Multiple sequence alignment - TraesCS4B01G200200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G200200 chr4B 100.000 2594 0 0 1 2594 428463255 428465848 0.000000e+00 4791.0
1 TraesCS4B01G200200 chr4B 94.000 50 3 0 245 294 428191634 428191683 2.770000e-10 76.8
2 TraesCS4B01G200200 chr2B 91.586 1236 71 18 699 1915 202908372 202909593 0.000000e+00 1676.0
3 TraesCS4B01G200200 chr2B 90.650 1230 88 9 704 1913 29143540 29144762 0.000000e+00 1609.0
4 TraesCS4B01G200200 chr2B 89.225 1058 92 13 873 1923 526381901 526382943 0.000000e+00 1303.0
5 TraesCS4B01G200200 chr2B 75.938 640 94 43 1301 1913 105541516 105540910 9.150000e-70 274.0
6 TraesCS4B01G200200 chr2B 95.968 124 5 0 1792 1915 418650065 418649942 4.380000e-48 202.0
7 TraesCS4B01G200200 chr2B 89.873 79 8 0 1 79 794370060 794370138 4.570000e-18 102.0
8 TraesCS4B01G200200 chr7B 91.315 1232 87 5 702 1915 153645221 153643992 0.000000e+00 1664.0
9 TraesCS4B01G200200 chr7B 92.371 1101 65 5 828 1913 577140177 577141273 0.000000e+00 1550.0
10 TraesCS4B01G200200 chr7B 73.921 1135 196 73 829 1915 683980997 683979915 5.280000e-97 364.0
11 TraesCS4B01G200200 chr7B 86.290 124 17 0 1790 1913 687819753 687819876 4.500000e-28 135.0
12 TraesCS4B01G200200 chr7B 86.290 124 17 0 1790 1913 687855445 687855568 4.500000e-28 135.0
13 TraesCS4B01G200200 chr7B 88.608 79 9 0 1 79 14888987 14889065 2.120000e-16 97.1
14 TraesCS4B01G200200 chr5B 91.433 1214 84 9 704 1913 440290900 440289703 0.000000e+00 1648.0
15 TraesCS4B01G200200 chr5B 90.468 1217 67 17 706 1913 497464288 497465464 0.000000e+00 1559.0
16 TraesCS4B01G200200 chr5B 88.646 1233 83 12 701 1915 609842745 609843938 0.000000e+00 1448.0
17 TraesCS4B01G200200 chr5B 86.817 1244 94 25 701 1913 513988484 513989688 0.000000e+00 1325.0
18 TraesCS4B01G200200 chr1B 91.227 1231 77 9 702 1915 259489621 259488405 0.000000e+00 1646.0
19 TraesCS4B01G200200 chr1B 88.983 1180 55 20 701 1864 340367048 340365928 0.000000e+00 1389.0
20 TraesCS4B01G200200 chr1B 91.414 990 77 7 929 1915 466286646 466285662 0.000000e+00 1351.0
21 TraesCS4B01G200200 chr1B 84.691 307 33 9 701 1001 667886671 667886969 7.020000e-76 294.0
22 TraesCS4B01G200200 chr1B 87.805 82 10 0 1 82 572112688 572112769 2.120000e-16 97.1
23 TraesCS4B01G200200 chr3B 89.605 1241 104 13 701 1920 593141100 593142336 0.000000e+00 1554.0
24 TraesCS4B01G200200 chr4A 90.541 1184 86 8 702 1864 656850393 656851571 0.000000e+00 1543.0
25 TraesCS4B01G200200 chr4A 92.955 582 33 6 116 693 117282750 117282173 0.000000e+00 841.0
26 TraesCS4B01G200200 chr4A 90.099 404 32 6 2193 2594 117281945 117281548 3.830000e-143 518.0
27 TraesCS4B01G200200 chr4A 93.237 207 13 1 1912 2117 117282156 117281950 1.170000e-78 303.0
28 TraesCS4B01G200200 chr4A 92.000 50 4 0 245 294 117704831 117704782 1.290000e-08 71.3
29 TraesCS4B01G200200 chr4D 91.279 688 40 6 1912 2594 348305189 348305861 0.000000e+00 920.0
30 TraesCS4B01G200200 chr4D 94.727 531 22 4 179 704 348304663 348305192 0.000000e+00 821.0
31 TraesCS4B01G200200 chr4D 94.000 50 3 0 245 294 348036262 348036311 2.770000e-10 76.8
32 TraesCS4B01G200200 chr3A 90.446 157 12 2 1757 1913 572550212 572550059 1.220000e-48 204.0
33 TraesCS4B01G200200 chr6B 96.429 84 3 0 1 84 621044496 621044413 3.480000e-29 139.0
34 TraesCS4B01G200200 chr6B 83.333 78 12 1 2174 2251 436493263 436493339 1.290000e-08 71.3
35 TraesCS4B01G200200 chr6B 93.182 44 2 1 2259 2302 716011150 716011108 2.160000e-06 63.9
36 TraesCS4B01G200200 chr5D 91.011 89 6 1 1 87 556046084 556045996 4.530000e-23 119.0
37 TraesCS4B01G200200 chr5D 80.769 78 12 2 2177 2251 367999994 368000071 1.000000e-04 58.4
38 TraesCS4B01G200200 chr3D 90.789 76 7 0 1 76 104777817 104777892 4.570000e-18 102.0
39 TraesCS4B01G200200 chr2A 77.551 147 30 3 2169 2312 36850747 36850893 4.600000e-13 86.1
40 TraesCS4B01G200200 chr6D 82.667 75 11 1 2174 2246 274302732 274302806 5.990000e-07 65.8
41 TraesCS4B01G200200 chr6A 82.432 74 11 2 2174 2246 392942001 392941929 2.160000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G200200 chr4B 428463255 428465848 2593 False 4791.0 4791 100.000 1 2594 1 chr4B.!!$F2 2593
1 TraesCS4B01G200200 chr2B 202908372 202909593 1221 False 1676.0 1676 91.586 699 1915 1 chr2B.!!$F2 1216
2 TraesCS4B01G200200 chr2B 29143540 29144762 1222 False 1609.0 1609 90.650 704 1913 1 chr2B.!!$F1 1209
3 TraesCS4B01G200200 chr2B 526381901 526382943 1042 False 1303.0 1303 89.225 873 1923 1 chr2B.!!$F3 1050
4 TraesCS4B01G200200 chr2B 105540910 105541516 606 True 274.0 274 75.938 1301 1913 1 chr2B.!!$R1 612
5 TraesCS4B01G200200 chr7B 153643992 153645221 1229 True 1664.0 1664 91.315 702 1915 1 chr7B.!!$R1 1213
6 TraesCS4B01G200200 chr7B 577140177 577141273 1096 False 1550.0 1550 92.371 828 1913 1 chr7B.!!$F2 1085
7 TraesCS4B01G200200 chr7B 683979915 683980997 1082 True 364.0 364 73.921 829 1915 1 chr7B.!!$R2 1086
8 TraesCS4B01G200200 chr5B 440289703 440290900 1197 True 1648.0 1648 91.433 704 1913 1 chr5B.!!$R1 1209
9 TraesCS4B01G200200 chr5B 497464288 497465464 1176 False 1559.0 1559 90.468 706 1913 1 chr5B.!!$F1 1207
10 TraesCS4B01G200200 chr5B 609842745 609843938 1193 False 1448.0 1448 88.646 701 1915 1 chr5B.!!$F3 1214
11 TraesCS4B01G200200 chr5B 513988484 513989688 1204 False 1325.0 1325 86.817 701 1913 1 chr5B.!!$F2 1212
12 TraesCS4B01G200200 chr1B 259488405 259489621 1216 True 1646.0 1646 91.227 702 1915 1 chr1B.!!$R1 1213
13 TraesCS4B01G200200 chr1B 340365928 340367048 1120 True 1389.0 1389 88.983 701 1864 1 chr1B.!!$R2 1163
14 TraesCS4B01G200200 chr1B 466285662 466286646 984 True 1351.0 1351 91.414 929 1915 1 chr1B.!!$R3 986
15 TraesCS4B01G200200 chr3B 593141100 593142336 1236 False 1554.0 1554 89.605 701 1920 1 chr3B.!!$F1 1219
16 TraesCS4B01G200200 chr4A 656850393 656851571 1178 False 1543.0 1543 90.541 702 1864 1 chr4A.!!$F1 1162
17 TraesCS4B01G200200 chr4A 117281548 117282750 1202 True 554.0 841 92.097 116 2594 3 chr4A.!!$R2 2478
18 TraesCS4B01G200200 chr4D 348304663 348305861 1198 False 870.5 920 93.003 179 2594 2 chr4D.!!$F2 2415

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 1.406069 CCACTCACTATCAGGTGTGGC 60.406 57.143 0.0 0.0 38.28 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 2200 0.036306 GATGTCCACCCGTTTCCAGT 59.964 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.378710 AGCAACTCAGTTTCTTCTTAAACC 57.621 37.500 0.00 0.00 39.66 3.27
24 25 5.007724 AGCAACTCAGTTTCTTCTTAAACCG 59.992 40.000 0.00 0.00 39.66 4.44
25 26 5.007332 GCAACTCAGTTTCTTCTTAAACCGA 59.993 40.000 0.00 0.00 39.66 4.69
