Multiple sequence alignment - TraesCS4B01G200000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G200000 chr4B 100.000 3973 0 0 1 3973 428408460 428412432 0.000000e+00 7337.0
1 TraesCS4B01G200000 chr4B 97.700 913 21 0 3061 3973 108646367 108645455 0.000000e+00 1570.0
2 TraesCS4B01G200000 chr4B 91.912 136 10 1 487 621 653214427 653214292 5.240000e-44 189.0
3 TraesCS4B01G200000 chr4B 76.437 348 55 17 2364 2699 428459320 428459652 3.180000e-36 163.0
4 TraesCS4B01G200000 chr4B 97.727 44 1 0 1 44 162615634 162615677 4.260000e-10 76.8
5 TraesCS4B01G200000 chr4D 93.063 1456 38 22 795 2217 348295124 348296549 0.000000e+00 2071.0
6 TraesCS4B01G200000 chr4D 97.383 726 19 0 2343 3068 348298871 348299596 0.000000e+00 1236.0
7 TraesCS4B01G200000 chr4D 81.230 309 42 9 1675 1970 348301746 348302051 6.640000e-58 235.0
8 TraesCS4B01G200000 chr4D 78.107 338 52 14 2327 2655 348302423 348302747 1.130000e-45 195.0
9 TraesCS4B01G200000 chr4D 87.356 174 17 5 630 799 483175897 483176069 1.130000e-45 195.0
10 TraesCS4B01G200000 chr4D 86.705 173 19 3 623 792 507860360 507860531 5.240000e-44 189.0
11 TraesCS4B01G200000 chr4D 77.985 268 36 14 1298 1561 348301351 348301599 3.200000e-31 147.0
12 TraesCS4B01G200000 chr6B 94.396 910 48 3 3064 3973 194873628 194874534 0.000000e+00 1395.0
13 TraesCS4B01G200000 chr6B 91.367 139 9 3 487 623 18270641 18270504 1.890000e-43 187.0
14 TraesCS4B01G200000 chr4A 90.386 1061 50 16 795 1816 117338392 117337345 0.000000e+00 1347.0
15 TraesCS4B01G200000 chr4A 97.128 383 11 0 2307 2689 117334395 117334013 0.000000e+00 647.0
16 TraesCS4B01G200000 chr4A 91.346 416 19 6 1805 2203 117334809 117334394 1.610000e-153 553.0
17 TraesCS4B01G200000 chr4A 94.785 326 17 0 2743 3068 117334012 117333687 3.540000e-140 508.0
18 TraesCS4B01G200000 chr4A 77.457 519 85 21 1678 2167 117285614 117285099 8.410000e-72 281.0
19 TraesCS4B01G200000 chr4A 87.429 175 18 3 631 801 207362856 207362682 8.710000e-47 198.0
20 TraesCS4B01G200000 chr4A 86.885 183 16 7 631 806 674616959 674616778 8.710000e-47 198.0
21 TraesCS4B01G200000 chr4A 77.174 276 44 12 1298 1561 117286027 117285759 4.140000e-30 143.0
22 TraesCS4B01G200000 chr7B 91.830 869 67 2 3067 3935 747278668 747279532 0.000000e+00 1208.0
23 TraesCS4B01G200000 chr7B 95.798 119 4 1 2199 2316 316002745 316002863 1.460000e-44 191.0
24 TraesCS4B01G200000 chr7B 87.425 167 17 3 631 793 376437448 376437282 5.240000e-44 189.0
25 TraesCS4B01G200000 chr7A 88.344 918 88 14 3068 3973 296399936 296400846 0.000000e+00 1085.0
26 TraesCS4B01G200000 chr7A 90.909 99 8 1 401 498 91928083 91928181 8.960000e-27 132.0
27 TraesCS4B01G200000 chr7A 90.099 101 9 1 399 498 329488277 329488377 3.220000e-26 130.0
28 TraesCS4B01G200000 chr7A 89.320 103 9 2 397 498 232743801 232743902 1.160000e-25 128.0
29 TraesCS4B01G200000 chr7A 90.426 94 9 0 2363 2456 649985874 649985967 1.500000e-24 124.0
30 TraesCS4B01G200000 chr7A 97.674 43 1 0 1 43 691163309 691163351 1.530000e-09 75.0
31 TraesCS4B01G200000 chr3D 90.652 706 46 7 3268 3973 200407823 200407138 0.000000e+00 920.0
32 TraesCS4B01G200000 chr3A 92.903 465 33 0 3509 3973 526849263 526848799 0.000000e+00 676.0
