.138661 GTCTTCCTCCAGATGCTCCTG 59.861 57.143 0.00 0.00 0.00 3.86
3934 5209 1.494960 GTCTTCCTCCAGATGCTCCT 58.505 55.000 0.00 0.00 0.00 3.69
3935 5210 0.467804 GGTCTTCCTCCAGATGCTCC 59.532 60.000 0.00 0.00 0.00 4.70
3936 5211 0.103937 CGGTCTTCCTCCAGATGCTC 59.896 60.000 0.00 0.00 0.00 4.26
3937 5212 0.324738 TCGGTCTTCCTCCAGATGCT 60.325 55.000 0.00 0.00 0.00 3.79
3938 5213 0.755686 ATCGGTCTTCCTCCAGATGC 59.244 55.000 0.00 0.00 0.00 3.91
3939 5214 2.297597 GGTATCGGTCTTCCTCCAGATG 59.702 54.545 0.00 0.00 0.00 2.90
3940 5215 2.599677 GGTATCGGTCTTCCTCCAGAT 58.400 52.381 0.00 0.00 0.00 2.90
3941 5216 1.411216 GGGTATCGGTCTTCCTCCAGA 60.411 57.143 0.00 0.00 0.00 3.86
3942 5217 1.041437 GGGTATCGGTCTTCCTCCAG 58.959 60.000 0.00 0.00 0.00 3.86
3943 5218 0.754217 CGGGTATCGGTCTTCCTCCA 60.754 60.000 0.00 0.00 34.75 3.86
3944 5219 0.466922 TCGGGTATCGGTCTTCCTCC 60.467 60.000 0.00 0.00 39.77 4.30
3945 5220 0.953003 CTCGGGTATCGGTCTTCCTC 59.047 60.000 0.00 0.00 39.77 3.71
3946 5221 0.258194 ACTCGGGTATCGGTCTTCCT 59.742 55.000 0.00 0.00 39.77 3.36
3947 5222 1.878734 CTACTCGGGTATCGGTCTTCC 59.121 57.143 0.00 0.00 39.77 3.46
3948 5223 2.570135 ACTACTCGGGTATCGGTCTTC 58.430 52.381 0.00 0.00 39.77 2.87
3949 5224 2.725221 ACTACTCGGGTATCGGTCTT 57.275 50.000 0.00 0.00 39.77 3.01
3950 5225 2.968574 TCTACTACTCGGGTATCGGTCT 59.031 50.000 0.00 0.00 39.77 3.85
3951 5226 3.244044 ACTCTACTACTCGGGTATCGGTC 60.244 52.174 0.00 0.00 39.77 4.79
3952 5227 2.703007 ACTCTACTACTCGGGTATCGGT 59.297 50.000 0.00 0.00 39.77 4.69
3953 5228 3.399440 ACTCTACTACTCGGGTATCGG 57.601 52.381 0.00 0.00 39.77 4.18
3954 5229 5.132897 ACTACTCTACTACTCGGGTATCG 57.867 47.826 0.00 0.00 40.90 2.92
3957 5232 8.589338 CCTAAATACTACTCTACTACTCGGGTA 58.411 40.741 0.00 0.00 0.00 3.69
3958 5233 7.291182 TCCTAAATACTACTCTACTACTCGGGT 59.709 40.741 0.00 0.00 0.00 5.28
3959 5234 7.675062 TCCTAAATACTACTCTACTACTCGGG 58.325 42.308 0.00 0.00 0.00 5.14
3960 5235 8.367156 ACTCCTAAATACTACTCTACTACTCGG 58.633 40.741 0.00 0.00 0.00 4.63
3961 5236 9.195411 CACTCCTAAATACTACTCTACTACTCG 57.805 40.741 0.00 0.00 0.00 4.18
3962 5237 9.492973 CCACTCCTAAATACTACTCTACTACTC 57.507 40.741 0.00 0.00 0.00 2.59
3963 5238 9.223291 TCCACTCCTAAATACTACTCTACTACT 57.777 37.037 0.00 0.00 0.00 2.57
