Multiple sequence alignment - TraesCS4B01G203200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G203200 chr4B 100.000 3732 0 0 1 3732 434473633 434469902 0.000000e+00 6892.0
1 TraesCS4B01G203200 chr4A 95.274 1862 63 12 1885 3729 113851548 113853401 0.000000e+00 2928.0
2 TraesCS4B01G203200 chr4A 92.943 836 48 5 805 1629 113850616 113851451 0.000000e+00 1206.0
3 TraesCS4B01G203200 chr4A 88.106 454 35 9 2905 3348 120453618 120453174 4.270000e-144 521.0
4 TraesCS4B01G203200 chr4A 96.992 133 4 0 3369 3501 120413656 120413524 1.350000e-54 224.0
5 TraesCS4B01G203200 chr4A 90.441 136 10 2 687 822 113850453 113850585 3.830000e-40 176.0
6 TraesCS4B01G203200 chr4A 87.273 110 8 5 1614 1720 685944699 685944593 1.820000e-23 121.0
7 TraesCS4B01G203200 chr4A 93.548 62 4 0 3511 3572 120389676 120389615 3.970000e-15 93.5
8 TraesCS4B01G203200 chr4D 94.557 1378 53 11 1888 3253 351469034 351467667 0.000000e+00 2109.0
9 TraesCS4B01G203200 chr4D 89.222 835 41 15 798 1630 351470072 351469285 0.000000e+00 998.0
10 TraesCS4B01G203200 chr4D 81.492 697 123 5 1 694 28750239 28750932 5.410000e-158 568.0
11 TraesCS4B01G203200 chr4D 92.703 370 7 3 3369 3731 351467647 351467291 1.990000e-142 516.0
12 TraesCS4B01G203200 chr4D 93.421 76 4 1 1713 1787 351469295 351469220 1.100000e-20 111.0
13 TraesCS4B01G203200 chr4D 89.888 89 5 2 738 822 351470192 351470104 1.100000e-20 111.0
14 TraesCS4B01G203200 chr6B 95.533 694 30 1 1 694 135398310 135399002 0.000000e+00 1109.0
15 TraesCS4B01G203200 chr2A 91.026 702 57 2 1 697 713022674 713023374 0.000000e+00 942.0
16 TraesCS4B01G203200 chr6A 90.593 691 63 2 4 694 36077625 36076937 0.000000e+00 915.0
17 TraesCS4B01G203200 chr6A 95.000 40 2 0 3325 3364 237755309 237755270 3.110000e-06 63.9
18 TraesCS4B01G203200 chr6A 95.000 40 2 0 3325 3364 237756338 237756299 3.110000e-06 63.9
19 TraesCS4B01G203200 chr6A 95.000 40 2 0 3325 3364 237757364 237757325 3.110000e-06 63.9
20 TraesCS4B01G203200 chr7D 84.075 697 105 6 1 695 246372756 246373448 0.000000e+00 667.0
21 TraesCS4B01G203200 chr7D 85.772 492 61 6 4 489 581137149 581136661 2.570000e-141 512.0
22 TraesCS4B01G203200 chr7D 92.857 84 4 1 1627 1708 5281912 5281995 1.820000e-23 121.0
23 TraesCS4B01G203200 chr7A 93.095 391 27 0 306 696 430271494 430271884 1.160000e-159 573.0
24 TraesCS4B01G203200 chr1A 93.734 383 23 1 312 694 535239559 535239940 1.160000e-159 573.0
25 TraesCS4B01G203200 chr1A 89.011 91 8 2 1619 1708 432840457 432840546 1.100000e-20 111.0
26 TraesCS4B01G203200 chr2B 91.089 404 34 2 291 694 120563420 120563019 2.530000e-151 545.0
27 TraesCS4B01G203200 chr2B 88.739 222 25 0 4 225 120563923 120563702 4.750000e-69 272.0
28 TraesCS4B01G203200 chr5D 92.045 88 5 1 1623 1708 325894297 325894384 5.060000e-24 122.0
29 TraesCS4B01G203200 chr5D 92.771 83 4 1 1628 1708 561630084 561630002 6.550000e-23 119.0
30 TraesCS4B01G203200 chr2D 90.217 92 6 3 1619 1708 544850058 544849968 2.360000e-22 117.0
31 TraesCS4B01G203200 chr1B 92.771 83 3 2 1620 1700 250351081 250351162 2.360000e-22 117.0
32 TraesCS4B01G203200 chr7B 88.298 94 9 1 1617 1708 476201115 476201208 1.100000e-20 111.0
33 TraesCS4B01G203200 chr7B 87.755 98 5 4 1631 1725 716043255 716043162 1.420000e-19 108.0
34 TraesCS4B01G203200 chr3D 95.122 41 2 0 3325 3365 373324972 373325012 8.650000e-07 65.8
35 TraesCS4B01G203200 chr3D 93.023 43 2 1 3318 3359 261571948 261571990 1.120000e-05 62.1
36 TraesCS4B01G203200 chr3B 95.000 40 2 0 3325 3364 487045480 487045519 3.110000e-06 63.9
37 TraesCS4B01G203200 chr1D 94.872 39 2 0 3326 3364 201495069 201495031 1.120000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G203200 chr4B 434469902 434473633 3731 True 6892.000000 6892 100.0000 1 3732 1 chr4B.!!$R1 3731
