AutoCloner

Multiple sequence alignment - TraesCS4B01G203400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G203400	chr4B	100.000	2552	0	0	1	2552	434712914	434715465	0.000000e+00	4713.0
1	TraesCS4B01G203400	chr4D	92.939	1133	43	19	840	1947	351736946	351738066	0.000000e+00	1615.0
2	TraesCS4B01G203400	chr4D	90.522	823	30	21	1	810	351736160	351736947	0.000000e+00	1044.0
3	TraesCS4B01G203400	chr4D	86.195	297	21	9	1001	1287	351687987	351688273	1.150000e-78	303.0
4	TraesCS4B01G203400	chr4A	92.768	1120	51	17	840	1947	113506112	113505011	0.000000e+00	1592.0
5	TraesCS4B01G203400	chr4A	92.102	823	47	15	1	810	113506928	113506111	0.000000e+00	1144.0
6	TraesCS4B01G203400	chr4A	95.380	606	24	4	1948	2552	743670678	743670076	0.000000e+00	961.0
7	TraesCS4B01G203400	chr4A	80.977	778	82	36	819	1550	113580130	113579373	7.980000e-155	556.0
8	TraesCS4B01G203400	chr5B	95.888	608	22	2	1946	2552	569217413	569218018	0.000000e+00	981.0
9	TraesCS4B01G203400	chr5B	96.022	553	17	3	2001	2552	569340902	569341450	0.000000e+00	894.0
10	TraesCS4B01G203400	chr5B	93.651	126	6	2	2389	2513	594552190	594552066	1.210000e-43	187.0
11	TraesCS4B01G203400	chr2B	94.910	609	28	3	1946	2552	164866031	164866638	0.000000e+00	950.0
12	TraesCS4B01G203400	chr2B	94.828	58	3	0	1179	1236	9725028	9724971	9.720000e-15	91.6
13	TraesCS4B01G203400	chr3D	95.197	458	17	4	1938	2392	330070974	330070519	0.000000e+00	719.0
14	TraesCS4B01G203400	chr3D	83.740	123	16	4	1232	1352	461313437	461313317	2.080000e-21	113.0
15	TraesCS4B01G203400	chr3D	96.610	59	2	0	2494	2552	330070522	330070464	5.810000e-17	99.0
16	TraesCS4B01G203400	chr1D	95.344	451	17	2	1946	2392	62720174	62720624	0.000000e+00	713.0
17	TraesCS4B01G203400	chr1D	84.932	219	22	6	1144	1361	20061997	20062205	7.150000e-51	211.0
18	TraesCS4B01G203400	chr1D	96.610	59	2	0	2494	2552	62720621	62720679	5.810000e-17	99.0
19	TraesCS4B01G203400	chr5D	95.526	447	16	3	1948	2392	242849404	242849848	0.000000e+00	712.0
20	TraesCS4B01G203400	chr5D	94.828	116	6	0	2385	2500	532242499	532242614	5.610000e-42	182.0
21	TraesCS4B01G203400	chr5D	98.305	59	1	0	2494	2552	242849845	242849903	1.250000e-18	104.0
22	TraesCS4B01G203400	chr2A	94.323	458	21	4	1938	2392	139903769	139904224	0.000000e+00	697.0
23	TraesCS4B01G203400	chr2A	93.443	122	7	1	2384	2504	41656374	41656253	2.020000e-41	180.0
24	TraesCS4B01G203400	chr2A	88.372	86	10	0	1151	1236	1365033	1364948	1.250000e-18	104.0
25	TraesCS4B01G203400	chr3A	94.157	445	20	5	1952	2392	707112565	707112123	0.000000e+00	673.0
