Multiple sequence alignment - TraesCS4B01G203600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G203600 chr4B 100.000 2399 0 0 1 2399 435171711 435169313 0.000000e+00 4431
1 TraesCS4B01G203600 chr4B 86.336 1471 176 7 21 1478 144731602 144730144 0.000000e+00 1580
2 TraesCS4B01G203600 chr3D 93.962 1507 70 8 1 1496 540372635 540374131 0.000000e+00 2259
3 TraesCS4B01G203600 chr3D 96.515 373 13 0 2025 2397 388013614 388013242 3.390000e-173 617
4 TraesCS4B01G203600 chr3D 96.267 375 14 0 2025 2399 305943972 305944346 1.220000e-172 616
5 TraesCS4B01G203600 chr7B 92.512 1509 98 6 1 1496 592906866 592908372 0.000000e+00 2146
6 TraesCS4B01G203600 chr7B 88.833 994 100 2 1 984 287159652 287160644 0.000000e+00 1210
7 TraesCS4B01G203600 chr7B 87.175 538 52 8 1497 2024 716283042 716283572 1.590000e-166 595
8 TraesCS4B01G203600 chr7B 90.000 140 13 1 1891 2029 15746592 15746731 1.890000e-41 180
9 TraesCS4B01G203600 chr6B 90.318 1508 132 9 3 1497 68900858 68902364 0.000000e+00 1964
10 TraesCS4B01G203600 chr6B 93.042 848 57 2 597 1443 482764951 482765797 0.000000e+00 1238
11 TraesCS4B01G203600 chr2D 88.668 1509 157 5 1 1497 642787476 642785970 0.000000e+00 1827
12 TraesCS4B01G203600 chr2D 96.533 375 13 0 2025 2399 308214409 308214035 2.620000e-174 621
13 TraesCS4B01G203600 chr5B 87.475 1517 170 10 1 1501 237158867 237157355 0.000000e+00 1731
14 TraesCS4B01G203600 chr5B 91.517 778 64 2 723 1499 54200911 54200135 0.000000e+00 1070
15 TraesCS4B01G203600 chr5B 96.533 375 13 0 2025 2399 581360740 581360366 2.620000e-174 621
16 TraesCS4B01G203600 chr5B 96.757 370 12 0 2025 2394 119199155 119199524 3.390000e-173 617
17 TraesCS4B01G203600 chr7A 87.351 1510 175 7 1 1496 270771063 270772570 0.000000e+00 1716
18 TraesCS4B01G203600 chr3B 86.599 1485 179 11 32 1500 125892123 125893603 0.000000e+00 1622
19 TraesCS4B01G203600 chr7D 85.073 1514 204 11 1 1497 7795906 7797414 0.000000e+00 1524
20 TraesCS4B01G203600 chr7D 82.357 1519 233 25 1 1497 274862418 274860913 0.000000e+00 1288
21 TraesCS4B01G203600 chr4D 96.800 375 12 0 2025 2399 318871225 318870851 5.630000e-176 627
22 TraesCS4B01G203600 chr4D 96.533 375 13 0 2025 2399 318763949 318763575 2.620000e-174 621
23 TraesCS4B01G203600 chr4D 96.267 375 14 0 2025 2399 28285427 28285801 1.220000e-172 616
24 TraesCS4B01G203600 chr4D 85.874 538 56 9 1497 2024 493929578 493930105 2.690000e-154 555
25 TraesCS4B01G203600 chr5D 96.267 375 14 0 2025 2399 350786919 350786545 1.220000e-172 616
26 TraesCS4B01G203600 chr2B 81.703 552 56 23 1497 2021 79128998 79128465 3.690000e-113 418
27 TraesCS4B01G203600 chr2B 80.000 265 33 16 1765 2024 670847739 670847988 6.810000e-41 178
28 TraesCS4B01G203600 chr2B 83.516 182 25 5 1844 2024 214277321 214277144 5.310000e-37 165
29 TraesCS4B01G203600 chr3A 82.421 347 44 8 1497 1827 456407339 456406994 1.090000e-73 287
30 TraesCS4B01G203600 chr4A 80.060 331 31 15 1697 2024 732424516 732424814 1.870000e-51 213
31 TraesCS4B01G203600 chr4A 86.275 153 20 1 1873 2024 660220109 660219957 5.310000e-37 165
32 TraesCS4B01G203600 chr1A 80.142 282 34 15 1758 2024 70699721 70699995 8.750000e-45 191
33 TraesCS4B01G203600 chr1B 87.821 156 18 1 1873 2027 654864470 654864315 5.270000e-42 182
34 TraesCS4B01G203600 chr1B 78.495 279 39 15 1759 2027 566183185 566183452 1.910000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G203600 chr4B 435169313 435171711 2398 True 4431 4431 100.000 1 2399 1 chr4B.!!$R2 2398
1 TraesCS4B01G203600 chr4B 144730144 144731602 1458 True 1580 1580 86.336 21 1478 1 chr4B.!!$R1 1457
2 TraesCS4B01G203600 chr3D 540372635 540374131 1496 False 2259 2259 93.962 1 1496 1 chr3D.!!$F2 1495
3 TraesCS4B01G203600 chr7B 592906866 592908372 1506 False 2146 2146 92.512 1 1496 1 chr7B.!!$F3 1495
4 TraesCS4B01G203600 chr7B 287159652 287160644 992 False 1210 1210 88.833 1 984 1 chr7B.!!$F2 983
5 TraesCS4B01G203600 chr7B 716283042 716283572 530 False 595 595 87.175 1497 2024 1 chr7B.!!$F4 527
6 TraesCS4B01G203600 chr6B 68900858 68902364 1506 False 1964 1964 90.318 3 1497 1 chr6B.!!$F1 1494
7 TraesCS4B01G203600 chr6B 482764951 482765797 846 False 1238 1238 93.042 597 1443 1 chr6B.!!$F2 846
8 TraesCS4B01G203600 chr2D 642785970 642787476 1506 True 1827 1827 88.668 1 1497 1 chr2D.!!$R2 1496
9 TraesCS4B01G203600 chr5B 237157355 237158867 1512 True 1731 1731 87.475 1 1501 1 chr5B.!!$R2 1500
10 TraesCS4B01G203600 chr5B 54200135 54200911 776 True 1070 1070 91.517 723 1499 1 chr5B.!!$R1 776
11 TraesCS4B01G203600 chr7A 270771063 270772570 1507 False 1716 1716 87.351 1 1496 1 chr7A.!!$F1 1495
12 TraesCS4B01G203600 chr3B 125892123 125893603 1480 False 1622 1622 86.599 32 1500 1 chr3B.!!$F1 1468
13 TraesCS4B01G203600 chr7D 7795906 7797414 1508 False 1524 1524 85.073 1 1497 1 chr7D.!!$F1 1496
14 TraesCS4B01G203600 chr7D 274860913 274862418 1505 True 1288 1288 82.357 1 1497 1 chr7D.!!$R1 1496
15 TraesCS4B01G203600 chr4D 493929578 493930105 527 False 555 555 85.874 1497 2024 1 chr4D.!!$F2 527
16 TraesCS4B01G203600 chr2B 79128465 79128998 533 True 418 418 81.703 1497 2021 1 chr2B.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 526 0.038892 CCACTTGGCATCACAGCAAC 60.039 55.0 0.0 0.0 35.83 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 2210 0.033699 ATGAGAGGGAAAGGCAAGCC 60.034 55.0 2.02 2.02 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 5.001232 TGTTCTTTATCCTCCTTTCCGTTG 58.999 41.667 0.00 0.00 0.00 4.10
120 123 1.073923 CCCTACCAAACTGCCACTCTT 59.926 52.381 0.00 0.00 0.00 2.85
133 136 1.593196 CACTCTTTGCTTTCGACCCA 58.407 50.000 0.00 0.00 0.00 4.51
139 142 3.826157 TCTTTGCTTTCGACCCAATCATT 59.174 39.130 0.00 0.00 0.00 2.57
142 145 3.153130 TGCTTTCGACCCAATCATTGAA 58.847 40.909 0.00 0.00 0.00 2.69
150 153 4.498241 GACCCAATCATTGAAAGCTTTCC 58.502 43.478 31.14 16.68 36.36 3.13
175 178 0.543410 TCCTCTTCGGTTGGGTAGCA 60.543 55.000 0.00 0.00 0.00 3.49
197 200 3.241530 TGCTCTCCCGTGGTGCTT 61.242 61.111 0.00 0.00 0.00 3.91
297 300 1.144969 GTCAAACTCGACGCCATTCA 58.855 50.000 0.00 0.00 0.00 2.57
465 469 4.706035 TCATTCAAAATTTTGCAGCACCT 58.294 34.783 23.36 0.00 38.05 4.00
522 526 0.038892 CCACTTGGCATCACAGCAAC 60.039 55.000 0.00 0.00 35.83 4.17
571 575 7.868415 TGGAAAATTATCAACAAAAACCTACCG 59.132 33.333 0.00 0.00 0.00 4.02
650 665 2.611518 CTTTTACAGTCGCCTCTCCAG 58.388 52.381 0.00 0.00 0.00 3.86
674 689 6.704937 AGAAAGTTTTCCTACACCTTTACTCG 59.295 38.462 1.16 0.00 37.92 4.18
743 758 4.189231 ACTTATTAGCGAACCTGCGAAAT 58.811 39.130 0.00 0.00 40.67 2.17
778 793 1.160137 GCTGCTCGTGAGTTGGATTT 58.840 50.000 0.00 0.00 0.00 2.17
793 811 1.134226 GATTTGTGTGCTGTTGCTGC 58.866 50.000 0.00 0.00 40.48 5.25
886 904 1.628846 ACGCCTACTCCTCCATTGTTT 59.371 47.619 0.00 0.00 0.00 2.83
903 921 6.127925 CCATTGTTTCTGATGATTCCTTCGAA 60.128 38.462 0.00 0.00 0.00 3.71
1052 1070 2.270352 TGCCCTCGTTGTCAAGATTT 57.730 45.000 0.00 0.00 0.00 2.17
1065 1083 5.499313 TGTCAAGATTTGTATGAGGATGCA 58.501 37.500 0.00 0.00 0.00 3.96
1077 1095 3.890527 GGATGCACTCCACCTCATT 57.109 52.632 9.50 0.00 44.26 2.57