33 TraesCS4B01G200000 chr3A 86.188 181 18 7 617 792 79450662 79450840 5.240000e-44 189.0
34 TraesCS4B01G200000 chr3A 97.727 44 1 0 1 44 500934931 500934888 4.260000e-10 76.8
35 TraesCS4B01G200000 chr5B 88.000 200 19 4 3065 3260 101034070 101033872 8.590000e-57 231.0
36 TraesCS4B01G200000 chr5B 89.189 148 13 3 485 630 11360512 11360366 8.770000e-42 182.0
37 TraesCS4B01G200000 chr2D 88.623 167 15 4 630 792 579761410 579761244 2.420000e-47 200.0
38 TraesCS4B01G200000 chr2D 93.233 133 6 3 2183 2312 593429571 593429703 4.050000e-45 193.0
39 TraesCS4B01G200000 chr2D 91.919 99 7 1 401 498 380694289 380694387 1.930000e-28 137.0
40 TraesCS4B01G200000 chr5D 93.846 130 8 0 495 624 407351209 407351080 3.130000e-46 196.0
41 TraesCS4B01G200000 chr5D 98.198 111 2 0 2201 2311 555341173 555341063 1.130000e-45 195.0
42 TraesCS4B01G200000 chr5D 89.320 103 10 1 397 498 279292866 279292968 1.160000e-25 128.0
43 TraesCS4B01G200000 chr5D 97.778 45 1 0 1 45 72207785 72207741 1.180000e-10 78.7
44 TraesCS4B01G200000 chr6A 95.000 120 6 0 2192 2311 70424075 70423956 5.240000e-44 189.0
45 TraesCS4B01G200000 chr6A 76.449 276 43 12 3670 3927 220480531 220480260 3.220000e-26 130.0
46 TraesCS4B01G200000 chr6A 89.320 103 9 2 397 498 586802511 586802410 1.160000e-25 128.0
47 TraesCS4B01G200000 chr2A 87.425 167 17 3 630 792 10459413 10459247 5.240000e-44 189.0
48 TraesCS4B01G200000 chr2A 87.425 167 17 4 631 793 606519158 606519324 5.240000e-44 189.0
49 TraesCS4B01G200000 chr2A 96.000 50 2 0 1 50 42400544 42400495 9.150000e-12 82.4
50 TraesCS4B01G200000 chrUn 92.481 133 7 3 2183 2312 24771594 24771726 1.890000e-43 187.0
51 TraesCS4B01G200000 chrUn 95.690 116 5 0 2194 2309 51053155 51053040 1.890000e-43 187.0
52 TraesCS4B01G200000 chrUn 92.481 133 7 3 2183 2312 317331136 317331268 1.890000e-43 187.0
53 TraesCS4B01G200000 chrUn 95.690 116 5 0 2194 2309 342353526 342353411 1.890000e-43 187.0
54 TraesCS4B01G200000 chrUn 92.481 133 7 3 2183 2312 349067514 349067382 1.890000e-43 187.0
55 TraesCS4B01G200000 chrUn 97.778 45 1 0 1 45 24548938 24548894 1.180000e-10 78.7
56 TraesCS4B01G200000 chr1B 90.278 144 10 4 483 624 409879797 409879938 6.780000e-43 185.0
57 TraesCS4B01G200000 chr1B 97.500 40 1 0 4 43 636832566 636832527 7.120000e-08 69.4
58 TraesCS4B01G200000 chr5A 88.742 151 11 6 483 631 332786303 332786449 3.150000e-41 180.0
59 TraesCS4B01G200000 chr1D 88.667 150 13 4 481 627 178459655 178459507 3.150000e-41 180.0
60 TraesCS4B01G200000 chr3B 89.928 139 13 1 495 632 401018647 401018509 1.130000e-40 178.0
61 TraesCS4B01G200000 chr3B 91.837 98 7 1 402 498 652732869 652732772 6.930000e-28 135.0
62 TraesCS4B01G200000 chr3B 89.524 105 9 2 395 498 64603379 64603276 8.960000e-27 132.0
63 TraesCS4B01G200000 chr2B 88.514 148 15 2 478 624 29148783 29148637 1.130000e-40 178.0
64 TraesCS4B01G200000 chr2B 86.842 114 12 3 388 498 539710214 539710327 1.500000e-24 124.0
65 TraesCS4B01G200000 chr6D 97.826 46 1 0 1 46 132756505 132756550 3.290000e-11 80.5