26	TraesCS4B01G203400	chr3A	86.239	109	13	2	1244	1352	603895557	603895451	1.600000e-22	117.0
27	TraesCS4B01G203400	chr3A	83.740	123	16	4	1232	1352	603813806	603813686	2.080000e-21	113.0
28	TraesCS4B01G203400	chr6B	96.429	112	4	0	2385	2496	20752493	20752604	4.340000e-43	185.0
29	TraesCS4B01G203400	chr6D	94.872	117	5	1	2379	2495	99226296	99226181	5.610000e-42	182.0
30	TraesCS4B01G203400	chr6D	96.610	59	2	0	2494	2552	472156536	472156478	5.810000e-17	99.0
31	TraesCS4B01G203400	chr3B	82.812	128	20	2	1244	1371	612360005	612359880	2.080000e-21	113.0
32	TraesCS4B01G203400	chr3B	85.321	109	14	2	1244	1352	612104015	612103909	7.460000e-21	111.0
33	TraesCS4B01G203400	chr5A	98.305	59	1	0	2494	2552	283578253	283578195	1.250000e-18	104.0
34	TraesCS4B01G203400	chr5A	83.544	79	11	2	1145	1222	651528234	651528157	3.520000e-09	73.1
35	TraesCS4B01G203400	chr1B	97.561	41	1	0	52	92	587035903	587035943	1.270000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G203400	chr4B	434712914	434715465	2551	False	4713.0	4713	100.0000	1	2552	1	chr4B.!!$F1	2551
1	TraesCS4B01G203400	chr4D	351736160	351738066	1906	False	1329.5	1615	91.7305	1	1947	2	chr4D.!!$F2	1946
2	TraesCS4B01G203400	chr4A	113505011	113506928	1917	True	1368.0	1592	92.4350	1	1947	2	chr4A.!!$R3	1946
3	TraesCS4B01G203400	chr4A	743670076	743670678	602	True	961.0	961	95.3800	1948	2552	1	chr4A.!!$R2	604
4	TraesCS4B01G203400	chr4A	113579373	113580130	757	True	556.0	556	80.9770	819	1550	1	chr4A.!!$R1	731
5	TraesCS4B01G203400	chr5B	569217413	569218018	605	False	981.0	981	95.8880	1946	2552	1	chr5B.!!$F1	606
6	TraesCS4B01G203400	chr5B	569340902	569341450	548	False	894.0	894	96.0220	2001	2552	1	chr5B.!!$F2	551
7	TraesCS4B01G203400	chr2B	164866031	164866638	607	False	950.0	950	94.9100	1946	2552	1	chr2B.!!$F1	606
8	TraesCS4B01G203400	chr3D	330070464	330070974	510	True	409.0	719	95.9035	1938	2552	2	chr3D.!!$R2	614
9	TraesCS4B01G203400	chr1D	62720174	62720679	505	False	406.0	713	95.9770	1946	2552	2	chr1D.!!$F2	606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
531	548	0.1792	CCCGAACGAAAAAGCCATCG	60.179	55.0	0.0	0.0	44.33	3.84	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1785	1874	0.179001	AAAACTGAACTCCCCCGTGG	60.179	55.0	0.0	0.0	0.0	4.94	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
161	169	2.365617	ACTGGTACCGGATCTAGCATTG	59.634	50.000	27.93	0.00	0.00	2.82
230	242	8.380644	ACACTATGTTCGTTATCTTTTCGAATG	58.619	33.333	0.00	0.00	43.50	2.67
274	291	0.238289	GTCACAGCAAACGACCATGG	59.762	55.000	11.19	11.19	0.00	3.66