1 TraesCS4B01G203200 chr4A 113850453 113853401 2948 False 1436.666667 2928 92.8860 687 3729 3 chr4A.!!$F1 3042
2 TraesCS4B01G203200 chr4D 351467291 351470192 2901 True 769.000000 2109 91.9582 738 3731 5 chr4D.!!$R1 2993
3 TraesCS4B01G203200 chr4D 28750239 28750932 693 False 568.000000 568 81.4920 1 694 1 chr4D.!!$F1 693
4 TraesCS4B01G203200 chr6B 135398310 135399002 692 False 1109.000000 1109 95.5330 1 694 1 chr6B.!!$F1 693
5 TraesCS4B01G203200 chr2A 713022674 713023374 700 False 942.000000 942 91.0260 1 697 1 chr2A.!!$F1 696
6 TraesCS4B01G203200 chr6A 36076937 36077625 688 True 915.000000 915 90.5930 4 694 1 chr6A.!!$R1 690
7 TraesCS4B01G203200 chr7D 246372756 246373448 692 False 667.000000 667 84.0750 1 695 1 chr7D.!!$F2 694
8 TraesCS4B01G203200 chr2B 120563019 120563923 904 True 408.500000 545 89.9140 4 694 2 chr2B.!!$R1 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 605 0.458669 ACTTGACACGGACGTTCAGT 59.541 50.0 0.0 0.0 0.0 3.41 F
1387 1675 0.456653 GTGCGGGCTTAAATGTGCAG 60.457 55.0 0.0 0.0 32.3 4.41 F
1709 2001 1.119574 ATTATGGGACGGACGGAGGG 61.120 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 1989 0.179000 TACTACTCCCTCCGTCCGTC 59.821 60.0 0.00 0.0 0.0 4.79 R
2641 3084 0.246360 CTAGGTGGTCATCGTGTGCA 59.754 55.0 0.00 0.0 0.0 4.57 R
3585 4046 0.109132 GGCTTGCCATTTCACCTTCG 60.109 55.0 6.79 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 2.253603 GCAAGGAATGAAACATGCGAC 58.746 47.619 0.00 0.00 0.00 5.19
171 172 1.871676 GAAACAAGGAGACCGGACAAC 59.128 52.381 9.46 0.00 0.00 3.32
211 212 1.616725 GGTGGATCAAGGTGAATGCCA 60.617 52.381 0.00 0.00 0.00 4.92
215 216 2.083774 GATCAAGGTGAATGCCAACGA 58.916 47.619 0.00 0.00 37.61 3.85
252 258 4.077180 GACCGGGGAGGAGGAGGT 62.077 72.222 6.32 0.00 45.00 3.85
388 605 0.458669 ACTTGACACGGACGTTCAGT 59.541 50.000 0.00 0.00 0.00 3.41
415 633 2.111384 ACGTGGAGCTGGATAATCAGT 58.889 47.619 0.00 0.00 37.12 3.41
442 660 6.350445 GGTGGTGACAATGCTAAATGAAGAAT 60.350 38.462 0.00 0.00 46.06 2.40
453 671 6.721208 TGCTAAATGAAGAATGAAGGAACCTT 59.279 34.615 5.74 5.74 39.23 3.50
530 748 2.972713 AGTTCAGAGTTAGCTGGGTTCA 59.027 45.455 0.00 0.00 36.55 3.18
645 863 4.406648 TCATGTTGTAGCGGATGAGATT 57.593 40.909 0.00 0.00 0.00 2.40
722 942 8.931568 GTACTACCCCTTATATTTGGAGAAGAA 58.068 37.037 0.00 0.00 0.00 2.52
732 952 7.707624 ATATTTGGAGAAGAACTTGCAATGA 57.292 32.000 0.00 0.00 0.00 2.57
857 1136 1.563879 TCCACCCGATCAAACCATCAT 59.436 47.619 0.00 0.00 0.00 2.45
862 1141 2.483714 CCCGATCAAACCATCATCTCGT 60.484 50.000 0.00 0.00 0.00 4.18
866 1145 3.150848 TCAAACCATCATCTCGTCGAG 57.849 47.619 16.33 16.33 0.00 4.04
868 1147 2.853731 AACCATCATCTCGTCGAGTC 57.146 50.000 21.15 0.00 0.00 3.36
872 1151 2.217750 CATCATCTCGTCGAGTCCTCT 58.782 52.381 21.15 2.26 0.00 3.69
878 1157 1.378778 CGTCGAGTCCTCTTCCCCT 60.379 63.158 0.00 0.00 0.00 4.79
944 1223 1.066587 CATCGCCTTCCTCCTCGTC 59.933 63.158 0.00 0.00 0.00 4.20
1122 1402 1.139853 GACTCCATCAAGCCCTTCGAT 59.860 52.381 0.00 0.00 0.00 3.59
1242 1522 3.260884 AGAAGAAGGACATCAAGCGGTAA 59.739 43.478 0.00 0.00 0.00 2.85
1285 1573 3.243401 GGTCCTGATTCGTTTTTGCTTGT 60.243 43.478 0.00 0.00 0.00 3.16
1331 1619 5.240121 CAGGGAATTTGCATTTTGTTAGCT 58.760 37.500 0.00 0.00 0.00 3.32
1367 1655 1.667724 GTATGTTTGCGCTCAGATGCT 59.332 47.619 9.73 0.00 0.00 3.79
1387 1675 0.456653 GTGCGGGCTTAAATGTGCAG 60.457 55.000 0.00 0.00 32.30 4.41
1438 1726 2.290896 TGGATAGGGCTTGTTGGACTTG 60.291 50.000 0.00 0.00 0.00 3.16
1445 1733 2.480845 GCTTGTTGGACTTGTCGTAGT 58.519 47.619 0.00 0.00 0.00 2.73
1446 1734 3.553508 GGCTTGTTGGACTTGTCGTAGTA 60.554 47.826 0.00 0.00 0.00 1.82
1485 1774 7.178628 TGGTACTATGAGAACTCTTTTAGCACT 59.821 37.037 3.51 0.00 0.00 4.40
1506 1795 3.851098 TGTGTTTTAGTTTTGTGGCACC 58.149 40.909 16.26 0.00 0.00 5.01
1543 1834 4.507756 CGAAAGAATATGAGGCGACAATCA 59.492 41.667 0.00 0.00 0.00 2.57
