AutoCloner

Multiple sequence alignment - TraesCS4B01G200600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G200600	chr4B	100.000	3096	0	0	958	4053	428844916	428848011	0.000000e+00	5718.0
1	TraesCS4B01G200600	chr4B	100.000	664	0	0	1	664	428843959	428844622	0.000000e+00	1227.0
2	TraesCS4B01G200600	chr4B	84.355	767	114	3	1496	2259	428899342	428900105	0.000000e+00	747.0
3	TraesCS4B01G200600	chr4B	80.911	922	165	9	2463	3377	428900290	428901207	0.000000e+00	717.0
4	TraesCS4B01G200600	chr4B	100.000	62	0	0	4318	4379	428848276	428848337	9.950000e-22	115.0
5	TraesCS4B01G200600	chr4D	97.255	3060	56	6	958	3993	348563786	348566841	0.000000e+00	5160.0
6	TraesCS4B01G200600	chr4D	79.788	1791	327	27	1598	3375	348698393	348700161	0.000000e+00	1269.0
7	TraesCS4B01G200600	chr4D	91.254	686	27	11	1	664	348563003	348563677	0.000000e+00	904.0
8	TraesCS4B01G200600	chr4D	92.647	68	4	1	3987	4053	348566873	348566940	3.600000e-16	97.1
9	TraesCS4B01G200600	chr4A	96.610	2979	54	17	966	3902	116852689	116849716	0.000000e+00	4898.0
10	TraesCS4B01G200600	chr4A	88.841	690	28	14	1	664	116853477	116852811	0.000000e+00	802.0
11	TraesCS4B01G200600	chr3D	77.266	1931	365	54	1466	3377	460180041	460181916	0.000000e+00	1066.0
12	TraesCS4B01G200600	chr3B	77.249	1934	360	58	1466	3377	609801983	609803858	0.000000e+00	1061.0
13	TraesCS4B01G200600	chr3B	79.433	705	127	14	1496	2191	24019141	24018446	2.370000e-132	483.0
14	TraesCS4B01G200600	chr3A	77.070	1932	367	56	1466	3377	602224983	602226858	0.000000e+00	1044.0
15	TraesCS4B01G200600	chr1B	77.016	992	204	22	2437	3412	50205057	50206040	8.280000e-152	547.0
16	TraesCS4B01G200600	chr1A	76.874	947	204	14	2440	3377	31253366	31252426	5.020000e-144	521.0
17	TraesCS4B01G200600	chr5B	79.263	733	142	8	1482	2209	112021360	112020633	1.820000e-138	503.0
18	TraesCS4B01G200600	chr1D	79.057	721	137	12	1478	2191	32738176	32738889	2.370000e-132	483.0
19	TraesCS4B01G200600	chr5A	78.947	703	134	13	1496	2191	96983814	96984509	2.390000e-127	466.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G200600	chr4B	428843959	428848337	4378	False	2353.333333	5718	100.000000	1	4379	3	chr4B.!!$F1	4378
1	TraesCS4B01G200600	chr4B	428899342	428901207	1865	False	732.000000	747	82.633000	1496	3377	2	chr4B.!!$F2	1881
2	TraesCS4B01G200600	chr4D	348563003	348566940	3937	False	2053.700000	5160	93.718667	1	4053	3	chr4D.!!$F2	4052
3	TraesCS4B01G200600	chr4D	348698393	348700161	1768	False	1269.000000	1269	79.788000	1598	3375	1	chr4D.!!$F1	1777
4	TraesCS4B01G200600	chr4A	116849716	116853477	3761	True	2850.000000	4898	92.725500	1	3902	2	chr4A.!!$R1	3901