1097 1115 0.901827 TCCAACTGCTCTTATGCGGA 59.098 50.000 2.13 0.00 41.56 5.54
1225 1254 3.402628 TGACAGTTTCCTGGAAGCTAC 57.597 47.619 22.97 19.22 43.36 3.58
1257 1286 4.450419 AGAAATGCTCTCGTGTTCAGAAAG 59.550 41.667 0.00 0.00 0.00 2.62
1315 1344 4.604156 TGTAGCAGATTTCTCTCTCTGGA 58.396 43.478 2.13 0.00 39.42 3.86
1337 1366 6.481644 TGGATTTTCCGTTTCAAAAAGAATGG 59.518 34.615 0.00 0.00 40.17 3.16
1341 1370 6.648879 TTCCGTTTCAAAAAGAATGGAGAT 57.351 33.333 0.00 0.00 40.28 2.75
1439 1471 5.284864 TGCTGTAATTCTCGACATCTCATC 58.715 41.667 0.00 0.00 0.00 2.92
1443 1475 7.100458 TGTAATTCTCGACATCTCATCTGAA 57.900 36.000 0.00 0.00 0.00 3.02
1539 1574 3.299503 AGTGACAATTTGGCAGGAAGTT 58.700 40.909 4.84 0.00 35.04 2.66
1541 1576 4.892934 AGTGACAATTTGGCAGGAAGTTAA 59.107 37.500 4.84 0.00 35.04 2.01
1621 1663 1.076632 CCCTAGCTGAGGTCTCCGT 60.077 63.158 0.00 0.00 45.03 4.69
1624 1666 1.178276 CTAGCTGAGGTCTCCGTGTT 58.822 55.000 0.00 0.00 0.00 3.32
1656 1699 3.991051 CACGACGGGCAGACAGGT 61.991 66.667 0.00 0.00 0.00 4.00
1657 1700 3.231736 ACGACGGGCAGACAGGTT 61.232 61.111 0.00 0.00 0.00 3.50
1710 1754 0.196118 AAGGAAGAGTGGAAGGGGGA 59.804 55.000 0.00 0.00 0.00 4.81
1713 1760 0.912006 GAAGAGTGGAAGGGGGAGCT 60.912 60.000 0.00 0.00 0.00 4.09
1800 1861 3.781760 ACGGCTTAGGGTTCGTCA 58.218 55.556 0.00 0.00 0.00 4.35
1834 1895 3.803082 CGGCTACGTCGGGTTCGA 61.803 66.667 0.00 0.00 43.86 3.71
1849 1910 2.050351 CGAGTGGTTCGTGCGAGT 60.050 61.111 0.00 0.00 44.27 4.18
1871 1932 1.837051 TGCGGTGAGAGGGTGAGTT 60.837 57.895 0.00 0.00 0.00 3.01
1880 1941 3.580319 GGGTGAGTTGGCCTGGGT 61.580 66.667 3.32 0.00 0.00 4.51
1894 1955 3.009115 GGGTGGCTGGGCTAGTCA 61.009 66.667 0.00 0.00 39.09 3.41
2024 2087 2.441901 GCCCAAATCCGCCCATGA 60.442 61.111 0.00 0.00 0.00 3.07
2025 2088 1.833934 GCCCAAATCCGCCCATGAT 60.834 57.895 0.00 0.00 0.00 2.45
2026 2089 1.402107 GCCCAAATCCGCCCATGATT 61.402 55.000 0.00 0.00 33.97 2.57
2027 2090 0.390124 CCCAAATCCGCCCATGATTG 59.610 55.000 0.00 0.00 32.91 2.67
2028 2091 1.113788 CCAAATCCGCCCATGATTGT 58.886 50.000 0.00 0.00 32.91 2.71
2029 2092 1.202440 CCAAATCCGCCCATGATTGTG 60.202 52.381 0.00 0.00 32.91 3.33
2030 2093 1.750206 CAAATCCGCCCATGATTGTGA 59.250 47.619 0.00 0.00 32.91 3.58
2031 2094 1.683943 AATCCGCCCATGATTGTGAG 58.316 50.000 0.00 0.00 31.42 3.51
2032 2095 0.820891 ATCCGCCCATGATTGTGAGC 60.821 55.000 0.00 0.00 0.00 4.26
2033 2096 1.750018 CCGCCCATGATTGTGAGCA 60.750 57.895 0.00 0.00 0.00 4.26
2034 2097 1.430632 CGCCCATGATTGTGAGCAC 59.569 57.895 0.00 0.00 0.00 4.40
2035 2098 1.028330 CGCCCATGATTGTGAGCACT 61.028 55.000 0.00 0.00 0.00 4.40
2036 2099 0.737219 GCCCATGATTGTGAGCACTC 59.263 55.000 0.00 0.00 0.00 3.51
2037 2100 1.951895 GCCCATGATTGTGAGCACTCA 60.952 52.381 0.00 0.00 38.39 3.41
2038 2101 2.651455 CCCATGATTGTGAGCACTCAT 58.349 47.619 3.24 1.42 43.08 2.90
2039 2102 3.021695 CCCATGATTGTGAGCACTCATT 58.978 45.455 3.24 0.00 41.24 2.57
2040 2103 4.201657 CCCATGATTGTGAGCACTCATTA 58.798 43.478 3.24 0.00 41.24 1.90
2041 2104 4.641541 CCCATGATTGTGAGCACTCATTAA 59.358 41.667 3.24 3.54 41.24 1.40
2042 2105 5.125900 CCCATGATTGTGAGCACTCATTAAA 59.874 40.000 3.24 0.36 41.24 1.52
2043 2106 6.350361 CCCATGATTGTGAGCACTCATTAAAA 60.350 38.462 3.24 0.00 41.24 1.52
2044 2107 7.262772 CCATGATTGTGAGCACTCATTAAAAT 58.737 34.615 3.24 2.75 41.24 1.82
2045 2108 8.407832 CCATGATTGTGAGCACTCATTAAAATA 58.592 33.333 3.24 0.00 41.24 1.40
2046 2109 9.961265 CATGATTGTGAGCACTCATTAAAATAT 57.039 29.630 3.24 0.00 41.24 1.28
2047 2110 9.961265 ATGATTGTGAGCACTCATTAAAATATG 57.039 29.630 3.24 0.00 40.61 1.78
2048 2111 9.176460 TGATTGTGAGCACTCATTAAAATATGA 57.824 29.630 3.24 0.00 42.18 2.15
2049 2112 9.443283 GATTGTGAGCACTCATTAAAATATGAC 57.557 33.333 3.24 0.00 42.18 3.06
2050 2113 7.920160 TGTGAGCACTCATTAAAATATGACA 57.080 32.000 3.24 0.00 42.18 3.58
2051 2114 8.510243 TGTGAGCACTCATTAAAATATGACAT 57.490 30.769 3.24 0.00 42.18 3.06
2052 2115 8.400186 TGTGAGCACTCATTAAAATATGACATG 58.600 33.333 3.24 0.00 42.18 3.21
2053 2116 7.377928 GTGAGCACTCATTAAAATATGACATGC 59.622 37.037 3.24 0.00 42.18 4.06
2054 2117 7.283807 TGAGCACTCATTAAAATATGACATGCT 59.716 33.333 15.27 15.27 45.51 3.79
2055 2118 8.681486 AGCACTCATTAAAATATGACATGCTA 57.319 30.769 14.36 0.00 43.40 3.49
2056 2119 9.123902 AGCACTCATTAAAATATGACATGCTAA 57.876 29.630 14.36 0.00 43.40 3.09
2057 2120 9.734620 GCACTCATTAAAATATGACATGCTAAA 57.265 29.630 0.00 0.00 37.94 1.85
2069 2132 7.878477 ATGACATGCTAAAAAGTTGATGTTG 57.122 32.000 0.00 0.00 0.00 3.33
2070 2133 6.215121 TGACATGCTAAAAAGTTGATGTTGG 58.785 36.000 0.00 0.00 0.00 3.77
2071 2134 6.040278 TGACATGCTAAAAAGTTGATGTTGGA 59.960 34.615 0.00 0.00 0.00 3.53
2072 2135 6.215845 ACATGCTAAAAAGTTGATGTTGGAC 58.784 36.000 0.00 0.00 0.00 4.02
2073 2136 5.843673 TGCTAAAAAGTTGATGTTGGACA 57.156 34.783 0.00 0.00 0.00 4.02
2074 2137 6.214191 TGCTAAAAAGTTGATGTTGGACAA 57.786 33.333 0.00 0.00 0.00 3.18
2075 2138 6.272318 TGCTAAAAAGTTGATGTTGGACAAG 58.728 36.000 0.00 0.00 0.00 3.16
2076 2139 5.691754 GCTAAAAAGTTGATGTTGGACAAGG 59.308 40.000 0.00 0.00 0.00 3.61
2077 2140 5.930837 AAAAAGTTGATGTTGGACAAGGA 57.069 34.783 0.00 0.00 0.00 3.36
2078 2141 5.930837 AAAAGTTGATGTTGGACAAGGAA 57.069 34.783 0.00 0.00 0.00 3.36
2079 2142 5.520376 AAAGTTGATGTTGGACAAGGAAG 57.480 39.130 0.00 0.00 0.00 3.46
2080 2143 4.437682 AGTTGATGTTGGACAAGGAAGA 57.562 40.909 0.00 0.00 0.00 2.87
2081 2144 4.137543 AGTTGATGTTGGACAAGGAAGAC 58.862 43.478 0.00 0.00 0.00 3.01
2082 2145 3.855255 TGATGTTGGACAAGGAAGACA 57.145 42.857 0.00 0.00 0.00 3.41
2083 2146 4.163441 TGATGTTGGACAAGGAAGACAA 57.837 40.909 0.00 0.00 0.00 3.18
2084 2147 3.882888 TGATGTTGGACAAGGAAGACAAC 59.117 43.478 0.00 0.00 41.18 3.32
2085 2148 3.644966 TGTTGGACAAGGAAGACAACT 57.355 42.857 0.00 0.00 41.32 3.16
2086 2149 3.963129 TGTTGGACAAGGAAGACAACTT 58.037 40.909 0.00 0.00 41.32 2.66
2087 2150 5.105567 TGTTGGACAAGGAAGACAACTTA 57.894 39.130 0.00 0.00 41.32 2.24
2088 2151 5.502079 TGTTGGACAAGGAAGACAACTTAA 58.498 37.500 0.00 0.00 41.32 1.85
2089 2152 6.126409 TGTTGGACAAGGAAGACAACTTAAT 58.874 36.000 0.00 0.00 41.32 1.40
2090 2153 6.039270 TGTTGGACAAGGAAGACAACTTAATG 59.961 38.462 0.00 0.00 41.32 1.90
2091 2154 5.070001 TGGACAAGGAAGACAACTTAATGG 58.930 41.667 0.00 0.00 36.39 3.16
2092 2155 4.459337 GGACAAGGAAGACAACTTAATGGG 59.541 45.833 0.00 0.00 36.39 4.00
2093 2156 5.061721 ACAAGGAAGACAACTTAATGGGT 57.938 39.130 0.00 0.00 36.39 4.51
2094 2157 5.454966 ACAAGGAAGACAACTTAATGGGTT 58.545 37.500 0.00 0.00 36.39 4.11
2095 2158 6.607019 ACAAGGAAGACAACTTAATGGGTTA 58.393 36.000 0.00 0.00 36.39 2.85
2096 2159 7.238710 ACAAGGAAGACAACTTAATGGGTTAT 58.761 34.615 0.00 0.00 36.39 1.89
2097 2160 7.176690 ACAAGGAAGACAACTTAATGGGTTATG 59.823 37.037 0.00 0.00 36.39 1.90
2098 2161 5.652452 AGGAAGACAACTTAATGGGTTATGC 59.348 40.000 0.00 0.00 36.39 3.14
2099 2162 5.652452 GGAAGACAACTTAATGGGTTATGCT 59.348 40.000 0.00 0.00 36.39 3.79
2100 2163 6.152831 GGAAGACAACTTAATGGGTTATGCTT 59.847 38.462 0.00 0.00 36.39 3.91
2101 2164 7.309805 GGAAGACAACTTAATGGGTTATGCTTT 60.310 37.037 0.00 0.00 36.39 3.51