66 TraesCS4B01G200000 chr1A 97.674 43 1 0 1 43 132414214 132414172 1.530000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G200000 chr4B 428408460 428412432 3972 False 7337.00 7337 100.00000 1 3973 1 chr4B.!!$F2 3972
1 TraesCS4B01G200000 chr4B 108645455 108646367 912 True 1570.00 1570 97.70000 3061 3973 1 chr4B.!!$R1 912
2 TraesCS4B01G200000 chr4D 348295124 348302747 7623 False 776.80 2071 85.55360 795 3068 5 chr4D.!!$F3 2273
3 TraesCS4B01G200000 chr6B 194873628 194874534 906 False 1395.00 1395 94.39600 3064 3973 1 chr6B.!!$F1 909
4 TraesCS4B01G200000 chr4A 117333687 117338392 4705 True 763.75 1347 93.41125 795 3068 4 chr4A.!!$R4 2273
5 TraesCS4B01G200000 chr4A 117285099 117286027 928 True 212.00 281 77.31550 1298 2167 2 chr4A.!!$R3 869
6 TraesCS4B01G200000 chr7B 747278668 747279532 864 False 1208.00 1208 91.83000 3067 3935 1 chr7B.!!$F2 868
7 TraesCS4B01G200000 chr7A 296399936 296400846 910 False 1085.00 1085 88.34400 3068 3973 1 chr7A.!!$F3 905
8 TraesCS4B01G200000 chr3D 200407138 200407823 685 True 920.00 920 90.65200 3268 3973 1 chr3D.!!$R1 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.034896 AAGTCCTACACTTGGCACCG 59.965 55.0 0.00 0.00 44.28 4.94 F
381 382 0.039798 CTGTCCACATGTGCAGTTGC 60.040 55.0 20.81 6.47 42.50 4.17 F
393 394 0.455410 GCAGTTGCACTCCACACAAA 59.545 50.0 0.00 0.00 41.59 2.83 F
882 890 0.912487 TACCGGAAGAGCAACCCCAT 60.912 55.0 9.46 0.00 0.00 4.00 F
2218 4870 0.931468 TCTACTCCCTCCATCCGGAA 59.069 55.0 9.01 0.00 42.21 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 4498 0.321122 CTCCAGTGAAGGCACCTGTC 60.321 60.000 0.00 0.00 46.32 3.51 R
2280 5317 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79 R
2282 5319 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18 R
2524 7372 1.069022 CCACCTGTGCAGAAATGAACG 60.069 52.381 0.02 0.00 0.00 3.95 R
3838 11271 2.367894 TGCTGAAACAAAATGATGGCCA 59.632 40.909 8.56 8.56 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.589216 TGGCAAGCCAAATATTGATAGC 57.411 40.909 12.11 0.00 44.12 2.97
28 29 3.959449 TGGCAAGCCAAATATTGATAGCA 59.041 39.130 12.11 0.00 44.12 3.49
29 30 4.405036 TGGCAAGCCAAATATTGATAGCAA 59.595 37.500 12.11 0.00 44.12 3.91
30 31 5.105023 TGGCAAGCCAAATATTGATAGCAAA 60.105 36.000 12.11 0.00 44.12 3.68
31 32 5.993441 GGCAAGCCAAATATTGATAGCAAAT 59.007 36.000 6.14 0.00 35.22 2.32
32 33 6.146673 GGCAAGCCAAATATTGATAGCAAATC 59.853 38.462 6.14 0.00 35.22 2.17
33 34 6.702723 GCAAGCCAAATATTGATAGCAAATCA 59.297 34.615 0.00 0.00 37.59 2.57
34 35 7.225145 GCAAGCCAAATATTGATAGCAAATCAA 59.775 33.333 14.58 14.58 41.59 2.57
35 36 9.268268 CAAGCCAAATATTGATAGCAAATCAAT 57.732 29.630 22.99 22.99 46.73 2.57
36 37 9.841295 AAGCCAAATATTGATAGCAAATCAATT 57.159 25.926 24.01 11.53 43.84 2.32
47 48 9.565090 TGATAGCAAATCAATTATGCTCTAAGT 57.435 29.630 2.36 0.00 46.98 2.24
49 50 7.269477 AGCAAATCAATTATGCTCTAAGTCC 57.731 36.000 0.00 0.00 46.98 3.85
50 51 7.059156 AGCAAATCAATTATGCTCTAAGTCCT 58.941 34.615 0.00 0.00 46.98 3.85
51 52 8.213679 AGCAAATCAATTATGCTCTAAGTCCTA 58.786 33.333 0.00 0.00 46.98 2.94
52 53 8.286097 GCAAATCAATTATGCTCTAAGTCCTAC 58.714 37.037 0.00 0.00 37.12 3.18
53 54 9.330063 CAAATCAATTATGCTCTAAGTCCTACA 57.670 33.333 0.00 0.00 0.00 2.74