5	TraesCS4B01G200600	chr3D	460180041	460181916	1875	False	1066.000000	1066	77.266000	1466	3377	1	chr3D.!!$F1	1911
6	TraesCS4B01G200600	chr3B	609801983	609803858	1875	False	1061.000000	1061	77.249000	1466	3377	1	chr3B.!!$F1	1911
7	TraesCS4B01G200600	chr3B	24018446	24019141	695	True	483.000000	483	79.433000	1496	2191	1	chr3B.!!$R1	695
8	TraesCS4B01G200600	chr3A	602224983	602226858	1875	False	1044.000000	1044	77.070000	1466	3377	1	chr3A.!!$F1	1911
9	TraesCS4B01G200600	chr1B	50205057	50206040	983	False	547.000000	547	77.016000	2437	3412	1	chr1B.!!$F1	975
10	TraesCS4B01G200600	chr1A	31252426	31253366	940	True	521.000000	521	76.874000	2440	3377	1	chr1A.!!$R1	937
11	TraesCS4B01G200600	chr5B	112020633	112021360	727	True	503.000000	503	79.263000	1482	2209	1	chr5B.!!$R1	727
12	TraesCS4B01G200600	chr1D	32738176	32738889	713	False	483.000000	483	79.057000	1478	2191	1	chr1D.!!$F1	713
13	TraesCS4B01G200600	chr5A	96983814	96984509	695	False	466.000000	466	78.947000	1496	2191	1	chr5A.!!$F1	695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
256	278	1.423921	ACCGAAACCATCCAAGAAGGT	59.576	47.619	0.0	0.0	34.97	3.50	F
1032	1060	0.531974	TCGACAAGCTGCCGTTCTTT	60.532	50.000	0.0	0.0	0.00	2.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2196	2236	1.109920	GCATGGTCTCGAGCTCCCTA	61.110	60.0	18.86	6.53	0.0	3.53	R
3520	3575	0.250901	ACGCAGCAAACATCTCCCTT	60.251	50.0	0.00	0.00	0.0	3.95	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
69	70	8.481314	AGTGCTATTGATGGATAATGACGATAT	58.519	33.333	0.00	0.00	0.00	1.63
74	75	7.581011	TTGATGGATAATGACGATATCAACG	57.419	36.000	3.12	0.00	41.93	4.10
75	76	6.687604	TGATGGATAATGACGATATCAACGT	58.312	36.000	3.12	0.00	46.58	3.99
77	78	8.466798	TGATGGATAATGACGATATCAACGTAT	58.533	33.333	3.12	0.00	43.97	3.06
78	79	8.634475	ATGGATAATGACGATATCAACGTATG	57.366	34.615	3.12	0.00	43.97	2.39
153	175	6.823678	ATTACTATTACTGTACAACGCTGC	57.176	37.500	0.00	0.00	0.00	5.25
154	176	4.182693	ACTATTACTGTACAACGCTGCA	57.817	40.909	0.00	0.00	0.00	4.41
155	177	4.562082	ACTATTACTGTACAACGCTGCAA	58.438	39.130	0.00	0.00	0.00	4.08
156	178	4.992319	ACTATTACTGTACAACGCTGCAAA	59.008	37.500	0.00	0.00	0.00	3.68
157	179	5.642063	ACTATTACTGTACAACGCTGCAAAT	59.358	36.000	0.00	0.00	0.00	2.32
252	274	2.370519	TGAGAACCGAAACCATCCAAGA	59.629	45.455	0.00	0.00	0.00	3.02
256	278	1.423921	ACCGAAACCATCCAAGAAGGT	59.576	47.619	0.00	0.00	34.97	3.50
275	297	4.962155	AGGTAGTCCAAAAAGACTGACAG	58.038	43.478	0.00	0.00	46.54	3.51
595	621	2.031163	CGCCAATCTCGATCCCCC	59.969	66.667	0.00	0.00	0.00	5.40