26 27 6.293462 GCAACTCAGTTTCTTCTTAAACCGAT 60.293 38.462 0.00 0.00 39.66 4.18
27 28 7.291567 CAACTCAGTTTCTTCTTAAACCGATC 58.708 38.462 0.00 0.00 39.66 3.69
28 29 5.932883 ACTCAGTTTCTTCTTAAACCGATCC 59.067 40.000 0.00 0.00 39.66 3.36
29 30 6.110411 TCAGTTTCTTCTTAAACCGATCCT 57.890 37.500 0.00 0.00 39.66 3.24
30 31 6.164176 TCAGTTTCTTCTTAAACCGATCCTC 58.836 40.000 0.00 0.00 39.66 3.71
31 32 5.062308 CAGTTTCTTCTTAAACCGATCCTCG 59.938 44.000 0.00 0.00 39.66 4.63
32 33 5.047519 AGTTTCTTCTTAAACCGATCCTCGA 60.048 40.000 0.00 0.00 40.30 4.04
33 34 5.593679 TTCTTCTTAAACCGATCCTCGAT 57.406 39.130 0.00 0.00 43.74 3.59
34 35 6.704289 TTCTTCTTAAACCGATCCTCGATA 57.296 37.500 0.00 0.00 43.74 2.92
35 36 6.069684 TCTTCTTAAACCGATCCTCGATAC 57.930 41.667 0.00 0.00 43.74 2.24
36 37 5.591472 TCTTCTTAAACCGATCCTCGATACA 59.409 40.000 0.00 0.00 43.74 2.29
37 38 5.179045 TCTTAAACCGATCCTCGATACAC 57.821 43.478 0.00 0.00 43.74 2.90
38 39 4.885907 TCTTAAACCGATCCTCGATACACT 59.114 41.667 0.00 0.00 43.74 3.55
39 40 5.359009 TCTTAAACCGATCCTCGATACACTT 59.641 40.000 0.00 0.00 43.74 3.16
40 41 3.712091 AACCGATCCTCGATACACTTC 57.288 47.619 0.00 0.00 43.74 3.01
41 42 1.955080 ACCGATCCTCGATACACTTCC 59.045 52.381 0.00 0.00 43.74 3.46
42 43 1.954382 CCGATCCTCGATACACTTCCA 59.046 52.381 0.00 0.00 43.74 3.53
43 44 2.287668 CCGATCCTCGATACACTTCCAC 60.288 54.545 0.00 0.00 43.74 4.02
44 45 2.619177 CGATCCTCGATACACTTCCACT 59.381 50.000 0.00 0.00 43.74 4.00
45 46 3.304123 CGATCCTCGATACACTTCCACTC 60.304 52.174 0.00 0.00 43.74 3.51
46 47 3.081710 TCCTCGATACACTTCCACTCA 57.918 47.619 0.00 0.00 0.00 3.41
47 48 2.753452 TCCTCGATACACTTCCACTCAC 59.247 50.000 0.00 0.00 0.00 3.51
48 49 2.755655 CCTCGATACACTTCCACTCACT 59.244 50.000 0.00 0.00 0.00 3.41
49 50 3.945921 CCTCGATACACTTCCACTCACTA 59.054 47.826 0.00 0.00 0.00 2.74
50 51 4.580995 CCTCGATACACTTCCACTCACTAT 59.419 45.833 0.00 0.00 0.00 2.12
51 52 5.067936 CCTCGATACACTTCCACTCACTATT 59.932 44.000 0.00 0.00 0.00 1.73
52 53 6.405953 CCTCGATACACTTCCACTCACTATTT 60.406 42.308 0.00 0.00 0.00 1.40
53 54 6.330278 TCGATACACTTCCACTCACTATTTG 58.670 40.000 0.00 0.00 0.00 2.32
54 55 6.071560 TCGATACACTTCCACTCACTATTTGT 60.072 38.462 0.00 0.00 0.00 2.83
55 56 6.590292 CGATACACTTCCACTCACTATTTGTT 59.410 38.462 0.00 0.00 0.00 2.83
56 57 7.758076 CGATACACTTCCACTCACTATTTGTTA 59.242 37.037 0.00 0.00 0.00 2.41
57 58 9.088512 GATACACTTCCACTCACTATTTGTTAG 57.911 37.037 0.00 0.00 0.00 2.34
58 59 5.701290 ACACTTCCACTCACTATTTGTTAGC 59.299 40.000 0.00 0.00 0.00 3.09
59 60 5.934625 CACTTCCACTCACTATTTGTTAGCT 59.065 40.000 0.00 0.00 0.00 3.32
60 61 6.428159 CACTTCCACTCACTATTTGTTAGCTT 59.572 38.462 0.00 0.00 0.00 3.74
61 62 7.602644 CACTTCCACTCACTATTTGTTAGCTTA 59.397 37.037 0.00 0.00 0.00 3.09
62 63 8.322091 ACTTCCACTCACTATTTGTTAGCTTAT 58.678 33.333 0.00 0.00 0.00 1.73
63 64 8.492673 TTCCACTCACTATTTGTTAGCTTATG 57.507 34.615 0.00 0.00 0.00 1.90
64 65 7.847096 TCCACTCACTATTTGTTAGCTTATGA 58.153 34.615 0.00 0.00 0.00 2.15
65 66 8.486210 TCCACTCACTATTTGTTAGCTTATGAT 58.514 33.333 0.00 0.00 0.00 2.45
66 67 8.554528 CCACTCACTATTTGTTAGCTTATGATG 58.445 37.037 0.00 0.00 0.00 3.07
67 68 8.554528 CACTCACTATTTGTTAGCTTATGATGG 58.445 37.037 0.00 0.00 0.00 3.51
68 69 7.716998 ACTCACTATTTGTTAGCTTATGATGGG 59.283 37.037 0.00 0.00 0.00 4.00
69 70 6.998074 TCACTATTTGTTAGCTTATGATGGGG 59.002 38.462 0.00 0.00 0.00 4.96
70 71 6.998074 CACTATTTGTTAGCTTATGATGGGGA 59.002 38.462 0.00 0.00 0.00 4.81
71 72 7.502226 CACTATTTGTTAGCTTATGATGGGGAA 59.498 37.037 0.00 0.00 0.00 3.97
72 73 8.227507 ACTATTTGTTAGCTTATGATGGGGAAT 58.772 33.333 0.00 0.00 0.00 3.01
73 74 6.713762 TTTGTTAGCTTATGATGGGGAATG 57.286 37.500 0.00 0.00 0.00 2.67
74 75 4.728772 TGTTAGCTTATGATGGGGAATGG 58.271 43.478 0.00 0.00 0.00 3.16
75 76 2.986534 AGCTTATGATGGGGAATGGG 57.013 50.000 0.00 0.00 0.00 4.00
76 77 2.431997 AGCTTATGATGGGGAATGGGA 58.568 47.619 0.00 0.00 0.00 4.37
77 78 2.791179 AGCTTATGATGGGGAATGGGAA 59.209 45.455 0.00 0.00 0.00 3.97
78 79 3.403737 AGCTTATGATGGGGAATGGGAAT 59.596 43.478 0.00 0.00 0.00 3.01
79 80 4.607584 AGCTTATGATGGGGAATGGGAATA 59.392 41.667 0.00 0.00 0.00 1.75
80 81 4.706962 GCTTATGATGGGGAATGGGAATAC 59.293 45.833 0.00 0.00 0.00 1.89
81 82 3.833559 ATGATGGGGAATGGGAATACC 57.166 47.619 0.00 0.00 40.81 2.73
82 83 1.423541 TGATGGGGAATGGGAATACCG 59.576 52.381 0.00 0.00 44.64 4.02
83 84 1.702957 GATGGGGAATGGGAATACCGA 59.297 52.381 0.00 0.00 44.64 4.69
84 85 1.827792 TGGGGAATGGGAATACCGAT 58.172 50.000 0.00 0.00 44.64 4.18
85 86 2.992967 TGGGGAATGGGAATACCGATA 58.007 47.619 0.00 0.00 44.64 2.92
86 87 2.640826 TGGGGAATGGGAATACCGATAC 59.359 50.000 0.00 0.00 44.64 2.24
87 88 2.640826 GGGGAATGGGAATACCGATACA 59.359 50.000 0.00 0.00 44.64 2.29
88 89 3.558533 GGGGAATGGGAATACCGATACAC 60.559 52.174 0.00 0.00 44.64 2.90
89 90 3.326880 GGGAATGGGAATACCGATACACT 59.673 47.826 0.00 0.00 44.64 3.55
90 91 4.202430 GGGAATGGGAATACCGATACACTT 60.202 45.833 0.00 0.00 44.64 3.16
91 92 4.995487 GGAATGGGAATACCGATACACTTC 59.005 45.833 0.00 0.00 44.64 3.01
92 93 4.618920 ATGGGAATACCGATACACTTCC 57.381 45.455 0.00 0.00 44.64 3.46
93 94 3.376636 TGGGAATACCGATACACTTCCA 58.623 45.455 0.00 0.00 44.64 3.53
94 95 3.133362 TGGGAATACCGATACACTTCCAC 59.867 47.826 0.00 0.00 44.64 4.02
95 96 3.387050 GGGAATACCGATACACTTCCACT 59.613 47.826 0.00 0.00 37.66 4.00
96 97 4.501058 GGGAATACCGATACACTTCCACTC 60.501 50.000 0.00 0.00 37.66 3.51
97 98 4.098960 GGAATACCGATACACTTCCACTCA 59.901 45.833 0.00 0.00 36.28 3.41
98 99 4.650754 ATACCGATACACTTCCACTCAC 57.349 45.455 0.00 0.00 0.00 3.51
99 100 2.526432 ACCGATACACTTCCACTCACT 58.474 47.619 0.00 0.00 0.00 3.41
100 101 3.693807 ACCGATACACTTCCACTCACTA 58.306 45.455 0.00 0.00 0.00 2.74
101 102 4.279145 ACCGATACACTTCCACTCACTAT 58.721 43.478 0.00 0.00 0.00 2.12
102 103 4.338682 ACCGATACACTTCCACTCACTATC 59.661 45.833 0.00 0.00 0.00 2.08
103 104 4.338400 CCGATACACTTCCACTCACTATCA 59.662 45.833 0.00 0.00 0.00 2.15
104 105 5.506483 CCGATACACTTCCACTCACTATCAG 60.506 48.000 0.00 0.00 0.00 2.90
105 106 5.506483 CGATACACTTCCACTCACTATCAGG 60.506 48.000 0.00 0.00 0.00 3.86
106 107 3.511477 ACACTTCCACTCACTATCAGGT 58.489 45.455 0.00 0.00 0.00 4.00
107 108 3.259374 ACACTTCCACTCACTATCAGGTG 59.741 47.826 0.00 0.00 38.44 4.00
108 109 3.259374 CACTTCCACTCACTATCAGGTGT 59.741 47.826 0.00 0.00 38.28 4.16
109 110 3.259374 ACTTCCACTCACTATCAGGTGTG 59.741 47.826 0.00 0.00 38.28 3.82
110 111 2.179427 TCCACTCACTATCAGGTGTGG 58.821 52.381 0.00 0.00 38.28 4.17
111 112 1.406069 CCACTCACTATCAGGTGTGGC 60.406 57.143 0.00 0.00 38.28 5.01
112 113 1.552337 CACTCACTATCAGGTGTGGCT 59.448 52.381 0.00 0.00 38.28 4.75