54 55 8.894768 AATCAATTATGCTCTAAGTCCTACAC 57.105 34.615 0.00 0.00 0.00 2.90
55 56 7.661536 TCAATTATGCTCTAAGTCCTACACT 57.338 36.000 0.00 0.00 36.64 3.55
57 58 7.981789 TCAATTATGCTCTAAGTCCTACACTTG 59.018 37.037 0.00 0.00 45.60 3.16
58 59 4.744795 ATGCTCTAAGTCCTACACTTGG 57.255 45.455 0.00 0.00 45.60 3.61
59 60 2.233922 TGCTCTAAGTCCTACACTTGGC 59.766 50.000 0.00 1.02 45.60 4.52
60 61 2.233922 GCTCTAAGTCCTACACTTGGCA 59.766 50.000 0.00 0.00 45.60 4.92
61 62 3.851098 CTCTAAGTCCTACACTTGGCAC 58.149 50.000 0.00 0.00 45.60 5.01
62 63 2.565834 TCTAAGTCCTACACTTGGCACC 59.434 50.000 0.00 0.00 45.60 5.01
63 64 0.034896 AAGTCCTACACTTGGCACCG 59.965 55.000 0.00 0.00 44.28 4.94
64 65 1.375523 GTCCTACACTTGGCACCGG 60.376 63.158 0.00 0.00 0.00 5.28
65 66 1.839747 TCCTACACTTGGCACCGGT 60.840 57.895 0.00 0.00 0.00 5.28
66 67 1.671054 CCTACACTTGGCACCGGTG 60.671 63.158 30.66 30.66 37.05 4.94
76 77 2.978010 CACCGGTGCTCGCCTTTT 60.978 61.111 24.02 0.00 37.59 2.27
77 78 2.203294 ACCGGTGCTCGCCTTTTT 60.203 55.556 6.12 0.00 37.59 1.94
113 114 2.303707 TTTTTCGGCGATGTTCGTTC 57.696 45.000 11.76 0.00 42.81 3.95
114 115 1.218763 TTTTCGGCGATGTTCGTTCA 58.781 45.000 11.76 0.00 42.81 3.18
115 116 0.787787 TTTCGGCGATGTTCGTTCAG 59.212 50.000 11.76 0.00 42.81 3.02
116 117 1.623081 TTCGGCGATGTTCGTTCAGC 61.623 55.000 11.76 0.00 42.81 4.26
118 119 2.395690 GCGATGTTCGTTCAGCGG 59.604 61.111 17.56 4.71 45.38 5.52
119 120 2.092291 GCGATGTTCGTTCAGCGGA 61.092 57.895 17.56 0.00 45.38 5.54
120 121 1.991430 CGATGTTCGTTCAGCGGAG 59.009 57.895 10.96 0.00 42.31 4.63
121 122 1.413767 CGATGTTCGTTCAGCGGAGG 61.414 60.000 10.96 0.00 42.31 4.30
122 123 0.108804 GATGTTCGTTCAGCGGAGGA 60.109 55.000 0.00 0.00 41.72 3.71
123 124 0.108615 ATGTTCGTTCAGCGGAGGAG 60.109 55.000 0.00 0.00 41.72 3.69
124 125 1.176619 TGTTCGTTCAGCGGAGGAGA 61.177 55.000 0.00 0.00 41.72 3.71
125 126 0.173708 GTTCGTTCAGCGGAGGAGAT 59.826 55.000 0.00 0.00 41.72 2.75
126 127 0.173481 TTCGTTCAGCGGAGGAGATG 59.827 55.000 0.00 0.00 41.72 2.90
127 128 0.965866 TCGTTCAGCGGAGGAGATGT 60.966 55.000 0.00 0.00 41.72 3.06
128 129 0.108615 CGTTCAGCGGAGGAGATGTT 60.109 55.000 0.00 0.00 36.85 2.71
129 130 1.646189 GTTCAGCGGAGGAGATGTTC 58.354 55.000 0.00 0.00 0.00 3.18
130 131 1.205893 GTTCAGCGGAGGAGATGTTCT 59.794 52.381 0.00 0.00 0.00 3.01
131 132 1.107114 TCAGCGGAGGAGATGTTCTC 58.893 55.000 0.00 0.00 42.66 2.87
132 133 0.820226 CAGCGGAGGAGATGTTCTCA 59.180 55.000 0.00 0.00 45.12 3.27
133 134 1.411977 CAGCGGAGGAGATGTTCTCAT 59.588 52.381 0.00 0.00 45.12 2.90
154 155 4.077300 TCGACTACGAGGTATATGTGGT 57.923 45.455 0.00 0.00 43.81 4.16
155 156 3.811497 TCGACTACGAGGTATATGTGGTG 59.189 47.826 0.00 0.00 43.81 4.17
156 157 3.811497 CGACTACGAGGTATATGTGGTGA 59.189 47.826 0.00 0.00 42.66 4.02
157 158 4.454847 CGACTACGAGGTATATGTGGTGAT 59.545 45.833 0.00 0.00 42.66 3.06
158 159 5.640783 CGACTACGAGGTATATGTGGTGATA 59.359 44.000 0.00 0.00 42.66 2.15
159 160 6.401903 CGACTACGAGGTATATGTGGTGATAC 60.402 46.154 0.00 0.00 42.66 2.24
160 161 6.540995 ACTACGAGGTATATGTGGTGATACT 58.459 40.000 0.00 0.00 0.00 2.12
161 162 5.707242 ACGAGGTATATGTGGTGATACTG 57.293 43.478 0.00 0.00 0.00 2.74