1032	1060	0.531974	TCGACAAGCTGCCGTTCTTT	60.532	50.000	0.00	0.00	0.00	2.52
2196	2236	4.034258	TTCGCGCTCGACCTCGTT	62.034	61.111	5.56	0.00	45.43	3.85
2808	2851	4.980805	GCCTTCGCGGTGACCACA	62.981	66.667	6.13	0.00	34.25	4.17
3520	3575	1.472552	CCGCGTGTGATTAAGATGGGA	60.473	52.381	4.92	0.00	0.00	4.37
3553	3609	3.376540	TGCTGCGTGTAAATTTGTTTCC	58.623	40.909	0.00	0.00	0.00	3.13
3620	3680	3.243234	CCGACTATATGATCCGCCATCTC	60.243	52.174	0.00	0.00	31.92	2.75
3652	3713	4.900635	TTGAAACTTCAAGTTCAGAGGC	57.099	40.909	2.45	0.00	41.88	4.70
3665	3726	0.784778	CAGAGGCGTCGACTTTGTTC	59.215	55.000	14.70	4.36	0.00	3.18
3710	3789	3.279434	AGAACGATGGGAAAGGTATTGC	58.721	45.455	0.00	0.00	0.00	3.56
3725	3804	4.991056	AGGTATTGCTGTGACGCATATAAG	59.009	41.667	3.26	0.00	40.04	1.73
3726	3805	3.885484	ATTGCTGTGACGCATATAAGC	57.115	42.857	3.26	0.00	40.04	3.09
3727	3806	2.307934	TGCTGTGACGCATATAAGCA	57.692	45.000	0.34	0.00	38.27	3.91
3728	3807	2.204237	TGCTGTGACGCATATAAGCAG	58.796	47.619	0.34	0.00	35.84	4.24
3918	4000	1.008995	CCTGCGTCGGTTTGTTTGG	60.009	57.895	0.00	0.00	0.00	3.28
3919	4001	1.008995	CTGCGTCGGTTTGTTTGGG	60.009	57.895	0.00	0.00	0.00	4.12
3922	4004	1.008995	CGTCGGTTTGTTTGGGCTG	60.009	57.895	0.00	0.00	0.00	4.85
3952	4034	1.143889	TGACCCACACAAACCATAGCA	59.856	47.619	0.00	0.00	0.00	3.49
3955	4037	0.521291	CCACACAAACCATAGCACCG	59.479	55.000	0.00	0.00	0.00	4.94
3965	4047	2.565645	ATAGCACCGCCGCCTAGAG	61.566	63.158	0.00	0.00	0.00	2.43
4007	4127	1.363807	GTTGCAGCAGGGTTGTTCC	59.636	57.895	0.00	0.00	0.00	3.62
4039	4159	5.513849	TCGCGTATGTATATGCCTATTTTCG	59.486	40.000	5.77	0.00	41.15	3.46
4040	4160	5.287752	CGCGTATGTATATGCCTATTTTCGT	59.712	40.000	0.00	0.00	41.15	3.85
4048	4168	3.266510	TGCCTATTTTCGTGCTGATCT	57.733	42.857	0.00	0.00	0.00	2.75
4050	4170	3.374988	TGCCTATTTTCGTGCTGATCTTG	59.625	43.478	0.00	0.00	0.00	3.02
4052	4172	3.941483	CCTATTTTCGTGCTGATCTTGGT	59.059	43.478	0.00	0.00	0.00	3.67
4339	4459	4.674281	ATTACGTGATTCTCCTCTTCCC	57.326	45.455	0.00	0.00	0.00	3.97
4340	4460	1.196012	ACGTGATTCTCCTCTTCCCC	58.804	55.000	0.00	0.00	0.00	4.81
4341	4461	0.103208	CGTGATTCTCCTCTTCCCCG	59.897	60.000	0.00	0.00	0.00	5.73
4342	4462	1.486211	GTGATTCTCCTCTTCCCCGA	58.514	55.000	0.00	0.00	0.00	5.14
4343	4463	2.043227	GTGATTCTCCTCTTCCCCGAT	58.957	52.381	0.00	0.00	0.00	4.18
4344	4464	2.042464	TGATTCTCCTCTTCCCCGATG	58.958	52.381	0.00	0.00	0.00	3.84
4345	4465	2.043227	GATTCTCCTCTTCCCCGATGT	58.957	52.381	0.00	0.00	0.00	3.06
4346	4466	1.952621	TTCTCCTCTTCCCCGATGTT	58.047	50.000	0.00	0.00	0.00	2.71
4347	4467	1.952621	TCTCCTCTTCCCCGATGTTT	58.047	50.000	0.00	0.00	0.00	2.83