3964 5239 9.492973 CTCCACTCCTAAATACTACTCTACTAC 57.507 40.741 0.00 0.00 0.00 2.73
3965 5240 9.223291 ACTCCACTCCTAAATACTACTCTACTA 57.777 37.037 0.00 0.00 0.00 1.82
3966 5241 7.994334 CACTCCACTCCTAAATACTACTCTACT 59.006 40.741 0.00 0.00 0.00 2.57
3967 5242 7.229106 CCACTCCACTCCTAAATACTACTCTAC 59.771 44.444 0.00 0.00 0.00 2.59
3968 5243 7.128418 TCCACTCCACTCCTAAATACTACTCTA 59.872 40.741 0.00 0.00 0.00 2.43
3969 5244 6.068971 TCCACTCCACTCCTAAATACTACTCT 60.069 42.308 0.00 0.00 0.00 3.24
3970 5245 6.127793 TCCACTCCACTCCTAAATACTACTC 58.872 44.000 0.00 0.00 0.00 2.59
3971 5246 6.088541 TCCACTCCACTCCTAAATACTACT 57.911 41.667 0.00 0.00 0.00 2.57
3972 5247 5.302313 CCTCCACTCCACTCCTAAATACTAC 59.698 48.000 0.00 0.00 0.00 2.73
3973 5248 5.043582 ACCTCCACTCCACTCCTAAATACTA 60.044 44.000 0.00 0.00 0.00 1.82
3974 5249 4.264895 ACCTCCACTCCACTCCTAAATACT 60.265 45.833 0.00 0.00 0.00 2.12
3975 5250 4.031611 ACCTCCACTCCACTCCTAAATAC 58.968 47.826 0.00 0.00 0.00 1.89
3976 5251 4.348020 ACCTCCACTCCACTCCTAAATA 57.652 45.455 0.00 0.00 0.00 1.40
3977 5252 3.207044 ACCTCCACTCCACTCCTAAAT 57.793 47.619 0.00 0.00 0.00 1.40
3978 5253 2.715763 ACCTCCACTCCACTCCTAAA 57.284 50.000 0.00 0.00 0.00 1.85
3979 5254 2.637872 CAAACCTCCACTCCACTCCTAA 59.362 50.000 0.00 0.00 0.00 2.69
3980 5255 2.257207 CAAACCTCCACTCCACTCCTA 58.743 52.381 0.00 0.00 0.00 2.94
3981 5256 1.059913 CAAACCTCCACTCCACTCCT 58.940 55.000 0.00 0.00 0.00 3.69
3982 5257 0.036875 CCAAACCTCCACTCCACTCC 59.963 60.000 0.00 0.00 0.00 3.85
3983 5258 0.765510 ACCAAACCTCCACTCCACTC 59.234 55.000 0.00 0.00 0.00 3.51
3984 5259 1.133792 CAACCAAACCTCCACTCCACT 60.134 52.381 0.00 0.00 0.00 4.00
3985 5260 1.318576 CAACCAAACCTCCACTCCAC 58.681 55.000 0.00 0.00 0.00 4.02
3986 5261 0.184933 CCAACCAAACCTCCACTCCA 59.815 55.000 0.00 0.00 0.00 3.86
3987 5262 0.539669 CCCAACCAAACCTCCACTCC 60.540 60.000 0.00 0.00 0.00 3.85
3988 5263 0.539669 CCCCAACCAAACCTCCACTC 60.540 60.000 0.00 0.00 0.00 3.51
3989 5264 1.293683 ACCCCAACCAAACCTCCACT 61.294 55.000 0.00 0.00 0.00 4.00
3990 5265 0.826256 GACCCCAACCAAACCTCCAC 60.826 60.000 0.00 0.00 0.00 4.02
3991 5266 1.539665 GACCCCAACCAAACCTCCA 59.460 57.895 0.00 0.00 0.00 3.86
3992 5267 1.602605 CGACCCCAACCAAACCTCC 60.603 63.158 0.00 0.00 0.00 4.30