283	300	3.347216	CAAACGACCATGGAAAGGATCT	58.653	45.455	21.47	0.00	0.00	2.75
286	303	3.610911	ACGACCATGGAAAGGATCTTTC	58.389	45.455	21.47	10.86	0.00	2.62
411	428	1.300465	CGATCAGGATCAGTGGGCG	60.300	63.158	9.72	0.00	37.69	6.13
493	510	6.348540	GGTTTATATCCTATGGAAAAGCAGCG	60.349	42.308	6.58	0.00	34.34	5.18
494	511	1.972872	ATCCTATGGAAAAGCAGCGG	58.027	50.000	0.00	0.00	34.34	5.52
531	548	0.179200	CCCGAACGAAAAAGCCATCG	60.179	55.000	0.00	0.00	44.33	3.84
544	561	1.357258	GCCATCGTCAGTCAGCACAG	61.357	60.000	0.00	0.00	0.00	3.66
546	563	0.668401	CATCGTCAGTCAGCACAGCA	60.668	55.000	0.00	0.00	0.00	4.41
548	565	1.300465	CGTCAGTCAGCACAGCACT	60.300	57.895	0.00	0.00	0.00	4.40
549	566	1.280886	CGTCAGTCAGCACAGCACTC	61.281	60.000	0.00	0.00	0.00	3.51
550	567	0.249615	GTCAGTCAGCACAGCACTCA	60.250	55.000	0.00	0.00	0.00	3.41
562	584	4.696455	CACAGCACTCATCACACCATATA	58.304	43.478	0.00	0.00	0.00	0.86
808	834	3.635734	CTCGCGCGCCTTGACAAAG	62.636	63.158	27.95	10.23	0.00	2.77
812	838	2.637025	GCGCCTTGACAAAGCGAA	59.363	55.556	30.04	0.00	35.99	4.70
813	839	1.008995	GCGCCTTGACAAAGCGAAA	60.009	52.632	30.04	0.00	35.99	3.46
814	840	0.998727	GCGCCTTGACAAAGCGAAAG	60.999	55.000	30.04	6.25	35.99	2.62
899	925	1.745264	CGCCAGATCCTCTCTTCCC	59.255	63.158	0.00	0.00	29.16	3.97
905	931	1.062505	AGATCCTCTCTTCCCCTCACC	60.063	57.143	0.00	0.00	0.00	4.02
941	972	2.436596	AAAGCACCTGCCCATCAGCT	62.437	55.000	0.00	0.00	43.38	4.24
950	990	1.101331	GCCCATCAGCTTTCCTTCTG	58.899	55.000	0.00	0.00	0.00	3.02
968	1008	2.823747	TCTGCTAGCTTTGTCTCGGTTA	59.176	45.455	17.23	0.00	0.00	2.85
976	1016	3.062774	GCTTTGTCTCGGTTATCTTCTGC	59.937	47.826	0.00	0.00	0.00	4.26
1418	1471	4.891727	CATCGGGCCGAACGAGGG	62.892	72.222	34.58	14.07	44.24	4.30
1434	1487	4.056125	GGCGGCAACAAGAAGGCC	62.056	66.667	3.07	0.00	44.27	5.19
1438	1491	3.353836	GCAACAAGAAGGCCGCGA	61.354	61.111	8.23	0.00	0.00	5.87
1488	1556	3.005539	GCACTGGAGGAGGAGCCA	61.006	66.667	0.00	0.00	40.02	4.75
1559	1637	4.047142	GACTTTCGACGTTAGGTTGAACT	58.953	43.478	7.18	0.00	46.37	3.01
1625	1706	8.327429	CAATACGTATTTGGAATTTTGGATTGC	58.673	33.333	18.06	0.00	0.00	3.56
1632	1713	2.159254	GGAATTTTGGATTGCGCTGCTA	60.159	45.455	9.73	0.00	0.00	3.49
1691	1776	6.684686	TGGCTCGCGTATATACTTTTCTAAT	58.315	36.000	5.77	0.00	0.00	1.73
1719	1804	2.853077	GGGGCAGGGGCTCTATATTTAT	59.147	50.000	0.00	0.00	41.58	1.40
1772	1861	2.495084	AGACGGGTTTTTCTCTTCTGC	58.505	47.619	0.00	0.00	0.00	4.26
1773	1862	2.104963	AGACGGGTTTTTCTCTTCTGCT	59.895	45.455	0.00	0.00	0.00	4.24