4348	4468	1.831736	TCTCCTCTTCCCCGATGTTTC	59.168	52.381	0.00	0.00	0.00	2.78
4349	4469	0.535335	TCCTCTTCCCCGATGTTTCG	59.465	55.000	0.00	0.00	45.08	3.46
4366	4486	3.975992	CGGTTCAAAGCGGATCTTG	57.024	52.632	6.45	0.00	45.30	3.02
4367	4487	1.438651	CGGTTCAAAGCGGATCTTGA	58.561	50.000	6.45	0.00	45.30	3.02
4368	4488	1.394917	CGGTTCAAAGCGGATCTTGAG	59.605	52.381	6.45	0.00	45.30	3.02
4369	4489	2.427506	GGTTCAAAGCGGATCTTGAGT	58.572	47.619	0.00	0.00	34.67	3.41
4370	4490	2.416893	GGTTCAAAGCGGATCTTGAGTC	59.583	50.000	0.00	0.00	34.67	3.36
4371	4491	3.067106	GTTCAAAGCGGATCTTGAGTCA	58.933	45.455	0.00	0.00	34.67	3.41
4372	4492	3.616956	TCAAAGCGGATCTTGAGTCAT	57.383	42.857	0.00	0.00	34.67	3.06
4373	4493	3.525537	TCAAAGCGGATCTTGAGTCATC	58.474	45.455	0.00	0.00	34.67	2.92
4374	4494	2.611225	AAGCGGATCTTGAGTCATCC	57.389	50.000	0.00	0.00	36.01	3.51
4375	4495	1.489481	AGCGGATCTTGAGTCATCCA	58.511	50.000	11.03	0.00	38.92	3.41
4376	4496	1.137872	AGCGGATCTTGAGTCATCCAC	59.862	52.381	11.03	2.30	38.92	4.02
4377	4497	1.808133	GCGGATCTTGAGTCATCCACC	60.808	57.143	11.03	4.92	38.92	4.61
4378	4498	1.202580	CGGATCTTGAGTCATCCACCC	60.203	57.143	11.03	1.72	38.92	4.61

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
69	70	3.250744	GCAGAACTAGCACATACGTTGA	58.749	45.455	0.00	0.00	0.00	3.18
73	74	3.060940	CGATTGCAGAACTAGCACATACG	60.061	47.826	0.00	0.00	42.54	3.06
74	75	3.302740	GCGATTGCAGAACTAGCACATAC	60.303	47.826	0.00	0.00	42.54	2.39
75	76	2.866156	GCGATTGCAGAACTAGCACATA	59.134	45.455	0.00	0.00	42.54	2.29
77	78	1.078709	GCGATTGCAGAACTAGCACA	58.921	50.000	0.00	0.00	42.54	4.57
78	79	3.885777	GCGATTGCAGAACTAGCAC	57.114	52.632	0.00	0.00	42.54	4.40
132	154	5.313520	TGCAGCGTTGTACAGTAATAGTA	57.686	39.130	0.00	0.00	0.00	1.82
134	156	5.524511	TTTGCAGCGTTGTACAGTAATAG	57.475	39.130	0.00	0.00	0.00	1.73
137	159	5.926214	TTATTTGCAGCGTTGTACAGTAA	57.074	34.783	0.00	0.00	0.00	2.24
138	160	7.598189	TTATTATTTGCAGCGTTGTACAGTA	57.402	32.000	0.00	0.00	0.00	2.74
139	161	6.489127	TTATTATTTGCAGCGTTGTACAGT	57.511	33.333	0.00	0.00	0.00	3.55
141	163	6.087522	GGTTTATTATTTGCAGCGTTGTACA	58.912	36.000	0.00	0.00	0.00	2.90
142	164	5.513849	GGGTTTATTATTTGCAGCGTTGTAC	59.486	40.000	0.00	0.00	0.00	2.90
144	166	4.021894	TGGGTTTATTATTTGCAGCGTTGT	60.022	37.500	0.00	0.00	0.00	3.32
148	170	4.489810	TGTTGGGTTTATTATTTGCAGCG	58.510	39.130	0.00	0.00	0.00	5.18
149	171	6.105333	TCATGTTGGGTTTATTATTTGCAGC	58.895	36.000	0.00	0.00	0.00	5.25
151	173	7.548427	CACATCATGTTGGGTTTATTATTTGCA	59.452	33.333	8.58	0.00	0.00	4.08
152	174	7.465781	GCACATCATGTTGGGTTTATTATTTGC	60.466	37.037	7.82	0.91	0.00	3.68