3993 5268 1.602605 CCGACCCCAACCAAACCTC 60.603 63.158 0.00 0.00 0.00 3.85
3994 5269 2.518933 CCGACCCCAACCAAACCT 59.481 61.111 0.00 0.00 0.00 3.50
3995 5270 3.299977 GCCGACCCCAACCAAACC 61.300 66.667 0.00 0.00 0.00 3.27
3996 5271 1.830847 AAGCCGACCCCAACCAAAC 60.831 57.895 0.00 0.00 0.00 2.93
3997 5272 1.830408 CAAGCCGACCCCAACCAAA 60.830 57.895 0.00 0.00 0.00 3.28
3998 5273 2.203422 CAAGCCGACCCCAACCAA 60.203 61.111 0.00 0.00 0.00 3.67
3999 5274 3.494254 ACAAGCCGACCCCAACCA 61.494 61.111 0.00 0.00 0.00 3.67
4000 5275 2.983592 CACAAGCCGACCCCAACC 60.984 66.667 0.00 0.00 0.00 3.77
4001 5276 2.112297 TCACAAGCCGACCCCAAC 59.888 61.111 0.00 0.00 0.00 3.77
4002 5277 2.112297 GTCACAAGCCGACCCCAA 59.888 61.111 0.00 0.00 0.00 4.12
4003 5278 3.948719 GGTCACAAGCCGACCCCA 61.949 66.667 0.00 0.00 46.12 4.96
4007 5282 0.517316 GTTGATGGTCACAAGCCGAC 59.483 55.000 0.00 0.00 0.00 4.79
4008 5283 0.396435 AGTTGATGGTCACAAGCCGA 59.604 50.000 0.00 0.00 0.00 5.54
4009 5284 2.002586 CTAGTTGATGGTCACAAGCCG 58.997 52.381 0.00 0.00 0.00 5.52
4010 5285 1.740025 GCTAGTTGATGGTCACAAGCC 59.260 52.381 0.00 0.00 0.00 4.35
4011 5286 2.675348 GAGCTAGTTGATGGTCACAAGC 59.325 50.000 0.00 0.00 0.00 4.01
4012 5287 3.930336 TGAGCTAGTTGATGGTCACAAG 58.070 45.455 0.00 0.00 36.04 3.16
4013 5288 4.350368 TTGAGCTAGTTGATGGTCACAA 57.650 40.909 0.00 0.00 39.87 3.33
4014 5289 4.256110 CATTGAGCTAGTTGATGGTCACA 58.744 43.478 0.00 0.00 39.87 3.58
4015 5290 4.256920 ACATTGAGCTAGTTGATGGTCAC 58.743 43.478 0.00 0.00 39.87 3.67
4016 5291 4.558226 ACATTGAGCTAGTTGATGGTCA 57.442 40.909 0.00 0.00 38.66 4.02
4017 5292 8.552034 GTTATTACATTGAGCTAGTTGATGGTC 58.448 37.037 0.00 0.00 0.00 4.02
4018 5293 8.267894 AGTTATTACATTGAGCTAGTTGATGGT 58.732 33.333 0.00 0.00 0.00 3.55
4019 5294 8.668510 AGTTATTACATTGAGCTAGTTGATGG 57.331 34.615 0.00 0.00 0.00 3.51
4020 5295 9.539825 AGAGTTATTACATTGAGCTAGTTGATG 57.460 33.333 0.00 0.00 0.00 3.07
4054 5329 9.579932 CCATAGCTTTATAGAAGGGAGAAAAAT 57.420 33.333 0.00 0.00 0.00 1.82
4055 5330 8.557450 ACCATAGCTTTATAGAAGGGAGAAAAA 58.443 33.333 0.00 0.00 0.00 1.94
4056 5331 8.102484 ACCATAGCTTTATAGAAGGGAGAAAA 57.898 34.615 0.00 0.00 0.00 2.29
4057 5332 7.691993 ACCATAGCTTTATAGAAGGGAGAAA 57.308 36.000 0.00 0.00 0.00 2.52
4058 5333 7.039923 CGTACCATAGCTTTATAGAAGGGAGAA 60.040 40.741 0.00 0.00 0.00 2.87