1785	1874	1.630878	TCTTCTGCTCTCCCCCTTTTC	59.369	52.381	0.00	0.00	0.00	2.29
1787	1876	0.475632	TCTGCTCTCCCCCTTTTCCA	60.476	55.000	0.00	0.00	0.00	3.53
1788	1877	0.322906	CTGCTCTCCCCCTTTTCCAC	60.323	60.000	0.00	0.00	0.00	4.02
1789	1878	1.377333	GCTCTCCCCCTTTTCCACG	60.377	63.158	0.00	0.00	0.00	4.94
1825	1915	4.972751	TTTTTATGCTCCTTGGCCTTTT	57.027	36.364	3.32	0.00	0.00	2.27
1826	1916	4.972751	TTTTATGCTCCTTGGCCTTTTT	57.027	36.364	3.32	0.00	0.00	1.94
1864	1961	7.254795	GCGTATGAATATTGCTGTAAACCTCTT	60.255	37.037	0.00	0.00	0.00	2.85
1937	2034	6.537453	TTTGTGGGTTCTTTGAAATCAAGA	57.463	33.333	0.00	0.00	37.15	3.02
2003	2100	6.522625	TTTTGGTCTCATTCACTTTGTCAA	57.477	33.333	0.00	0.00	0.00	3.18
2045	2142	0.867753	ATTCGTGCGAGATGAGCGAC	60.868	55.000	0.00	0.00	37.44	5.19
2050	2147	3.518998	CGAGATGAGCGACCCGGT	61.519	66.667	0.00	0.00	41.33	5.28
2203	2302	5.252969	AGCATCATTGTCGCATTTGTATT	57.747	34.783	0.00	0.00	0.00	1.89
2234	2334	0.657312	TGTCTTCAGCAGCGTTGTTG	59.343	50.000	9.80	9.80	36.92	3.33
2251	2351	6.348213	GCGTTGTTGCTTTTTCCTAAGAGATA	60.348	38.462	0.00	0.00	0.00	1.98
2481	2586	5.883115	TCCATTTATGCGACAAGTAATTCCA	59.117	36.000	0.00	0.00	0.00	3.53
2521	2626	5.611796	ACATGCAACTGTATGTGTTGTAG	57.388	39.130	11.94	0.00	46.87	2.74

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	0.892063	AGCACCACACCGTTTTGTTT	59.108	45.000	0.00	0.00	0.00	2.83
44	45	1.752683	TAGCACCACACCGTTTTGTT	58.247	45.000	0.00	0.00	0.00	2.83
46	47	2.098443	ACTTTAGCACCACACCGTTTTG	59.902	45.455	0.00	0.00	0.00	2.44
50	51	1.305201	CAACTTTAGCACCACACCGT	58.695	50.000	0.00	0.00	0.00	4.83
51	52	0.591170	CCAACTTTAGCACCACACCG	59.409	55.000	0.00	0.00	0.00	4.94
53	54	1.880027	CCTCCAACTTTAGCACCACAC	59.120	52.381	0.00	0.00	0.00	3.82
54	55	1.493022	ACCTCCAACTTTAGCACCACA	59.507	47.619	0.00	0.00	0.00	4.17
55	56	2.271944	ACCTCCAACTTTAGCACCAC	57.728	50.000	0.00	0.00	0.00	4.16
56	57	2.290071	GCTACCTCCAACTTTAGCACCA	60.290	50.000	0.00	0.00	37.49	4.17
57	58	2.027100	AGCTACCTCCAACTTTAGCACC	60.027	50.000	2.56	0.00	39.59	5.01
230	242	0.247460	GAGCTTTCATTTGTGCCCCC	59.753	55.000	0.00	0.00	0.00	5.40
274	291	2.226437	TGTTGCTGCGAAAGATCCTTTC	59.774	45.455	8.87	8.87	0.00	2.62
283	300	4.027295	CGTTATTTTGTTGTTGCTGCGAAA	60.027	37.500	0.00	0.00	0.00	3.46
286	303	3.039405	TCGTTATTTTGTTGTTGCTGCG	58.961	40.909	0.00	0.00	0.00	5.18
387	404	2.288702	CCACTGATCCTGATCGATCACC	60.289	54.545	23.99	13.25	42.89	4.02
388	405	2.288702	CCCACTGATCCTGATCGATCAC	60.289	54.545	23.99	14.56	42.89	3.06