2102 2165 7.158099 AGACAACTTAATGGGTTATGCTTTC 57.842 36.000 0.00 0.00 0.00 2.62
2103 2166 6.152831 AGACAACTTAATGGGTTATGCTTTCC 59.847 38.462 0.00 0.00 0.00 3.13
2104 2167 6.016555 ACAACTTAATGGGTTATGCTTTCCT 58.983 36.000 0.00 0.00 0.00 3.36
2105 2168 7.179269 ACAACTTAATGGGTTATGCTTTCCTA 58.821 34.615 0.00 0.00 0.00 2.94
2106 2169 7.839200 ACAACTTAATGGGTTATGCTTTCCTAT 59.161 33.333 0.00 0.00 0.00 2.57
2107 2170 9.349713 CAACTTAATGGGTTATGCTTTCCTATA 57.650 33.333 0.00 0.00 0.00 1.31
2109 2172 9.740710 ACTTAATGGGTTATGCTTTCCTATATC 57.259 33.333 0.00 0.00 0.00 1.63
2110 2173 9.178758 CTTAATGGGTTATGCTTTCCTATATCC 57.821 37.037 0.00 0.00 0.00 2.59
2111 2174 5.160607 TGGGTTATGCTTTCCTATATCCG 57.839 43.478 0.00 0.00 0.00 4.18
2112 2175 4.841813 TGGGTTATGCTTTCCTATATCCGA 59.158 41.667 0.00 0.00 0.00 4.55
2113 2176 5.308497 TGGGTTATGCTTTCCTATATCCGAA 59.692 40.000 0.00 0.00 0.00 4.30
2114 2177 6.183361 TGGGTTATGCTTTCCTATATCCGAAA 60.183 38.462 0.00 0.00 0.00 3.46
2115 2178 6.148976 GGGTTATGCTTTCCTATATCCGAAAC 59.851 42.308 0.00 0.00 0.00 2.78
2116 2179 6.128634 GGTTATGCTTTCCTATATCCGAAACG 60.129 42.308 0.00 0.00 0.00 3.60
2117 2180 4.395959 TGCTTTCCTATATCCGAAACGT 57.604 40.909 0.00 0.00 0.00 3.99
2118 2181 4.761975 TGCTTTCCTATATCCGAAACGTT 58.238 39.130 0.00 0.00 0.00 3.99
2119 2182 5.904941 TGCTTTCCTATATCCGAAACGTTA 58.095 37.500 0.00 0.00 0.00 3.18
2120 2183 6.518493 TGCTTTCCTATATCCGAAACGTTAT 58.482 36.000 0.00 0.00 0.00 1.89
2121 2184 7.660112 TGCTTTCCTATATCCGAAACGTTATA 58.340 34.615 0.00 0.00 0.00 0.98
2122 2185 8.308931 TGCTTTCCTATATCCGAAACGTTATAT 58.691 33.333 0.00 3.87 0.00 0.86
2123 2186 9.148104 GCTTTCCTATATCCGAAACGTTATATT 57.852 33.333 0.00 0.00 0.00 1.28
2125 2188 9.985730 TTTCCTATATCCGAAACGTTATATTGT 57.014 29.630 0.00 0.00 0.00 2.71
2131 2194 9.932207 ATATCCGAAACGTTATATTGTATTGGA 57.068 29.630 0.00 2.25 0.00 3.53
2132 2195 8.842358 ATCCGAAACGTTATATTGTATTGGAT 57.158 30.769 0.00 4.76 0.00 3.41
2133 2196 8.301730 TCCGAAACGTTATATTGTATTGGATC 57.698 34.615 0.00 0.00 0.00 3.36
2134 2197 7.927092 TCCGAAACGTTATATTGTATTGGATCA 59.073 33.333 0.00 0.00 0.00 2.92
2135 2198 8.717821 CCGAAACGTTATATTGTATTGGATCAT 58.282 33.333 0.00 0.00 0.00 2.45
2136 2199 9.741168 CGAAACGTTATATTGTATTGGATCATC 57.259 33.333 0.00 0.00 0.00 2.92
2138 2201 9.567776 AAACGTTATATTGTATTGGATCATCCA 57.432 29.630 0.66 0.66 46.61 3.41
2154 2217 4.679412 CAACATGTTGGGCTTGCC 57.321 55.556 27.60 2.49 36.95 4.52
2155 2218 2.051941 CAACATGTTGGGCTTGCCT 58.948 52.632 27.60 0.00 36.95 4.75
2156 2219 0.393820 CAACATGTTGGGCTTGCCTT 59.606 50.000 27.60 0.00 36.95 4.35
2157 2220 1.130777 AACATGTTGGGCTTGCCTTT 58.869 45.000 11.07 0.00 0.00 3.11
2158 2221 0.681175 ACATGTTGGGCTTGCCTTTC 59.319 50.000 11.71 3.13 0.00 2.62
2159 2222 0.037046 CATGTTGGGCTTGCCTTTCC 60.037 55.000 11.71 0.00 0.00 3.13
2160 2223 1.194121 ATGTTGGGCTTGCCTTTCCC 61.194 55.000 11.71 0.00 40.47 3.97
2161 2224 1.533994 GTTGGGCTTGCCTTTCCCT 60.534 57.895 11.71 0.00 40.69 4.20
2162 2225 1.228862 TTGGGCTTGCCTTTCCCTC 60.229 57.895 11.71 0.00 40.69 4.30
2163 2226 1.729267 TTGGGCTTGCCTTTCCCTCT 61.729 55.000 11.71 0.00 40.69 3.69
2164 2227 1.379176 GGGCTTGCCTTTCCCTCTC 60.379 63.158 11.71 0.00 37.08 3.20
2165 2228 1.380302 GGCTTGCCTTTCCCTCTCA 59.620 57.895 4.11 0.00 0.00 3.27
2166 2229 0.033699 GGCTTGCCTTTCCCTCTCAT 60.034 55.000 4.11 0.00 0.00 2.90
2167 2230 1.101331 GCTTGCCTTTCCCTCTCATG 58.899 55.000 0.00 0.00 0.00 3.07
2168 2231 1.101331 CTTGCCTTTCCCTCTCATGC 58.899 55.000 0.00 0.00 0.00 4.06
2169 2232 0.700564 TTGCCTTTCCCTCTCATGCT 59.299 50.000 0.00 0.00 0.00 3.79
2170 2233 1.583556 TGCCTTTCCCTCTCATGCTA 58.416 50.000 0.00 0.00 0.00 3.49
2171 2234 1.487976 TGCCTTTCCCTCTCATGCTAG 59.512 52.381 0.00 0.00 0.00 3.42
2172 2235 1.813477 GCCTTTCCCTCTCATGCTAGC 60.813 57.143 8.10 8.10 0.00 3.42
2173 2236 1.202746 CCTTTCCCTCTCATGCTAGCC 60.203 57.143 13.29 0.00 0.00 3.93
2174 2237 1.487976 CTTTCCCTCTCATGCTAGCCA 59.512 52.381 13.29 0.24 0.00 4.75
2175 2238 1.583556 TTCCCTCTCATGCTAGCCAA 58.416 50.000 13.29 0.00 0.00 4.52
2176 2239 1.583556 TCCCTCTCATGCTAGCCAAA 58.416 50.000 13.29 0.00 0.00 3.28
2177 2240 2.130193 TCCCTCTCATGCTAGCCAAAT 58.870 47.619 13.29 0.00 0.00 2.32
2178 2241 2.511218 TCCCTCTCATGCTAGCCAAATT 59.489 45.455 13.29 0.00 0.00 1.82
2179 2242 2.883386 CCCTCTCATGCTAGCCAAATTC 59.117 50.000 13.29 0.00 0.00 2.17
2180 2243 3.434739 CCCTCTCATGCTAGCCAAATTCT 60.435 47.826 13.29 0.00 0.00 2.40
2181 2244 4.205587 CCTCTCATGCTAGCCAAATTCTT 58.794 43.478 13.29 0.00 0.00 2.52
2182 2245 4.643784 CCTCTCATGCTAGCCAAATTCTTT 59.356 41.667 13.29 0.00 0.00 2.52
2183 2246 5.450137 CCTCTCATGCTAGCCAAATTCTTTG 60.450 44.000 13.29 0.00 40.32 2.77
2184 2247 4.110482 CTCATGCTAGCCAAATTCTTTGC 58.890 43.478 13.29 0.00 39.31 3.68
2185 2248 3.510753 TCATGCTAGCCAAATTCTTTGCA 59.489 39.130 13.29 0.00 39.31 4.08
2186 2249 3.302365 TGCTAGCCAAATTCTTTGCAC 57.698 42.857 13.29 0.00 39.31 4.57
2187 2250 2.029110 TGCTAGCCAAATTCTTTGCACC 60.029 45.455 13.29 0.00 39.31 5.01
2188 2251 2.029110 GCTAGCCAAATTCTTTGCACCA 60.029 45.455 2.29 0.00 39.31 4.17
2189 2252 3.554752 GCTAGCCAAATTCTTTGCACCAA 60.555 43.478 2.29 0.00 39.31 3.67
2190 2253 3.116079 AGCCAAATTCTTTGCACCAAG 57.884 42.857 0.00 0.00 39.31 3.61
2191 2254 2.435437 AGCCAAATTCTTTGCACCAAGT 59.565 40.909 0.00 0.00 39.31 3.16
2192 2255 3.640967 AGCCAAATTCTTTGCACCAAGTA 59.359 39.130 0.00 0.00 39.31 2.24
2193 2256 3.989817 GCCAAATTCTTTGCACCAAGTAG 59.010 43.478 0.00 0.00 39.31 2.57
2194 2257 4.261994 GCCAAATTCTTTGCACCAAGTAGA 60.262 41.667 0.00 0.00 39.31 2.59
2195 2258 5.738783 GCCAAATTCTTTGCACCAAGTAGAA 60.739 40.000 0.00 0.00 39.31 2.10
2196 2259 6.279882 CCAAATTCTTTGCACCAAGTAGAAA 58.720 36.000 0.00 0.00 39.31 2.52
2197 2260 6.930722 CCAAATTCTTTGCACCAAGTAGAAAT 59.069 34.615 0.00 0.00 39.31 2.17
2198 2261 8.087750 CCAAATTCTTTGCACCAAGTAGAAATA 58.912 33.333 0.00 0.00 39.31 1.40
2199 2262 8.915654 CAAATTCTTTGCACCAAGTAGAAATAC 58.084 33.333 0.00 0.00 33.36 1.89
2200 2263 8.409358 AATTCTTTGCACCAAGTAGAAATACT 57.591 30.769 0.00 0.00 28.43 2.12
2201 2264 9.515226 AATTCTTTGCACCAAGTAGAAATACTA 57.485 29.630 0.00 0.00 28.43 1.82
2214 2277 7.900782 GTAGAAATACTACTTGTGCTTCCAA 57.099 36.000 0.00 0.00 45.56 3.53
2215 2278 8.319143 GTAGAAATACTACTTGTGCTTCCAAA 57.681 34.615 0.00 0.00 45.56 3.28
2216 2279 7.203255 AGAAATACTACTTGTGCTTCCAAAC 57.797 36.000 0.00 0.00 0.00 2.93
2217 2280 6.770785 AGAAATACTACTTGTGCTTCCAAACA 59.229 34.615 0.00 0.00 0.00 2.83
2218 2281 7.448469 AGAAATACTACTTGTGCTTCCAAACAT 59.552 33.333 0.00 0.00 0.00 2.71
2219 2282 6.743575 ATACTACTTGTGCTTCCAAACATC 57.256 37.500 0.00 0.00 0.00 3.06
2220 2283 3.821033 ACTACTTGTGCTTCCAAACATCC 59.179 43.478 0.00 0.00 0.00 3.51
2221 2284 1.963515 ACTTGTGCTTCCAAACATCCC 59.036 47.619 0.00 0.00 0.00 3.85
2222 2285 2.242043 CTTGTGCTTCCAAACATCCCT 58.758 47.619 0.00 0.00 0.00 4.20
2223 2286 2.380064 TGTGCTTCCAAACATCCCTT 57.620 45.000 0.00 0.00 0.00 3.95
2224 2287 3.517296 TGTGCTTCCAAACATCCCTTA 57.483 42.857 0.00 0.00 0.00 2.69