4059 5334 6.433404 CGTACCATAGCTTTATAGAAGGGAGA 59.567 42.308 0.00 0.00 0.00 3.71
4060 5335 6.622549 CGTACCATAGCTTTATAGAAGGGAG 58.377 44.000 0.00 0.00 0.00 4.30
4061 5336 5.047519 GCGTACCATAGCTTTATAGAAGGGA 60.048 44.000 0.00 0.00 0.00 4.20
4062 5337 5.169295 GCGTACCATAGCTTTATAGAAGGG 58.831 45.833 0.00 0.00 0.00 3.95
4063 5338 5.047235 AGGCGTACCATAGCTTTATAGAAGG 60.047 44.000 0.00 0.00 39.06 3.46
4064 5339 6.026947 AGGCGTACCATAGCTTTATAGAAG 57.973 41.667 0.00 0.00 39.06 2.85
4065 5340 6.415206 AAGGCGTACCATAGCTTTATAGAA 57.585 37.500 0.00 0.00 39.06 2.10
4066 5341 6.220930 CAAAGGCGTACCATAGCTTTATAGA 58.779 40.000 0.00 0.00 39.06 1.98
4067 5342 5.408604 CCAAAGGCGTACCATAGCTTTATAG 59.591 44.000 0.00 0.00 39.06 1.31
4068 5343 5.302360 CCAAAGGCGTACCATAGCTTTATA 58.698 41.667 0.00 0.00 39.06 0.98
4069 5344 4.134563 CCAAAGGCGTACCATAGCTTTAT 58.865 43.478 0.00 0.00 39.06 1.40
4070 5345 3.537580 CCAAAGGCGTACCATAGCTTTA 58.462 45.455 0.00 0.00 39.06 1.85
4071 5346 2.365582 CCAAAGGCGTACCATAGCTTT 58.634 47.619 0.00 0.00 39.06 3.51
4072 5347 2.017113 GCCAAAGGCGTACCATAGCTT 61.017 52.381 0.00 0.00 39.62 3.74
4073 5348 0.463833 GCCAAAGGCGTACCATAGCT 60.464 55.000 0.00 0.00 39.62 3.32
4074 5349 2.022520 GCCAAAGGCGTACCATAGC 58.977 57.895 0.00 0.00 39.62 2.97
4084 5359 2.791501 TTCGAGGGTACGCCAAAGGC 62.792 60.000 6.27 0.00 46.75 4.35
4085 5360 0.320946 TTTCGAGGGTACGCCAAAGG 60.321 55.000 6.27 0.00 36.17 3.11
4086 5361 1.076332 CTTTCGAGGGTACGCCAAAG 58.924 55.000 6.27 8.85 36.17 2.77
4087 5362 0.680618 TCTTTCGAGGGTACGCCAAA 59.319 50.000 6.27 3.13 36.17 3.28
4088 5363 0.680618 TTCTTTCGAGGGTACGCCAA 59.319 50.000 6.27 0.00 36.17 4.52
4089 5364 0.680618 TTTCTTTCGAGGGTACGCCA 59.319 50.000 6.27 0.00 36.17 5.69
4090 5365 1.799544 TTTTCTTTCGAGGGTACGCC 58.200 50.000 6.27 0.00 0.00 5.68
4109 5384 5.067805 AGGCAAAGATCTTGACGTTCTTTTT 59.932 36.000 9.17 0.00 38.81 1.94
4110 5385 4.580580 AGGCAAAGATCTTGACGTTCTTTT 59.419 37.500 9.17 0.00 38.81 2.27
4111 5386 4.023707 CAGGCAAAGATCTTGACGTTCTTT 60.024 41.667 9.17 6.39 40.54 2.52
4112 5387 3.499918 CAGGCAAAGATCTTGACGTTCTT 59.500 43.478 9.17 0.00 34.04 2.52
4113 5388 3.070018 CAGGCAAAGATCTTGACGTTCT 58.930 45.455 9.17 0.00 31.33 3.01
4114 5389 2.413371 GCAGGCAAAGATCTTGACGTTC 60.413 50.000 9.17 0.00 31.33 3.95