153	175	7.011295	GGCACATCATGTTGGGTTTATTATTTG	59.989	37.037	7.82	0.00	0.00	2.32
154	176	7.047271	GGCACATCATGTTGGGTTTATTATTT	58.953	34.615	7.82	0.00	0.00	1.40
155	177	6.155910	TGGCACATCATGTTGGGTTTATTATT	59.844	34.615	7.82	0.00	0.00	1.40
156	178	5.660417	TGGCACATCATGTTGGGTTTATTAT	59.340	36.000	7.82	0.00	0.00	1.28
157	179	5.019470	TGGCACATCATGTTGGGTTTATTA	58.981	37.500	7.82	0.00	0.00	0.98
190	212	7.095271	GCTCTTGCTAAGATGGAAATATCTGAC	60.095	40.741	0.00	0.00	36.82	3.51
252	274	5.104485	ACTGTCAGTCTTTTTGGACTACCTT	60.104	40.000	0.00	0.00	43.75	3.50
256	278	5.984725	TCAACTGTCAGTCTTTTTGGACTA	58.015	37.500	5.82	0.00	43.75	2.59
275	297	4.082463	TGTGGAGGCGGAATTTAAATCAAC	60.082	41.667	0.10	0.00	0.00	3.18
434	460	2.936032	GGTGGGTGGAGGGCTCTT	60.936	66.667	0.00	0.00	0.00	2.85
601	629	3.567797	GATGAGGTTGGCGAGCGC	61.568	66.667	6.27	6.27	41.06	5.92
2196	2236	1.109920	GCATGGTCTCGAGCTCCCTA	61.110	60.000	18.86	6.53	0.00	3.53
3520	3575	0.250901	ACGCAGCAAACATCTCCCTT	60.251	50.000	0.00	0.00	0.00	3.95
3553	3609	5.733226	TGCCATGATATCGTTACAACTTG	57.267	39.130	0.00	0.00	0.00	3.16
3620	3680	5.770162	ACTTGAAGTTTCAAATGTAGAGGGG	59.230	40.000	8.48	0.00	45.61	4.79
3652	3713	1.986698	ATACCCGAACAAAGTCGACG	58.013	50.000	10.46	0.00	43.86	5.12
3665	3726	1.686587	TCATGGAGCACACTATACCCG	59.313	52.381	0.00	0.00	0.00	5.28
3710	3789	1.528586	GCCTGCTTATATGCGTCACAG	59.471	52.381	6.16	0.00	35.36	3.66
3725	3804	1.545582	ACCAAACATATGTGTGCCTGC	59.454	47.619	19.12	0.00	38.92	4.85
3726	3805	2.819019	TCACCAAACATATGTGTGCCTG	59.181	45.455	19.12	15.41	38.92	4.85
3727	3806	3.084039	CTCACCAAACATATGTGTGCCT	58.916	45.455	19.12	4.79	38.92	4.75
3728	3807	2.415893	GCTCACCAAACATATGTGTGCC	60.416	50.000	19.12	9.15	41.27	5.01
3918	4000	2.034221	GTCACCTCCCCAACAGCC	59.966	66.667	0.00	0.00	0.00	4.85
3919	4001	2.034221	GGTCACCTCCCCAACAGC	59.966	66.667	0.00	0.00	0.00	4.40
3941	4023	2.791256	CGGCGGTGCTATGGTTTG	59.209	61.111	0.00	0.00	0.00	2.93
3947	4029	2.520982	TCTAGGCGGCGGTGCTAT	60.521	61.111	9.78	0.00	34.52	2.97
3952	4034	3.470888	AATGCTCTAGGCGGCGGT	61.471	61.111	9.78	0.00	45.43	5.68
3955	4037	0.871057	GAATCAATGCTCTAGGCGGC	59.129	55.000	0.00	0.00	45.43	6.53
3961	4043	2.439507	GAGGGGGTGAATCAATGCTCTA	59.560	50.000	0.00	0.00	0.00	2.43
3965	4047	1.685148	GAGAGGGGGTGAATCAATGC	58.315	55.000	0.00	0.00	0.00	3.56
4007	4127	4.027945	GCATATACATACGCGAACATACCG	60.028	45.833	15.93	0.00	0.00	4.02
4317	4437	4.141688	GGGGAAGAGGAGAATCACGTAATT	60.142	45.833	0.00	0.00	36.25	1.40
4318	4438	3.388350	GGGGAAGAGGAGAATCACGTAAT	59.612	47.826	0.00	0.00	36.25	1.89