113 114 2.760650 CACTCACTATCAGGTGTGGCTA 59.239 50.000 0.00 0.00 38.28 3.93
114 115 2.761208 ACTCACTATCAGGTGTGGCTAC 59.239 50.000 0.00 0.00 38.28 3.58
134 135 7.507956 TGGCTACTGGCTAGACTAAAATACATA 59.492 37.037 3.17 0.00 41.46 2.29
157 158 5.837437 AGCGTCTCCTATTTAGATTGTCAG 58.163 41.667 0.00 0.00 0.00 3.51
158 159 4.985409 GCGTCTCCTATTTAGATTGTCAGG 59.015 45.833 0.00 0.00 0.00 3.86
159 160 5.452077 GCGTCTCCTATTTAGATTGTCAGGT 60.452 44.000 0.00 0.00 0.00 4.00
160 161 6.238953 GCGTCTCCTATTTAGATTGTCAGGTA 60.239 42.308 0.00 0.00 0.00 3.08
162 163 8.195436 CGTCTCCTATTTAGATTGTCAGGTAAA 58.805 37.037 0.00 0.00 0.00 2.01
163 164 9.535878 GTCTCCTATTTAGATTGTCAGGTAAAG 57.464 37.037 0.00 0.00 0.00 1.85
164 165 9.268282 TCTCCTATTTAGATTGTCAGGTAAAGT 57.732 33.333 0.00 0.00 0.00 2.66
165 166 9.892130 CTCCTATTTAGATTGTCAGGTAAAGTT 57.108 33.333 0.00 0.00 0.00 2.66
166 167 9.886132 TCCTATTTAGATTGTCAGGTAAAGTTC 57.114 33.333 0.00 0.00 0.00 3.01
167 168 9.892130 CCTATTTAGATTGTCAGGTAAAGTTCT 57.108 33.333 0.00 0.00 0.00 3.01
298 304 1.939381 GCAATTTCGAAGGCCCCAAAC 60.939 52.381 0.00 0.00 0.00 2.93
489 496 1.575244 CGATGATGTCGGCATTGACT 58.425 50.000 2.92 0.00 46.47 3.41
490 497 2.742774 CGATGATGTCGGCATTGACTA 58.257 47.619 2.92 0.00 46.47 2.59
495 502 2.552599 TGTCGGCATTGACTACCAAA 57.447 45.000 0.00 0.00 39.64 3.28
532 539 2.105006 TGCTGGCAAGAGCTAAGAAG 57.895 50.000 0.00 0.00 39.90 2.85
539 546 4.068599 GGCAAGAGCTAAGAAGACTTGTT 58.931 43.478 9.88 2.83 39.08 2.83
695 711 4.072131 TCAGTCTGGTAATTTTGCACTCC 58.928 43.478 0.00 0.00 0.00 3.85
733 751 3.711842 CAGGCGCGCGAAAAGACA 61.712 61.111 37.18 0.00 0.00 3.41
1062 1127 3.357079 CTGCGTCCCAACTGTGGC 61.357 66.667 0.00 0.00 44.46 5.01
1542 1627 2.826128 GGACATATGGCTCGATACCTCA 59.174 50.000 8.85 0.00 0.00 3.86
1597 1710 4.466726 AGGATAGCGACTTGGAGTAGTTTT 59.533 41.667 0.00 0.00 0.00 2.43
1662 1878 6.504398 TCTATCTAGTTGCACCGATGTAAAG 58.496 40.000 0.00 0.00 31.71 1.85
1916 2157 3.243873 CGCCTGTTGGAGATGCTCTTATA 60.244 47.826 0.00 0.00 34.95 0.98
1923 2164 6.494835 TGTTGGAGATGCTCTTATATCAGCTA 59.505 38.462 0.00 0.00 36.53 3.32
1924 2165 6.772360 TGGAGATGCTCTTATATCAGCTAG 57.228 41.667 0.00 0.00 36.53 3.42
1925 2166 6.488715 TGGAGATGCTCTTATATCAGCTAGA 58.511 40.000 0.00 0.00 36.53 2.43
1926 2167 6.950619 TGGAGATGCTCTTATATCAGCTAGAA 59.049 38.462 0.00 0.00 36.53 2.10
1927 2168 7.093988 TGGAGATGCTCTTATATCAGCTAGAAC 60.094 40.741 0.00 0.00 36.53 3.01
1928 2169 7.122650 GGAGATGCTCTTATATCAGCTAGAACT 59.877 40.741 0.00 0.00 36.53 3.01
1929 2170 8.421249 AGATGCTCTTATATCAGCTAGAACTT 57.579 34.615 0.00 0.00 36.53 2.66
1930 2171 8.306038 AGATGCTCTTATATCAGCTAGAACTTG 58.694 37.037 0.00 0.00 36.53 3.16
1931 2172 6.753180 TGCTCTTATATCAGCTAGAACTTGG 58.247 40.000 0.00 0.00 36.53 3.61
1932 2173 5.637387 GCTCTTATATCAGCTAGAACTTGGC 59.363 44.000 0.00 0.00 32.48 4.52
1933 2174 6.731292 TCTTATATCAGCTAGAACTTGGCA 57.269 37.500 0.00 0.00 0.00 4.92
1934 2175 7.124573 TCTTATATCAGCTAGAACTTGGCAA 57.875 36.000 0.00 0.00 0.00 4.52
1935 2176 7.739825 TCTTATATCAGCTAGAACTTGGCAAT 58.260 34.615 0.00 0.00 0.00 3.56
1936 2177 8.213679 TCTTATATCAGCTAGAACTTGGCAATT 58.786 33.333 0.00 0.00 0.00 2.32
1937 2178 8.752005 TTATATCAGCTAGAACTTGGCAATTT 57.248 30.769 0.00 0.22 0.00 1.82
1938 2179 4.771590 TCAGCTAGAACTTGGCAATTTG 57.228 40.909 7.61 0.00 0.00 2.32
1939 2180 4.397420 TCAGCTAGAACTTGGCAATTTGA 58.603 39.130 7.61 0.00 0.00 2.69
1940 2181 4.826733 TCAGCTAGAACTTGGCAATTTGAA 59.173 37.500 7.61 0.00 0.00 2.69
1941 2182 4.919754 CAGCTAGAACTTGGCAATTTGAAC 59.080 41.667 7.61 0.00 0.00 3.18
1942 2183 4.584325 AGCTAGAACTTGGCAATTTGAACA 59.416 37.500 7.61 0.00 0.00 3.18
1943 2184 5.068987 AGCTAGAACTTGGCAATTTGAACAA 59.931 36.000 7.61 3.96 0.00 2.83
1944 2185 5.175673 GCTAGAACTTGGCAATTTGAACAAC 59.824 40.000 7.61 0.00 0.00 3.32
1945 2186 5.343307 AGAACTTGGCAATTTGAACAACT 57.657 34.783 7.61 0.00 0.00 3.16
1946 2187 6.463995 AGAACTTGGCAATTTGAACAACTA 57.536 33.333 7.61 0.00 0.00 2.24
1947 2188 6.872920 AGAACTTGGCAATTTGAACAACTAA 58.127 32.000 7.61 0.00 0.00 2.24
1948 2189 6.756542 AGAACTTGGCAATTTGAACAACTAAC 59.243 34.615 7.61 0.00 0.00 2.34
1949 2190 5.971763 ACTTGGCAATTTGAACAACTAACA 58.028 33.333 0.00 0.00 0.00 2.41
1950 2191 6.581712 ACTTGGCAATTTGAACAACTAACAT 58.418 32.000 0.00 0.00 0.00 2.71
1951 2192 7.721402 ACTTGGCAATTTGAACAACTAACATA 58.279 30.769 0.00 0.00 0.00 2.29
1952 2193 7.867403 ACTTGGCAATTTGAACAACTAACATAG 59.133 33.333 0.00 0.00 0.00 2.23
1953 2194 7.283625 TGGCAATTTGAACAACTAACATAGT 57.716 32.000 0.00 0.00 41.73 2.12
1955 2196 8.200792 TGGCAATTTGAACAACTAACATAGTTT 58.799 29.630 0.00 0.00 46.27 2.66
1956 2197 8.487176 GGCAATTTGAACAACTAACATAGTTTG 58.513 33.333 0.00 0.68 46.27 2.93
1957 2198 8.487176 GCAATTTGAACAACTAACATAGTTTGG 58.513 33.333 0.00 0.00 46.27 3.28
1958 2199 9.743057 CAATTTGAACAACTAACATAGTTTGGA 57.257 29.630 0.15 0.00 46.27 3.53
1960 2201 9.744468 ATTTGAACAACTAACATAGTTTGGAAC 57.256 29.630 0.15 0.00 46.27 3.62
1961 2202 8.514330 TTGAACAACTAACATAGTTTGGAACT 57.486 30.769 0.15 0.00 46.27 3.01
1962 2203 7.925993 TGAACAACTAACATAGTTTGGAACTG 58.074 34.615 3.70 0.00 46.27 3.16
1963 2204 6.877611 ACAACTAACATAGTTTGGAACTGG 57.122 37.500 3.70 0.00 46.27 4.00
1964 2205 6.597562 ACAACTAACATAGTTTGGAACTGGA 58.402 36.000 3.70 0.00 46.27 3.86
1965 2206 7.057894 ACAACTAACATAGTTTGGAACTGGAA 58.942 34.615 3.70 0.00 46.27 3.53
1966 2207 7.558444 ACAACTAACATAGTTTGGAACTGGAAA 59.442 33.333 3.70 0.00 46.27 3.13
1967 2208 7.506328 ACTAACATAGTTTGGAACTGGAAAC 57.494 36.000 3.70 0.00 42.84 2.78
1968 2209 5.432885 AACATAGTTTGGAACTGGAAACG 57.567 39.130 3.70 0.00 42.84 3.60
1969 2210 3.818773 ACATAGTTTGGAACTGGAAACGG 59.181 43.478 3.70 0.00 42.84 4.44
1970 2211 1.687563 AGTTTGGAACTGGAAACGGG 58.312 50.000 0.00 0.00 41.01 5.28
1971 2212 1.064240 AGTTTGGAACTGGAAACGGGT 60.064 47.619 0.00 0.00 41.01 5.28
1972 2213 1.066454 GTTTGGAACTGGAAACGGGTG 59.934 52.381 0.00 0.00 36.09 4.61
1973 2214 0.466555 TTGGAACTGGAAACGGGTGG 60.467 55.000 0.00 0.00 36.09 4.61
1974 2215 1.346479 TGGAACTGGAAACGGGTGGA 61.346 55.000 0.00 0.00 36.09 4.02
1975 2216 0.887836 GGAACTGGAAACGGGTGGAC 60.888 60.000 0.00 0.00 36.09 4.02
1976 2217 0.179040 GAACTGGAAACGGGTGGACA 60.179 55.000 0.00 0.00 36.09 4.02
1977 2218 0.476771 AACTGGAAACGGGTGGACAT 59.523 50.000 0.00 0.00 42.76 3.06
1978 2219 0.036306 ACTGGAAACGGGTGGACATC 59.964 55.000 0.00 0.00 42.76 3.06
1979 2220 1.004320 TGGAAACGGGTGGACATCG 60.004 57.895 0.00 0.00 0.00 3.84
1980 2221 2.396157 GGAAACGGGTGGACATCGC 61.396 63.158 0.00 0.00 0.00 4.58
1981 2222 1.669760 GAAACGGGTGGACATCGCA 60.670 57.895 0.00 0.00 0.00 5.10