4115 5390 1.537202 GCAGGCAAAGATCTTGACGTT 59.463 47.619 9.17 0.00 31.33 3.99
4116 5391 1.160137 GCAGGCAAAGATCTTGACGT 58.840 50.000 9.17 3.11 31.33 4.34
4117 5392 1.446907 AGCAGGCAAAGATCTTGACG 58.553 50.000 9.17 2.09 31.33 4.35
4118 5393 2.670509 GCAAGCAGGCAAAGATCTTGAC 60.671 50.000 9.17 5.71 37.03 3.18
4119 5394 1.542915 GCAAGCAGGCAAAGATCTTGA 59.457 47.619 9.17 0.00 37.03 3.02
4120 5395 1.544691 AGCAAGCAGGCAAAGATCTTG 59.455 47.619 9.17 4.72 37.70 3.02
4121 5396 1.920610 AGCAAGCAGGCAAAGATCTT 58.079 45.000 0.88 0.88 35.83 2.40
4122 5397 1.920610 AAGCAAGCAGGCAAAGATCT 58.079 45.000 2.37 0.00 35.83 2.75
4123 5398 2.603953 GAAAGCAAGCAGGCAAAGATC 58.396 47.619 2.37 0.00 35.83 2.75
4124 5399 1.274447 GGAAAGCAAGCAGGCAAAGAT 59.726 47.619 2.37 0.00 35.83 2.40
4125 5400 0.675633 GGAAAGCAAGCAGGCAAAGA 59.324 50.000 2.37 0.00 35.83 2.52
4126 5401 0.390124 TGGAAAGCAAGCAGGCAAAG 59.610 50.000 2.37 0.00 35.83 2.77
4127 5402 1.001181 GATGGAAAGCAAGCAGGCAAA 59.999 47.619 2.37 0.00 35.83 3.68
4128 5403 0.604578 GATGGAAAGCAAGCAGGCAA 59.395 50.000 2.37 0.00 35.83 4.52
4129 5404 0.540133 TGATGGAAAGCAAGCAGGCA 60.540 50.000 2.37 0.00 35.83 4.75
4130 5405 0.604578 TTGATGGAAAGCAAGCAGGC 59.395 50.000 0.00 0.00 0.00 4.85
4131 5406 1.614903 TGTTGATGGAAAGCAAGCAGG 59.385 47.619 0.00 0.00 0.00 4.85
4132 5407 3.587797 ATGTTGATGGAAAGCAAGCAG 57.412 42.857 0.00 0.00 0.00 4.24
4133 5408 3.655486 CAATGTTGATGGAAAGCAAGCA 58.345 40.909 0.00 0.00 0.00 3.91
4134 5409 2.414138 GCAATGTTGATGGAAAGCAAGC 59.586 45.455 0.00 0.00 0.00 4.01
4135 5410 3.655486 TGCAATGTTGATGGAAAGCAAG 58.345 40.909 0.00 0.00 0.00 4.01
4136 5411 3.747854 TGCAATGTTGATGGAAAGCAA 57.252 38.095 0.00 0.00 0.00 3.91
4137 5412 3.965379 ATGCAATGTTGATGGAAAGCA 57.035 38.095 0.00 0.00 35.03 3.91
4138 5413 4.247258 TCAATGCAATGTTGATGGAAAGC 58.753 39.130 0.85 0.00 31.07 3.51
4139 5414 6.816640 AGAATCAATGCAATGTTGATGGAAAG 59.183 34.615 13.37 0.00 43.49 2.62
4140 5415 6.592220 CAGAATCAATGCAATGTTGATGGAAA 59.408 34.615 13.37 0.00 43.49 3.13
4141 5416 6.103330 CAGAATCAATGCAATGTTGATGGAA 58.897 36.000 13.37 0.00 43.49 3.53
4142 5417 5.656480 CAGAATCAATGCAATGTTGATGGA 58.344 37.500 13.37 0.00 43.49 3.41
4143 5418 4.270084 GCAGAATCAATGCAATGTTGATGG 59.730 41.667 13.37 8.50 43.49 3.51