1559 1850 3.701040 ACAATCAAAATTCGATCCTGGGG 59.299 43.478 0.00 0.00 0.00 4.96
1610 1902 2.006888 CGGTGGTGTTATGTTGCTAGG 58.993 52.381 0.00 0.00 0.00 3.02
1619 1911 7.125204 TGGTGTTATGTTGCTAGGACTAGTTAT 59.875 37.037 0.00 0.00 35.65 1.89
1634 1926 9.857345 AGGACTAGTTATAGTATAGTACTCCCT 57.143 37.037 0.00 0.00 42.46 4.20
1637 1929 8.757877 ACTAGTTATAGTATAGTACTCCCTCCG 58.242 40.741 0.00 0.00 40.57 4.63
1638 1930 7.566658 AGTTATAGTATAGTACTCCCTCCGT 57.433 40.000 0.00 0.00 40.14 4.69
1639 1931 7.619965 AGTTATAGTATAGTACTCCCTCCGTC 58.380 42.308 0.00 0.00 40.14 4.79
1640 1932 3.786368 AGTATAGTACTCCCTCCGTCC 57.214 52.381 0.00 0.00 32.47 4.79
1641 1933 2.374839 AGTATAGTACTCCCTCCGTCCC 59.625 54.545 0.00 0.00 32.47 4.46
1642 1934 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
1643 1935 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
1644 1936 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1645 1937 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1646 1938 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1647 1939 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
1648 1940 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1649 1941 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1650 1942 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1651 1943 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1652 1944 5.019657 TCCCTCCGTCCCATAATATAAGT 57.980 43.478 0.00 0.00 0.00 2.24
1653 1945 4.775780 TCCCTCCGTCCCATAATATAAGTG 59.224 45.833 0.00 0.00 0.00 3.16
1654 1946 4.530946 CCCTCCGTCCCATAATATAAGTGT 59.469 45.833 0.00 0.00 0.00 3.55
1655 1947 5.012768 CCCTCCGTCCCATAATATAAGTGTT 59.987 44.000 0.00 0.00 0.00 3.32
1656 1948 6.465321 CCCTCCGTCCCATAATATAAGTGTTT 60.465 42.308 0.00 0.00 0.00 2.83
1657 1949 6.996282 CCTCCGTCCCATAATATAAGTGTTTT 59.004 38.462 0.00 0.00 0.00 2.43
1658 1950 7.501225 CCTCCGTCCCATAATATAAGTGTTTTT 59.499 37.037 0.00 0.00 0.00 1.94
1686 1978 9.507329 ACACTAGTGTAATGTCAAAAATGATCT 57.493 29.630 26.91 0.00 42.90 2.75
1703 1995 9.449719 AAAATGATCTTATATTATGGGACGGAC 57.550 33.333 0.00 0.00 0.00 4.79
1704 1996 6.203808 TGATCTTATATTATGGGACGGACG 57.796 41.667 0.00 0.00 0.00 4.79
1705 1997 5.126545 TGATCTTATATTATGGGACGGACGG 59.873 44.000 0.00 0.00 0.00 4.79
1706 1998 4.665451 TCTTATATTATGGGACGGACGGA 58.335 43.478 0.00 0.00 0.00 4.69
1707 1999 4.703575 TCTTATATTATGGGACGGACGGAG 59.296 45.833 0.00 0.00 0.00 4.63
1708 2000 1.624336 TATTATGGGACGGACGGAGG 58.376 55.000 0.00 0.00 0.00 4.30
1709 2001 1.119574 ATTATGGGACGGACGGAGGG 61.120 60.000 0.00 0.00 0.00 4.30
1710 2002 2.227494 TTATGGGACGGACGGAGGGA 62.227 60.000 0.00 0.00 0.00 4.20
1711 2003 2.635787 TATGGGACGGACGGAGGGAG 62.636 65.000 0.00 0.00 0.00 4.30
1722 2014 4.405548 GGACGGAGGGAGTAGTATTGTAT 58.594 47.826 0.00 0.00 0.00 2.29
1802 2241 5.697082 AGTATATACTAGGACGGAGGGAG 57.303 47.826 13.88 0.00 34.13 4.30
1803 2242 5.100094 AGTATATACTAGGACGGAGGGAGT 58.900 45.833 13.88 0.00 34.13 3.85
1810 2249 2.732763 AGGACGGAGGGAGTAGTAAAC 58.267 52.381 0.00 0.00 0.00 2.01
1838 2277 8.993424 AGTACAGTTTTGGTATCCATAAGATCT 58.007 33.333 0.00 0.00 36.33 2.75
1839 2278 9.614792 GTACAGTTTTGGTATCCATAAGATCTT 57.385 33.333 13.56 13.56 36.33 2.40
1841 2280 7.067494 ACAGTTTTGGTATCCATAAGATCTTGC 59.933 37.037 18.47 0.00 36.33 4.01
1842 2281 7.284034 CAGTTTTGGTATCCATAAGATCTTGCT 59.716 37.037 18.47 2.39 36.33 3.91
1843 2282 7.836183 AGTTTTGGTATCCATAAGATCTTGCTT 59.164 33.333 18.47 0.00 36.33 3.91
1844 2283 7.807977 TTTGGTATCCATAAGATCTTGCTTC 57.192 36.000 18.47 2.45 36.33 3.86
1845 2284 6.499106 TGGTATCCATAAGATCTTGCTTCA 57.501 37.500 18.47 0.00 36.33 3.02
1846 2285 7.083062 TGGTATCCATAAGATCTTGCTTCAT 57.917 36.000 18.47 0.00 36.33 2.57
1847 2286 7.164122 TGGTATCCATAAGATCTTGCTTCATC 58.836 38.462 18.47 4.21 36.33 2.92