1982 2223 1.002624 AAACGGGTGGACATCGCAT 60.003 52.632 0.00 0.00 0.00 4.73
1983 2224 0.250793 AAACGGGTGGACATCGCATA 59.749 50.000 0.00 0.00 0.00 3.14
1984 2225 0.468226 AACGGGTGGACATCGCATAT 59.532 50.000 0.00 0.00 0.00 1.78
1985 2226 0.249868 ACGGGTGGACATCGCATATG 60.250 55.000 0.00 0.00 0.00 1.78
1986 2227 1.568612 CGGGTGGACATCGCATATGC 61.569 60.000 18.08 18.08 37.78 3.14
1987 2228 0.534877 GGGTGGACATCGCATATGCA 60.535 55.000 26.52 14.35 42.21 3.96
1988 2229 0.588252 GGTGGACATCGCATATGCAC 59.412 55.000 26.52 14.81 42.21 4.57
1989 2230 0.588252 GTGGACATCGCATATGCACC 59.412 55.000 26.52 19.14 42.21 5.01
1990 2231 0.179936 TGGACATCGCATATGCACCA 59.820 50.000 26.52 21.11 42.21 4.17
1991 2232 1.202794 TGGACATCGCATATGCACCAT 60.203 47.619 26.52 12.47 42.21 3.55
1992 2233 1.881973 GGACATCGCATATGCACCATT 59.118 47.619 26.52 6.99 42.21 3.16
1993 2234 2.294233 GGACATCGCATATGCACCATTT 59.706 45.455 26.52 8.78 42.21 2.32
1994 2235 3.302555 GACATCGCATATGCACCATTTG 58.697 45.455 26.52 15.25 42.21 2.32
1995 2236 2.689471 ACATCGCATATGCACCATTTGT 59.311 40.909 26.52 15.81 42.21 2.83
1996 2237 3.130869 ACATCGCATATGCACCATTTGTT 59.869 39.130 26.52 1.80 42.21 2.83
1997 2238 3.148026 TCGCATATGCACCATTTGTTG 57.852 42.857 26.52 7.00 42.21 3.33
1998 2239 2.751806 TCGCATATGCACCATTTGTTGA 59.248 40.909 26.52 9.22 42.21 3.18
1999 2240 3.380954 TCGCATATGCACCATTTGTTGAT 59.619 39.130 26.52 0.00 42.21 2.57
2000 2241 3.487942 CGCATATGCACCATTTGTTGATG 59.512 43.478 26.52 2.00 42.21 3.07
2001 2242 5.550858 CGCATATGCACCATTTGTTGATGG 61.551 45.833 26.52 2.48 42.58 3.51
2002 2243 7.674175 CGCATATGCACCATTTGTTGATGGA 62.674 44.000 26.52 0.00 44.25 3.41
2003 2244 8.881747 CGCATATGCACCATTTGTTGATGGAT 62.882 42.308 26.52 0.00 44.25 3.41
2014 2255 8.638685 CATTTGTTGATGGATTCCAAGTATTC 57.361 34.615 9.98 2.85 36.95 1.75
2015 2256 8.472413 CATTTGTTGATGGATTCCAAGTATTCT 58.528 33.333 9.98 0.00 36.95 2.40
2016 2257 8.421249 TTTGTTGATGGATTCCAAGTATTCTT 57.579 30.769 9.98 0.00 36.95 2.52
2017 2258 7.630242 TGTTGATGGATTCCAAGTATTCTTC 57.370 36.000 9.98 0.59 36.95 2.87
2018 2259 6.316140 TGTTGATGGATTCCAAGTATTCTTCG 59.684 38.462 9.98 0.00 36.95 3.79
2019 2260 4.816385 TGATGGATTCCAAGTATTCTTCGC 59.184 41.667 9.98 0.00 36.95 4.70
2020 2261 3.541632 TGGATTCCAAGTATTCTTCGCC 58.458 45.455 1.94 0.00 0.00 5.54
2021 2262 3.054728 TGGATTCCAAGTATTCTTCGCCA 60.055 43.478 1.94 0.00 0.00 5.69
2022 2263 3.945285 GGATTCCAAGTATTCTTCGCCAA 59.055 43.478 0.00 0.00 0.00 4.52
2023 2264 4.201920 GGATTCCAAGTATTCTTCGCCAAC 60.202 45.833 0.00 0.00 0.00 3.77
2024 2265 3.410631 TCCAAGTATTCTTCGCCAACA 57.589 42.857 0.00 0.00 0.00 3.33
2025 2266 3.950397 TCCAAGTATTCTTCGCCAACAT 58.050 40.909 0.00 0.00 0.00 2.71
2026 2267 5.092554 TCCAAGTATTCTTCGCCAACATA 57.907 39.130 0.00 0.00 0.00 2.29
2027 2268 5.492895 TCCAAGTATTCTTCGCCAACATAA 58.507 37.500 0.00 0.00 0.00 1.90
2028 2269 5.941058 TCCAAGTATTCTTCGCCAACATAAA 59.059 36.000 0.00 0.00 0.00 1.40
2029 2270 6.093495 TCCAAGTATTCTTCGCCAACATAAAG 59.907 38.462 0.00 0.00 0.00 1.85
2030 2271 6.093495 CCAAGTATTCTTCGCCAACATAAAGA 59.907 38.462 0.00 0.00 0.00 2.52
2031 2272 7.361713 CCAAGTATTCTTCGCCAACATAAAGAA 60.362 37.037 0.00 0.00 40.78 2.52
2032 2273 7.865706 AGTATTCTTCGCCAACATAAAGAAT 57.134 32.000 12.30 12.30 45.55 2.40
2033 2274 8.281212 AGTATTCTTCGCCAACATAAAGAATT 57.719 30.769 12.75 0.00 42.75 2.17
2034 2275 9.391006 AGTATTCTTCGCCAACATAAAGAATTA 57.609 29.630 12.75 0.52 42.75 1.40
2035 2276 9.434559 GTATTCTTCGCCAACATAAAGAATTAC 57.565 33.333 12.75 7.21 42.75 1.89
2036 2277 6.102006 TCTTCGCCAACATAAAGAATTACG 57.898 37.500 0.00 0.00 0.00 3.18
2037 2278 5.870433 TCTTCGCCAACATAAAGAATTACGA 59.130 36.000 0.00 0.00 0.00 3.43
2038 2279 6.537301 TCTTCGCCAACATAAAGAATTACGAT 59.463 34.615 0.00 0.00 0.00 3.73
2039 2280 7.707464 TCTTCGCCAACATAAAGAATTACGATA 59.293 33.333 0.00 0.00 0.00 2.92
2040 2281 7.169035 TCGCCAACATAAAGAATTACGATAC 57.831 36.000 0.00 0.00 0.00 2.24
2041 2282 6.201425 TCGCCAACATAAAGAATTACGATACC 59.799 38.462 0.00 0.00 0.00 2.73
2042 2283 6.360329 GCCAACATAAAGAATTACGATACCG 58.640 40.000 0.00 0.00 42.50 4.02
2043 2284 6.360329 CCAACATAAAGAATTACGATACCGC 58.640 40.000 0.00 0.00 39.95 5.68
2044 2285 6.360329 CAACATAAAGAATTACGATACCGCC 58.640 40.000 0.00 0.00 39.95 6.13
2045 2286 4.682860 ACATAAAGAATTACGATACCGCCG 59.317 41.667 0.00 0.00 39.95 6.46
2046 2287 1.494824 AAGAATTACGATACCGCCGC 58.505 50.000 0.00 0.00 39.95 6.53
2047 2288 0.386476 AGAATTACGATACCGCCGCA 59.614 50.000 0.00 0.00 39.95 5.69
2048 2289 0.782384 GAATTACGATACCGCCGCAG 59.218 55.000 0.00 0.00 39.95 5.18
2061 2302 4.963878 CGCAGGAAGGCCTAACAT 57.036 55.556 5.16 0.00 44.80 2.71
2062 2303 2.397751 CGCAGGAAGGCCTAACATG 58.602 57.895 5.16 12.97 44.80 3.21
2063 2304 1.718757 CGCAGGAAGGCCTAACATGC 61.719 60.000 27.89 27.89 44.80 4.06
2064 2305 0.680921 GCAGGAAGGCCTAACATGCA 60.681 55.000 30.65 0.00 44.80 3.96
2065 2306 1.386533 CAGGAAGGCCTAACATGCAG 58.613 55.000 5.16 0.00 44.80 4.41
2066 2307 1.065199 CAGGAAGGCCTAACATGCAGA 60.065 52.381 5.16 0.00 44.80 4.26
2067 2308 1.635487 AGGAAGGCCTAACATGCAGAA 59.365 47.619 5.16 0.00 44.74 3.02
2068 2309 2.041620 AGGAAGGCCTAACATGCAGAAA 59.958 45.455 5.16 0.00 44.74 2.52
2069 2310 3.026694 GGAAGGCCTAACATGCAGAAAT 58.973 45.455 5.16 0.00 0.00 2.17
2070 2311 3.448660 GGAAGGCCTAACATGCAGAAATT 59.551 43.478 5.16 0.00 0.00 1.82
2071 2312 4.440663 GGAAGGCCTAACATGCAGAAATTC 60.441 45.833 5.16 0.00 0.00 2.17
2072 2313 3.700538 AGGCCTAACATGCAGAAATTCA 58.299 40.909 1.29 0.00 0.00 2.57
2073 2314 4.284178 AGGCCTAACATGCAGAAATTCAT 58.716 39.130 1.29 0.00 0.00 2.57
2074 2315 4.340381 AGGCCTAACATGCAGAAATTCATC 59.660 41.667 1.29 0.00 0.00 2.92
2075 2316 4.098349 GGCCTAACATGCAGAAATTCATCA 59.902 41.667 0.00 0.00 0.00 3.07
2076 2317 5.394443 GGCCTAACATGCAGAAATTCATCAA 60.394 40.000 0.00 0.00 0.00 2.57
2077 2318 5.747197 GCCTAACATGCAGAAATTCATCAAG 59.253 40.000 0.00 0.00 0.00 3.02
2078 2319 6.270815 CCTAACATGCAGAAATTCATCAAGG 58.729 40.000 0.00 0.00 0.00 3.61
2079 2320 5.733620 AACATGCAGAAATTCATCAAGGT 57.266 34.783 0.00 0.00 0.00 3.50
2080 2321 6.839124 AACATGCAGAAATTCATCAAGGTA 57.161 33.333 0.00 0.00 0.00 3.08
2081 2322 6.446781 ACATGCAGAAATTCATCAAGGTAG 57.553 37.500 0.00 0.00 0.00 3.18
2082 2323 4.970662 TGCAGAAATTCATCAAGGTAGC 57.029 40.909 0.00 0.00 0.00 3.58
2083 2324 4.334552 TGCAGAAATTCATCAAGGTAGCA 58.665 39.130 0.00 0.00 0.00 3.49
2084 2325 4.766373 TGCAGAAATTCATCAAGGTAGCAA 59.234 37.500 0.00 0.00 0.00 3.91
2085 2326 5.106038 TGCAGAAATTCATCAAGGTAGCAAG 60.106 40.000 0.00 0.00 0.00 4.01