162 163 4.523173 ACGAGGTATATGTGGTGATACTGG 59.477 45.833 0.00 0.00 0.00 4.00
163 164 4.765339 CGAGGTATATGTGGTGATACTGGA 59.235 45.833 0.00 0.00 0.00 3.86
164 165 5.419155 CGAGGTATATGTGGTGATACTGGAT 59.581 44.000 0.00 0.00 0.00 3.41
165 166 6.071334 CGAGGTATATGTGGTGATACTGGATT 60.071 42.308 0.00 0.00 0.00 3.01
166 167 7.525526 CGAGGTATATGTGGTGATACTGGATTT 60.526 40.741 0.00 0.00 0.00 2.17
167 168 8.736097 AGGTATATGTGGTGATACTGGATTTA 57.264 34.615 0.00 0.00 0.00 1.40
168 169 9.338968 AGGTATATGTGGTGATACTGGATTTAT 57.661 33.333 0.00 0.00 0.00 1.40
169 170 9.959721 GGTATATGTGGTGATACTGGATTTATT 57.040 33.333 0.00 0.00 0.00 1.40
200 201 3.822594 TTGTGATTTTCGTTCGATGGG 57.177 42.857 0.00 0.00 0.00 4.00
201 202 3.046968 TGTGATTTTCGTTCGATGGGA 57.953 42.857 0.00 0.00 0.00 4.37
202 203 3.403968 TGTGATTTTCGTTCGATGGGAA 58.596 40.909 0.00 0.00 0.00 3.97
203 204 3.815962 TGTGATTTTCGTTCGATGGGAAA 59.184 39.130 0.00 0.00 36.14 3.13
204 205 4.276183 TGTGATTTTCGTTCGATGGGAAAA 59.724 37.500 16.18 16.18 42.01 2.29
206 207 6.149640 TGTGATTTTCGTTCGATGGGAAAATA 59.850 34.615 21.44 10.94 45.38 1.40
207 208 6.687105 GTGATTTTCGTTCGATGGGAAAATAG 59.313 38.462 21.44 0.00 45.38 1.73
208 209 6.596106 TGATTTTCGTTCGATGGGAAAATAGA 59.404 34.615 21.44 13.64 45.38 1.98
209 210 6.995511 TTTTCGTTCGATGGGAAAATAGAT 57.004 33.333 12.13 0.00 35.43 1.98
210 211 6.995511 TTTCGTTCGATGGGAAAATAGATT 57.004 33.333 0.00 0.00 36.14 2.40
211 212 6.598753 TTCGTTCGATGGGAAAATAGATTC 57.401 37.500 0.00 0.00 36.14 2.52
212 213 5.914033 TCGTTCGATGGGAAAATAGATTCT 58.086 37.500 0.00 0.00 36.14 2.40
213 214 5.983720 TCGTTCGATGGGAAAATAGATTCTC 59.016 40.000 0.00 0.00 36.14 2.87
214 215 5.753438 CGTTCGATGGGAAAATAGATTCTCA 59.247 40.000 0.00 0.00 43.58 3.27
223 224 8.577296 TGGGAAAATAGATTCTCATAGACTACG 58.423 37.037 0.00 0.00 34.91 3.51
224 225 8.794553 GGGAAAATAGATTCTCATAGACTACGA 58.205 37.037 0.00 0.00 29.85 3.43
231 232 8.458573 AGATTCTCATAGACTACGAAACATCT 57.541 34.615 0.00 0.00 0.00 2.90
232 233 8.349245 AGATTCTCATAGACTACGAAACATCTG 58.651 37.037 0.00 0.00 0.00 2.90
233 234 7.392494 TTCTCATAGACTACGAAACATCTGT 57.608 36.000 0.00 0.00 0.00 3.41
234 235 7.392494 TCTCATAGACTACGAAACATCTGTT 57.608 36.000 0.00 0.00 40.50 3.16
235 236 8.502105 TCTCATAGACTACGAAACATCTGTTA 57.498 34.615 0.00 0.00 37.25 2.41
236 237 8.953313 TCTCATAGACTACGAAACATCTGTTAA 58.047 33.333 0.00 0.00 37.25 2.01
237 238 9.737427 CTCATAGACTACGAAACATCTGTTAAT 57.263 33.333 0.00 0.00 37.25 1.40
263 264 8.829514 TTCGTTAATTCTAAAATATTGTGCCG 57.170 30.769 0.00 0.00 0.00 5.69
264 265 7.411274 TCGTTAATTCTAAAATATTGTGCCGG 58.589 34.615 0.00 0.00 0.00 6.13
265 266 7.066043 TCGTTAATTCTAAAATATTGTGCCGGT 59.934 33.333 1.90 0.00 0.00 5.28
266 267 7.698970 CGTTAATTCTAAAATATTGTGCCGGTT 59.301 33.333 1.90 0.00 0.00 4.44
267 268 9.361315 GTTAATTCTAAAATATTGTGCCGGTTT 57.639 29.630 1.90 0.00 0.00 3.27
270 271 7.925043 TTCTAAAATATTGTGCCGGTTTAGA 57.075 32.000 12.92 12.92 36.36 2.10
271 272 7.925043 TCTAAAATATTGTGCCGGTTTAGAA 57.075 32.000 14.02 3.20 35.64 2.10
272 273 8.514330 TCTAAAATATTGTGCCGGTTTAGAAT 57.486 30.769 14.02 9.15 35.64 2.40
273 274 8.617809 TCTAAAATATTGTGCCGGTTTAGAATC 58.382 33.333 14.02 0.00 35.64 2.52