4144 5419 4.270084 GGCAGAATCAATGCAATGTTGATG 59.730 41.667 13.37 5.75 43.49 3.07
4145 5420 4.081365 TGGCAGAATCAATGCAATGTTGAT 60.081 37.500 7.98 7.98 45.53 2.57
4146 5421 3.258622 TGGCAGAATCAATGCAATGTTGA 59.741 39.130 0.85 2.48 45.68 3.18
4147 5422 3.591023 TGGCAGAATCAATGCAATGTTG 58.409 40.909 0.85 0.00 45.68 3.33
4148 5423 3.965379 TGGCAGAATCAATGCAATGTT 57.035 38.095 0.85 0.00 45.68 2.71
4149 5424 3.965379 TTGGCAGAATCAATGCAATGT 57.035 38.095 0.85 0.00 45.68 2.71
4150 5425 5.811399 ATTTTGGCAGAATCAATGCAATG 57.189 34.783 0.00 0.00 45.68 2.82
4151 5426 6.827586 AAATTTTGGCAGAATCAATGCAAT 57.172 29.167 3.50 0.00 45.68 3.56
4152 5427 6.439599 CAAAATTTTGGCAGAATCAATGCAA 58.560 32.000 21.00 0.00 45.68 4.08
4153 5428 6.003234 CAAAATTTTGGCAGAATCAATGCA 57.997 33.333 21.00 0.00 45.68 3.96
4165 5440 8.048315 GATTCCCGATCAACCAAAATTTTGGC 62.048 42.308 38.28 24.97 45.92 4.52
4166 5441 5.351189 GATTCCCGATCAACCAAAATTTTGG 59.649 40.000 37.23 37.23 46.56 3.28
4167 5442 6.091169 CAGATTCCCGATCAACCAAAATTTTG 59.909 38.462 21.65 21.65 37.22 2.44
4168 5443 6.014669 TCAGATTCCCGATCAACCAAAATTTT 60.015 34.615 0.00 0.00 37.22 1.82
4169 5444 5.480073 TCAGATTCCCGATCAACCAAAATTT 59.520 36.000 0.00 0.00 37.22 1.82
4170 5445 5.016173 TCAGATTCCCGATCAACCAAAATT 58.984 37.500 0.00 0.00 37.22 1.82
4171 5446 4.599041 TCAGATTCCCGATCAACCAAAAT 58.401 39.130 0.00 0.00 37.22 1.82
4172 5447 4.009675 CTCAGATTCCCGATCAACCAAAA 58.990 43.478 0.00 0.00 37.22 2.44
4173 5448 3.609853 CTCAGATTCCCGATCAACCAAA 58.390 45.455 0.00 0.00 37.22 3.28
4174 5449 2.680805 GCTCAGATTCCCGATCAACCAA 60.681 50.000 0.00 0.00 37.22 3.67
4175 5450 1.134401 GCTCAGATTCCCGATCAACCA 60.134 52.381 0.00 0.00 37.22 3.67
4176 5451 1.139853 AGCTCAGATTCCCGATCAACC 59.860 52.381 0.00 0.00 37.22 3.77
4177 5452 2.611225 AGCTCAGATTCCCGATCAAC 57.389 50.000 0.00 0.00 37.22 3.18
4178 5453 3.643320 ACATAGCTCAGATTCCCGATCAA 59.357 43.478 0.00 0.00 37.22 2.57
4179 5454 3.234353 ACATAGCTCAGATTCCCGATCA 58.766 45.455 0.00 0.00 37.22 2.92
4180 5455 3.256879 TGACATAGCTCAGATTCCCGATC 59.743 47.826 0.00 0.00 34.83 3.69
4181 5456 3.234353 TGACATAGCTCAGATTCCCGAT 58.766 45.455 0.00 0.00 0.00 4.18
4182 5457 2.666317 TGACATAGCTCAGATTCCCGA 58.334 47.619 0.00 0.00 0.00 5.14