2086 2327 5.124457 GCAGAAATTCATCAAGGTAGCAAGA 59.876 40.000 0.00 0.00 0.00 3.02
2087 2328 6.349611 GCAGAAATTCATCAAGGTAGCAAGAA 60.350 38.462 0.00 0.00 0.00 2.52
2088 2329 7.025963 CAGAAATTCATCAAGGTAGCAAGAAC 58.974 38.462 0.00 0.00 0.00 3.01
2089 2330 6.716628 AGAAATTCATCAAGGTAGCAAGAACA 59.283 34.615 0.00 0.00 0.00 3.18
2090 2331 5.886960 ATTCATCAAGGTAGCAAGAACAC 57.113 39.130 0.00 0.00 0.00 3.32
2091 2332 3.325870 TCATCAAGGTAGCAAGAACACG 58.674 45.455 0.00 0.00 0.00 4.49
2092 2333 3.006430 TCATCAAGGTAGCAAGAACACGA 59.994 43.478 0.00 0.00 0.00 4.35
2093 2334 2.750948 TCAAGGTAGCAAGAACACGAC 58.249 47.619 0.00 0.00 0.00 4.34
2094 2335 2.101750 TCAAGGTAGCAAGAACACGACA 59.898 45.455 0.00 0.00 0.00 4.35
2095 2336 3.067106 CAAGGTAGCAAGAACACGACAT 58.933 45.455 0.00 0.00 0.00 3.06
2096 2337 2.960819 AGGTAGCAAGAACACGACATC 58.039 47.619 0.00 0.00 0.00 3.06
2097 2338 2.563179 AGGTAGCAAGAACACGACATCT 59.437 45.455 0.00 0.00 0.00 2.90
2098 2339 3.006967 AGGTAGCAAGAACACGACATCTT 59.993 43.478 0.00 0.00 36.35 2.40
2099 2340 3.746492 GGTAGCAAGAACACGACATCTTT 59.254 43.478 0.00 0.00 33.73 2.52
2100 2341 4.143094 GGTAGCAAGAACACGACATCTTTC 60.143 45.833 0.00 0.00 33.73 2.62
2101 2342 3.466836 AGCAAGAACACGACATCTTTCA 58.533 40.909 0.00 0.00 33.73 2.69
2102 2343 3.496130 AGCAAGAACACGACATCTTTCAG 59.504 43.478 0.00 0.00 33.73 3.02
2103 2344 3.803555 CAAGAACACGACATCTTTCAGC 58.196 45.455 0.00 0.00 33.73 4.26
2104 2345 3.111853 AGAACACGACATCTTTCAGCA 57.888 42.857 0.00 0.00 0.00 4.41
2105 2346 3.062763 AGAACACGACATCTTTCAGCAG 58.937 45.455 0.00 0.00 0.00 4.24
2106 2347 2.533266 ACACGACATCTTTCAGCAGT 57.467 45.000 0.00 0.00 0.00 4.40
2107 2348 2.138320 ACACGACATCTTTCAGCAGTG 58.862 47.619 0.00 0.00 34.85 3.66
2108 2349 2.138320 CACGACATCTTTCAGCAGTGT 58.862 47.619 0.00 0.00 0.00 3.55
2109 2350 3.243737 ACACGACATCTTTCAGCAGTGTA 60.244 43.478 0.00 0.00 39.43 2.90
2110 2351 3.366121 CACGACATCTTTCAGCAGTGTAG 59.634 47.826 0.00 0.00 0.00 2.74
2111 2352 2.346847 CGACATCTTTCAGCAGTGTAGC 59.653 50.000 0.00 0.00 0.00 3.58
2113 2354 3.999663 GACATCTTTCAGCAGTGTAGCTT 59.000 43.478 0.00 0.00 43.70 3.74
2114 2355 4.392940 ACATCTTTCAGCAGTGTAGCTTT 58.607 39.130 0.00 0.00 43.70 3.51
2115 2356 4.823989 ACATCTTTCAGCAGTGTAGCTTTT 59.176 37.500 0.00 0.00 43.70 2.27
2116 2357 4.818534 TCTTTCAGCAGTGTAGCTTTTG 57.181 40.909 0.00 0.00 43.70 2.44
2117 2358 3.565482 TCTTTCAGCAGTGTAGCTTTTGG 59.435 43.478 0.00 0.00 43.70 3.28
2118 2359 2.928801 TCAGCAGTGTAGCTTTTGGA 57.071 45.000 0.00 0.00 43.70 3.53
2119 2360 2.771089 TCAGCAGTGTAGCTTTTGGAG 58.229 47.619 0.00 0.00 43.70 3.86
2136 2377 3.204418 GCTTGGGCTCCATGAAGC 58.796 61.111 0.00 0.00 41.73 3.86
2146 2387 4.762956 GCTCCATGAAGCCTGATATTTC 57.237 45.455 0.00 0.00 36.22 2.17
2147 2388 4.139786 GCTCCATGAAGCCTGATATTTCA 58.860 43.478 0.00 0.00 36.22 2.69
2148 2389 4.581824 GCTCCATGAAGCCTGATATTTCAA 59.418 41.667 0.00 0.00 36.22 2.69
2149 2390 5.243283 GCTCCATGAAGCCTGATATTTCAAT 59.757 40.000 0.00 0.00 36.22 2.57
2150 2391 6.432162 GCTCCATGAAGCCTGATATTTCAATA 59.568 38.462 0.00 0.00 36.22 1.90
2151 2392 7.122353 GCTCCATGAAGCCTGATATTTCAATAT 59.878 37.037 0.00 0.00 36.22 1.28
2152 2393 8.945195 TCCATGAAGCCTGATATTTCAATATT 57.055 30.769 0.00 0.00 34.80 1.28
2153 2394 9.017509 TCCATGAAGCCTGATATTTCAATATTC 57.982 33.333 0.00 0.00 34.80 1.75
2154 2395 8.799367 CCATGAAGCCTGATATTTCAATATTCA 58.201 33.333 0.00 8.16 34.80 2.57
2157 2398 9.412460 TGAAGCCTGATATTTCAATATTCAACT 57.588 29.630 0.00 0.00 31.96 3.16
2384 2626 8.117813 TGTACAAACATGTAGAGTACATCTCA 57.882 34.615 23.27 9.55 45.83 3.27
2555 2797 3.768215 TGTAGGAAATGAATGGCATTGCA 59.232 39.130 19.07 15.03 46.25 4.08
2563 2805 1.066002 GAATGGCATTGCAGCGTATGT 59.934 47.619 19.07 0.00 34.64 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.007724 CGGTTTAAGAAGAAACTGAGTTGCT 59.992 40.000 0.00 0.00 44.96 3.91
1 2 5.007332 TCGGTTTAAGAAGAAACTGAGTTGC 59.993 40.000 0.00 0.00 45.47 4.17
7 8 6.410243 GAGGATCGGTTTAAGAAGAAACTG 57.590 41.667 2.13 2.13 43.98 3.16
24 25 3.632604 TGAGTGGAAGTGTATCGAGGATC 59.367 47.826 0.00 0.00 0.00 3.36
25 26 3.381908 GTGAGTGGAAGTGTATCGAGGAT 59.618 47.826 0.00 0.00 0.00 3.24
26 27 2.753452 GTGAGTGGAAGTGTATCGAGGA 59.247 50.000 0.00 0.00 0.00 3.71
27 28 2.755655 AGTGAGTGGAAGTGTATCGAGG 59.244 50.000 0.00 0.00 0.00 4.63
28 29 5.759506 ATAGTGAGTGGAAGTGTATCGAG 57.240 43.478 0.00 0.00 0.00 4.04
29 30 6.071560 ACAAATAGTGAGTGGAAGTGTATCGA 60.072 38.462 0.00 0.00 0.00 3.59
30 31 6.100004 ACAAATAGTGAGTGGAAGTGTATCG 58.900 40.000 0.00 0.00 0.00 2.92
31 32 7.907214 AACAAATAGTGAGTGGAAGTGTATC 57.093 36.000 0.00 0.00 0.00 2.24
32 33 7.549488 GCTAACAAATAGTGAGTGGAAGTGTAT 59.451 37.037 0.00 0.00 33.87 2.29
33 34 6.872020 GCTAACAAATAGTGAGTGGAAGTGTA 59.128 38.462 0.00 0.00 33.87 2.90
34 35 5.701290 GCTAACAAATAGTGAGTGGAAGTGT 59.299 40.000 0.00 0.00 33.87 3.55
35 36 5.934625 AGCTAACAAATAGTGAGTGGAAGTG 59.065 40.000 0.00 0.00 33.87 3.16
36 37 6.115448 AGCTAACAAATAGTGAGTGGAAGT 57.885 37.500 0.00 0.00 33.87 3.01
37 38 8.607459 CATAAGCTAACAAATAGTGAGTGGAAG 58.393 37.037 0.00 0.00 33.87 3.46
38 39 8.318412 TCATAAGCTAACAAATAGTGAGTGGAA 58.682 33.333 0.00 0.00 33.87 3.53
39 40 7.847096 TCATAAGCTAACAAATAGTGAGTGGA 58.153 34.615 0.00 0.00 33.87 4.02
40 41 8.554528 CATCATAAGCTAACAAATAGTGAGTGG 58.445 37.037 0.00 0.00 33.87 4.00
41 42 8.554528 CCATCATAAGCTAACAAATAGTGAGTG 58.445 37.037 0.00 0.00 33.87 3.51
42 43 7.716998 CCCATCATAAGCTAACAAATAGTGAGT 59.283 37.037 0.00 0.00 33.87 3.41
43 44 7.173907 CCCCATCATAAGCTAACAAATAGTGAG 59.826 40.741 0.00 0.00 33.87 3.51
44 45 6.998074 CCCCATCATAAGCTAACAAATAGTGA 59.002 38.462 0.00 0.00 33.87 3.41
45 46 6.998074 TCCCCATCATAAGCTAACAAATAGTG 59.002 38.462 0.00 0.00 33.87 2.74
46 47 7.149202 TCCCCATCATAAGCTAACAAATAGT 57.851 36.000 0.00 0.00 33.87 2.12
47 48 8.517878 CATTCCCCATCATAAGCTAACAAATAG 58.482 37.037 0.00 0.00 34.52 1.73
48 49 7.451255 CCATTCCCCATCATAAGCTAACAAATA 59.549 37.037 0.00 0.00 0.00 1.40
49 50 6.268387 CCATTCCCCATCATAAGCTAACAAAT 59.732 38.462 0.00 0.00 0.00 2.32
50 51 5.598005 CCATTCCCCATCATAAGCTAACAAA 59.402 40.000 0.00 0.00 0.00 2.83
51 52 5.139727 CCATTCCCCATCATAAGCTAACAA 58.860 41.667 0.00 0.00 0.00 2.83
52 53 4.447616 CCCATTCCCCATCATAAGCTAACA 60.448 45.833 0.00 0.00 0.00 2.41
53 54 4.082125 CCCATTCCCCATCATAAGCTAAC 58.918 47.826 0.00 0.00 0.00 2.34
54 55 3.986817 TCCCATTCCCCATCATAAGCTAA 59.013 43.478 0.00 0.00 0.00 3.09
55 56 3.608067 TCCCATTCCCCATCATAAGCTA 58.392 45.455 0.00 0.00 0.00 3.32
56 57 2.431997 TCCCATTCCCCATCATAAGCT 58.568 47.619 0.00 0.00 0.00 3.74
57 58 2.978156 TCCCATTCCCCATCATAAGC 57.022 50.000 0.00 0.00 0.00 3.09
