Multiple sequence alignment - TraesCS4B01G202600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G202600 chr4B 100.000 2839 0 0 1 2839 433646529 433643691 0.000000e+00 5243.0
1 TraesCS4B01G202600 chr4D 91.826 2924 112 43 1 2839 350502006 350499125 0.000000e+00 3958.0
2 TraesCS4B01G202600 chr4D 87.302 63 7 1 2153 2214 218516241 218516179 1.410000e-08 71.3
3 TraesCS4B01G202600 chr4A 85.541 1238 77 21 979 2147 114588256 114589460 0.000000e+00 1201.0
4 TraesCS4B01G202600 chr4A 96.791 592 18 1 2248 2839 114589502 114590092 0.000000e+00 987.0
5 TraesCS4B01G202600 chr4A 88.430 121 14 0 1 121 114587487 114587607 2.280000e-31 147.0
6 TraesCS4B01G202600 chr4A 86.885 61 8 0 2153 2213 323048577 323048637 5.080000e-08 69.4
7 TraesCS4B01G202600 chr2A 97.778 45 1 0 2146 2190 143275584 143275628 8.430000e-11 78.7
8 TraesCS4B01G202600 chr7D 94.000 50 3 0 2154 2203 497815064 497815015 3.030000e-10 76.8
9 TraesCS4B01G202600 chr7A 92.308 52 4 0 2153 2204 63057132 63057081 1.090000e-09 75.0
10 TraesCS4B01G202600 chr1D 91.071 56 4 1 2153 2207 335585082 335585137 1.090000e-09 75.0
11 TraesCS4B01G202600 chr3D 93.617 47 3 0 2155 2201 300775529 300775575 1.410000e-08 71.3
12 TraesCS4B01G202600 chr1B 89.286 56 5 1 2153 2207 451732287 451732342 5.080000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G202600 chr4B 433643691 433646529 2838 True 5243.000000 5243 100.000 1 2839 1 chr4B.!!$R1 2838
1 TraesCS4B01G202600 chr4D 350499125 350502006 2881 True 3958.000000 3958 91.826 1 2839 1 chr4D.!!$R2 2838
2 TraesCS4B01G202600 chr4A 114587487 114590092 2605 False 778.333333 1201 90.254 1 2839 3 chr4A.!!$F2 2838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 833 0.107654 AGATTCCTTGGGCACGCTAC 60.108 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 2195 0.251916 TTCATGTGACCCGGGACATC 59.748 55.0 32.02 21.17 30.14 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 3.420893 TGTTGCTTAAGGATCTTGTGGG 58.579 45.455 4.29 0.00 0.00 4.61
92 93 1.281925 ATTGCCGAGTTCCTGGGGAT 61.282 55.000 0.00 0.00 29.37 3.85
95 96 0.179054 GCCGAGTTCCTGGGGATAAC 60.179 60.000 0.00 0.00 29.82 1.89
106 107 5.733000 TCCTGGGGATAACATAATCTGGTA 58.267 41.667 0.00 0.00 0.00 3.25
109 110 8.135586 TCCTGGGGATAACATAATCTGGTATAT 58.864 37.037 0.00 0.00 37.89 0.86
126 127 9.154632 TCTGGTATATCTTTTGTGGCTAGAATA 57.845 33.333 0.00 0.00 0.00 1.75
190 191 6.583806 GTGTTTTACTGATGAAAGATGGCAAG 59.416 38.462 0.00 0.00 0.00 4.01
200 201 4.592351 TGAAAGATGGCAAGGATTTGGAAA 59.408 37.500 0.00 0.00 34.79 3.13
201 202 5.248934 TGAAAGATGGCAAGGATTTGGAAAT 59.751 36.000 0.00 0.00 34.79 2.17