2225 2288 3.838565 TGTGCTTCCAAACATCCCTTAA 58.161 40.909 0.00 0.00 0.00 1.85
2226 2289 4.219115 TGTGCTTCCAAACATCCCTTAAA 58.781 39.130 0.00 0.00 0.00 1.52
2227 2290 4.038642 TGTGCTTCCAAACATCCCTTAAAC 59.961 41.667 0.00 0.00 0.00 2.01
2228 2291 3.576550 TGCTTCCAAACATCCCTTAAACC 59.423 43.478 0.00 0.00 0.00 3.27
2229 2292 3.576550 GCTTCCAAACATCCCTTAAACCA 59.423 43.478 0.00 0.00 0.00 3.67
2230 2293 4.039852 GCTTCCAAACATCCCTTAAACCAA 59.960 41.667 0.00 0.00 0.00 3.67
2231 2294 5.279960 GCTTCCAAACATCCCTTAAACCAAT 60.280 40.000 0.00 0.00 0.00 3.16
2232 2295 6.744056 GCTTCCAAACATCCCTTAAACCAATT 60.744 38.462 0.00 0.00 0.00 2.32
2233 2296 6.755542 TCCAAACATCCCTTAAACCAATTT 57.244 33.333 0.00 0.00 0.00 1.82
2234 2297 7.142995 TCCAAACATCCCTTAAACCAATTTT 57.857 32.000 0.00 0.00 0.00 1.82
2235 2298 6.995091 TCCAAACATCCCTTAAACCAATTTTG 59.005 34.615 0.00 0.00 0.00 2.44
2236 2299 6.293900 CCAAACATCCCTTAAACCAATTTTGC 60.294 38.462 0.00 0.00 0.00 3.68
2237 2300 4.905429 ACATCCCTTAAACCAATTTTGCC 58.095 39.130 0.00 0.00 0.00 4.52
2238 2301 4.349342 ACATCCCTTAAACCAATTTTGCCA 59.651 37.500 0.00 0.00 0.00 4.92
2239 2302 5.014018 ACATCCCTTAAACCAATTTTGCCAT 59.986 36.000 0.00 0.00 0.00 4.40
2240 2303 4.904241 TCCCTTAAACCAATTTTGCCATG 58.096 39.130 0.00 0.00 0.00 3.66
2241 2304 4.594920 TCCCTTAAACCAATTTTGCCATGA 59.405 37.500 0.00 0.00 0.00 3.07
2242 2305 4.937015 CCCTTAAACCAATTTTGCCATGAG 59.063 41.667 0.00 0.00 0.00 2.90
2243 2306 5.279910 CCCTTAAACCAATTTTGCCATGAGA 60.280 40.000 0.00 0.00 0.00 3.27
2244 2307 5.870978 CCTTAAACCAATTTTGCCATGAGAG 59.129 40.000 0.00 0.00 0.00 3.20
2245 2308 4.961438 AAACCAATTTTGCCATGAGAGT 57.039 36.364 0.00 0.00 0.00 3.24
2246 2309 4.525912 AACCAATTTTGCCATGAGAGTC 57.474 40.909 0.00 0.00 0.00 3.36
2247 2310 2.827921 ACCAATTTTGCCATGAGAGTCC 59.172 45.455 0.00 0.00 0.00 3.85
2248 2311 2.827322 CCAATTTTGCCATGAGAGTCCA 59.173 45.455 0.00 0.00 0.00 4.02
2249 2312 3.367703 CCAATTTTGCCATGAGAGTCCAC 60.368 47.826 0.00 0.00 0.00 4.02
2250 2313 1.909700 TTTTGCCATGAGAGTCCACC 58.090 50.000 0.00 0.00 0.00 4.61
2251 2314 0.770499 TTTGCCATGAGAGTCCACCA 59.230 50.000 0.00 0.00 0.00 4.17
2252 2315 0.994247 TTGCCATGAGAGTCCACCAT 59.006 50.000 0.00 0.00 0.00 3.55
2253 2316 1.878211 TGCCATGAGAGTCCACCATA 58.122 50.000 0.00 0.00 0.00 2.74
2254 2317 1.486310 TGCCATGAGAGTCCACCATAC 59.514 52.381 0.00 0.00 0.00 2.39
2255 2318 1.202698 GCCATGAGAGTCCACCATACC 60.203 57.143 0.00 0.00 0.00 2.73
2256 2319 2.402564 CCATGAGAGTCCACCATACCT 58.597 52.381 0.00 0.00 0.00 3.08
2257 2320 3.576861 CCATGAGAGTCCACCATACCTA 58.423 50.000 0.00 0.00 0.00 3.08
2258 2321 3.322254 CCATGAGAGTCCACCATACCTAC 59.678 52.174 0.00 0.00 0.00 3.18
2259 2322 3.028094 TGAGAGTCCACCATACCTACC 57.972 52.381 0.00 0.00 0.00 3.18
2260 2323 2.585900 TGAGAGTCCACCATACCTACCT 59.414 50.000 0.00 0.00 0.00 3.08
2261 2324 3.789840 TGAGAGTCCACCATACCTACCTA 59.210 47.826 0.00 0.00 0.00 3.08
2262 2325 4.231195 TGAGAGTCCACCATACCTACCTAA 59.769 45.833 0.00 0.00 0.00 2.69
2263 2326 4.805744 AGAGTCCACCATACCTACCTAAG 58.194 47.826 0.00 0.00 0.00 2.18
2278 2341 6.408107 CTACCTAAGGATTGAGTAAGACCC 57.592 45.833 0.00 0.00 0.00 4.46
2279 2342 4.961585 ACCTAAGGATTGAGTAAGACCCT 58.038 43.478 0.00 0.00 0.00 4.34
2280 2343 5.351405 ACCTAAGGATTGAGTAAGACCCTT 58.649 41.667 0.00 0.00 37.69 3.95
2281 2344 5.425862 ACCTAAGGATTGAGTAAGACCCTTC 59.574 44.000 0.00 0.00 35.77 3.46
2282 2345 5.425539 CCTAAGGATTGAGTAAGACCCTTCA 59.574 44.000 0.00 0.00 35.77 3.02
2283 2346 5.843019 AAGGATTGAGTAAGACCCTTCAA 57.157 39.130 0.00 0.00 34.42 2.69
2284 2347 5.428184 AGGATTGAGTAAGACCCTTCAAG 57.572 43.478 0.00 0.00 33.53 3.02
2285 2348 4.846940 AGGATTGAGTAAGACCCTTCAAGT 59.153 41.667 0.00 0.00 33.53 3.16
2286 2349 6.023603 AGGATTGAGTAAGACCCTTCAAGTA 58.976 40.000 0.00 0.00 33.53 2.24
2287 2350 6.500751 AGGATTGAGTAAGACCCTTCAAGTAA 59.499 38.462 0.00 0.00 33.53 2.24
2288 2351 6.819146 GGATTGAGTAAGACCCTTCAAGTAAG 59.181 42.308 0.00 0.00 33.53 2.34
2289 2352 5.148651 TGAGTAAGACCCTTCAAGTAAGC 57.851 43.478 0.00 0.00 33.49 3.09
2290 2353 4.838986 TGAGTAAGACCCTTCAAGTAAGCT 59.161 41.667 0.00 0.00 33.49 3.74
2291 2354 5.153950 AGTAAGACCCTTCAAGTAAGCTG 57.846 43.478 0.00 0.00 33.49 4.24
2292 2355 4.593634 AGTAAGACCCTTCAAGTAAGCTGT 59.406 41.667 0.00 0.00 33.49 4.40
2293 2356 3.686916 AGACCCTTCAAGTAAGCTGTC 57.313 47.619 0.00 0.00 36.46 3.51
2294 2357 2.972713 AGACCCTTCAAGTAAGCTGTCA 59.027 45.455 0.00 0.00 37.66 3.58
2295 2358 3.584848 AGACCCTTCAAGTAAGCTGTCAT 59.415 43.478 0.00 0.00 37.66 3.06
2296 2359 3.935828 GACCCTTCAAGTAAGCTGTCATC 59.064 47.826 0.00 0.00 36.34 2.92
2297 2360 2.932614 CCCTTCAAGTAAGCTGTCATCG 59.067 50.000 0.00 0.00 33.49 3.84
2298 2361 3.368427 CCCTTCAAGTAAGCTGTCATCGA 60.368 47.826 0.00 0.00 33.49 3.59
2299 2362 4.437239 CCTTCAAGTAAGCTGTCATCGAT 58.563 43.478 0.00 0.00 33.49 3.59
2300 2363 4.269603 CCTTCAAGTAAGCTGTCATCGATG 59.730 45.833 19.61 19.61 33.49 3.84
2301 2364 3.190079 TCAAGTAAGCTGTCATCGATGC 58.810 45.455 20.81 15.45 0.00 3.91
2302 2365 2.931969 CAAGTAAGCTGTCATCGATGCA 59.068 45.455 20.81 18.88 0.00 3.96
2303 2366 3.465742 AGTAAGCTGTCATCGATGCAT 57.534 42.857 20.81 0.00 0.00 3.96
2304 2367 3.129109 AGTAAGCTGTCATCGATGCATG 58.871 45.455 20.81 12.70 0.00 4.06
2305 2368 0.661552 AAGCTGTCATCGATGCATGC 59.338 50.000 20.81 20.68 0.00 4.06
2306 2369 0.463116 AGCTGTCATCGATGCATGCA 60.463 50.000 25.04 25.04 0.00 3.96
2307 2370 0.379316 GCTGTCATCGATGCATGCAA 59.621 50.000 26.68 9.06 0.00 4.08
2308 2371 1.001706 GCTGTCATCGATGCATGCAAT 60.002 47.619 26.68 11.34 0.00 3.56
2309 2372 2.224784 GCTGTCATCGATGCATGCAATA 59.775 45.455 26.68 13.41 0.00 1.90
2310 2373 3.304190 GCTGTCATCGATGCATGCAATAA 60.304 43.478 26.68 13.02 0.00 1.40
2311 2374 4.790444 GCTGTCATCGATGCATGCAATAAA 60.790 41.667 26.68 11.10 0.00 1.40
2312 2375 5.246145 TGTCATCGATGCATGCAATAAAA 57.754 34.783 26.68 9.21 0.00 1.52
2313 2376 5.648572 TGTCATCGATGCATGCAATAAAAA 58.351 33.333 26.68 6.76 0.00 1.94
2314 2377 6.274579 TGTCATCGATGCATGCAATAAAAAT 58.725 32.000 26.68 5.83 0.00 1.82
2315 2378 6.757478 TGTCATCGATGCATGCAATAAAAATT 59.243 30.769 26.68 4.93 0.00 1.82
2316 2379 7.061027 GTCATCGATGCATGCAATAAAAATTG 58.939 34.615 26.68 10.29 34.79 2.32
2336 2399 7.644986 AATTGCTCTCTAAATACGTATGAGC 57.355 36.000 26.17 26.17 43.73 4.26
2337 2400 6.392625 TTGCTCTCTAAATACGTATGAGCT 57.607 37.500 29.65 12.83 43.79 4.09
2338 2401 7.506328 TTGCTCTCTAAATACGTATGAGCTA 57.494 36.000 29.65 24.19 43.79 3.32
2339 2402 7.689446 TGCTCTCTAAATACGTATGAGCTAT 57.311 36.000 29.65 7.62 43.79 2.97
2340 2403 8.112016 TGCTCTCTAAATACGTATGAGCTATT 57.888 34.615 29.65 15.78 43.79 1.73
2341 2404 9.227777 TGCTCTCTAAATACGTATGAGCTATTA 57.772 33.333 29.65 16.55 43.79 0.98
2342 2405 9.710979 GCTCTCTAAATACGTATGAGCTATTAG 57.289 37.037 25.85 19.65 41.26 1.73
2345 2408 9.279904 CTCTAAATACGTATGAGCTATTAGTGC 57.720 37.037 9.24 0.00 0.00 4.40
2346 2409 6.929587 AAATACGTATGAGCTATTAGTGCG 57.070 37.500 9.24 0.00 35.28 5.34
2347 2410 5.874895 ATACGTATGAGCTATTAGTGCGA 57.125 39.130 7.41 0.00 35.28 5.10