58 59 5.264395 GGTATTCCCATTCCCCATCATAAG 58.736 45.833 0.00 0.00 0.00 1.73
59 60 4.263727 CGGTATTCCCATTCCCCATCATAA 60.264 45.833 0.00 0.00 0.00 1.90
60 61 3.265737 CGGTATTCCCATTCCCCATCATA 59.734 47.826 0.00 0.00 0.00 2.15
61 62 2.041620 CGGTATTCCCATTCCCCATCAT 59.958 50.000 0.00 0.00 0.00 2.45
62 63 1.423541 CGGTATTCCCATTCCCCATCA 59.576 52.381 0.00 0.00 0.00 3.07
63 64 1.702957 TCGGTATTCCCATTCCCCATC 59.297 52.381 0.00 0.00 0.00 3.51
64 65 1.827792 TCGGTATTCCCATTCCCCAT 58.172 50.000 0.00 0.00 0.00 4.00
65 66 1.827792 ATCGGTATTCCCATTCCCCA 58.172 50.000 0.00 0.00 0.00 4.96
66 67 2.640826 TGTATCGGTATTCCCATTCCCC 59.359 50.000 0.00 0.00 0.00 4.81
67 68 3.326880 AGTGTATCGGTATTCCCATTCCC 59.673 47.826 0.00 0.00 0.00 3.97
68 69 4.618920 AGTGTATCGGTATTCCCATTCC 57.381 45.455 0.00 0.00 0.00 3.01
69 70 4.995487 GGAAGTGTATCGGTATTCCCATTC 59.005 45.833 0.00 0.00 34.58 2.67
70 71 4.410883 TGGAAGTGTATCGGTATTCCCATT 59.589 41.667 4.49 0.00 38.93 3.16
71 72 3.971305 TGGAAGTGTATCGGTATTCCCAT 59.029 43.478 4.49 0.00 38.93 4.00
72 73 3.133362 GTGGAAGTGTATCGGTATTCCCA 59.867 47.826 4.49 0.00 38.93 4.37
73 74 3.387050 AGTGGAAGTGTATCGGTATTCCC 59.613 47.826 4.49 0.00 38.93 3.97
74 75 4.098960 TGAGTGGAAGTGTATCGGTATTCC 59.901 45.833 0.37 0.37 39.90 3.01
75 76 5.041940 GTGAGTGGAAGTGTATCGGTATTC 58.958 45.833 0.00 0.00 0.00 1.75
76 77 4.710375 AGTGAGTGGAAGTGTATCGGTATT 59.290 41.667 0.00 0.00 0.00 1.89
77 78 4.279145 AGTGAGTGGAAGTGTATCGGTAT 58.721 43.478 0.00 0.00 0.00 2.73
78 79 3.693807 AGTGAGTGGAAGTGTATCGGTA 58.306 45.455 0.00 0.00 0.00 4.02
79 80 2.526432 AGTGAGTGGAAGTGTATCGGT 58.474 47.619 0.00 0.00 0.00 4.69
80 81 4.338400 TGATAGTGAGTGGAAGTGTATCGG 59.662 45.833 0.00 0.00 0.00 4.18
81 82 5.500645 TGATAGTGAGTGGAAGTGTATCG 57.499 43.478 0.00 0.00 0.00 2.92
82 83 5.361285 ACCTGATAGTGAGTGGAAGTGTATC 59.639 44.000 0.00 0.00 0.00 2.24
83 84 5.127845 CACCTGATAGTGAGTGGAAGTGTAT 59.872 44.000 0.00 0.00 40.34 2.29
84 85 4.462834 CACCTGATAGTGAGTGGAAGTGTA 59.537 45.833 0.00 0.00 40.34 2.90
85 86 3.259374 CACCTGATAGTGAGTGGAAGTGT 59.741 47.826 0.00 0.00 40.34 3.55
86 87 3.259374 ACACCTGATAGTGAGTGGAAGTG 59.741 47.826 0.00 0.00 40.34 3.16
87 88 3.259374 CACACCTGATAGTGAGTGGAAGT 59.741 47.826 0.00 0.00 40.34 3.01
88 89 3.368843 CCACACCTGATAGTGAGTGGAAG 60.369 52.174 3.42 0.00 40.34 3.46
89 90 2.567169 CCACACCTGATAGTGAGTGGAA 59.433 50.000 3.42 0.00 40.34 3.53
90 91 2.179427 CCACACCTGATAGTGAGTGGA 58.821 52.381 3.42 0.00 40.34 4.02
91 92 1.406069 GCCACACCTGATAGTGAGTGG 60.406 57.143 0.00 0.00 40.34 4.00
92 93 1.552337 AGCCACACCTGATAGTGAGTG 59.448 52.381 0.00 0.00 40.34 3.51
93 94 1.944177 AGCCACACCTGATAGTGAGT 58.056 50.000 0.00 0.00 40.34 3.41
94 95 3.027412 AGTAGCCACACCTGATAGTGAG 58.973 50.000 0.00 0.00 40.34 3.51
95 96 2.760650 CAGTAGCCACACCTGATAGTGA 59.239 50.000 0.00 0.00 40.34 3.41
96 97 2.159043 CCAGTAGCCACACCTGATAGTG 60.159 54.545 0.00 0.00 43.65 2.74
97 98 2.111384 CCAGTAGCCACACCTGATAGT 58.889 52.381 0.00 0.00 0.00 2.12
98 99 1.202580 GCCAGTAGCCACACCTGATAG 60.203 57.143 0.00 0.00 34.35 2.08
99 100 0.830648 GCCAGTAGCCACACCTGATA 59.169 55.000 0.00 0.00 34.35 2.15
100 101 0.911525 AGCCAGTAGCCACACCTGAT 60.912 55.000 0.00 0.00 45.47 2.90
101 102 0.252057 TAGCCAGTAGCCACACCTGA 60.252 55.000 0.00 0.00 45.47 3.86
102 103 0.176680 CTAGCCAGTAGCCACACCTG 59.823 60.000 0.00 0.00 45.47 4.00
103 104 0.041238 TCTAGCCAGTAGCCACACCT 59.959 55.000 0.00 0.00 45.47 4.00
104 105 0.175989 GTCTAGCCAGTAGCCACACC 59.824 60.000 0.00 0.00 45.47 4.16
105 106 1.187087 AGTCTAGCCAGTAGCCACAC 58.813 55.000 0.00 0.00 45.47 3.82
106 107 2.820728 TAGTCTAGCCAGTAGCCACA 57.179 50.000 0.00 0.00 45.47 4.17
107 108 4.467198 TTTTAGTCTAGCCAGTAGCCAC 57.533 45.455 0.00 0.00 45.47 5.01
108 109 5.659525 TGTATTTTAGTCTAGCCAGTAGCCA 59.340 40.000 0.00 0.00 45.47 4.75
109 110 6.158023 TGTATTTTAGTCTAGCCAGTAGCC 57.842 41.667 0.00 0.00 45.47 3.93
110 111 7.542824 GCTATGTATTTTAGTCTAGCCAGTAGC 59.457 40.741 0.00 0.00 44.25 3.58
111 112 7.751348 CGCTATGTATTTTAGTCTAGCCAGTAG 59.249 40.741 0.00 0.00 0.00 2.57
112 113 7.230108 ACGCTATGTATTTTAGTCTAGCCAGTA 59.770 37.037 0.00 0.00 0.00 2.74
113 114 6.040616 ACGCTATGTATTTTAGTCTAGCCAGT 59.959 38.462 0.00 0.00 0.00 4.00
114 115 6.448006 ACGCTATGTATTTTAGTCTAGCCAG 58.552 40.000 0.00 0.00 0.00 4.85
134 135 5.221342 CCTGACAATCTAAATAGGAGACGCT 60.221 44.000 0.00 0.00 0.00 5.07
157 158 8.771766 ACACTCGATAAGAAAAAGAACTTTACC 58.228 33.333 0.14 0.00 31.63 2.85
162 163 9.760077 TCTTAACACTCGATAAGAAAAAGAACT 57.240 29.630 4.17 0.00 34.59 3.01
165 166 9.706691 ACATCTTAACACTCGATAAGAAAAAGA 57.293 29.630 9.60 3.63 39.22 2.52
169 170 9.706691 AGAAACATCTTAACACTCGATAAGAAA 57.293 29.630 9.60 0.00 39.22 2.52
170 171 9.706691 AAGAAACATCTTAACACTCGATAAGAA 57.293 29.630 9.60 0.00 39.22 2.52
193 197 3.244318 GGTACCTTGTCGGAGGAAAAAGA 60.244 47.826 4.06 0.00 39.25 2.52
298 304 3.949842 TGAACTCACATCAGGACTCAG 57.050 47.619 0.00 0.00 0.00 3.35
402 409 3.004752 TGCTTTTCAGGATCCTAAGGC 57.995 47.619 19.57 19.57 0.00 4.35
489 496 0.400213 CAGTCACTGCCCCTTTGGTA 59.600 55.000 0.00 0.00 36.04 3.25
490 497 1.151450 CAGTCACTGCCCCTTTGGT 59.849 57.895 0.00 0.00 36.04 3.67
695 711 1.403814 TGGAGATGCTCTAAGGGACG 58.596 55.000 0.00 0.00 0.00 4.79
749 769 3.487202 CGCGCGCTAAAAGCTGGA 61.487 61.111 30.48 0.00 39.60 3.86
937 993 1.599576 GTGGCAGAGGAGGAGGAAC 59.400 63.158 0.00 0.00 0.00 3.62
1050 1115 2.176889 GAGTAGTAGCCACAGTTGGGA 58.823 52.381 0.00 0.00 44.15 4.37
1062 1127 2.995258 GGAGCGTATCTCGGAGTAGTAG 59.005 54.545 4.69 0.00 42.82 2.57
1177 1261 2.681976 CGTCCTGGAAATTCATCTGCCT 60.682 50.000 0.00 0.00 0.00 4.75
1237 1321 0.388134 TCTGCCGTGTTAAGACGAGC 60.388 55.000 25.04 23.62 42.10 5.03
1316 1400 3.338250 GCCACTCCCCCATGACCA 61.338 66.667 0.00 0.00 0.00 4.02
1360 1444 0.811616 GCCCAGTAGGATTGCTCGTG 60.812 60.000 0.00 0.00 38.24 4.35
1460 1544 0.529773 TGCTGCAACGATATCCGACC 60.530 55.000 0.00 0.00 41.76 4.79
1542 1627 0.725686 CATACTCGTCGGTGTCGTCT 59.274 55.000 0.00 0.00 37.69 4.18
1597 1710 5.808042 AAACTACGACGCAACTAGATAGA 57.192 39.130 0.00 0.00 0.00 1.98
1916 2157 5.012239 TCAAATTGCCAAGTTCTAGCTGAT 58.988 37.500 0.00 0.00 0.00 2.90
1923 2164 5.343307 AGTTGTTCAAATTGCCAAGTTCT 57.657 34.783 0.00 0.00 0.00 3.01
1924 2165 6.533367 TGTTAGTTGTTCAAATTGCCAAGTTC 59.467 34.615 9.61 6.19 0.00 3.01
1925 2166 6.402222 TGTTAGTTGTTCAAATTGCCAAGTT 58.598 32.000 9.61 0.00 0.00 2.66
1926 2167 5.971763 TGTTAGTTGTTCAAATTGCCAAGT 58.028 33.333 9.38 9.38 0.00 3.16
1927 2168 7.867403 ACTATGTTAGTTGTTCAAATTGCCAAG 59.133 33.333 0.00 0.00 34.86 3.61