274 275 7.404671 AAAATATTGTGCCGGTTTAGAATCT 57.595 32.000 1.90 0.00 0.00 2.40
275 276 7.404671 AAATATTGTGCCGGTTTAGAATCTT 57.595 32.000 1.90 0.00 0.00 2.40
276 277 4.701956 ATTGTGCCGGTTTAGAATCTTG 57.298 40.909 1.90 0.00 0.00 3.02
277 278 3.134574 TGTGCCGGTTTAGAATCTTGT 57.865 42.857 1.90 0.00 0.00 3.16
278 279 4.274602 TGTGCCGGTTTAGAATCTTGTA 57.725 40.909 1.90 0.00 0.00 2.41
279 280 4.839121 TGTGCCGGTTTAGAATCTTGTAT 58.161 39.130 1.90 0.00 0.00 2.29
280 281 4.634004 TGTGCCGGTTTAGAATCTTGTATG 59.366 41.667 1.90 0.00 0.00 2.39
281 282 4.035208 GTGCCGGTTTAGAATCTTGTATGG 59.965 45.833 1.90 0.00 0.00 2.74
282 283 3.564225 GCCGGTTTAGAATCTTGTATGGG 59.436 47.826 1.90 0.00 0.00 4.00
283 284 4.777463 CCGGTTTAGAATCTTGTATGGGT 58.223 43.478 0.00 0.00 0.00 4.51
284 285 4.574828 CCGGTTTAGAATCTTGTATGGGTG 59.425 45.833 0.00 0.00 0.00 4.61
285 286 5.424757 CGGTTTAGAATCTTGTATGGGTGA 58.575 41.667 0.00 0.00 0.00 4.02
286 287 5.878116 CGGTTTAGAATCTTGTATGGGTGAA 59.122 40.000 0.00 0.00 0.00 3.18
287 288 6.037172 CGGTTTAGAATCTTGTATGGGTGAAG 59.963 42.308 0.00 0.00 0.00 3.02
288 289 6.318900 GGTTTAGAATCTTGTATGGGTGAAGG 59.681 42.308 0.00 0.00 0.00 3.46
289 290 6.636454 TTAGAATCTTGTATGGGTGAAGGT 57.364 37.500 0.00 0.00 0.00 3.50
290 291 7.743116 TTAGAATCTTGTATGGGTGAAGGTA 57.257 36.000 0.00 0.00 0.00 3.08
291 292 6.636454 AGAATCTTGTATGGGTGAAGGTAA 57.364 37.500 0.00 0.00 0.00 2.85
292 293 7.027874 AGAATCTTGTATGGGTGAAGGTAAA 57.972 36.000 0.00 0.00 0.00 2.01
293 294 7.466804 AGAATCTTGTATGGGTGAAGGTAAAA 58.533 34.615 0.00 0.00 0.00 1.52
294 295 7.611855 AGAATCTTGTATGGGTGAAGGTAAAAG 59.388 37.037 0.00 0.00 0.00 2.27
295 296 6.442541 TCTTGTATGGGTGAAGGTAAAAGA 57.557 37.500 0.00 0.00 0.00 2.52
296 297 7.027874 TCTTGTATGGGTGAAGGTAAAAGAT 57.972 36.000 0.00 0.00 0.00 2.40
297 298 6.884295 TCTTGTATGGGTGAAGGTAAAAGATG 59.116 38.462 0.00 0.00 0.00 2.90
298 299 6.134535 TGTATGGGTGAAGGTAAAAGATGT 57.865 37.500 0.00 0.00 0.00 3.06
299 300 5.943416 TGTATGGGTGAAGGTAAAAGATGTG 59.057 40.000 0.00 0.00 0.00 3.21
300 301 4.447138 TGGGTGAAGGTAAAAGATGTGT 57.553 40.909 0.00 0.00 0.00 3.72
301 302 4.141287 TGGGTGAAGGTAAAAGATGTGTG 58.859 43.478 0.00 0.00 0.00 3.82
302 303 3.057526 GGGTGAAGGTAAAAGATGTGTGC 60.058 47.826 0.00 0.00 0.00 4.57
303 304 3.364964 GGTGAAGGTAAAAGATGTGTGCG 60.365 47.826 0.00 0.00 0.00 5.34
304 305 3.250040 GTGAAGGTAAAAGATGTGTGCGT 59.750 43.478 0.00 0.00 0.00 5.24
305 306 3.249799 TGAAGGTAAAAGATGTGTGCGTG 59.750 43.478 0.00 0.00 0.00 5.34
306 307 1.535462 AGGTAAAAGATGTGTGCGTGC 59.465 47.619 0.00 0.00 0.00 5.34
307 308 1.265635 GGTAAAAGATGTGTGCGTGCA 59.734 47.619 0.00 0.00 0.00 4.57
308 309 2.095263 GGTAAAAGATGTGTGCGTGCAT 60.095 45.455 0.00 0.00 0.00 3.96
309 310 2.798976 AAAAGATGTGTGCGTGCATT 57.201 40.000 0.00 0.00 0.00 3.56
310 311 2.798976 AAAGATGTGTGCGTGCATTT 57.201 40.000 0.00 0.00 0.00 2.32
311 312 3.913548 AAAGATGTGTGCGTGCATTTA 57.086 38.095 0.00 0.00 0.00 1.40
312 313 4.439305 AAAGATGTGTGCGTGCATTTAT 57.561 36.364 0.00 0.00 0.00 1.40
313 314 5.559427 AAAGATGTGTGCGTGCATTTATA 57.441 34.783 0.00 0.00 0.00 0.98
314 315 4.801147 AGATGTGTGCGTGCATTTATAG 57.199 40.909 0.00 0.00 0.00 1.31