1848 2287 7.164122 GGTATCCATAAGATCTTGCTTCATCA 58.836 38.462 18.47 0.00 36.33 3.07
1849 2288 7.828223 GGTATCCATAAGATCTTGCTTCATCAT 59.172 37.037 18.47 0.00 36.33 2.45
1850 2289 9.228949 GTATCCATAAGATCTTGCTTCATCATT 57.771 33.333 18.47 0.00 36.33 2.57
1851 2290 7.506328 TCCATAAGATCTTGCTTCATCATTG 57.494 36.000 18.47 0.00 0.00 2.82
1852 2291 6.489022 TCCATAAGATCTTGCTTCATCATTGG 59.511 38.462 18.47 8.69 0.00 3.16
1853 2292 6.489022 CCATAAGATCTTGCTTCATCATTGGA 59.511 38.462 18.47 0.00 0.00 3.53
1854 2293 7.176865 CCATAAGATCTTGCTTCATCATTGGAT 59.823 37.037 18.47 0.00 0.00 3.41
1855 2294 6.636562 AAGATCTTGCTTCATCATTGGATC 57.363 37.500 7.30 0.00 0.00 3.36
1856 2295 5.942961 AGATCTTGCTTCATCATTGGATCT 58.057 37.500 0.00 0.00 35.37 2.75
1857 2296 6.366340 AGATCTTGCTTCATCATTGGATCTT 58.634 36.000 0.00 0.00 36.34 2.40
1858 2297 5.830000 TCTTGCTTCATCATTGGATCTTG 57.170 39.130 0.00 0.00 0.00 3.02
1859 2298 5.258841 TCTTGCTTCATCATTGGATCTTGT 58.741 37.500 0.00 0.00 0.00 3.16
1860 2299 5.713389 TCTTGCTTCATCATTGGATCTTGTT 59.287 36.000 0.00 0.00 0.00 2.83
1861 2300 5.988310 TGCTTCATCATTGGATCTTGTTT 57.012 34.783 0.00 0.00 0.00 2.83
1862 2301 5.957798 TGCTTCATCATTGGATCTTGTTTC 58.042 37.500 0.00 0.00 0.00 2.78
1863 2302 5.477637 TGCTTCATCATTGGATCTTGTTTCA 59.522 36.000 0.00 0.00 0.00 2.69
1864 2303 6.153851 TGCTTCATCATTGGATCTTGTTTCAT 59.846 34.615 0.00 0.00 0.00 2.57
1865 2304 6.696148 GCTTCATCATTGGATCTTGTTTCATC 59.304 38.462 0.00 0.00 0.00 2.92
1866 2305 7.629866 GCTTCATCATTGGATCTTGTTTCATCA 60.630 37.037 0.00 0.00 0.00 3.07
1867 2306 7.891498 TCATCATTGGATCTTGTTTCATCAT 57.109 32.000 0.00 0.00 0.00 2.45
1868 2307 8.301252 TCATCATTGGATCTTGTTTCATCATT 57.699 30.769 0.00 0.00 0.00 2.57
1869 2308 8.194769 TCATCATTGGATCTTGTTTCATCATTG 58.805 33.333 0.00 0.00 0.00 2.82
1870 2309 6.869695 TCATTGGATCTTGTTTCATCATTGG 58.130 36.000 0.00 0.00 0.00 3.16
1871 2310 6.664384 TCATTGGATCTTGTTTCATCATTGGA 59.336 34.615 0.00 0.00 0.00 3.53
1872 2311 7.343574 TCATTGGATCTTGTTTCATCATTGGAT 59.656 33.333 0.00 0.00 0.00 3.41
1873 2312 6.704289 TGGATCTTGTTTCATCATTGGATC 57.296 37.500 0.00 0.00 0.00 3.36
1874 2313 6.429151 TGGATCTTGTTTCATCATTGGATCT 58.571 36.000 0.00 0.00 31.90 2.75
1875 2314 6.893554 TGGATCTTGTTTCATCATTGGATCTT 59.106 34.615 0.00 0.00 31.90 2.40
1876 2315 7.147966 TGGATCTTGTTTCATCATTGGATCTTG 60.148 37.037 0.00 0.00 31.90 3.02
1877 2316 5.957798 TCTTGTTTCATCATTGGATCTTGC 58.042 37.500 0.00 0.00 0.00 4.01
1878 2317 5.713389 TCTTGTTTCATCATTGGATCTTGCT 59.287 36.000 0.00 0.00 0.00 3.91
1879 2318 5.988310 TGTTTCATCATTGGATCTTGCTT 57.012 34.783 0.00 0.00 0.00 3.91
1880 2319 5.957798 TGTTTCATCATTGGATCTTGCTTC 58.042 37.500 0.00 0.00 0.00 3.86
1881 2320 5.477637 TGTTTCATCATTGGATCTTGCTTCA 59.522 36.000 0.00 0.00 0.00 3.02
1882 2321 6.153851 TGTTTCATCATTGGATCTTGCTTCAT 59.846 34.615 0.00 0.00 0.00 2.57
1883 2322 6.387041 TTCATCATTGGATCTTGCTTCATC 57.613 37.500 0.00 0.00 0.00 2.92
1908 2347 1.487300 TCCCCATGCCATTTGTCATG 58.513 50.000 0.00 0.00 39.67 3.07
1917 2356 5.471556 TGCCATTTGTCATGAACATTTCT 57.528 34.783 0.00 0.00 37.82 2.52
1925 2364 5.231702 TGTCATGAACATTTCTGCAATTGG 58.768 37.500 7.72 0.00 31.20 3.16
1960 2399 7.913674 AGTTTGAATCTATGTTCCTGTTCTC 57.086 36.000 0.00 0.00 0.00 2.87
1998 2437 4.782019 TGCTGTAATTGCCCTTAAGTTG 57.218 40.909 0.97 0.00 0.00 3.16
2023 2466 6.756542 GTCTGCTTGTTCAACCAAATAAAAGT 59.243 34.615 0.00 0.00 0.00 2.66
2137 2580 1.408702 GTGCTGCAAAAGTCCAAGGAA 59.591 47.619 2.77 0.00 0.00 3.36
2251 2694 3.574826 ACAGTGTGAAGACTACCTCCTTC 59.425 47.826 0.00 0.00 39.26 3.46
2641 3084 1.765597 AAGGAGGAACGGGTTTCGCT 61.766 55.000 0.00 0.00 43.89 4.93
2698 3141 2.026262 GCATTTAGGGAGTGGTTCTGGA 60.026 50.000 0.00 0.00 0.00 3.86
2771 3214 6.147821 ACTGTTGTTGTATAATGCTGTCAGTC 59.852 38.462 0.93 0.00 0.00 3.51