411	428	2.769095	AGTGAGGGCTCTGAATTCCTAC	59.231	50.000	2.27	0.00	0.00	3.18
493	510	0.681243	GTTCCATTCCAGGTGAGCCC	60.681	60.000	0.00	0.00	34.57	5.19
494	511	0.681243	GGTTCCATTCCAGGTGAGCC	60.681	60.000	0.00	0.00	0.00	4.70
501	518	0.036765	TCGTTCGGGTTCCATTCCAG	60.037	55.000	0.00	0.00	0.00	3.86
531	548	0.249615	TGAGTGCTGTGCTGACTGAC	60.250	55.000	0.00	0.00	0.00	3.51
535	552	0.795085	GTGATGAGTGCTGTGCTGAC	59.205	55.000	0.00	0.00	0.00	3.51
544	561	7.495901	AGCTATATATATGGTGTGATGAGTGC	58.504	38.462	5.44	0.00	0.00	4.40
546	563	8.409371	CGAAGCTATATATATGGTGTGATGAGT	58.591	37.037	5.44	0.00	0.00	3.41
548	565	8.293699	ACGAAGCTATATATATGGTGTGATGA	57.706	34.615	5.44	0.00	0.00	2.92
549	566	8.932945	AACGAAGCTATATATATGGTGTGATG	57.067	34.615	5.44	0.00	0.00	3.07
550	567	7.915923	CGAACGAAGCTATATATATGGTGTGAT	59.084	37.037	5.44	0.00	0.00	3.06
562	584	7.905031	GTACTTGTTACGAACGAAGCTATAT	57.095	36.000	0.14	0.00	0.00	0.86
643	668	4.009675	TCAATCTGGTTGCGCTAGAAATT	58.990	39.130	9.73	0.00	38.23	1.82
808	834	3.043586	TCTTAATCGATCGAGCTTTCGC	58.956	45.455	23.84	0.00	35.39	4.70
809	835	5.621635	TTTCTTAATCGATCGAGCTTTCG	57.378	39.130	23.84	9.37	36.72	3.46
822	848	5.904080	CCAAGTGCGATCGATTTTCTTAATC	59.096	40.000	21.57	0.00	0.00	1.75
823	849	5.730568	GCCAAGTGCGATCGATTTTCTTAAT	60.731	40.000	21.57	0.00	0.00	1.40
824	850	4.436852	GCCAAGTGCGATCGATTTTCTTAA	60.437	41.667	21.57	0.00	0.00	1.85
825	851	3.063452	GCCAAGTGCGATCGATTTTCTTA	59.937	43.478	21.57	0.00	0.00	2.10
826	852	2.159517	GCCAAGTGCGATCGATTTTCTT	60.160	45.455	21.57	11.38	0.00	2.52
827	853	1.398390	GCCAAGTGCGATCGATTTTCT	59.602	47.619	21.57	5.76	0.00	2.52
828	854	1.130373	TGCCAAGTGCGATCGATTTTC	59.870	47.619	21.57	0.24	45.60	2.29
829	855	1.164411	TGCCAAGTGCGATCGATTTT	58.836	45.000	21.57	5.94	45.60	1.82
830	856	1.064505	CATGCCAAGTGCGATCGATTT	59.935	47.619	21.57	6.32	45.60	2.17
831	857	0.659427	CATGCCAAGTGCGATCGATT	59.341	50.000	21.57	7.08	45.60	3.34
832	858	1.779025	GCATGCCAAGTGCGATCGAT	61.779	55.000	21.57	0.00	45.60	3.59
833	859	2.463620	GCATGCCAAGTGCGATCGA	61.464	57.895	21.57	0.59	45.60	3.59
834	860	2.023741	GCATGCCAAGTGCGATCG	59.976	61.111	11.69	11.69	45.60	3.69
835	861	0.799534	GTTGCATGCCAAGTGCGATC	60.800	55.000	16.68	0.00	45.37	3.69
836	862	1.213537	GTTGCATGCCAAGTGCGAT	59.786	52.632	16.68	0.00	45.37	4.58
899	925	1.635817	ATGGGTCCGAATGGGTGAGG	61.636	60.000	0.00	0.00	37.00	3.86
941	972	4.319177	GAGACAAAGCTAGCAGAAGGAAA	58.681	43.478	18.83	0.00	0.00	3.13
950	990	4.048241	AGATAACCGAGACAAAGCTAGC	57.952	45.455	6.62	6.62	0.00	3.42