315 316 3.561310 AGATGTGTGCGTGCATTTATAGG 59.439 43.478 0.00 0.00 0.00 2.57
316 317 1.400142 TGTGTGCGTGCATTTATAGGC 59.600 47.619 0.00 0.00 0.00 3.93
317 318 1.400142 GTGTGCGTGCATTTATAGGCA 59.600 47.619 0.00 0.00 39.01 4.75
318 319 2.033299 GTGTGCGTGCATTTATAGGCAT 59.967 45.455 0.00 0.00 43.70 4.40
319 320 2.290367 TGTGCGTGCATTTATAGGCATC 59.710 45.455 0.00 0.00 43.70 3.91
320 321 1.879380 TGCGTGCATTTATAGGCATCC 59.121 47.619 0.00 0.00 43.70 3.51
321 322 1.879380 GCGTGCATTTATAGGCATCCA 59.121 47.619 0.00 0.00 43.70 3.41
322 323 2.095567 GCGTGCATTTATAGGCATCCAG 60.096 50.000 0.00 0.00 43.70 3.86
323 324 3.402110 CGTGCATTTATAGGCATCCAGA 58.598 45.455 0.00 0.00 43.70 3.86
324 325 3.187227 CGTGCATTTATAGGCATCCAGAC 59.813 47.826 0.00 0.00 43.70 3.51
325 326 4.392940 GTGCATTTATAGGCATCCAGACT 58.607 43.478 0.00 0.00 43.70 3.24
326 327 4.214971 GTGCATTTATAGGCATCCAGACTG 59.785 45.833 0.00 0.00 43.70 3.51
327 328 4.141413 TGCATTTATAGGCATCCAGACTGT 60.141 41.667 0.93 0.00 35.91 3.55
328 329 5.071653 TGCATTTATAGGCATCCAGACTGTA 59.928 40.000 0.93 0.00 35.91 2.74
329 330 5.641209 GCATTTATAGGCATCCAGACTGTAG 59.359 44.000 0.93 0.00 35.25 2.74
330 331 4.873746 TTATAGGCATCCAGACTGTAGC 57.126 45.455 0.93 2.29 35.25 3.58
331 332 2.461300 TAGGCATCCAGACTGTAGCT 57.539 50.000 0.93 0.00 35.25 3.32
332 333 2.461300 AGGCATCCAGACTGTAGCTA 57.539 50.000 0.93 0.00 30.74 3.32
333 334 2.315176 AGGCATCCAGACTGTAGCTAG 58.685 52.381 0.93 0.00 30.74 3.42
334 335 2.035632 GGCATCCAGACTGTAGCTAGT 58.964 52.381 0.93 0.00 0.00 2.57
335 336 2.035321 GGCATCCAGACTGTAGCTAGTC 59.965 54.545 8.37 8.37 45.83 2.59
345 346 5.527951 GACTGTAGCTAGTCAGATGAATGG 58.472 45.833 16.10 0.00 45.03 3.16
346 347 4.202202 ACTGTAGCTAGTCAGATGAATGGC 60.202 45.833 16.10 10.16 44.97 4.40
349 350 2.402305 GCTAGTCAGATGAATGGCTCG 58.598 52.381 10.78 0.00 42.11 5.03
350 351 2.402305 CTAGTCAGATGAATGGCTCGC 58.598 52.381 0.00 0.00 36.33 5.03
351 352 0.829333 AGTCAGATGAATGGCTCGCT 59.171 50.000 0.00 0.00 25.14 4.93
352 353 1.202510 AGTCAGATGAATGGCTCGCTC 60.203 52.381 0.00 0.00 25.14 5.03
353 354 0.105593 TCAGATGAATGGCTCGCTCC 59.894 55.000 0.00 0.00 0.00 4.70
354 355 1.068753 AGATGAATGGCTCGCTCCG 59.931 57.895 0.00 0.00 0.00 4.63
355 356 1.227380 GATGAATGGCTCGCTCCGT 60.227 57.895 0.00 0.00 0.00 4.69
356 357 0.811616 GATGAATGGCTCGCTCCGTT 60.812 55.000 0.69 0.69 38.01 4.44
357 358 1.091771 ATGAATGGCTCGCTCCGTTG 61.092 55.000 5.18 0.00 35.58 4.10
358 359 2.436646 AATGGCTCGCTCCGTTGG 60.437 61.111 0.33 0.00 34.24 3.77
359 360 3.976701 AATGGCTCGCTCCGTTGGG 62.977 63.158 0.33 0.00 34.24 4.12
363 364 3.382832 CTCGCTCCGTTGGGACCT 61.383 66.667 0.00 0.00 37.43 3.85
364 365 3.649277 CTCGCTCCGTTGGGACCTG 62.649 68.421 0.00 0.00 37.43 4.00
365 366 4.003788 CGCTCCGTTGGGACCTGT 62.004 66.667 0.00 0.00 37.43 4.00
366 367 2.047179 GCTCCGTTGGGACCTGTC 60.047 66.667 0.00 0.00 37.43 3.51
376 377 4.798433 GACCTGTCCACATGTGCA 57.202 55.556 20.81 12.67 0.00 4.57
377 378 2.548178 GACCTGTCCACATGTGCAG 58.452 57.895 20.81 20.63 0.00 4.41
378 379 0.250467 GACCTGTCCACATGTGCAGT 60.250 55.000 23.54 14.92 0.00 4.40