403 410 9.450807 GAGTATACATGTGAAATTTTGGTATGC 57.549 33.333 9.11 1.47 0.00 3.14
405 412 9.236691 GTATACATGTGAAATTTTGGTATGCAG 57.763 33.333 9.11 0.00 0.00 4.41
414 421 4.987408 TTTTGGTATGCAGTGATCATGG 57.013 40.909 0.00 0.00 0.00 3.66
419 430 6.130692 TGGTATGCAGTGATCATGGATTAT 57.869 37.500 14.07 2.80 30.73 1.28
439 450 7.715686 GGATTATCCTTCCTTGTTTGGTACTAG 59.284 40.741 3.59 0.00 32.53 2.57
453 467 8.776470 TGTTTGGTACTAGTATGTTTTAACTGC 58.224 33.333 5.75 0.00 0.00 4.40
513 575 0.178924 AGAGCCCCATTTGCTTTGGT 60.179 50.000 0.00 0.00 39.69 3.67
534 596 1.745141 GCCTCTTGTGGGTGATGCTAG 60.745 57.143 0.00 0.00 0.00 3.42
626 695 0.321564 TTCAACAGATCACTGCCCCG 60.322 55.000 0.00 0.00 46.95 5.73
668 737 3.341043 CGGATCAATGCCTCGCCG 61.341 66.667 0.00 0.00 0.00 6.46
682 751 4.054825 GCCGGTTGCCCATGTGTG 62.055 66.667 1.90 0.00 0.00 3.82
685 754 2.192861 CGGTTGCCCATGTGTGTGT 61.193 57.895 0.00 0.00 0.00 3.72
700 777 0.461961 TGTGTGTGTGTGTGATCCGA 59.538 50.000 0.00 0.00 0.00 4.55
738 818 8.251383 TCCTCGTTTCTCCATTAGATTAGATT 57.749 34.615 0.00 0.00 33.05 2.40
753 833 0.107654 AGATTCCTTGGGCACGCTAC 60.108 55.000 0.00 0.00 0.00 3.58
785 865 4.645921 GCAACACCACAAGGGCGC 62.646 66.667 0.00 0.00 42.05 6.53
831 922 2.034879 CGGCCTGCACCTGTAACAG 61.035 63.158 0.00 0.00 0.00 3.16
834 925 0.962356 GCCTGCACCTGTAACAGCAT 60.962 55.000 0.00 0.00 36.28 3.79
836 927 0.723414 CTGCACCTGTAACAGCATCG 59.277 55.000 0.00 0.00 36.28 3.84
852 949 1.985447 ATCGCTGCTTTGCACATCCG 61.985 55.000 0.00 0.00 33.79 4.18
873 970 9.988815 CATCCGAAATCCCTATATAAATCTAGG 57.011 37.037 0.00 0.00 35.29 3.02
874 971 9.953429 ATCCGAAATCCCTATATAAATCTAGGA 57.047 33.333 3.58 0.00 37.31 2.94
875 972 9.422681 TCCGAAATCCCTATATAAATCTAGGAG 57.577 37.037 3.58 0.00 37.31 3.69
876 973 9.203163 CCGAAATCCCTATATAAATCTAGGAGT 57.797 37.037 3.58 0.00 37.31 3.85
935 1036 1.202268 GCAGTCACCGCTACGAGTAAT 60.202 52.381 0.00 0.00 0.00 1.89
938 1039 1.402968 GTCACCGCTACGAGTAATCCA 59.597 52.381 0.00 0.00 0.00 3.41
940 1041 1.404391 CACCGCTACGAGTAATCCACT 59.596 52.381 0.00 0.00 41.47 4.00
941 1042 1.404391 ACCGCTACGAGTAATCCACTG 59.596 52.381 0.00 0.00 37.72 3.66
943 1044 1.404391 CGCTACGAGTAATCCACTGGT 59.596 52.381 0.00 0.00 46.63 4.00
944 1045 2.794981 CGCTACGAGTAATCCACTGGTG 60.795 54.545 2.77 0.00 44.89 4.17
945 1046 2.426024 GCTACGAGTAATCCACTGGTGA 59.574 50.000 1.93 0.00 44.89 4.02
946 1047 3.489398 GCTACGAGTAATCCACTGGTGAG 60.489 52.174 1.93 0.00 44.89 3.51
947 1048 2.526432 ACGAGTAATCCACTGGTGAGT 58.474 47.619 1.93 0.00 43.76 3.41
988 1089 0.902516 AGTTCTTGCTCTCCTCCGCT 60.903 55.000 0.00 0.00 0.00 5.52