3015 3469 3.624861 AGAGCAGATATTCGTTTGCCTTG 59.375 43.478 0.00 0.00 37.26 3.61
3016 3470 3.347216 AGCAGATATTCGTTTGCCTTGT 58.653 40.909 0.00 0.00 37.26 3.16
3017 3471 4.513442 AGCAGATATTCGTTTGCCTTGTA 58.487 39.130 0.00 0.00 37.26 2.41
3195 3649 4.142730 GCAAATTCTGTGGTGAGATGACTC 60.143 45.833 0.00 0.00 42.88 3.36
3216 3670 6.222389 ACTCTTGCATCTCTACAGATTATGC 58.778 40.000 14.98 14.98 37.25 3.14
3266 3720 1.440145 GGAGAATGCGTTAGGCCTGC 61.440 60.000 17.99 11.60 42.61 4.85
3269 3723 1.076777 AATGCGTTAGGCCTGCCAT 60.077 52.632 17.99 9.39 42.61 4.40
3270 3724 1.386525 AATGCGTTAGGCCTGCCATG 61.387 55.000 17.99 5.87 42.61 3.66
3277 3731 2.370189 GTTAGGCCTGCCATGTATCTCT 59.630 50.000 17.99 0.00 38.92 3.10
3297 3751 6.361433 TCTCTACAAAATCACCACAGGAAAA 58.639 36.000 0.00 0.00 0.00 2.29
3309 3763 4.041075 ACCACAGGAAAACAAACCAAAACT 59.959 37.500 0.00 0.00 0.00 2.66
3364 3818 9.781834 CCAAAATATAAGACGATTTTGCTGTTA 57.218 29.630 12.44 0.00 45.44 2.41
3371 3825 6.351327 AGACGATTTTGCTGTTATTCTAGC 57.649 37.500 0.00 0.00 40.29 3.42
3398 3852 2.626743 CCATCAGAAGGGAATGAATGGC 59.373 50.000 0.00 0.00 0.00 4.40
3585 4046 0.678950 GCTAGGATCAGAGCTCCACC 59.321 60.000 10.93 8.91 35.73 4.61
3681 4146 4.826274 TCTCTTGATTTCGTTCCTGGAT 57.174 40.909 0.00 0.00 0.00 3.41
3686 4151 6.707290 TCTTGATTTCGTTCCTGGATTTAGA 58.293 36.000 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.624410 GCCATATAGCGCATGAATCATCA 59.376 43.478 11.47 0.00 40.57 3.07
18 19 0.110295 TTGCGCACCATAGGCCATAT 59.890 50.000 11.12 0.00 0.00 1.78
54 55 1.369625 CGTCCTGGATTCTTTTCCCG 58.630 55.000 0.00 0.00 34.67 5.14
211 212 2.436646 CCTCGCCATGGCTTCGTT 60.437 61.111 33.07 0.00 39.32 3.85
243 249 0.790993 TAAGGACCACACCTCCTCCT 59.209 55.000 0.00 0.00 37.13 3.69
388 605 2.031012 CAGCTCCACGTGAAGGCA 59.969 61.111 19.30 0.00 0.00 4.75
415 633 5.172687 TCATTTAGCATTGTCACCACCTA 57.827 39.130 0.00 0.00 0.00 3.08
627 845 3.179443 GGAATCTCATCCGCTACAACA 57.821 47.619 0.00 0.00 0.00 3.33
697 917 8.931568 GTTCTTCTCCAAATATAAGGGGTAGTA 58.068 37.037 1.47 0.00 0.00 1.82
698 918 7.628101 AGTTCTTCTCCAAATATAAGGGGTAGT 59.372 37.037 1.47 0.00 0.00 2.73
699 919 8.035448 AGTTCTTCTCCAAATATAAGGGGTAG 57.965 38.462 0.00 0.00 0.00 3.18
700 920 8.272173 CAAGTTCTTCTCCAAATATAAGGGGTA 58.728 37.037 0.00 0.00 0.00 3.69
701 921 6.910259 AGTTCTTCTCCAAATATAAGGGGT 57.090 37.500 0.00 0.00 0.00 4.95
702 922 6.039829 GCAAGTTCTTCTCCAAATATAAGGGG 59.960 42.308 0.00 0.00 0.00 4.79
716 936 6.319658 TCAGACTTTTCATTGCAAGTTCTTCT 59.680 34.615 4.94 0.00 33.22 2.85
722 942 6.212888 AGTTTCAGACTTTTCATTGCAAGT 57.787 33.333 4.94 0.00 33.92 3.16
732 952 1.597663 CGGTGCGAGTTTCAGACTTTT 59.402 47.619 0.00 0.00 39.19 2.27
786 1006 1.729838 GTGCGAGTCTGTCACGGTC 60.730 63.158 0.00 0.00 0.00 4.79
790 1010 1.132588 GACTTGTGCGAGTCTGTCAC 58.867 55.000 11.32 0.00 42.18 3.67
794 1018 0.668706 CTGGGACTTGTGCGAGTCTG 60.669 60.000 16.50 6.50 44.32 3.51
857 1136 0.392729 GGGAAGAGGACTCGACGAGA 60.393 60.000 30.56 0.00 33.32 4.04
862 1141 0.408309 TGAAGGGGAAGAGGACTCGA 59.592 55.000 0.00 0.00 34.09 4.04
866 1145 4.141597 CCTAGATTTGAAGGGGAAGAGGAC 60.142 50.000 0.00 0.00 0.00 3.85
868 1147 4.429854 CCTAGATTTGAAGGGGAAGAGG 57.570 50.000 0.00 0.00 0.00 3.69
878 1157 5.046878 TCGAAGTGCTAACCCTAGATTTGAA 60.047 40.000 0.00 0.00 0.00 2.69
1274 1561 4.507756 GTCCTTGGATGAACAAGCAAAAAC 59.492 41.667 0.00 0.00 44.98 2.43
1331 1619 7.319646 GCAAACATACCAATTTCACAATCCTA 58.680 34.615 0.00 0.00 0.00 2.94
1367 1655 1.175347 TGCACATTTAAGCCCGCACA 61.175 50.000 0.00 0.00 0.00 4.57
1438 1726 4.035208 CCAAGGAAAATGGCATACTACGAC 59.965 45.833 0.00 0.00 0.00 4.34
1445 1733 6.905736 TCATAGTACCAAGGAAAATGGCATA 58.094 36.000 0.00 0.00 41.89 3.14
1446 1734 5.765510 TCATAGTACCAAGGAAAATGGCAT 58.234 37.500 0.00 0.00 41.89 4.40