1928 2169 7.721402 ACTATGTTAGTTGTTCAAATTGCCAA 58.279 30.769 0.00 0.00 34.86 4.52
1929 2170 7.283625 ACTATGTTAGTTGTTCAAATTGCCA 57.716 32.000 0.00 0.00 34.86 4.92
1943 2184 6.204108 CGTTTCCAGTTCCAAACTATGTTAGT 59.796 38.462 0.00 0.00 40.46 2.24
1944 2185 6.348213 CCGTTTCCAGTTCCAAACTATGTTAG 60.348 42.308 0.00 0.00 40.46 2.34
1945 2186 5.470777 CCGTTTCCAGTTCCAAACTATGTTA 59.529 40.000 0.00 0.00 40.46 2.41
1946 2187 4.277423 CCGTTTCCAGTTCCAAACTATGTT 59.723 41.667 0.00 0.00 40.46 2.71
1947 2188 3.818773 CCGTTTCCAGTTCCAAACTATGT 59.181 43.478 0.00 0.00 40.46 2.29
1948 2189 3.190535 CCCGTTTCCAGTTCCAAACTATG 59.809 47.826 0.00 0.00 40.46 2.23
1949 2190 3.181437 ACCCGTTTCCAGTTCCAAACTAT 60.181 43.478 0.00 0.00 40.46 2.12
1950 2191 2.173143 ACCCGTTTCCAGTTCCAAACTA 59.827 45.455 0.00 0.00 40.46 2.24
1951 2192 1.064240 ACCCGTTTCCAGTTCCAAACT 60.064 47.619 0.00 0.00 44.06 2.66
1952 2193 1.066454 CACCCGTTTCCAGTTCCAAAC 59.934 52.381 0.00 0.00 0.00 2.93
1953 2194 1.394618 CACCCGTTTCCAGTTCCAAA 58.605 50.000 0.00 0.00 0.00 3.28
1954 2195 0.466555 CCACCCGTTTCCAGTTCCAA 60.467 55.000 0.00 0.00 0.00 3.53
1955 2196 1.149627 CCACCCGTTTCCAGTTCCA 59.850 57.895 0.00 0.00 0.00 3.53
1956 2197 0.887836 GTCCACCCGTTTCCAGTTCC 60.888 60.000 0.00 0.00 0.00 3.62
1957 2198 0.179040 TGTCCACCCGTTTCCAGTTC 60.179 55.000 0.00 0.00 0.00 3.01
1958 2199 0.476771 ATGTCCACCCGTTTCCAGTT 59.523 50.000 0.00 0.00 0.00 3.16
1959 2200 0.036306 GATGTCCACCCGTTTCCAGT 59.964 55.000 0.00 0.00 0.00 4.00
1960 2201 1.019278 CGATGTCCACCCGTTTCCAG 61.019 60.000 0.00 0.00 0.00 3.86
1961 2202 1.004320 CGATGTCCACCCGTTTCCA 60.004 57.895 0.00 0.00 0.00 3.53
1962 2203 2.396157 GCGATGTCCACCCGTTTCC 61.396 63.158 0.00 0.00 0.00 3.13
1963 2204 1.024579 ATGCGATGTCCACCCGTTTC 61.025 55.000 0.00 0.00 0.00 2.78
1964 2205 0.250793 TATGCGATGTCCACCCGTTT 59.749 50.000 0.00 0.00 0.00 3.60
1965 2206 0.468226 ATATGCGATGTCCACCCGTT 59.532 50.000 0.00 0.00 0.00 4.44
1966 2207 0.249868 CATATGCGATGTCCACCCGT 60.250 55.000 0.00 0.00 0.00 5.28
1967 2208 1.568612 GCATATGCGATGTCCACCCG 61.569 60.000 12.82 0.00 0.00 5.28
1968 2209 0.534877 TGCATATGCGATGTCCACCC 60.535 55.000 22.21 0.00 45.83 4.61
1969 2210 0.588252 GTGCATATGCGATGTCCACC 59.412 55.000 22.21 0.00 45.83 4.61
1970 2211 0.588252 GGTGCATATGCGATGTCCAC 59.412 55.000 22.21 12.59 45.83 4.02
1971 2212 0.179936 TGGTGCATATGCGATGTCCA 59.820 50.000 22.21 19.53 45.83 4.02
1972 2213 1.527034 ATGGTGCATATGCGATGTCC 58.473 50.000 22.21 17.53 45.83 4.02
1973 2214 3.243168 ACAAATGGTGCATATGCGATGTC 60.243 43.478 22.21 10.18 45.83 3.06
1974 2215 2.689471 ACAAATGGTGCATATGCGATGT 59.311 40.909 22.21 15.95 45.83 3.06
1975 2216 3.358707 ACAAATGGTGCATATGCGATG 57.641 42.857 22.21 15.39 45.83 3.84
1976 2217 3.380954 TCAACAAATGGTGCATATGCGAT 59.619 39.130 22.21 11.40 45.83 4.58
1977 2218 2.751806 TCAACAAATGGTGCATATGCGA 59.248 40.909 22.21 9.55 45.83 5.10
1978 2219 3.148026 TCAACAAATGGTGCATATGCG 57.852 42.857 22.21 8.88 45.83 4.73
1979 2220 3.805422 CCATCAACAAATGGTGCATATGC 59.195 43.478 21.09 21.09 41.18 3.14
1980 2221 5.265350 TCCATCAACAAATGGTGCATATG 57.735 39.130 0.00 0.00 45.46 1.78
1981 2222 6.463331 GGAATCCATCAACAAATGGTGCATAT 60.463 38.462 0.00 0.00 45.46 1.78
1982 2223 5.163426 GGAATCCATCAACAAATGGTGCATA 60.163 40.000 0.00 0.00 45.46 3.14
1983 2224 4.383335 GGAATCCATCAACAAATGGTGCAT 60.383 41.667 0.00 0.00 45.46 3.96
1984 2225 3.055963 GGAATCCATCAACAAATGGTGCA 60.056 43.478 0.00 0.00 45.46 4.57
1985 2226 3.055963 TGGAATCCATCAACAAATGGTGC 60.056 43.478 0.00 0.00 45.46 5.01
1986 2227 4.804868 TGGAATCCATCAACAAATGGTG 57.195 40.909 0.00 0.00 45.46 4.17
1987 2228 4.840115 ACTTGGAATCCATCAACAAATGGT 59.160 37.500 1.39 0.00 45.46 3.55
1988 2229 5.410355 ACTTGGAATCCATCAACAAATGG 57.590 39.130 1.39 0.00 46.44 3.16
1989 2230 8.472413 AGAATACTTGGAATCCATCAACAAATG 58.528 33.333 1.39 0.00 31.53 2.32
1990 2231 8.599624 AGAATACTTGGAATCCATCAACAAAT 57.400 30.769 1.39 0.00 31.53 2.32
1991 2232 8.421249 AAGAATACTTGGAATCCATCAACAAA 57.579 30.769 1.39 0.00 34.80 2.83
1992 2233 7.148255 CGAAGAATACTTGGAATCCATCAACAA 60.148 37.037 1.39 0.00 36.39 2.83
1993 2234 6.316140 CGAAGAATACTTGGAATCCATCAACA 59.684 38.462 1.39 0.00 36.39 3.33
1994 2235 6.719365 CGAAGAATACTTGGAATCCATCAAC 58.281 40.000 1.39 0.00 36.39 3.18
1995 2236 5.296780 GCGAAGAATACTTGGAATCCATCAA 59.703 40.000 1.39 0.00 36.39 2.57
1996 2237 4.816385 GCGAAGAATACTTGGAATCCATCA 59.184 41.667 1.39 0.00 36.39 3.07
1997 2238 4.214332 GGCGAAGAATACTTGGAATCCATC 59.786 45.833 1.39 0.00 36.39 3.51
1998 2239 4.137543 GGCGAAGAATACTTGGAATCCAT 58.862 43.478 1.39 0.00 36.39 3.41
1999 2240 3.054728 TGGCGAAGAATACTTGGAATCCA 60.055 43.478 0.00 0.00 36.39 3.41
2000 2241 3.541632 TGGCGAAGAATACTTGGAATCC 58.458 45.455 0.00 0.00 36.39 3.01
2001 2242 4.394920 TGTTGGCGAAGAATACTTGGAATC 59.605 41.667 0.00 0.00 36.39 2.52
2002 2243 4.331968 TGTTGGCGAAGAATACTTGGAAT 58.668 39.130 0.00 0.00 36.39 3.01
2003 2244 3.745799 TGTTGGCGAAGAATACTTGGAA 58.254 40.909 0.00 0.00 36.39 3.53
2004 2245 3.410631 TGTTGGCGAAGAATACTTGGA 57.589 42.857 0.00 0.00 36.39 3.53
2005 2246 5.811399 TTATGTTGGCGAAGAATACTTGG 57.189 39.130 0.00 0.00 36.39 3.61
2006 2247 7.072177 TCTTTATGTTGGCGAAGAATACTTG 57.928 36.000 0.00 0.00 36.39 3.16
2007 2248 7.681939 TTCTTTATGTTGGCGAAGAATACTT 57.318 32.000 0.00 0.00 39.24 2.24
2008 2249 7.865706 ATTCTTTATGTTGGCGAAGAATACT 57.134 32.000 8.05 0.00 43.35 2.12
2009 2250 9.434559 GTAATTCTTTATGTTGGCGAAGAATAC 57.565 33.333 9.73 6.25 43.99 1.89
2010 2251 8.332464 CGTAATTCTTTATGTTGGCGAAGAATA 58.668 33.333 9.73 0.00 43.99 1.75
2011 2252 7.065324 TCGTAATTCTTTATGTTGGCGAAGAAT 59.935 33.333 4.78 4.78 45.66 2.40
2012 2253 6.369340 TCGTAATTCTTTATGTTGGCGAAGAA 59.631 34.615 0.00 0.00 40.96 2.52
2013 2254 5.870433 TCGTAATTCTTTATGTTGGCGAAGA 59.130 36.000 0.00 0.00 0.00 2.87
2014 2255 6.102006 TCGTAATTCTTTATGTTGGCGAAG 57.898 37.500 0.00 0.00 0.00 3.79
2015 2256 6.671614 ATCGTAATTCTTTATGTTGGCGAA 57.328 33.333 0.00 0.00 0.00 4.70
2016 2257 6.201425 GGTATCGTAATTCTTTATGTTGGCGA 59.799 38.462 0.00 0.00 0.00 5.54
2017 2258 6.360329 GGTATCGTAATTCTTTATGTTGGCG 58.640 40.000 0.00 0.00 0.00 5.69
2018 2259 6.360329 CGGTATCGTAATTCTTTATGTTGGC 58.640 40.000 0.00 0.00 0.00 4.52
2019 2260 6.360329 GCGGTATCGTAATTCTTTATGTTGG 58.640 40.000 0.00 0.00 38.89 3.77
2020 2261 6.360329 GGCGGTATCGTAATTCTTTATGTTG 58.640 40.000 0.00 0.00 38.89 3.33
2021 2262 5.176223 CGGCGGTATCGTAATTCTTTATGTT 59.824 40.000 0.00 0.00 38.89 2.71
2022 2263 4.682860 CGGCGGTATCGTAATTCTTTATGT 59.317 41.667 0.00 0.00 38.89 2.29
2023 2264 4.433805 GCGGCGGTATCGTAATTCTTTATG 60.434 45.833 9.78 0.00 38.89 1.90