1003 1104 2.029288 CGCTCACGCACCAAGATGT 61.029 57.895 0.00 0.00 35.30 3.06
1394 1501 3.371063 CCTGGCCAGCAGCAACAG 61.371 66.667 28.39 7.14 46.50 3.16
1733 1865 2.590092 GGCGGCACAGGGAAGTAT 59.410 61.111 3.07 0.00 0.00 2.12
1839 1976 2.525368 TCGACATTCACCTCTCCTGAA 58.475 47.619 0.00 0.00 32.24 3.02
1860 1997 2.907042 ACTGCTTCCCTAACTAGTGCTT 59.093 45.455 0.00 0.00 0.00 3.91
1862 1999 4.530946 ACTGCTTCCCTAACTAGTGCTTTA 59.469 41.667 0.00 0.00 0.00 1.85
1863 2000 4.828829 TGCTTCCCTAACTAGTGCTTTAC 58.171 43.478 0.00 0.00 0.00 2.01
1864 2001 4.285003 TGCTTCCCTAACTAGTGCTTTACA 59.715 41.667 0.00 0.00 0.00 2.41
1866 2003 5.351740 GCTTCCCTAACTAGTGCTTTACAAG 59.648 44.000 0.00 0.00 0.00 3.16
1905 2065 2.440501 CGCGCTCAACATTTGTAATCC 58.559 47.619 5.56 0.00 0.00 3.01
1906 2066 2.159585 CGCGCTCAACATTTGTAATCCA 60.160 45.455 5.56 0.00 0.00 3.41
1935 2106 2.549754 CGGCCTATGCATTTTACTCCTG 59.450 50.000 3.54 0.00 40.13 3.86
2061 2252 7.257722 TGAAATCCTGAAAAACTGAACTGTTC 58.742 34.615 13.49 13.49 0.00 3.18
2086 2278 5.473504 GGATGAGTTACAGAACACAAACCAT 59.526 40.000 8.62 0.00 39.22 3.55
2167 2359 3.463944 ACTCCCTGTAGTGTCAAAAACG 58.536 45.455 0.00 0.00 0.00 3.60
2182 2374 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
2186 2378 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
2190 2382 5.372373 GCTCTTATATTATGGGATGGAGGC 58.628 45.833 0.00 0.00 0.00 4.70
2191 2383 5.605534 CTCTTATATTATGGGATGGAGGCG 58.394 45.833 0.00 0.00 0.00 5.52
2207 2399 3.692593 GGAGGCGGTAGAATTTAAGCAAA 59.307 43.478 0.00 0.00 0.00 3.68
2208 2400 4.157105 GGAGGCGGTAGAATTTAAGCAAAA 59.843 41.667 0.00 0.00 0.00 2.44
2209 2401 5.336134 GGAGGCGGTAGAATTTAAGCAAAAA 60.336 40.000 0.00 0.00 0.00 1.94
2210 2402 6.280855 AGGCGGTAGAATTTAAGCAAAAAT 57.719 33.333 0.00 0.00 0.00 1.82
2211 2403 6.099341 AGGCGGTAGAATTTAAGCAAAAATG 58.901 36.000 0.00 0.00 0.00 2.32
2212 2404 6.071616 AGGCGGTAGAATTTAAGCAAAAATGA 60.072 34.615 0.00 0.00 0.00 2.57
2288 2491 4.143030 GGAGTTGACAAGAACATGATCACG 60.143 45.833 0.00 0.00 0.00 4.35
2324 2527 7.591006 TCCGAGACAAAACTTATGTATCAAC 57.409 36.000 2.75 0.00 38.58 3.18
2403 2606 5.808366 TCCTGGGTAAGCTATCTGTAATG 57.192 43.478 0.00 0.00 0.00 1.90
2721 2925 4.004982 GGAAACGTTATTCCTAACAGGCA 58.995 43.478 11.10 0.00 44.54 4.75
2726 2930 6.584185 ACGTTATTCCTAACAGGCAAAAAT 57.416 33.333 0.00 0.00 37.65 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 0.526211 GAACTCGGCAATGGTTTCCC 59.474 55.000 0.00 0.00 0.00 3.97
78 79 4.682778 TTATGTTATCCCCAGGAACTCG 57.317 45.455 0.00 0.00 34.60 4.18