1485 1774 3.673594 CGGTGCCACAAAACTAAAACACA 60.674 43.478 0.00 0.00 0.00 3.72
1520 1809 4.507756 TGATTGTCGCCTCATATTCTTTCG 59.492 41.667 0.00 0.00 0.00 3.46
1529 1820 3.689161 TCGAATTTTGATTGTCGCCTCAT 59.311 39.130 0.00 0.00 33.58 2.90
1543 1834 1.341976 CCCACCCCAGGATCGAATTTT 60.342 52.381 0.00 0.00 0.00 1.82
1559 1850 2.577700 TGTACCATGACAAACACCCAC 58.422 47.619 0.00 0.00 0.00 4.61
1580 1872 2.060050 AACACCACCGATCCAAACAA 57.940 45.000 0.00 0.00 0.00 2.83
1619 1911 3.584848 GGGACGGAGGGAGTACTATACTA 59.415 52.174 0.00 0.00 39.59 1.82
1629 1921 5.024118 ACTTATATTATGGGACGGAGGGAG 58.976 45.833 0.00 0.00 0.00 4.30
1630 1922 4.775780 CACTTATATTATGGGACGGAGGGA 59.224 45.833 0.00 0.00 0.00 4.20
1631 1923 4.530946 ACACTTATATTATGGGACGGAGGG 59.469 45.833 0.00 0.00 0.00 4.30
1632 1924 5.740290 ACACTTATATTATGGGACGGAGG 57.260 43.478 0.00 0.00 0.00 4.30
1633 1925 8.446599 AAAAACACTTATATTATGGGACGGAG 57.553 34.615 0.00 0.00 0.00 4.63
1660 1952 9.507329 AGATCATTTTTGACATTACACTAGTGT 57.493 29.630 30.13 30.13 46.87 3.55
1677 1969 9.449719 GTCCGTCCCATAATATAAGATCATTTT 57.550 33.333 0.00 0.00 0.00 1.82
1678 1970 7.764443 CGTCCGTCCCATAATATAAGATCATTT 59.236 37.037 0.00 0.00 0.00 2.32
1679 1971 7.265673 CGTCCGTCCCATAATATAAGATCATT 58.734 38.462 0.00 0.00 0.00 2.57
1680 1972 6.183360 CCGTCCGTCCCATAATATAAGATCAT 60.183 42.308 0.00 0.00 0.00 2.45
1681 1973 5.126545 CCGTCCGTCCCATAATATAAGATCA 59.873 44.000 0.00 0.00 0.00 2.92
1682 1974 5.359009 TCCGTCCGTCCCATAATATAAGATC 59.641 44.000 0.00 0.00 0.00 2.75
1683 1975 5.266788 TCCGTCCGTCCCATAATATAAGAT 58.733 41.667 0.00 0.00 0.00 2.40
1684 1976 4.665451 TCCGTCCGTCCCATAATATAAGA 58.335 43.478 0.00 0.00 0.00 2.10
1685 1977 4.142227 CCTCCGTCCGTCCCATAATATAAG 60.142 50.000 0.00 0.00 0.00 1.73
1686 1978 3.765511 CCTCCGTCCGTCCCATAATATAA 59.234 47.826 0.00 0.00 0.00 0.98
1687 1979 3.359033 CCTCCGTCCGTCCCATAATATA 58.641 50.000 0.00 0.00 0.00 0.86
1688 1980 2.176889 CCTCCGTCCGTCCCATAATAT 58.823 52.381 0.00 0.00 0.00 1.28
1689 1981 1.624336 CCTCCGTCCGTCCCATAATA 58.376 55.000 0.00 0.00 0.00 0.98
1690 1982 1.119574 CCCTCCGTCCGTCCCATAAT 61.120 60.000 0.00 0.00 0.00 1.28
1691 1983 1.759299 CCCTCCGTCCGTCCCATAA 60.759 63.158 0.00 0.00 0.00 1.90
1692 1984 2.123597 CCCTCCGTCCGTCCCATA 60.124 66.667 0.00 0.00 0.00 2.74
1693 1985 4.070265 TCCCTCCGTCCGTCCCAT 62.070 66.667 0.00 0.00 0.00 4.00
1694 1986 4.753662 CTCCCTCCGTCCGTCCCA 62.754 72.222 0.00 0.00 0.00 4.37
1695 1987 3.350031 TACTCCCTCCGTCCGTCCC 62.350 68.421 0.00 0.00 0.00 4.46
1696 1988 1.823041 CTACTCCCTCCGTCCGTCC 60.823 68.421 0.00 0.00 0.00 4.79
1697 1989 0.179000 TACTACTCCCTCCGTCCGTC 59.821 60.000 0.00 0.00 0.00 4.79
1698 1990 0.842635 ATACTACTCCCTCCGTCCGT 59.157 55.000 0.00 0.00 0.00 4.69
1699 1991 1.607628 CAATACTACTCCCTCCGTCCG 59.392 57.143 0.00 0.00 0.00 4.79
1700 1992 2.664015 ACAATACTACTCCCTCCGTCC 58.336 52.381 0.00 0.00 0.00 4.79
1701 1993 5.068636 TCATACAATACTACTCCCTCCGTC 58.931 45.833 0.00 0.00 0.00 4.79
1702 1994 5.057843 TCATACAATACTACTCCCTCCGT 57.942 43.478 0.00 0.00 0.00 4.69
1703 1995 4.082679 GCTCATACAATACTACTCCCTCCG 60.083 50.000 0.00 0.00 0.00 4.63
1704 1996 5.081032 AGCTCATACAATACTACTCCCTCC 58.919 45.833 0.00 0.00 0.00 4.30
1705 1997 6.658188 AAGCTCATACAATACTACTCCCTC 57.342 41.667 0.00 0.00 0.00 4.30
1706 1998 7.397761 GGATAAGCTCATACAATACTACTCCCT 59.602 40.741 0.00 0.00 0.00 4.20
1707 1999 7.363968 GGGATAAGCTCATACAATACTACTCCC 60.364 44.444 0.00 0.00 0.00 4.30
1708 2000 7.397761 AGGGATAAGCTCATACAATACTACTCC 59.602 40.741 0.00 0.00 0.00 3.85
1709 2001 8.247562 CAGGGATAAGCTCATACAATACTACTC 58.752 40.741 0.00 0.00 0.00 2.59
1710 2002 7.950684 TCAGGGATAAGCTCATACAATACTACT 59.049 37.037 0.00 0.00 0.00 2.57
1711 2003 8.123639 TCAGGGATAAGCTCATACAATACTAC 57.876 38.462 0.00 0.00 0.00 2.73