4183 5458 3.244009 ACATGACATAGCTCAGATTCCCG 60.244 47.826 0.00 0.00 0.00 5.14
4184 5459 4.063689 CACATGACATAGCTCAGATTCCC 58.936 47.826 0.00 0.00 0.00 3.97
4185 5460 4.701765 ACACATGACATAGCTCAGATTCC 58.298 43.478 0.00 0.00 0.00 3.01
4186 5461 4.749099 GGACACATGACATAGCTCAGATTC 59.251 45.833 0.00 0.00 0.00 2.52
4187 5462 4.162888 TGGACACATGACATAGCTCAGATT 59.837 41.667 0.00 0.00 0.00 2.40
4188 5463 3.708121 TGGACACATGACATAGCTCAGAT 59.292 43.478 0.00 0.00 0.00 2.90
4189 5464 3.099141 TGGACACATGACATAGCTCAGA 58.901 45.455 0.00 0.00 0.00 3.27
4190 5465 3.531934 TGGACACATGACATAGCTCAG 57.468 47.619 0.00 0.00 0.00 3.35
4191 5466 5.305128 TCATATGGACACATGACATAGCTCA 59.695 40.000 0.00 0.00 37.97 4.26
4192 5467 5.636965 GTCATATGGACACATGACATAGCTC 59.363 44.000 16.44 0.00 46.70 4.09
4193 5468 5.545588 GTCATATGGACACATGACATAGCT 58.454 41.667 16.44 0.00 46.70 3.32
4194 5469 5.852738 GTCATATGGACACATGACATAGC 57.147 43.478 16.44 0.00 46.70 2.97
4214 5489 1.195448 CGATGCAAAGTGACCACAGTC 59.805 52.381 0.00 0.00 43.83 3.51
4215 5490 1.229428 CGATGCAAAGTGACCACAGT 58.771 50.000 0.00 0.00 0.00 3.55
4216 5491 0.518636 CCGATGCAAAGTGACCACAG 59.481 55.000 0.00 0.00 0.00 3.66
4217 5492 0.179032 ACCGATGCAAAGTGACCACA 60.179 50.000 0.00 0.00 0.00 4.17
4218 5493 0.951558 AACCGATGCAAAGTGACCAC 59.048 50.000 0.00 0.00 0.00 4.16
4219 5494 0.950836 CAACCGATGCAAAGTGACCA 59.049 50.000 0.00 0.00 0.00 4.02
4220 5495 3.773117 CAACCGATGCAAAGTGACC 57.227 52.632 0.00 0.00 0.00 4.02
4249 5524 2.025887 GGTGGAGAAATGAGGGTGACAT 60.026 50.000 0.00 0.00 0.00 3.06
4260 5535 1.423921 ACGTCCTTTGGGTGGAGAAAT 59.576 47.619 0.00 0.00 33.78 2.17
4267 5542 2.604174 GCGACACGTCCTTTGGGTG 61.604 63.158 0.00 0.00 37.67 4.61
4268 5543 2.280592 GCGACACGTCCTTTGGGT 60.281 61.111 0.00 0.00 0.00 4.51
4285 5753 3.506455 TGAGAAGTTAAGACTGGAGGACG 59.494 47.826 0.00 0.00 35.91 4.79
4291 5759 4.573900 ACATGCTGAGAAGTTAAGACTGG 58.426 43.478 0.00 0.00 35.91 4.00
4293 5761 5.474578 TGACATGCTGAGAAGTTAAGACT 57.525 39.130 0.00 0.00 37.87 3.24
4309 5777 3.005554 ACCGAGCAAAGATCTTGACATG 58.994 45.455 9.17 4.58 0.00 3.21
4311 5779 2.807967 CAACCGAGCAAAGATCTTGACA 59.192 45.455 9.17 0.00 0.00 3.58
4333 5802 3.835779 TCAATGCAATGTTGATGGAACG 58.164 40.909 0.85 0.00 37.38 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.