95 96 8.627208 AGCCACAAAAGATATACCAGATTATG 57.373 34.615 0.00 0.00 0.00 1.90
109 110 6.547141 CCATGGAATATTCTAGCCACAAAAGA 59.453 38.462 5.56 0.00 32.42 2.52
151 152 0.108567 AAACACCAACCACCGCAAAC 60.109 50.000 0.00 0.00 0.00 2.93
190 191 2.427095 CCCGGAGTTCATTTCCAAATCC 59.573 50.000 0.73 0.00 35.13 3.01
200 201 4.301072 TGAGAAATTTCCCGGAGTTCAT 57.699 40.909 14.61 0.00 0.00 2.57
201 202 3.780804 TGAGAAATTTCCCGGAGTTCA 57.219 42.857 14.61 7.19 0.00 3.18
403 410 6.124316 AGGAAGGATAATCCATGATCACTG 57.876 41.667 0.00 0.00 39.61 3.66
405 412 6.302269 ACAAGGAAGGATAATCCATGATCAC 58.698 40.000 0.00 0.00 39.61 3.06
414 421 8.265764 ACTAGTACCAAACAAGGAAGGATAATC 58.734 37.037 0.00 0.00 0.00 1.75
419 430 6.499350 ACATACTAGTACCAAACAAGGAAGGA 59.501 38.462 4.31 0.00 0.00 3.36
439 450 7.292292 TCATGTAACACGCAGTTAAAACATAC 58.708 34.615 3.00 0.00 43.90 2.39
448 462 5.393124 CATCATTTCATGTAACACGCAGTT 58.607 37.500 0.00 0.00 41.61 3.16
453 467 4.621068 AGGCATCATTTCATGTAACACG 57.379 40.909 0.00 0.00 0.00 4.49
492 554 1.553706 CAAAGCAAATGGGGCTCTCT 58.446 50.000 0.00 0.00 41.66 3.10
493 555 0.533951 CCAAAGCAAATGGGGCTCTC 59.466 55.000 0.00 0.00 41.66 3.20
494 556 0.178924 ACCAAAGCAAATGGGGCTCT 60.179 50.000 7.27 0.00 41.66 4.09
497 559 4.699626 CACCAAAGCAAATGGGGC 57.300 55.556 7.27 0.00 42.48 5.80
498 560 1.003476 GGCACCAAAGCAAATGGGG 60.003 57.895 7.27 4.14 44.57 4.96
501 563 2.224113 ACAAGAGGCACCAAAGCAAATG 60.224 45.455 0.00 0.00 35.83 2.32
502 564 2.041701 ACAAGAGGCACCAAAGCAAAT 58.958 42.857 0.00 0.00 35.83 2.32
506 568 1.662044 CCACAAGAGGCACCAAAGC 59.338 57.895 0.00 0.00 0.00 3.51
513 575 1.303561 GCATCACCCACAAGAGGCA 60.304 57.895 0.00 0.00 40.89 4.75
534 596 0.318445 CAAGAAGCAGCAACCACAGC 60.318 55.000 0.00 0.00 0.00 4.40
676 745 2.106477 TCACACACACACACACACAT 57.894 45.000 0.00 0.00 0.00 3.21
677 746 2.006169 GATCACACACACACACACACA 58.994 47.619 0.00 0.00 0.00 3.72
679 748 1.662517 GGATCACACACACACACACA 58.337 50.000 0.00 0.00 0.00 3.72
680 749 0.581529 CGGATCACACACACACACAC 59.418 55.000 0.00 0.00 0.00 3.82
681 750 0.461961 TCGGATCACACACACACACA 59.538 50.000 0.00 0.00 0.00 3.72
682 751 0.859232 GTCGGATCACACACACACAC 59.141 55.000 0.00 0.00 0.00 3.82
685 754 1.269723 GAGAGTCGGATCACACACACA 59.730 52.381 0.00 0.00 0.00 3.72
700 777 1.705873 ACGAGGAACAGTTGGAGAGT 58.294 50.000 0.00 0.00 0.00 3.24
738 818 2.606519 AGGTAGCGTGCCCAAGGA 60.607 61.111 0.00 0.00 0.00 3.36
785 865 1.529010 TGGAGTTGTTGCTGCTGGG 60.529 57.895 0.00 0.00 0.00 4.45
831 922 1.138047 GATGTGCAAAGCAGCGATGC 61.138 55.000 19.88 19.88 40.08 3.91
834 925 2.679934 CGGATGTGCAAAGCAGCGA 61.680 57.895 0.00 0.00 40.08 4.93