1722 2014 6.065976 TCTTGAAATTCAGGGATAAGCTCA 57.934 37.500 5.27 0.00 0.00 4.26
1787 2226 1.594129 ACTACTCCCTCCGTCCTAGT 58.406 55.000 0.00 0.00 0.00 2.57
1788 2227 3.853355 TTACTACTCCCTCCGTCCTAG 57.147 52.381 0.00 0.00 0.00 3.02
1789 2228 3.525199 AGTTTACTACTCCCTCCGTCCTA 59.475 47.826 0.00 0.00 28.23 2.94
1790 2229 2.311243 AGTTTACTACTCCCTCCGTCCT 59.689 50.000 0.00 0.00 28.23 3.85
1791 2230 2.732763 AGTTTACTACTCCCTCCGTCC 58.267 52.381 0.00 0.00 28.23 4.79
1792 2231 4.522114 ACTAGTTTACTACTCCCTCCGTC 58.478 47.826 0.00 0.00 38.33 4.79
1793 2232 4.582973 ACTAGTTTACTACTCCCTCCGT 57.417 45.455 0.00 0.00 38.33 4.69
1794 2233 5.431765 TGTACTAGTTTACTACTCCCTCCG 58.568 45.833 0.00 0.00 38.33 4.63
1795 2234 6.422333 ACTGTACTAGTTTACTACTCCCTCC 58.578 44.000 0.00 0.00 35.67 4.30
1822 2261 6.499106 TGAAGCAAGATCTTATGGATACCA 57.501 37.500 7.86 0.00 38.19 3.25
1836 2275 5.258841 ACAAGATCCAATGATGAAGCAAGA 58.741 37.500 0.00 0.00 0.00 3.02
1837 2276 5.578005 ACAAGATCCAATGATGAAGCAAG 57.422 39.130 0.00 0.00 0.00 4.01
1838 2277 5.988310 AACAAGATCCAATGATGAAGCAA 57.012 34.783 0.00 0.00 0.00 3.91
1839 2278 5.477637 TGAAACAAGATCCAATGATGAAGCA 59.522 36.000 0.00 0.00 0.00 3.91
1841 2280 7.768240 TGATGAAACAAGATCCAATGATGAAG 58.232 34.615 0.00 0.00 0.00 3.02
1842 2281 7.706100 TGATGAAACAAGATCCAATGATGAA 57.294 32.000 0.00 0.00 0.00 2.57
1843 2282 7.891498 ATGATGAAACAAGATCCAATGATGA 57.109 32.000 0.00 0.00 0.00 2.92
1844 2283 7.438160 CCAATGATGAAACAAGATCCAATGATG 59.562 37.037 0.00 0.00 0.00 3.07
1845 2284 7.343574 TCCAATGATGAAACAAGATCCAATGAT 59.656 33.333 0.00 0.00 0.00 2.45
1846 2285 6.664384 TCCAATGATGAAACAAGATCCAATGA 59.336 34.615 0.00 0.00 0.00 2.57
1847 2286 6.869695 TCCAATGATGAAACAAGATCCAATG 58.130 36.000 0.00 0.00 0.00 2.82
1848 2287 7.563924 AGATCCAATGATGAAACAAGATCCAAT 59.436 33.333 0.00 0.00 31.45 3.16
1849 2288 6.893554 AGATCCAATGATGAAACAAGATCCAA 59.106 34.615 0.00 0.00 31.45 3.53
1850 2289 6.429151 AGATCCAATGATGAAACAAGATCCA 58.571 36.000 0.00 0.00 31.45 3.41
1851 2290 6.956202 AGATCCAATGATGAAACAAGATCC 57.044 37.500 0.00 0.00 31.45 3.36
1852 2291 6.696148 GCAAGATCCAATGATGAAACAAGATC 59.304 38.462 0.00 0.00 0.00 2.75
1853 2292 6.380274 AGCAAGATCCAATGATGAAACAAGAT 59.620 34.615 0.00 0.00 0.00 2.40
1854 2293 5.713389 AGCAAGATCCAATGATGAAACAAGA 59.287 36.000 0.00 0.00 0.00 3.02
1855 2294 5.962433 AGCAAGATCCAATGATGAAACAAG 58.038 37.500 0.00 0.00 0.00 3.16
1856 2295 5.988310 AGCAAGATCCAATGATGAAACAA 57.012 34.783 0.00 0.00 0.00 2.83
1857 2296 5.477637 TGAAGCAAGATCCAATGATGAAACA 59.522 36.000 0.00 0.00 0.00 2.83
1858 2297 5.957798 TGAAGCAAGATCCAATGATGAAAC 58.042 37.500 0.00 0.00 0.00 2.78
1859 2298 6.378848 TGATGAAGCAAGATCCAATGATGAAA 59.621 34.615 0.00 0.00 0.00 2.69
1860 2299 5.889289 TGATGAAGCAAGATCCAATGATGAA 59.111 36.000 0.00 0.00 0.00 2.57
1861 2300 5.442391 TGATGAAGCAAGATCCAATGATGA 58.558 37.500 0.00 0.00 0.00 2.92
1862 2301 5.767816 TGATGAAGCAAGATCCAATGATG 57.232 39.130 0.00 0.00 0.00 3.07
1863 2302 7.232188 AGTATGATGAAGCAAGATCCAATGAT 58.768 34.615 0.00 0.00 0.00 2.45
1864 2303 6.598503 AGTATGATGAAGCAAGATCCAATGA 58.401 36.000 0.00 0.00 0.00 2.57
1865 2304 6.879276 AGTATGATGAAGCAAGATCCAATG 57.121 37.500 0.00 0.00 0.00 2.82
1866 2305 6.489361 GGAAGTATGATGAAGCAAGATCCAAT 59.511 38.462 0.00 0.00 0.00 3.16
1867 2306 5.824624 GGAAGTATGATGAAGCAAGATCCAA 59.175 40.000 0.00 0.00 0.00 3.53
1868 2307 5.371526 GGAAGTATGATGAAGCAAGATCCA 58.628 41.667 0.00 0.00 0.00 3.41
1869 2308 4.759183 GGGAAGTATGATGAAGCAAGATCC 59.241 45.833 0.00 0.00 0.00 3.36
1870 2309 4.759183 GGGGAAGTATGATGAAGCAAGATC 59.241 45.833 0.00 0.00 0.00 2.75
1871 2310 4.166725 TGGGGAAGTATGATGAAGCAAGAT 59.833 41.667 0.00 0.00 0.00 2.40
1872 2311 3.523157 TGGGGAAGTATGATGAAGCAAGA 59.477 43.478 0.00 0.00 0.00 3.02