2348 2411 4.563337 ACGTATGAGCTATTAGTGCGAA 57.437 40.909 0.00 0.00 35.28 4.70
2349 2412 4.537965 ACGTATGAGCTATTAGTGCGAAG 58.462 43.478 0.00 0.00 35.28 3.79
2350 2413 4.275196 ACGTATGAGCTATTAGTGCGAAGA 59.725 41.667 0.00 0.00 35.28 2.87
2351 2414 5.212934 CGTATGAGCTATTAGTGCGAAGAA 58.787 41.667 0.00 0.00 35.28 2.52
2352 2415 5.685954 CGTATGAGCTATTAGTGCGAAGAAA 59.314 40.000 0.00 0.00 35.28 2.52
2353 2416 6.198403 CGTATGAGCTATTAGTGCGAAGAAAA 59.802 38.462 0.00 0.00 35.28 2.29
2354 2417 7.096023 CGTATGAGCTATTAGTGCGAAGAAAAT 60.096 37.037 0.00 0.00 35.28 1.82
2355 2418 9.193133 GTATGAGCTATTAGTGCGAAGAAAATA 57.807 33.333 0.00 0.00 35.28 1.40
2356 2419 8.662781 ATGAGCTATTAGTGCGAAGAAAATAA 57.337 30.769 0.00 0.00 35.28 1.40
2357 2420 8.131455 TGAGCTATTAGTGCGAAGAAAATAAG 57.869 34.615 0.00 0.00 35.28 1.73
2358 2421 6.949449 AGCTATTAGTGCGAAGAAAATAAGC 58.051 36.000 0.00 0.00 35.28 3.09
2359 2422 6.763610 AGCTATTAGTGCGAAGAAAATAAGCT 59.236 34.615 0.00 0.00 35.28 3.74
2360 2423 7.281100 AGCTATTAGTGCGAAGAAAATAAGCTT 59.719 33.333 3.48 3.48 35.28 3.74
2361 2424 7.910683 GCTATTAGTGCGAAGAAAATAAGCTTT 59.089 33.333 3.20 0.00 0.00 3.51
2366 2429 7.399523 AGTGCGAAGAAAATAAGCTTTATACG 58.600 34.615 3.20 2.07 0.00 3.06
2367 2430 7.277098 AGTGCGAAGAAAATAAGCTTTATACGA 59.723 33.333 3.20 0.00 0.00 3.43
2368 2431 7.901377 GTGCGAAGAAAATAAGCTTTATACGAA 59.099 33.333 3.20 0.00 0.00 3.85
2369 2432 7.901377 TGCGAAGAAAATAAGCTTTATACGAAC 59.099 33.333 3.20 0.00 0.00 3.95
2370 2433 8.114905 GCGAAGAAAATAAGCTTTATACGAACT 58.885 33.333 3.20 0.00 0.00 3.01
2371 2434 9.409949 CGAAGAAAATAAGCTTTATACGAACTG 57.590 33.333 3.20 0.00 0.00 3.16
2372 2435 9.704098 GAAGAAAATAAGCTTTATACGAACTGG 57.296 33.333 3.20 0.00 0.00 4.00
2373 2436 8.788325 AGAAAATAAGCTTTATACGAACTGGT 57.212 30.769 3.20 0.00 0.00 4.00
2374 2437 8.665685 AGAAAATAAGCTTTATACGAACTGGTG 58.334 33.333 3.20 0.00 0.00 4.17
2375 2438 8.556213 AAAATAAGCTTTATACGAACTGGTGA 57.444 30.769 3.20 0.00 0.00 4.02
2376 2439 8.732746 AAATAAGCTTTATACGAACTGGTGAT 57.267 30.769 3.20 0.00 0.00 3.06
2377 2440 9.826574 AAATAAGCTTTATACGAACTGGTGATA 57.173 29.630 3.20 0.00 0.00 2.15
2378 2441 9.477484 AATAAGCTTTATACGAACTGGTGATAG 57.523 33.333 3.20 0.00 0.00 2.08
2379 2442 6.710597 AGCTTTATACGAACTGGTGATAGA 57.289 37.500 0.00 0.00 0.00 1.98
2380 2443 6.740110 AGCTTTATACGAACTGGTGATAGAG 58.260 40.000 0.00 0.00 0.00 2.43
2381 2444 6.546403 AGCTTTATACGAACTGGTGATAGAGA 59.454 38.462 0.00 0.00 0.00 3.10
2382 2445 7.068348 AGCTTTATACGAACTGGTGATAGAGAA 59.932 37.037 0.00 0.00 0.00 2.87
2383 2446 7.380065 GCTTTATACGAACTGGTGATAGAGAAG 59.620 40.741 0.00 0.00 0.00 2.85
2384 2447 8.515695 TTTATACGAACTGGTGATAGAGAAGA 57.484 34.615 0.00 0.00 0.00 2.87
2385 2448 8.515695 TTATACGAACTGGTGATAGAGAAGAA 57.484 34.615 0.00 0.00 0.00 2.52
2386 2449 5.723672 ACGAACTGGTGATAGAGAAGAAA 57.276 39.130 0.00 0.00 0.00 2.52
2387 2450 6.287589 ACGAACTGGTGATAGAGAAGAAAT 57.712 37.500 0.00 0.00 0.00 2.17
2388 2451 7.406031 ACGAACTGGTGATAGAGAAGAAATA 57.594 36.000 0.00 0.00 0.00 1.40
2389 2452 7.837863 ACGAACTGGTGATAGAGAAGAAATAA 58.162 34.615 0.00 0.00 0.00 1.40
2390 2453 8.311836 ACGAACTGGTGATAGAGAAGAAATAAA 58.688 33.333 0.00 0.00 0.00 1.40
2391 2454 9.151471 CGAACTGGTGATAGAGAAGAAATAAAA 57.849 33.333 0.00 0.00 0.00 1.52
2393 2456 8.499403 ACTGGTGATAGAGAAGAAATAAAAGC 57.501 34.615 0.00 0.00 0.00 3.51
2394 2457 7.278868 ACTGGTGATAGAGAAGAAATAAAAGCG 59.721 37.037 0.00 0.00 0.00 4.68
2395 2458 7.327975 TGGTGATAGAGAAGAAATAAAAGCGA 58.672 34.615 0.00 0.00 0.00 4.93
2396 2459 7.277981 TGGTGATAGAGAAGAAATAAAAGCGAC 59.722 37.037 0.00 0.00 0.00 5.19
2397 2460 7.331055 GTGATAGAGAAGAAATAAAAGCGACG 58.669 38.462 0.00 0.00 0.00 5.12
2398 2461 6.475727 TGATAGAGAAGAAATAAAAGCGACGG 59.524 38.462 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.513692 CGATGTTGTTTTGAGTGGAGGTAA 59.486 41.667 0.00 0.00 0.00 2.85
120 123 3.153130 TCAATGATTGGGTCGAAAGCAA 58.847 40.909 5.20 0.00 0.00 3.91
133 136 7.940688 AGGAATTTTGGAAAGCTTTCAATGATT 59.059 29.630 33.88 26.26 38.92 2.57
139 142 6.484364 AAGAGGAATTTTGGAAAGCTTTCA 57.516 33.333 33.88 20.40 38.92 2.69
142 145 4.021981 CCGAAGAGGAATTTTGGAAAGCTT 60.022 41.667 0.00 0.00 45.00 3.74
150 153 2.890945 ACCCAACCGAAGAGGAATTTTG 59.109 45.455 0.00 0.00 45.00 2.44
197 200 0.316522 GCAGTCAGCAGAGTCAGTCA 59.683 55.000 0.00 0.00 44.79 3.41
297 300 1.353091 GGACCAGAAGAACACCCTCT 58.647 55.000 0.00 0.00 0.00 3.69
522 526 3.225940 AGAAAAGAGGGCCTTGAAGTTG 58.774 45.455 7.89 0.00 34.79 3.16
650 665 6.565435 GCGAGTAAAGGTGTAGGAAAACTTTC 60.565 42.308 0.00 0.00 33.79 2.62
674 689 2.440409 ACCTTGTCATCAATGGAGTGC 58.560 47.619 0.00 0.00 32.82 4.40
743 758 1.737029 GCAGCAGCATTAGACAGACGA 60.737 52.381 0.00 0.00 41.58 4.20
778 793 3.112842 CAGCAGCAACAGCACACA 58.887 55.556 0.00 0.00 0.00 3.72
793 811 1.542915 CACCTGTTGGAAATCCTGCAG 59.457 52.381 6.78 6.78 37.82 4.41
821 839 1.601419 GGTGAGGGACCGTTCATCGA 61.601 60.000 0.00 0.00 42.86 3.59
886 904 3.769300 TGAGGTTCGAAGGAATCATCAGA 59.231 43.478 0.00 0.00 35.65 3.27
903 921 2.224621 CCAGACAAAGTCATGGTGAGGT 60.225 50.000 0.00 0.00 34.60 3.85
1065 1083 2.815589 GCAGTTGGAAATGAGGTGGAGT 60.816 50.000 0.00 0.00 0.00 3.85
1077 1095 1.277842 TCCGCATAAGAGCAGTTGGAA 59.722 47.619 0.00 0.00 0.00 3.53
1097 1115 3.031013 CCCAAGGAAGACCAAACTTGTT 58.969 45.455 0.00 0.00 38.84 2.83
1225 1254 2.131183 GAGAGCATTTCTCGAATCCCG 58.869 52.381 0.00 0.00 46.44 5.14
1257 1286 1.273886 GTTCTGTGAGAGTGGTCCTCC 59.726 57.143 0.00 0.00 41.47 4.30
1315 1344 7.496747 TCTCCATTCTTTTTGAAACGGAAAAT 58.503 30.769 0.00 0.00 38.80 1.82
1341 1370 5.345418 AGCCATTGCCTAGGAGAGATATTA 58.655 41.667 14.75 0.00 38.69 0.98
1351 1380 4.273318 AGAAAGTTTAGCCATTGCCTAGG 58.727 43.478 3.67 3.67 38.69 3.02
1443 1475 6.524192 GCTTCCCCACCTGAATATATTACCAT 60.524 42.308 0.00 0.00 0.00 3.55
1504 1539 9.726232 CCAAATTGTCACTATTTGTAGATGATG 57.274 33.333 19.26 2.69 39.97 3.07
1527 1562 3.486383 CTTGGTCTTAACTTCCTGCCAA 58.514 45.455 0.00 0.00 34.01 4.52
1539 1574 4.844085 TCATTCCTCACTTCCTTGGTCTTA 59.156 41.667 0.00 0.00 0.00 2.10
1541 1576 3.251484 TCATTCCTCACTTCCTTGGTCT 58.749 45.455 0.00 0.00 0.00 3.85
1610 1652 1.069090 GCACAACACGGAGACCTCA 59.931 57.895 0.00 0.00 0.00 3.86
1621 1663 3.555324 TCTGGCGAGGGCACAACA 61.555 61.111 0.00 0.00 42.47 3.33
1624 1666 4.314440 GTGTCTGGCGAGGGCACA 62.314 66.667 15.32 2.84 42.47 4.57
1636 1678 2.910479 TGTCTGCCCGTCGTGTCT 60.910 61.111 0.00 0.00 0.00 3.41
1680 1724 4.803908 CTTCCTTCCAGCGCCCCC 62.804 72.222 2.29 0.00 0.00 5.40
1693 1737 1.916206 GCTCCCCCTTCCACTCTTCC 61.916 65.000 0.00 0.00 0.00 3.46
1732 1779 1.297967 CTGTCGTCGCCGATCAGAG 60.298 63.158 11.25 0.00 46.30 3.35
1738 1785 3.598715 ACCAACTGTCGTCGCCGA 61.599 61.111 0.00 0.00 41.73 5.54
1800 1861 2.941583 GCCCTCTTCCCCCAACCT 60.942 66.667 0.00 0.00 0.00 3.50
1822 1883 2.412037 GAACCACTCGAACCCGACGT 62.412 60.000 0.00 0.00 40.30 4.34
1834 1895 1.660575 CGAACTCGCACGAACCACT 60.661 57.895 0.00 0.00 0.00 4.00
1849 1910 2.915659 ACCCTCTCACCGCACGAA 60.916 61.111 0.00 0.00 0.00 3.85
1904 1965 2.677875 CCAGTTCCAAGCCCAGGC 60.678 66.667 0.00 0.00 42.33 4.85