4319	4439	2.764572	GGGGAAGAGGAGAATCACGTAA	59.235	50.000	0.00	0.00	36.25	3.18
4320	4440	2.385803	GGGGAAGAGGAGAATCACGTA	58.614	52.381	0.00	0.00	36.25	3.57
4321	4441	1.196012	GGGGAAGAGGAGAATCACGT	58.804	55.000	0.00	0.00	36.25	4.49
4322	4442	0.103208	CGGGGAAGAGGAGAATCACG	59.897	60.000	0.00	0.00	36.25	4.35
4323	4443	1.486211	TCGGGGAAGAGGAGAATCAC	58.514	55.000	0.00	0.00	36.25	3.06
4324	4444	2.042464	CATCGGGGAAGAGGAGAATCA	58.958	52.381	0.00	0.00	36.25	2.57
4325	4445	2.043227	ACATCGGGGAAGAGGAGAATC	58.957	52.381	0.00	0.00	0.00	2.52
4326	4446	2.182516	ACATCGGGGAAGAGGAGAAT	57.817	50.000	0.00	0.00	0.00	2.40
4327	4447	1.952621	AACATCGGGGAAGAGGAGAA	58.047	50.000	0.00	0.00	0.00	2.87
4328	4448	1.831736	GAAACATCGGGGAAGAGGAGA	59.168	52.381	0.00	0.00	0.00	3.71
4329	4449	1.471676	CGAAACATCGGGGAAGAGGAG	60.472	57.143	0.00	0.00	0.00	3.69
4330	4450	0.535335	CGAAACATCGGGGAAGAGGA	59.465	55.000	0.00	0.00	0.00	3.71
4331	4451	3.065575	CGAAACATCGGGGAAGAGG	57.934	57.895	0.00	0.00	0.00	3.69
4340	4460	1.591248	CGCTTTGAACCGAAACATCG	58.409	50.000	0.00	0.00	0.00	3.84
4341	4461	1.533731	TCCGCTTTGAACCGAAACATC	59.466	47.619	0.00	0.00	0.00	3.06
4342	4462	1.600023	TCCGCTTTGAACCGAAACAT	58.400	45.000	0.00	0.00	0.00	2.71
4343	4463	1.533731	GATCCGCTTTGAACCGAAACA	59.466	47.619	0.00	0.00	0.00	2.83
4344	4464	1.804748	AGATCCGCTTTGAACCGAAAC	59.195	47.619	0.00	0.00	0.00	2.78
4345	4465	2.178912	AGATCCGCTTTGAACCGAAA	57.821	45.000	0.00	0.00	0.00	3.46
4346	4466	1.804151	CAAGATCCGCTTTGAACCGAA	59.196	47.619	0.00	0.00	33.60	4.30
4347	4467	1.001520	TCAAGATCCGCTTTGAACCGA	59.998	47.619	0.00	0.00	33.60	4.69
4348	4468	1.394917	CTCAAGATCCGCTTTGAACCG	59.605	52.381	0.00	0.00	33.60	4.44
4349	4469	2.416893	GACTCAAGATCCGCTTTGAACC	59.583	50.000	0.00	0.00	33.60	3.62
4350	4470	3.067106	TGACTCAAGATCCGCTTTGAAC	58.933	45.455	0.00	0.00	33.60	3.18
4351	4471	3.401033	TGACTCAAGATCCGCTTTGAA	57.599	42.857	0.00	0.00	33.60	2.69
4352	4472	3.525537	GATGACTCAAGATCCGCTTTGA	58.474	45.455	0.00	0.00	33.60	2.69
4353	4473	2.611292	GGATGACTCAAGATCCGCTTTG	59.389	50.000	0.00	0.00	33.60	2.77
4354	4474	2.237143	TGGATGACTCAAGATCCGCTTT	59.763	45.455	0.00	0.00	41.10	3.51
4355	4475	1.833630	TGGATGACTCAAGATCCGCTT	59.166	47.619	0.00	0.00	41.10	4.68
4356	4476	1.137872	GTGGATGACTCAAGATCCGCT	59.862	52.381	0.00	0.00	43.28	5.52
4357	4477	1.576356	GTGGATGACTCAAGATCCGC	58.424	55.000	0.00	0.00	41.10	5.54
4358	4478	1.202580	GGGTGGATGACTCAAGATCCG	60.203	57.143	0.00	0.00	41.10	4.18
4359	4479	2.629336	GGGTGGATGACTCAAGATCC	57.371	55.000	0.00	0.00	38.98	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.