1873 2312 3.889815 TGGGGAAGTATGATGAAGCAAG 58.110 45.455 0.00 0.00 0.00 4.01
1874 2313 4.209538 CATGGGGAAGTATGATGAAGCAA 58.790 43.478 0.00 0.00 0.00 3.91
1875 2314 3.824133 CATGGGGAAGTATGATGAAGCA 58.176 45.455 0.00 0.00 0.00 3.91
1876 2315 2.555757 GCATGGGGAAGTATGATGAAGC 59.444 50.000 0.00 0.00 0.00 3.86
1877 2316 3.152341 GGCATGGGGAAGTATGATGAAG 58.848 50.000 0.00 0.00 0.00 3.02
1878 2317 2.513317 TGGCATGGGGAAGTATGATGAA 59.487 45.455 0.00 0.00 0.00 2.57
1879 2318 2.134354 TGGCATGGGGAAGTATGATGA 58.866 47.619 0.00 0.00 0.00 2.92
1880 2319 2.662535 TGGCATGGGGAAGTATGATG 57.337 50.000 0.00 0.00 0.00 3.07
1881 2320 3.899360 CAAATGGCATGGGGAAGTATGAT 59.101 43.478 0.00 0.00 0.00 2.45
1882 2321 3.298619 CAAATGGCATGGGGAAGTATGA 58.701 45.455 0.00 0.00 0.00 2.15
1883 2322 3.033184 ACAAATGGCATGGGGAAGTATG 58.967 45.455 0.00 0.00 0.00 2.39
1908 2347 4.682860 CAGTGACCAATTGCAGAAATGTTC 59.317 41.667 0.00 0.00 0.00 3.18
1917 2356 4.085357 ACTACTTCAGTGACCAATTGCA 57.915 40.909 0.00 0.00 35.62 4.08
1925 2364 8.764524 ACATAGATTCAAACTACTTCAGTGAC 57.235 34.615 0.00 0.00 37.63 3.67
1981 2420 4.459337 AGCAGACAACTTAAGGGCAATTAC 59.541 41.667 7.53 0.00 0.00 1.89
1984 2423 3.160679 AGCAGACAACTTAAGGGCAAT 57.839 42.857 7.53 0.00 0.00 3.56
2023 2466 8.477419 AAGGAAAAACACTCAGAAATCCATAA 57.523 30.769 0.00 0.00 0.00 1.90
2074 2517 3.505293 CCTTCTCTTGCTTTTTCTGGGAG 59.495 47.826 0.00 0.00 0.00 4.30
2251 2694 1.227002 GCGTAGGGCTTCCTCTTCG 60.227 63.158 0.00 0.00 41.96 3.79
2430 2873 6.360370 TGTAGCTTTTCTCCACTGACTTAT 57.640 37.500 0.00 0.00 0.00 1.73
2641 3084 0.246360 CTAGGTGGTCATCGTGTGCA 59.754 55.000 0.00 0.00 0.00 4.57
2698 3141 1.065126 GCAGGCTTCACCAATCCTAGT 60.065 52.381 0.00 0.00 43.14 2.57
2832 3284 6.873997 AGTATCGTTTGTTCCAGATCATACA 58.126 36.000 0.00 0.00 0.00 2.29
2912 3365 1.269448 GTCAAGCGCCAAAGAAATCCA 59.731 47.619 2.29 0.00 0.00 3.41
3010 3464 3.199880 AGCATGATGGTACTACAAGGC 57.800 47.619 0.00 0.00 0.00 4.35
3015 3469 5.411361 TGTGAACAAAGCATGATGGTACTAC 59.589 40.000 0.00 0.00 0.00 2.73
3016 3470 5.555966 TGTGAACAAAGCATGATGGTACTA 58.444 37.500 0.00 0.00 0.00 1.82
3017 3471 4.397420 TGTGAACAAAGCATGATGGTACT 58.603 39.130 0.00 0.00 0.00 2.73
3087 3541 4.721776 ACTAGGGACTCTTTGGATTGCATA 59.278 41.667 0.00 0.00 41.75 3.14
3088 3542 3.525199 ACTAGGGACTCTTTGGATTGCAT 59.475 43.478 0.00 0.00 41.75 3.96
3195 3649 5.549347 AGGCATAATCTGTAGAGATGCAAG 58.451 41.667 22.58 2.98 43.54 4.01
3216 3670 6.884832 TGTGGTTTAACTACATAGATGGAGG 58.115 40.000 10.17 0.00 43.20 4.30
3262 3716 6.017605 GTGATTTTGTAGAGATACATGGCAGG 60.018 42.308 0.00 0.00 0.00 4.85
3264 3718 5.822519 GGTGATTTTGTAGAGATACATGGCA 59.177 40.000 0.00 0.00 0.00 4.92
3266 3720 6.823182 TGTGGTGATTTTGTAGAGATACATGG 59.177 38.462 0.00 0.00 0.00 3.66
3269 3723 6.212589 TCCTGTGGTGATTTTGTAGAGATACA 59.787 38.462 0.00 0.00 0.00 2.29
3270 3724 6.640518 TCCTGTGGTGATTTTGTAGAGATAC 58.359 40.000 0.00 0.00 0.00 2.24
3277 3731 6.531503 TTGTTTTCCTGTGGTGATTTTGTA 57.468 33.333 0.00 0.00 0.00 2.41
3297 3751 4.882842 AACTTGGTCAGTTTTGGTTTGT 57.117 36.364 0.00 0.00 43.89 2.83
3309 3763 5.269991 AGGTAGTAGCTCATAACTTGGTCA 58.730 41.667 0.00 0.00 0.00 4.02
3323 3777 1.188863 TTTGGGACGGAGGTAGTAGC 58.811 55.000 0.00 0.00 0.00 3.58
3328 3782 5.221303 CGTCTTATATTTTGGGACGGAGGTA 60.221 44.000 0.00 0.00 43.69 3.08
3364 3818 5.248020 CCCTTCTGATGGATAGTGCTAGAAT 59.752 44.000 10.93 0.00 0.00 2.40
3371 3825 5.557576 TCATTCCCTTCTGATGGATAGTG 57.442 43.478 10.93 6.23 0.00 2.74
3398 3852 2.676471 CCGGCTGACAAAAGGGGG 60.676 66.667 0.00 0.00 0.00 5.40
3585 4046 0.109132 GGCTTGCCATTTCACCTTCG 60.109 55.000 6.79 0.00 0.00 3.79
3681 4146 5.421277 TGAAGACAACACCGAGTTTCTAAA 58.579 37.500 0.00 0.00 38.74 1.85
3686 4151 3.261981 ACTGAAGACAACACCGAGTTT 57.738 42.857 0.00 0.00 38.74 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.