968	1008	2.419021	GCAGAGCAGAAGAGCAGAAGAT	60.419	50.000	0.00	0.00	36.85	2.40
976	1016	1.549620	TCCAAGAGCAGAGCAGAAGAG	59.450	52.381	0.00	0.00	0.00	2.85
1516	1584	1.306296	CCACCACGGGGAATTCCAT	59.694	57.895	25.67	8.02	37.91	3.41
1559	1637	3.629855	TGGTTCAGACGCAAATTTCTTCA	59.370	39.130	0.00	0.00	0.00	3.02
1596	1674	9.965824	ATCCAAAATTCCAAATACGTATTGATC	57.034	29.630	21.00	0.00	0.00	2.92
1608	1689	3.065655	CAGCGCAATCCAAAATTCCAAA	58.934	40.909	11.47	0.00	0.00	3.28
1609	1690	2.686235	CAGCGCAATCCAAAATTCCAA	58.314	42.857	11.47	0.00	0.00	3.53
1610	1691	1.672441	GCAGCGCAATCCAAAATTCCA	60.672	47.619	11.47	0.00	0.00	3.53
1611	1692	1.001624	GCAGCGCAATCCAAAATTCC	58.998	50.000	11.47	0.00	0.00	3.01
1612	1693	2.000429	AGCAGCGCAATCCAAAATTC	58.000	45.000	11.47	0.00	0.00	2.17
1613	1694	2.754552	TCTAGCAGCGCAATCCAAAATT	59.245	40.909	11.47	0.00	0.00	1.82
1614	1695	2.357009	CTCTAGCAGCGCAATCCAAAAT	59.643	45.455	11.47	0.00	0.00	1.82
1615	1696	1.739466	CTCTAGCAGCGCAATCCAAAA	59.261	47.619	11.47	0.00	0.00	2.44
1620	1701	1.857837	GACTTCTCTAGCAGCGCAATC	59.142	52.381	11.47	0.00	0.00	2.67
1625	1706	1.135660	TCGTTGACTTCTCTAGCAGCG	60.136	52.381	0.00	0.00	36.62	5.18
1632	1713	1.344763	CCAAGGGTCGTTGACTTCTCT	59.655	52.381	5.13	0.00	32.47	3.10
1719	1804	1.418637	ACCGCCAGAAGTCAAACCTTA	59.581	47.619	0.00	0.00	0.00	2.69
1772	1861	1.299976	CCGTGGAAAAGGGGGAGAG	59.700	63.158	0.00	0.00	0.00	3.20
1773	1862	3.490851	CCGTGGAAAAGGGGGAGA	58.509	61.111	0.00	0.00	0.00	3.71
1785	1874	0.179001	AAAACTGAACTCCCCCGTGG	60.179	55.000	0.00	0.00	0.00	4.94
1838	1928	6.202954	AGAGGTTTACAGCAATATTCATACGC	59.797	38.462	0.00	0.00	0.00	4.42
1850	1947	5.543714	TCGTAATTCAAGAGGTTTACAGCA	58.456	37.500	0.00	0.00	0.00	4.41
2003	2100	3.332034	ACTGCGCTTTTAATCTAACGGT	58.668	40.909	9.73	0.00	0.00	4.83
2045	2142	2.279650	ACGACACGAACAACCGGG	60.280	61.111	6.32	0.00	39.19	5.73
2050	2147	0.303191	TCGTACGACGACACGAACAA	59.697	50.000	15.28	4.94	46.73	2.83
2156	2255	2.151202	GGCATCGGACAGAGAAACAAA	58.849	47.619	0.00	0.00	0.00	2.83
2203	2302	3.134623	TGCTGAAGACAAGAAACAGAGGA	59.865	43.478	0.00	0.00	0.00	3.71
2234	2334	8.336801	TGGAAAAGTATCTCTTAGGAAAAAGC	57.663	34.615	0.00	0.00	35.02	3.51
2251	2351	7.932335	TGTATACGTTCAAACAATGGAAAAGT	58.068	30.769	0.00	0.00	0.00	2.66
2464	2569	2.095853	CGCTTGGAATTACTTGTCGCAT	59.904	45.455	0.00	0.00	0.00	4.73
2481	2586	1.284198	TGTCTAGTACTCCCTCCGCTT	59.716	52.381	0.00	0.00	0.00	4.68
2521	2626	1.450025	GACCCCAGTTTCAATCGGAC	58.550	55.000	0.00	0.00	0.00	4.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.