2024 2265 3.676646 GCGGCGGTATCGTAATTCTTTAT 59.323 43.478 9.78 0.00 38.89 1.40
2025 2266 3.052036 GCGGCGGTATCGTAATTCTTTA 58.948 45.455 9.78 0.00 38.89 1.85
2026 2267 1.862827 GCGGCGGTATCGTAATTCTTT 59.137 47.619 9.78 0.00 38.89 2.52
2027 2268 1.202440 TGCGGCGGTATCGTAATTCTT 60.202 47.619 9.78 0.00 38.89 2.52
2028 2269 0.386476 TGCGGCGGTATCGTAATTCT 59.614 50.000 9.78 0.00 38.89 2.40
2029 2270 0.782384 CTGCGGCGGTATCGTAATTC 59.218 55.000 9.78 0.00 38.89 2.17
2030 2271 0.599204 CCTGCGGCGGTATCGTAATT 60.599 55.000 9.78 0.00 38.89 1.40
2031 2272 1.006571 CCTGCGGCGGTATCGTAAT 60.007 57.895 9.78 0.00 38.89 1.89
2032 2273 1.665264 TTCCTGCGGCGGTATCGTAA 61.665 55.000 9.78 0.00 38.89 3.18
2033 2274 2.067091 CTTCCTGCGGCGGTATCGTA 62.067 60.000 9.78 0.00 38.89 3.43
2034 2275 3.426117 CTTCCTGCGGCGGTATCGT 62.426 63.158 9.78 0.00 38.89 3.73
2035 2276 2.658593 CTTCCTGCGGCGGTATCG 60.659 66.667 9.78 0.00 39.81 2.92
2036 2277 2.280186 CCTTCCTGCGGCGGTATC 60.280 66.667 9.78 0.00 0.00 2.24
2037 2278 4.547367 GCCTTCCTGCGGCGGTAT 62.547 66.667 9.78 0.00 37.87 2.73
2042 2283 2.824489 GTTAGGCCTTCCTGCGGC 60.824 66.667 12.58 0.00 44.08 6.53
2043 2284 1.097547 CATGTTAGGCCTTCCTGCGG 61.098 60.000 12.58 0.00 44.08 5.69
2044 2285 1.718757 GCATGTTAGGCCTTCCTGCG 61.719 60.000 12.58 0.00 44.08 5.18
2045 2286 0.680921 TGCATGTTAGGCCTTCCTGC 60.681 55.000 12.58 18.99 44.08 4.85
2046 2287 1.065199 TCTGCATGTTAGGCCTTCCTG 60.065 52.381 12.58 9.46 44.08 3.86
2047 2288 1.289160 TCTGCATGTTAGGCCTTCCT 58.711 50.000 12.58 0.00 46.57 3.36
2048 2289 2.128771 TTCTGCATGTTAGGCCTTCC 57.871 50.000 12.58 1.67 0.00 3.46
2049 2290 4.158394 TGAATTTCTGCATGTTAGGCCTTC 59.842 41.667 12.58 5.51 0.00 3.46
2050 2291 4.088634 TGAATTTCTGCATGTTAGGCCTT 58.911 39.130 12.58 0.00 0.00 4.35
2051 2292 3.700538 TGAATTTCTGCATGTTAGGCCT 58.299 40.909 11.78 11.78 0.00 5.19
2052 2293 4.098349 TGATGAATTTCTGCATGTTAGGCC 59.902 41.667 0.00 0.00 0.00 5.19
2053 2294 5.252969 TGATGAATTTCTGCATGTTAGGC 57.747 39.130 0.00 0.00 0.00 3.93
2054 2295 6.127535 ACCTTGATGAATTTCTGCATGTTAGG 60.128 38.462 0.00 0.00 0.00 2.69
2055 2296 6.860080 ACCTTGATGAATTTCTGCATGTTAG 58.140 36.000 0.00 0.00 0.00 2.34
2056 2297 6.839124 ACCTTGATGAATTTCTGCATGTTA 57.161 33.333 0.00 0.00 0.00 2.41
2057 2298 5.733620 ACCTTGATGAATTTCTGCATGTT 57.266 34.783 0.00 0.00 0.00 2.71
2058 2299 5.163581 GCTACCTTGATGAATTTCTGCATGT 60.164 40.000 0.00 0.81 0.00 3.21
2059 2300 5.163591 TGCTACCTTGATGAATTTCTGCATG 60.164 40.000 0.00 0.00 0.00 4.06
2060 2301 4.951715 TGCTACCTTGATGAATTTCTGCAT 59.048 37.500 0.00 0.00 0.00 3.96
2061 2302 4.334552 TGCTACCTTGATGAATTTCTGCA 58.665 39.130 0.00 0.00 0.00 4.41
2062 2303 4.970662 TGCTACCTTGATGAATTTCTGC 57.029 40.909 0.00 0.00 0.00 4.26
2063 2304 6.748333 TCTTGCTACCTTGATGAATTTCTG 57.252 37.500 0.00 0.00 0.00 3.02
2064 2305 6.716628 TGTTCTTGCTACCTTGATGAATTTCT 59.283 34.615 0.00 0.00 0.00 2.52
2065 2306 6.803807 GTGTTCTTGCTACCTTGATGAATTTC 59.196 38.462 0.00 0.00 0.00 2.17
2066 2307 6.568462 CGTGTTCTTGCTACCTTGATGAATTT 60.568 38.462 0.00 0.00 0.00 1.82
2067 2308 5.106555 CGTGTTCTTGCTACCTTGATGAATT 60.107 40.000 0.00 0.00 0.00 2.17
2068 2309 4.393062 CGTGTTCTTGCTACCTTGATGAAT 59.607 41.667 0.00 0.00 0.00 2.57
2069 2310 3.745975 CGTGTTCTTGCTACCTTGATGAA 59.254 43.478 0.00 0.00 0.00 2.57
2070 2311 3.006430 TCGTGTTCTTGCTACCTTGATGA 59.994 43.478 0.00 0.00 0.00 2.92
2071 2312 3.123621 GTCGTGTTCTTGCTACCTTGATG 59.876 47.826 0.00 0.00 0.00 3.07
2072 2313 3.244078 TGTCGTGTTCTTGCTACCTTGAT 60.244 43.478 0.00 0.00 0.00 2.57
2073 2314 2.101750 TGTCGTGTTCTTGCTACCTTGA 59.898 45.455 0.00 0.00 0.00 3.02
2074 2315 2.479837 TGTCGTGTTCTTGCTACCTTG 58.520 47.619 0.00 0.00 0.00 3.61
2075 2316 2.902705 TGTCGTGTTCTTGCTACCTT 57.097 45.000 0.00 0.00 0.00 3.50
2076 2317 2.563179 AGATGTCGTGTTCTTGCTACCT 59.437 45.455 0.00 0.00 0.00 3.08
2077 2318 2.960819 AGATGTCGTGTTCTTGCTACC 58.039 47.619 0.00 0.00 0.00 3.18
2078 2319 4.447724 TGAAAGATGTCGTGTTCTTGCTAC 59.552 41.667 0.00 0.00 32.65 3.58
2079 2320 4.627058 TGAAAGATGTCGTGTTCTTGCTA 58.373 39.130 0.00 0.00 32.65 3.49
2080 2321 3.466836 TGAAAGATGTCGTGTTCTTGCT 58.533 40.909 0.00 0.00 32.65 3.91
2081 2322 3.803555 CTGAAAGATGTCGTGTTCTTGC 58.196 45.455 0.00 0.00 34.07 4.01
2082 2323 3.248363 TGCTGAAAGATGTCGTGTTCTTG 59.752 43.478 0.00 0.00 34.07 3.02
2083 2324 3.466836 TGCTGAAAGATGTCGTGTTCTT 58.533 40.909 0.00 0.00 34.07 2.52
2084 2325 3.062763 CTGCTGAAAGATGTCGTGTTCT 58.937 45.455 0.00 0.00 34.07 3.01
2085 2326 2.802816 ACTGCTGAAAGATGTCGTGTTC 59.197 45.455 0.00 0.00 34.07 3.18
2086 2327 2.545526 CACTGCTGAAAGATGTCGTGTT 59.454 45.455 0.00 0.00 34.07 3.32
2087 2328 2.138320 CACTGCTGAAAGATGTCGTGT 58.862 47.619 0.00 0.00 34.07 4.49
2088 2329 2.138320 ACACTGCTGAAAGATGTCGTG 58.862 47.619 0.00 0.00 34.07 4.35
2089 2330 2.533266 ACACTGCTGAAAGATGTCGT 57.467 45.000 0.00 0.00 34.07 4.34
2090 2331 2.346847 GCTACACTGCTGAAAGATGTCG 59.653 50.000 0.00 0.00 34.07 4.35
2091 2332 3.594134 AGCTACACTGCTGAAAGATGTC 58.406 45.455 0.00 0.00 42.33 3.06
2092 2333 3.692257 AGCTACACTGCTGAAAGATGT 57.308 42.857 0.00 0.00 42.33 3.06
2093 2334 5.152097 CAAAAGCTACACTGCTGAAAGATG 58.848 41.667 0.00 0.00 43.24 2.90
2094 2335 4.217118 CCAAAAGCTACACTGCTGAAAGAT 59.783 41.667 0.00 0.00 43.24 2.40
2095 2336 3.565482 CCAAAAGCTACACTGCTGAAAGA 59.435 43.478 0.00 0.00 43.24 2.52
2096 2337 3.565482 TCCAAAAGCTACACTGCTGAAAG 59.435 43.478 0.00 0.00 43.24 2.62
2097 2338 3.550820 TCCAAAAGCTACACTGCTGAAA 58.449 40.909 0.00 0.00 43.24 2.69
2098 2339 3.141398 CTCCAAAAGCTACACTGCTGAA 58.859 45.455 0.00 0.00 43.24 3.02
2099 2340 2.771089 CTCCAAAAGCTACACTGCTGA 58.229 47.619 0.00 0.00 43.24 4.26
2119 2360 3.204418 GCTTCATGGAGCCCAAGC 58.796 61.111 15.77 6.77 36.95 4.01
2125 2366 4.139786 TGAAATATCAGGCTTCATGGAGC 58.860 43.478 18.45 18.45 41.96 4.70
2126 2367 6.896021 ATTGAAATATCAGGCTTCATGGAG 57.104 37.500 0.00 0.00 36.78 3.86
2127 2368 8.945195 AATATTGAAATATCAGGCTTCATGGA 57.055 30.769 0.00 0.00 36.78 3.41
2128 2369 8.799367 TGAATATTGAAATATCAGGCTTCATGG 58.201 33.333 0.00 0.00 36.78 3.66
2131 2372 9.412460 AGTTGAATATTGAAATATCAGGCTTCA 57.588 29.630 0.00 0.00 36.78 3.02
2285 2527 8.931385 AAATCATGGATTTTTAGCACATGTAC 57.069 30.769 0.00 0.00 38.89 2.90
2287 2529 8.095792 TCAAAATCATGGATTTTTAGCACATGT 58.904 29.630 12.80 0.00 46.07 3.21
2511 2753 1.808411 TGTTTCCCGTTCTCATGAGC 58.192 50.000 18.36 4.04 0.00 4.26
2555 2797 1.021390 GCTTGGTCTGCACATACGCT 61.021 55.000 0.00 0.00 0.00 5.07
2563 2805 2.280797 GGTCGTGCTTGGTCTGCA 60.281 61.111 0.00 0.00 38.19 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.