1960 2022 1.161843 GCGTGGGAAAATTTCTCGGA 58.838 50.000 5.65 0.00 30.88 4.55
2024 2087 8.959548 TGTCATATTTTAATGAGTGCTCACAAT 58.040 29.630 3.80 4.15 43.11 2.71
2025 2088 8.334263 TGTCATATTTTAATGAGTGCTCACAA 57.666 30.769 3.80 0.00 43.11 3.33
2026 2089 7.920160 TGTCATATTTTAATGAGTGCTCACA 57.080 32.000 3.80 0.00 43.11 3.58
2027 2090 7.377928 GCATGTCATATTTTAATGAGTGCTCAC 59.622 37.037 3.80 0.00 43.11 3.51
2028 2091 7.283807 AGCATGTCATATTTTAATGAGTGCTCA 59.716 33.333 15.45 4.23 46.01 4.26
2029 2092 7.646314 AGCATGTCATATTTTAATGAGTGCTC 58.354 34.615 15.45 0.00 46.01 4.26
2030 2093 7.578310 AGCATGTCATATTTTAATGAGTGCT 57.422 32.000 15.45 15.45 45.18 4.40
2031 2094 9.734620 TTTAGCATGTCATATTTTAATGAGTGC 57.265 29.630 12.62 12.62 42.90 4.40
2043 2106 9.577110 CAACATCAACTTTTTAGCATGTCATAT 57.423 29.630 0.00 0.00 0.00 1.78
2044 2107 8.028354 CCAACATCAACTTTTTAGCATGTCATA 58.972 33.333 0.00 0.00 0.00 2.15
2045 2108 6.869913 CCAACATCAACTTTTTAGCATGTCAT 59.130 34.615 0.00 0.00 0.00 3.06
2046 2109 6.040278 TCCAACATCAACTTTTTAGCATGTCA 59.960 34.615 0.00 0.00 0.00 3.58
2047 2110 6.363357 GTCCAACATCAACTTTTTAGCATGTC 59.637 38.462 0.00 0.00 0.00 3.06
2048 2111 6.183360 TGTCCAACATCAACTTTTTAGCATGT 60.183 34.615 0.00 0.00 0.00 3.21
2049 2112 6.215121 TGTCCAACATCAACTTTTTAGCATG 58.785 36.000 0.00 0.00 0.00 4.06
2050 2113 6.403866 TGTCCAACATCAACTTTTTAGCAT 57.596 33.333 0.00 0.00 0.00 3.79
2051 2114 5.843673 TGTCCAACATCAACTTTTTAGCA 57.156 34.783 0.00 0.00 0.00 3.49
2052 2115 5.691754 CCTTGTCCAACATCAACTTTTTAGC 59.308 40.000 0.00 0.00 0.00 3.09
2053 2116 7.038154 TCCTTGTCCAACATCAACTTTTTAG 57.962 36.000 0.00 0.00 0.00 1.85
2054 2117 7.340743 TCTTCCTTGTCCAACATCAACTTTTTA 59.659 33.333 0.00 0.00 0.00 1.52
2055 2118 5.930837 TCCTTGTCCAACATCAACTTTTT 57.069 34.783 0.00 0.00 0.00 1.94
2056 2119 5.656416 TCTTCCTTGTCCAACATCAACTTTT 59.344 36.000 0.00 0.00 0.00 2.27
2057 2120 5.067805 GTCTTCCTTGTCCAACATCAACTTT 59.932 40.000 0.00 0.00 0.00 2.66
2058 2121 4.580580 GTCTTCCTTGTCCAACATCAACTT 59.419 41.667 0.00 0.00 0.00 2.66
2059 2122 4.137543 GTCTTCCTTGTCCAACATCAACT 58.862 43.478 0.00 0.00 0.00 3.16
2060 2123 3.882888 TGTCTTCCTTGTCCAACATCAAC 59.117 43.478 0.00 0.00 0.00 3.18
2061 2124 4.163441 TGTCTTCCTTGTCCAACATCAA 57.837 40.909 0.00 0.00 0.00 2.57
2062 2125 3.855255 TGTCTTCCTTGTCCAACATCA 57.145 42.857 0.00 0.00 0.00 3.07
2063 2126 4.137543 AGTTGTCTTCCTTGTCCAACATC 58.862 43.478 0.00 0.00 38.24 3.06
2064 2127 4.170468 AGTTGTCTTCCTTGTCCAACAT 57.830 40.909 0.00 0.00 38.24 2.71
2065 2128 3.644966 AGTTGTCTTCCTTGTCCAACA 57.355 42.857 0.00 0.00 38.24 3.33
2066 2129 6.438763 CATTAAGTTGTCTTCCTTGTCCAAC 58.561 40.000 0.00 0.00 36.52 3.77
2067 2130 5.534654 CCATTAAGTTGTCTTCCTTGTCCAA 59.465 40.000 0.00 0.00 35.36 3.53
2068 2131 5.070001 CCATTAAGTTGTCTTCCTTGTCCA 58.930 41.667 0.00 0.00 35.36 4.02
2069 2132 4.459337 CCCATTAAGTTGTCTTCCTTGTCC 59.541 45.833 0.00 0.00 35.36 4.02
2070 2133 5.070685 ACCCATTAAGTTGTCTTCCTTGTC 58.929 41.667 0.00 0.00 35.36 3.18
2071 2134 5.061721 ACCCATTAAGTTGTCTTCCTTGT 57.938 39.130 0.00 0.00 35.36 3.16
2072 2135 7.538575 CATAACCCATTAAGTTGTCTTCCTTG 58.461 38.462 0.00 0.00 35.36 3.61
2073 2136 6.152831 GCATAACCCATTAAGTTGTCTTCCTT 59.847 38.462 0.00 0.00 35.36 3.36
2074 2137 5.652452 GCATAACCCATTAAGTTGTCTTCCT 59.348 40.000 0.00 0.00 35.36 3.36
2075 2138 5.652452 AGCATAACCCATTAAGTTGTCTTCC 59.348 40.000 0.00 0.00 35.36 3.46
2076 2139 6.759497 AGCATAACCCATTAAGTTGTCTTC 57.241 37.500 0.00 0.00 35.36 2.87
2077 2140 7.309805 GGAAAGCATAACCCATTAAGTTGTCTT 60.310 37.037 0.00 0.00 37.65 3.01
2078 2141 6.152831 GGAAAGCATAACCCATTAAGTTGTCT 59.847 38.462 0.00 0.00 0.00 3.41
2079 2142 6.152831 AGGAAAGCATAACCCATTAAGTTGTC 59.847 38.462 0.00 0.00 0.00 3.18
2080 2143 6.016555 AGGAAAGCATAACCCATTAAGTTGT 58.983 36.000 0.00 0.00 0.00 3.32
2081 2144 6.530019 AGGAAAGCATAACCCATTAAGTTG 57.470 37.500 0.00 0.00 0.00 3.16
2083 2146 9.740710 GATATAGGAAAGCATAACCCATTAAGT 57.259 33.333 0.00 0.00 0.00 2.24
2084 2147 9.178758 GGATATAGGAAAGCATAACCCATTAAG 57.821 37.037 0.00 0.00 0.00 1.85
2085 2148 7.827236 CGGATATAGGAAAGCATAACCCATTAA 59.173 37.037 0.00 0.00 0.00 1.40
2086 2149 7.181305 TCGGATATAGGAAAGCATAACCCATTA 59.819 37.037 0.00 0.00 0.00 1.90
2087 2150 6.012858 TCGGATATAGGAAAGCATAACCCATT 60.013 38.462 0.00 0.00 0.00 3.16
2088 2151 5.487488 TCGGATATAGGAAAGCATAACCCAT 59.513 40.000 0.00 0.00 0.00 4.00
2089 2152 4.841813 TCGGATATAGGAAAGCATAACCCA 59.158 41.667 0.00 0.00 0.00 4.51
2090 2153 5.416271 TCGGATATAGGAAAGCATAACCC 57.584 43.478 0.00 0.00 0.00 4.11
2091 2154 6.128634 CGTTTCGGATATAGGAAAGCATAACC 60.129 42.308 1.91 0.00 33.19 2.85
2092 2155 6.423001 ACGTTTCGGATATAGGAAAGCATAAC 59.577 38.462 1.91 0.00 33.19 1.89
2093 2156 6.518493 ACGTTTCGGATATAGGAAAGCATAA 58.482 36.000 1.91 0.00 33.19 1.90
2094 2157 6.092955 ACGTTTCGGATATAGGAAAGCATA 57.907 37.500 1.91 0.00 33.19 3.14
2095 2158 4.957296 ACGTTTCGGATATAGGAAAGCAT 58.043 39.130 1.91 0.00 33.19 3.79
2096 2159 4.395959 ACGTTTCGGATATAGGAAAGCA 57.604 40.909 1.91 0.00 33.19 3.91
2097 2160 8.699283 ATATAACGTTTCGGATATAGGAAAGC 57.301 34.615 5.91 0.00 33.19 3.51
2099 2162 9.985730 ACAATATAACGTTTCGGATATAGGAAA 57.014 29.630 5.91 0.00 0.00 3.13
2105 2168 9.932207 TCCAATACAATATAACGTTTCGGATAT 57.068 29.630 5.91 0.33 0.00 1.63
2106 2169 9.932207 ATCCAATACAATATAACGTTTCGGATA 57.068 29.630 5.91 0.00 0.00 2.59
2107 2170 8.842358 ATCCAATACAATATAACGTTTCGGAT 57.158 30.769 5.91 0.00 0.00 4.18
2108 2171 7.927092 TGATCCAATACAATATAACGTTTCGGA 59.073 33.333 5.91 0.00 0.00 4.55
2109 2172 8.078959 TGATCCAATACAATATAACGTTTCGG 57.921 34.615 5.91 0.00 0.00 4.30
2110 2173 9.741168 GATGATCCAATACAATATAACGTTTCG 57.259 33.333 5.91 0.00 0.00 3.46
2112 2175 9.567776 TGGATGATCCAATACAATATAACGTTT 57.432 29.630 12.63 0.00 45.00 3.60
2137 2200 0.393820 AAGGCAAGCCCAACATGTTG 59.606 50.000 28.18 28.18 40.13 3.33
2138 2201 1.070601 GAAAGGCAAGCCCAACATGTT 59.929 47.619 4.92 4.92 36.58 2.71
2139 2202 0.681175 GAAAGGCAAGCCCAACATGT 59.319 50.000 7.62 0.00 36.58 3.21
2140 2203 0.037046 GGAAAGGCAAGCCCAACATG 60.037 55.000 7.62 0.00 36.58 3.21
2141 2204 1.194121 GGGAAAGGCAAGCCCAACAT 61.194 55.000 7.62 0.00 41.64 2.71
2142 2205 1.836604 GGGAAAGGCAAGCCCAACA 60.837 57.895 7.62 0.00 41.64 3.33
2143 2206 1.533994 AGGGAAAGGCAAGCCCAAC 60.534 57.895 7.62 0.00 44.55 3.77
2144 2207 1.228862 GAGGGAAAGGCAAGCCCAA 60.229 57.895 7.62 0.00 44.55 4.12
2145 2208 2.142292 GAGAGGGAAAGGCAAGCCCA 62.142 60.000 7.62 0.00 44.55 5.36
2146 2209 1.379176 GAGAGGGAAAGGCAAGCCC 60.379 63.158 7.62 0.00 42.37 5.19
2147 2210 0.033699 ATGAGAGGGAAAGGCAAGCC 60.034 55.000 2.02 2.02 0.00 4.35
2148 2211 1.101331 CATGAGAGGGAAAGGCAAGC 58.899 55.000 0.00 0.00 0.00 4.01
2149 2212 1.101331 GCATGAGAGGGAAAGGCAAG 58.899 55.000 0.00 0.00 0.00 4.01
2150 2213 0.700564 AGCATGAGAGGGAAAGGCAA 59.299 50.000 0.00 0.00 0.00 4.52
2151 2214 1.487976 CTAGCATGAGAGGGAAAGGCA 59.512 52.381 0.00 0.00 0.00 4.75
2152 2215 1.813477 GCTAGCATGAGAGGGAAAGGC 60.813 57.143 10.63 0.00 0.00 4.35