836 927 0.039256 TTTCGGATGTGCAAAGCAGC 60.039 50.000 0.00 0.00 40.08 5.25
895 996 0.529833 TGCTGGTGTGGTGTTTGTTG 59.470 50.000 0.00 0.00 0.00 3.33
896 997 0.817013 CTGCTGGTGTGGTGTTTGTT 59.183 50.000 0.00 0.00 0.00 2.83
897 998 1.666209 GCTGCTGGTGTGGTGTTTGT 61.666 55.000 0.00 0.00 0.00 2.83
898 999 1.066257 GCTGCTGGTGTGGTGTTTG 59.934 57.895 0.00 0.00 0.00 2.93
899 1000 1.379710 TGCTGCTGGTGTGGTGTTT 60.380 52.632 0.00 0.00 0.00 2.83
900 1001 1.825191 CTGCTGCTGGTGTGGTGTT 60.825 57.895 0.00 0.00 0.00 3.32
901 1002 2.203252 CTGCTGCTGGTGTGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
902 1003 2.203252 ACTGCTGCTGGTGTGGTG 60.203 61.111 11.29 0.00 0.00 4.17
903 1004 2.111878 GACTGCTGCTGGTGTGGT 59.888 61.111 11.29 0.00 0.00 4.16
904 1005 2.111669 TGACTGCTGCTGGTGTGG 59.888 61.111 11.29 0.00 0.00 4.17
938 1039 1.482593 GGCAGCTATACACTCACCAGT 59.517 52.381 0.00 0.00 0.00 4.00
940 1041 0.830648 GGGCAGCTATACACTCACCA 59.169 55.000 0.00 0.00 0.00 4.17
941 1042 1.069358 GAGGGCAGCTATACACTCACC 59.931 57.143 7.72 0.00 0.00 4.02
943 1044 1.414158 GGAGGGCAGCTATACACTCA 58.586 55.000 13.16 0.00 0.00 3.41
944 1045 0.682292 GGGAGGGCAGCTATACACTC 59.318 60.000 4.61 4.61 0.00 3.51
945 1046 0.031111 TGGGAGGGCAGCTATACACT 60.031 55.000 0.00 0.00 0.00 3.55
946 1047 0.837272 TTGGGAGGGCAGCTATACAC 59.163 55.000 0.00 0.00 0.00 2.90
947 1048 0.837272 GTTGGGAGGGCAGCTATACA 59.163 55.000 0.00 0.00 0.00 2.29
950 1051 0.621571 TCTGTTGGGAGGGCAGCTAT 60.622 55.000 0.00 0.00 0.00 2.97
955 1056 0.768221 AGAACTCTGTTGGGAGGGCA 60.768 55.000 0.00 0.00 37.63 5.36
988 1089 0.107643 TTGGACATCTTGGTGCGTGA 59.892 50.000 0.00 0.00 30.91 4.35
1027 1134 3.832171 CGTCAGAGCAAGCGCGAC 61.832 66.667 12.10 0.04 45.49 5.19
1099 1206 3.282157 CGGCAATGGATCGGCCTG 61.282 66.667 0.00 0.00 45.53 4.85
1171 1278 3.467119 CAAAGACGACGACGCGGG 61.467 66.667 12.47 4.10 43.96 6.13
1172 1279 4.117372 GCAAAGACGACGACGCGG 62.117 66.667 12.47 0.00 43.96 6.46
1173 1280 4.117372 GGCAAAGACGACGACGCG 62.117 66.667 3.53 3.53 43.96 6.01
1177 1284 1.445410 CGGATGGCAAAGACGACGA 60.445 57.895 0.00 0.00 0.00 4.20
1228 1335 2.428622 GGTTGCACCTACACCCGT 59.571 61.111 0.00 0.00 34.73 5.28
1236 1343 3.463728 TACGTTGGCGGTTGCACCT 62.464 57.895 0.00 0.00 45.35 4.00
1601 1733 1.956170 CACGACCGTCTTGCTGCTT 60.956 57.895 0.00 0.00 0.00 3.91
1839 1976 2.541466 AGCACTAGTTAGGGAAGCAGT 58.459 47.619 0.00 0.00 0.00 4.40
1860 1997 6.483307 GGCAGAGCATCATATAACACTTGTAA 59.517 38.462 0.00 0.00 37.82 2.41
1862 1999 4.818546 GGCAGAGCATCATATAACACTTGT 59.181 41.667 0.00 0.00 37.82 3.16