2153 2216 1.202746 GGCTAGCATGAGAGGGAAAGG 60.203 57.143 18.24 0.00 0.00 3.11
2154 2217 1.487976 TGGCTAGCATGAGAGGGAAAG 59.512 52.381 18.24 0.00 0.00 2.62
2155 2218 1.583556 TGGCTAGCATGAGAGGGAAA 58.416 50.000 18.24 0.00 0.00 3.13
2156 2219 1.583556 TTGGCTAGCATGAGAGGGAA 58.416 50.000 18.24 0.00 0.00 3.97
2157 2220 1.583556 TTTGGCTAGCATGAGAGGGA 58.416 50.000 18.24 0.00 0.00 4.20
2158 2221 2.653234 ATTTGGCTAGCATGAGAGGG 57.347 50.000 18.24 0.00 0.00 4.30
2159 2222 3.818180 AGAATTTGGCTAGCATGAGAGG 58.182 45.455 18.24 0.00 0.00 3.69
2160 2223 5.831702 AAAGAATTTGGCTAGCATGAGAG 57.168 39.130 18.24 0.00 36.60 3.20
2174 2237 8.860088 AGTATTTCTACTTGGTGCAAAGAATTT 58.140 29.630 5.15 0.00 34.65 1.82
2175 2238 8.409358 AGTATTTCTACTTGGTGCAAAGAATT 57.591 30.769 5.15 0.78 34.42 2.17
2176 2239 8.947115 GTAGTATTTCTACTTGGTGCAAAGAAT 58.053 33.333 5.15 0.00 43.93 2.40
2177 2240 8.319143 GTAGTATTTCTACTTGGTGCAAAGAA 57.681 34.615 5.15 0.00 43.93 2.52
2178 2241 7.900782 GTAGTATTTCTACTTGGTGCAAAGA 57.099 36.000 5.15 0.00 43.93 2.52
2190 2253 7.900782 TTGGAAGCACAAGTAGTATTTCTAC 57.099 36.000 0.00 0.00 46.68 2.59
2191 2254 7.934665 TGTTTGGAAGCACAAGTAGTATTTCTA 59.065 33.333 0.00 0.00 0.00 2.10
2192 2255 6.770785 TGTTTGGAAGCACAAGTAGTATTTCT 59.229 34.615 0.00 0.00 0.00 2.52
2193 2256 6.966021 TGTTTGGAAGCACAAGTAGTATTTC 58.034 36.000 0.00 0.00 0.00 2.17
2194 2257 6.952773 TGTTTGGAAGCACAAGTAGTATTT 57.047 33.333 0.00 0.00 0.00 1.40
2195 2258 6.151144 GGATGTTTGGAAGCACAAGTAGTATT 59.849 38.462 0.00 0.00 0.00 1.89
2196 2259 5.648092 GGATGTTTGGAAGCACAAGTAGTAT 59.352 40.000 0.00 0.00 0.00 2.12
2197 2260 5.001232 GGATGTTTGGAAGCACAAGTAGTA 58.999 41.667 0.00 0.00 0.00 1.82
2198 2261 3.821033 GGATGTTTGGAAGCACAAGTAGT 59.179 43.478 0.00 0.00 0.00 2.73
2199 2262 3.191371 GGGATGTTTGGAAGCACAAGTAG 59.809 47.826 0.00 0.00 0.00 2.57
2200 2263 3.153919 GGGATGTTTGGAAGCACAAGTA 58.846 45.455 0.00 0.00 0.00 2.24
2201 2264 1.963515 GGGATGTTTGGAAGCACAAGT 59.036 47.619 0.00 0.00 0.00 3.16
2202 2265 2.242043 AGGGATGTTTGGAAGCACAAG 58.758 47.619 0.00 0.00 0.00 3.16
2203 2266 2.380064 AGGGATGTTTGGAAGCACAA 57.620 45.000 0.00 0.00 0.00 3.33
2204 2267 2.380064 AAGGGATGTTTGGAAGCACA 57.620 45.000 0.00 0.00 0.00 4.57
2205 2268 4.556233 GTTTAAGGGATGTTTGGAAGCAC 58.444 43.478 0.00 0.00 0.00 4.40
2206 2269 3.576550 GGTTTAAGGGATGTTTGGAAGCA 59.423 43.478 0.00 0.00 0.00 3.91
2207 2270 3.576550 TGGTTTAAGGGATGTTTGGAAGC 59.423 43.478 0.00 0.00 0.00 3.86
2208 2271 5.799827 TTGGTTTAAGGGATGTTTGGAAG 57.200 39.130 0.00 0.00 0.00 3.46
2209 2272 6.755542 AATTGGTTTAAGGGATGTTTGGAA 57.244 33.333 0.00 0.00 0.00 3.53
2210 2273 6.755542 AAATTGGTTTAAGGGATGTTTGGA 57.244 33.333 0.00 0.00 0.00 3.53
2211 2274 6.293900 GCAAAATTGGTTTAAGGGATGTTTGG 60.294 38.462 0.00 0.00 0.00 3.28
2212 2275 6.293900 GGCAAAATTGGTTTAAGGGATGTTTG 60.294 38.462 0.00 0.00 0.00 2.93
2213 2276 5.767665 GGCAAAATTGGTTTAAGGGATGTTT 59.232 36.000 0.00 0.00 0.00 2.83
2214 2277 5.163152 TGGCAAAATTGGTTTAAGGGATGTT 60.163 36.000 0.00 0.00 0.00 2.71
2215 2278 4.349342 TGGCAAAATTGGTTTAAGGGATGT 59.651 37.500 0.00 0.00 0.00 3.06
2216 2279 4.904241 TGGCAAAATTGGTTTAAGGGATG 58.096 39.130 0.00 0.00 0.00 3.51
2217 2280 5.250313 TCATGGCAAAATTGGTTTAAGGGAT 59.750 36.000 0.00 0.00 0.00 3.85
2218 2281 4.594920 TCATGGCAAAATTGGTTTAAGGGA 59.405 37.500 0.00 0.00 0.00 4.20
2219 2282 4.904241 TCATGGCAAAATTGGTTTAAGGG 58.096 39.130 0.00 0.00 0.00 3.95
2220 2283 5.792741 TCTCATGGCAAAATTGGTTTAAGG 58.207 37.500 0.00 0.00 0.00 2.69
2221 2284 6.458210 ACTCTCATGGCAAAATTGGTTTAAG 58.542 36.000 0.00 0.00 0.00 1.85
2222 2285 6.418057 ACTCTCATGGCAAAATTGGTTTAA 57.582 33.333 0.00 0.00 0.00 1.52
2223 2286 5.047377 GGACTCTCATGGCAAAATTGGTTTA 60.047 40.000 0.00 0.00 0.00 2.01
2224 2287 4.262592 GGACTCTCATGGCAAAATTGGTTT 60.263 41.667 0.00 0.00 0.00 3.27
2225 2288 3.259123 GGACTCTCATGGCAAAATTGGTT 59.741 43.478 0.00 0.00 0.00 3.67
2226 2289 2.827921 GGACTCTCATGGCAAAATTGGT 59.172 45.455 0.00 0.00 0.00 3.67
2227 2290 2.827322 TGGACTCTCATGGCAAAATTGG 59.173 45.455 0.00 0.00 0.00 3.16
2228 2291 3.367703 GGTGGACTCTCATGGCAAAATTG 60.368 47.826 0.00 0.00 0.00 2.32
2229 2292 2.827921 GGTGGACTCTCATGGCAAAATT 59.172 45.455 0.00 0.00 0.00 1.82
2230 2293 2.225091 TGGTGGACTCTCATGGCAAAAT 60.225 45.455 0.00 0.00 0.00 1.82
2231 2294 1.144708 TGGTGGACTCTCATGGCAAAA 59.855 47.619 0.00 0.00 0.00 2.44
2232 2295 0.770499 TGGTGGACTCTCATGGCAAA 59.230 50.000 0.00 0.00 0.00 3.68
2233 2296 0.994247 ATGGTGGACTCTCATGGCAA 59.006 50.000 0.00 0.00 0.00 4.52
2234 2297 1.486310 GTATGGTGGACTCTCATGGCA 59.514 52.381 0.00 0.00 0.00 4.92
2235 2298 1.202698 GGTATGGTGGACTCTCATGGC 60.203 57.143 0.00 0.00 0.00 4.40
2236 2299 2.402564 AGGTATGGTGGACTCTCATGG 58.597 52.381 0.00 0.00 0.00 3.66
2237 2300 3.322254 GGTAGGTATGGTGGACTCTCATG 59.678 52.174 0.00 0.00 0.00 3.07
2238 2301 3.207777 AGGTAGGTATGGTGGACTCTCAT 59.792 47.826 0.00 0.00 0.00 2.90
2239 2302 2.585900 AGGTAGGTATGGTGGACTCTCA 59.414 50.000 0.00 0.00 0.00 3.27
2240 2303 3.315880 AGGTAGGTATGGTGGACTCTC 57.684 52.381 0.00 0.00 0.00 3.20
2241 2304 4.387664 CCTTAGGTAGGTATGGTGGACTCT 60.388 50.000 0.00 0.00 39.39 3.24
2242 2305 3.896272 CCTTAGGTAGGTATGGTGGACTC 59.104 52.174 0.00 0.00 39.39 3.36
2243 2306 3.534747 TCCTTAGGTAGGTATGGTGGACT 59.465 47.826 0.00 0.00 45.03 3.85
2244 2307 3.919834 TCCTTAGGTAGGTATGGTGGAC 58.080 50.000 0.00 0.00 45.03 4.02
2245 2308 4.845530 ATCCTTAGGTAGGTATGGTGGA 57.154 45.455 0.00 0.00 45.03 4.02
2246 2309 4.905456 TCAATCCTTAGGTAGGTATGGTGG 59.095 45.833 0.00 0.00 45.03 4.61
2247 2310 5.602978 ACTCAATCCTTAGGTAGGTATGGTG 59.397 44.000 0.00 0.00 45.03 4.17
2248 2311 5.789535 ACTCAATCCTTAGGTAGGTATGGT 58.210 41.667 0.00 0.00 45.03 3.55
2249 2312 7.728981 TCTTACTCAATCCTTAGGTAGGTATGG 59.271 40.741 0.00 0.00 45.03 2.74
2250 2313 8.578151 GTCTTACTCAATCCTTAGGTAGGTATG 58.422 40.741 0.00 0.26 45.03 2.39
2251 2314 7.729431 GGTCTTACTCAATCCTTAGGTAGGTAT 59.271 40.741 0.00 0.00 45.03 2.73
2252 2315 7.065504 GGTCTTACTCAATCCTTAGGTAGGTA 58.934 42.308 0.00 0.00 45.03 3.08
2253 2316 5.898397 GGTCTTACTCAATCCTTAGGTAGGT 59.102 44.000 0.00 0.00 45.03 3.08
2254 2317 5.304871 GGGTCTTACTCAATCCTTAGGTAGG 59.695 48.000 0.00 0.00 46.27 3.18
2255 2318 6.137559 AGGGTCTTACTCAATCCTTAGGTAG 58.862 44.000 0.00 0.00 0.00 3.18
2256 2319 6.101274 AGGGTCTTACTCAATCCTTAGGTA 57.899 41.667 0.00 0.00 0.00 3.08
2257 2320 4.961585 AGGGTCTTACTCAATCCTTAGGT 58.038 43.478 0.00 0.00 0.00 3.08
2258 2321 5.425539 TGAAGGGTCTTACTCAATCCTTAGG 59.574 44.000 0.00 0.00 35.07 2.69
2259 2322 6.546428 TGAAGGGTCTTACTCAATCCTTAG 57.454 41.667 0.00 0.00 35.07 2.18
2260 2323 6.500751 ACTTGAAGGGTCTTACTCAATCCTTA 59.499 38.462 0.00 0.00 35.07 2.69
2261 2324 5.310857 ACTTGAAGGGTCTTACTCAATCCTT 59.689 40.000 0.00 0.00 37.32 3.36
2262 2325 4.846940 ACTTGAAGGGTCTTACTCAATCCT 59.153 41.667 0.00 0.00 0.00 3.24
2263 2326 5.167303 ACTTGAAGGGTCTTACTCAATCC 57.833 43.478 0.00 0.00 0.00 3.01
2264 2327 6.314152 GCTTACTTGAAGGGTCTTACTCAATC 59.686 42.308 0.00 0.00 35.49 2.67
2265 2328 6.013293 AGCTTACTTGAAGGGTCTTACTCAAT 60.013 38.462 0.00 0.00 35.49 2.57