1863 2000 4.084171 CGGCAGAGCATCATATAACACTTG 60.084 45.833 0.00 0.00 37.82 3.16
1864 2001 4.060900 CGGCAGAGCATCATATAACACTT 58.939 43.478 0.00 0.00 37.82 3.16
1866 2003 2.158449 GCGGCAGAGCATCATATAACAC 59.842 50.000 0.00 0.00 37.82 3.32
1905 2065 2.937469 TGCATAGGCCGTGAAATTTG 57.063 45.000 14.43 0.00 40.13 2.32
1906 2066 4.470334 AAATGCATAGGCCGTGAAATTT 57.530 36.364 14.43 14.21 40.13 1.82
2003 2183 3.307691 CCCGGGACATCATAAGTATGCAT 60.308 47.826 18.48 3.79 33.76 3.96
2004 2184 2.038426 CCCGGGACATCATAAGTATGCA 59.962 50.000 18.48 0.00 33.76 3.96
2005 2185 2.038557 ACCCGGGACATCATAAGTATGC 59.961 50.000 32.02 0.00 33.76 3.14
2008 2188 2.696707 GTGACCCGGGACATCATAAGTA 59.303 50.000 32.02 0.00 0.00 2.24
2009 2189 1.485066 GTGACCCGGGACATCATAAGT 59.515 52.381 32.02 0.00 0.00 2.24
2010 2190 1.484653 TGTGACCCGGGACATCATAAG 59.515 52.381 32.02 0.00 0.00 1.73
2011 2191 1.574263 TGTGACCCGGGACATCATAA 58.426 50.000 32.02 10.54 0.00 1.90
2012 2192 1.416030 CATGTGACCCGGGACATCATA 59.584 52.381 32.02 19.58 30.14 2.15
2014 2194 0.907230 TCATGTGACCCGGGACATCA 60.907 55.000 32.02 25.79 30.14 3.07
2015 2195 0.251916 TTCATGTGACCCGGGACATC 59.748 55.000 32.02 21.17 30.14 3.06
2017 2197 0.695924 ATTTCATGTGACCCGGGACA 59.304 50.000 32.02 26.77 0.00 4.02
2018 2198 1.094785 CATTTCATGTGACCCGGGAC 58.905 55.000 32.02 23.87 0.00 4.46
2019 2199 0.988063 TCATTTCATGTGACCCGGGA 59.012 50.000 32.02 4.18 0.00 5.14
2020 2200 1.832883 TTCATTTCATGTGACCCGGG 58.167 50.000 22.25 22.25 0.00 5.73
2021 2201 3.181487 GGATTTCATTTCATGTGACCCGG 60.181 47.826 0.00 0.00 0.00 5.73
2022 2202 3.696051 AGGATTTCATTTCATGTGACCCG 59.304 43.478 0.00 0.00 0.00 5.28
2061 2252 4.084013 GGTTTGTGTTCTGTAACTCATCCG 60.084 45.833 0.00 0.00 38.50 4.18
2086 2278 6.711277 AGTTCATGATACTCTGCTTTTGGTA 58.289 36.000 0.00 0.00 0.00 3.25
2158 2350 8.149973 TCCCATAATATAAGAGCGTTTTTGAC 57.850 34.615 0.00 0.00 0.00 3.18
2160 2352 8.023128 CCATCCCATAATATAAGAGCGTTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
2167 2359 5.372373 GCCTCCATCCCATAATATAAGAGC 58.628 45.833 0.00 0.00 0.00 4.09
2182 2374 3.498777 GCTTAAATTCTACCGCCTCCATC 59.501 47.826 0.00 0.00 0.00 3.51
2186 2378 4.957759 TTTGCTTAAATTCTACCGCCTC 57.042 40.909 0.00 0.00 0.00 4.70
2239 2442 3.330267 GCTTTCAGAGAACAGTGGTAGG 58.670 50.000 0.00 0.00 0.00 3.18
2288 2491 5.862924 TTTGTCTCGGAAATCAGAATCAC 57.137 39.130 0.00 0.00 0.00 3.06
2324 2527 6.795114 ACATGCGTTACTTGATTTTAGTTTCG 59.205 34.615 0.00 0.00 0.00 3.46
2441 2645 3.795623 ATTATACTTCACACGGAGCGT 57.204 42.857 0.00 0.00 42.36 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.