2266 2329 5.307196 AGCTTACTTGAAGGGTCTTACTCAA 59.693 40.000 0.00 0.00 35.49 3.02
2267 2330 4.838986 AGCTTACTTGAAGGGTCTTACTCA 59.161 41.667 0.00 0.00 35.49 3.41
2268 2331 5.172205 CAGCTTACTTGAAGGGTCTTACTC 58.828 45.833 0.00 0.00 35.49 2.59
2269 2332 4.593634 ACAGCTTACTTGAAGGGTCTTACT 59.406 41.667 0.00 0.00 35.49 2.24
2270 2333 4.895961 ACAGCTTACTTGAAGGGTCTTAC 58.104 43.478 0.00 0.00 35.49 2.34
2271 2334 4.591498 TGACAGCTTACTTGAAGGGTCTTA 59.409 41.667 0.00 0.00 35.49 2.10
2272 2335 3.391296 TGACAGCTTACTTGAAGGGTCTT 59.609 43.478 0.00 0.00 35.49 3.01
2273 2336 2.972713 TGACAGCTTACTTGAAGGGTCT 59.027 45.455 0.00 0.00 35.49 3.85
2274 2337 3.402628 TGACAGCTTACTTGAAGGGTC 57.597 47.619 0.00 0.00 35.49 4.46
2275 2338 3.617531 CGATGACAGCTTACTTGAAGGGT 60.618 47.826 0.00 0.00 35.49 4.34
2276 2339 2.932614 CGATGACAGCTTACTTGAAGGG 59.067 50.000 0.00 0.00 35.49 3.95
2277 2340 3.849911 TCGATGACAGCTTACTTGAAGG 58.150 45.455 0.00 0.00 35.49 3.46
2278 2341 4.260132 GCATCGATGACAGCTTACTTGAAG 60.260 45.833 29.20 0.00 38.30 3.02
2279 2342 3.618594 GCATCGATGACAGCTTACTTGAA 59.381 43.478 29.20 0.00 0.00 2.69
2280 2343 3.190079 GCATCGATGACAGCTTACTTGA 58.810 45.455 29.20 0.00 0.00 3.02
2281 2344 2.931969 TGCATCGATGACAGCTTACTTG 59.068 45.455 29.20 0.00 0.00 3.16
2282 2345 3.251479 TGCATCGATGACAGCTTACTT 57.749 42.857 29.20 0.00 0.00 2.24
2283 2346 2.967599 TGCATCGATGACAGCTTACT 57.032 45.000 29.20 0.00 0.00 2.24
2284 2347 2.349249 GCATGCATCGATGACAGCTTAC 60.349 50.000 29.20 8.89 0.00 2.34
2285 2348 1.869132 GCATGCATCGATGACAGCTTA 59.131 47.619 29.20 5.69 0.00 3.09
2286 2349 0.661552 GCATGCATCGATGACAGCTT 59.338 50.000 29.20 8.70 0.00 3.74
2287 2350 0.463116 TGCATGCATCGATGACAGCT 60.463 50.000 29.20 9.41 0.00 4.24
2288 2351 0.379316 TTGCATGCATCGATGACAGC 59.621 50.000 29.20 24.77 0.00 4.40
2289 2352 4.477302 TTATTGCATGCATCGATGACAG 57.523 40.909 29.20 16.73 0.00 3.51
2290 2353 4.897025 TTTATTGCATGCATCGATGACA 57.103 36.364 29.20 23.78 0.00 3.58
2291 2354 6.758593 ATTTTTATTGCATGCATCGATGAC 57.241 33.333 29.20 19.21 0.00 3.06
2292 2355 7.167831 CAATTTTTATTGCATGCATCGATGA 57.832 32.000 29.20 14.08 0.00 2.92
2310 2373 8.552034 GCTCATACGTATTTAGAGAGCAATTTT 58.448 33.333 27.17 0.00 44.60 1.82
2311 2374 7.928706 AGCTCATACGTATTTAGAGAGCAATTT 59.071 33.333 30.63 17.00 46.86 1.82
2312 2375 7.437748 AGCTCATACGTATTTAGAGAGCAATT 58.562 34.615 30.63 17.25 46.86 2.32
2313 2376 6.987386 AGCTCATACGTATTTAGAGAGCAAT 58.013 36.000 30.63 17.75 46.86 3.56
2314 2377 6.392625 AGCTCATACGTATTTAGAGAGCAA 57.607 37.500 30.63 0.00 46.86 3.91
2315 2378 7.689446 ATAGCTCATACGTATTTAGAGAGCA 57.311 36.000 30.63 21.98 46.86 4.26
2316 2379 9.710979 CTAATAGCTCATACGTATTTAGAGAGC 57.289 37.037 25.83 25.83 45.32 4.09
2319 2382 9.279904 GCACTAATAGCTCATACGTATTTAGAG 57.720 37.037 21.06 17.83 0.00 2.43
2320 2383 7.961283 CGCACTAATAGCTCATACGTATTTAGA 59.039 37.037 21.06 10.35 0.00 2.10
2321 2384 7.961283 TCGCACTAATAGCTCATACGTATTTAG 59.039 37.037 15.84 15.84 0.00 1.85
2322 2385 7.809665 TCGCACTAATAGCTCATACGTATTTA 58.190 34.615 5.03 0.39 0.00 1.40
2323 2386 6.675026 TCGCACTAATAGCTCATACGTATTT 58.325 36.000 5.03 0.00 0.00 1.40
2324 2387 6.250344 TCGCACTAATAGCTCATACGTATT 57.750 37.500 5.03 0.00 0.00 1.89
2325 2388 5.874895 TCGCACTAATAGCTCATACGTAT 57.125 39.130 1.14 1.14 0.00 3.06
2326 2389 5.467735 TCTTCGCACTAATAGCTCATACGTA 59.532 40.000 0.00 0.00 0.00 3.57
2327 2390 4.275196 TCTTCGCACTAATAGCTCATACGT 59.725 41.667 0.00 0.00 0.00 3.57
2328 2391 4.784329 TCTTCGCACTAATAGCTCATACG 58.216 43.478 0.00 0.00 0.00 3.06
2329 2392 7.464830 TTTTCTTCGCACTAATAGCTCATAC 57.535 36.000 0.00 0.00 0.00 2.39
2330 2393 9.758651 TTATTTTCTTCGCACTAATAGCTCATA 57.241 29.630 0.00 0.00 0.00 2.15
2331 2394 8.662781 TTATTTTCTTCGCACTAATAGCTCAT 57.337 30.769 0.00 0.00 0.00 2.90
2332 2395 7.254455 GCTTATTTTCTTCGCACTAATAGCTCA 60.254 37.037 0.00 0.00 0.00 4.26
2333 2396 7.042389 AGCTTATTTTCTTCGCACTAATAGCTC 60.042 37.037 0.00 0.00 0.00 4.09
2334 2397 6.763610 AGCTTATTTTCTTCGCACTAATAGCT 59.236 34.615 0.00 0.00 0.00 3.32
2335 2398 6.949449 AGCTTATTTTCTTCGCACTAATAGC 58.051 36.000 0.00 0.00 0.00 2.97
2340 2403 8.537223 CGTATAAAGCTTATTTTCTTCGCACTA 58.463 33.333 0.00 0.00 0.00 2.74
2341 2404 7.277098 TCGTATAAAGCTTATTTTCTTCGCACT 59.723 33.333 0.00 0.00 0.00 4.40
2342 2405 7.396419 TCGTATAAAGCTTATTTTCTTCGCAC 58.604 34.615 0.00 0.00 0.00 5.34
2343 2406 7.528481 TCGTATAAAGCTTATTTTCTTCGCA 57.472 32.000 0.00 0.00 0.00 5.10
2344 2407 8.114905 AGTTCGTATAAAGCTTATTTTCTTCGC 58.885 33.333 0.00 0.00 0.00 4.70
2345 2408 9.409949 CAGTTCGTATAAAGCTTATTTTCTTCG 57.590 33.333 0.00 0.00 0.00 3.79
2346 2409 9.704098 CCAGTTCGTATAAAGCTTATTTTCTTC 57.296 33.333 0.00 0.00 0.00 2.87
2347 2410 9.227777 ACCAGTTCGTATAAAGCTTATTTTCTT 57.772 29.630 0.00 0.00 0.00 2.52
2348 2411 8.665685 CACCAGTTCGTATAAAGCTTATTTTCT 58.334 33.333 0.00 0.00 0.00 2.52
2349 2412 8.662141 TCACCAGTTCGTATAAAGCTTATTTTC 58.338 33.333 0.00 0.00 0.00 2.29
2350 2413 8.556213 TCACCAGTTCGTATAAAGCTTATTTT 57.444 30.769 0.00 0.00 0.00 1.82
2351 2414 8.732746 ATCACCAGTTCGTATAAAGCTTATTT 57.267 30.769 0.00 0.00 0.00 1.40
2352 2415 9.477484 CTATCACCAGTTCGTATAAAGCTTATT 57.523 33.333 0.00 0.00 0.00 1.40
2353 2416 8.857098 TCTATCACCAGTTCGTATAAAGCTTAT 58.143 33.333 0.00 0.00 0.00 1.73
2354 2417 8.229253 TCTATCACCAGTTCGTATAAAGCTTA 57.771 34.615 0.00 0.00 0.00 3.09
2355 2418 7.068348 TCTCTATCACCAGTTCGTATAAAGCTT 59.932 37.037 0.00 0.00 0.00 3.74
2356 2419 6.546403 TCTCTATCACCAGTTCGTATAAAGCT 59.454 38.462 0.00 0.00 0.00 3.74
2357 2420 6.736123 TCTCTATCACCAGTTCGTATAAAGC 58.264 40.000 0.00 0.00 0.00 3.51
2358 2421 8.622157 TCTTCTCTATCACCAGTTCGTATAAAG 58.378 37.037 0.00 0.00 0.00 1.85
2359 2422 8.515695 TCTTCTCTATCACCAGTTCGTATAAA 57.484 34.615 0.00 0.00 0.00 1.40
2360 2423 8.515695 TTCTTCTCTATCACCAGTTCGTATAA 57.484 34.615 0.00 0.00 0.00 0.98
2361 2424 8.515695 TTTCTTCTCTATCACCAGTTCGTATA 57.484 34.615 0.00 0.00 0.00 1.47
2362 2425 7.406031 TTTCTTCTCTATCACCAGTTCGTAT 57.594 36.000 0.00 0.00 0.00 3.06
2363 2426 6.829229 TTTCTTCTCTATCACCAGTTCGTA 57.171 37.500 0.00 0.00 0.00 3.43
2364 2427 5.723672 TTTCTTCTCTATCACCAGTTCGT 57.276 39.130 0.00 0.00 0.00 3.85
2365 2428 8.703604 TTTATTTCTTCTCTATCACCAGTTCG 57.296 34.615 0.00 0.00 0.00 3.95
2367 2430 8.951243 GCTTTTATTTCTTCTCTATCACCAGTT 58.049 33.333 0.00 0.00 0.00 3.16
2368 2431 7.278868 CGCTTTTATTTCTTCTCTATCACCAGT 59.721 37.037 0.00 0.00 0.00 4.00
2369 2432 7.492669 TCGCTTTTATTTCTTCTCTATCACCAG 59.507 37.037 0.00 0.00 0.00 4.00
2370 2433 7.277981 GTCGCTTTTATTTCTTCTCTATCACCA 59.722 37.037 0.00 0.00 0.00 4.17
2371 2434 7.515371 CGTCGCTTTTATTTCTTCTCTATCACC 60.515 40.741 0.00 0.00 0.00 4.02
2372 2435 7.331055 CGTCGCTTTTATTTCTTCTCTATCAC 58.669 38.462 0.00 0.00 0.00 3.06
2373 2436 6.475727 CCGTCGCTTTTATTTCTTCTCTATCA 59.524 38.462 0.00 0.00 0.00 2.15
2374 2437 6.868430 CCGTCGCTTTTATTTCTTCTCTATC 58.132 40.000 0.00 0.00 0.00 2.08
2375 2438 6.830114 CCGTCGCTTTTATTTCTTCTCTAT 57.170 37.500 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.