379 380 0.183492 ACCTGTCCACATGTGCAGTT 59.817 50.000 23.54 12.98 0.00 3.16
380 381 0.594602 CCTGTCCACATGTGCAGTTG 59.405 55.000 23.54 11.33 0.00 3.16
381 382 0.039798 CTGTCCACATGTGCAGTTGC 60.040 55.000 20.81 6.47 42.50 4.17
391 392 3.826221 GCAGTTGCACTCCACACA 58.174 55.556 0.00 0.00 41.59 3.72
392 393 2.105984 GCAGTTGCACTCCACACAA 58.894 52.632 0.00 0.00 41.59 3.33
393 394 0.455410 GCAGTTGCACTCCACACAAA 59.545 50.000 0.00 0.00 41.59 2.83
394 395 1.135141 GCAGTTGCACTCCACACAAAA 60.135 47.619 0.00 0.00 41.59 2.44
395 396 2.673610 GCAGTTGCACTCCACACAAAAA 60.674 45.455 0.00 0.00 41.59 1.94
416 417 7.828508 AAAAATAGGTACTTCCTCCGTTTTT 57.171 32.000 0.00 0.00 44.42 1.94
417 418 8.922931 AAAAATAGGTACTTCCTCCGTTTTTA 57.077 30.769 11.67 0.00 44.42 1.52
418 419 9.524496 AAAAATAGGTACTTCCTCCGTTTTTAT 57.476 29.630 11.67 0.00 44.42 1.40
419 420 9.524496 AAAATAGGTACTTCCTCCGTTTTTATT 57.476 29.630 0.00 0.00 44.42 1.40
420 421 9.524496 AAATAGGTACTTCCTCCGTTTTTATTT 57.476 29.630 0.00 0.00 44.42 1.40
422 423 9.828039 ATAGGTACTTCCTCCGTTTTTATTTAG 57.172 33.333 0.00 0.00 44.42 1.85
423 424 7.683578 AGGTACTTCCTCCGTTTTTATTTAGT 58.316 34.615 0.00 0.00 44.42 2.24
424 425 7.821359 AGGTACTTCCTCCGTTTTTATTTAGTC 59.179 37.037 0.00 0.00 44.42 2.59
425 426 7.065085 GGTACTTCCTCCGTTTTTATTTAGTCC 59.935 40.741 0.00 0.00 0.00 3.85
426 427 5.640783 ACTTCCTCCGTTTTTATTTAGTCCG 59.359 40.000 0.00 0.00 0.00 4.79
427 428 3.934579 TCCTCCGTTTTTATTTAGTCCGC 59.065 43.478 0.00 0.00 0.00 5.54
428 429 3.064408 CCTCCGTTTTTATTTAGTCCGCC 59.936 47.826 0.00 0.00 0.00 6.13
429 430 3.937079 CTCCGTTTTTATTTAGTCCGCCT 59.063 43.478 0.00 0.00 0.00 5.52
430 431 5.083533 TCCGTTTTTATTTAGTCCGCCTA 57.916 39.130 0.00 0.00 0.00 3.93
431 432 5.673514 TCCGTTTTTATTTAGTCCGCCTAT 58.326 37.500 0.00 0.00 0.00 2.57
432 433 6.114767 TCCGTTTTTATTTAGTCCGCCTATT 58.885 36.000 0.00 0.00 0.00 1.73
433 434 7.271511 TCCGTTTTTATTTAGTCCGCCTATTA 58.728 34.615 0.00 0.00 0.00 0.98
434 435 7.439056 TCCGTTTTTATTTAGTCCGCCTATTAG 59.561 37.037 0.00 0.00 0.00 1.73
435 436 7.225341 CCGTTTTTATTTAGTCCGCCTATTAGT 59.775 37.037 0.00 0.00 0.00 2.24
436 437 8.606602 CGTTTTTATTTAGTCCGCCTATTAGTT 58.393 33.333 0.00 0.00 0.00 2.24
440 441 9.669887 TTTATTTAGTCCGCCTATTAGTTTTGA 57.330 29.630 0.00 0.00 0.00 2.69
441 442 9.841295 TTATTTAGTCCGCCTATTAGTTTTGAT 57.159 29.630 0.00 0.00 0.00 2.57
442 443 7.781548 TTTAGTCCGCCTATTAGTTTTGATC 57.218 36.000 0.00 0.00 0.00 2.92
443 444 5.353394 AGTCCGCCTATTAGTTTTGATCA 57.647 39.130 0.00 0.00 0.00 2.92
444 445 5.741011 AGTCCGCCTATTAGTTTTGATCAA 58.259 37.500 3.38 3.38 0.00 2.57
445 446 6.177610 AGTCCGCCTATTAGTTTTGATCAAA 58.822 36.000 16.91 16.91 0.00 2.69
446 447 6.316390 AGTCCGCCTATTAGTTTTGATCAAAG 59.684 38.462 19.64 7.43 0.00 2.77
447 448 5.588648 TCCGCCTATTAGTTTTGATCAAAGG 59.411 40.000 19.64 16.31 0.00 3.11
448 449 5.357032 CCGCCTATTAGTTTTGATCAAAGGT 59.643 40.000 19.64 13.68 0.00 3.50
449 450 6.540914 CCGCCTATTAGTTTTGATCAAAGGTA 59.459 38.462 19.64 12.78 0.00 3.08
450 451 7.066525 CCGCCTATTAGTTTTGATCAAAGGTAA 59.933 37.037 19.64 19.26 0.00 2.85
451 452 8.122952 CGCCTATTAGTTTTGATCAAAGGTAAG 58.877 37.037 19.64 13.27 0.00 2.34
452 453 7.915923 GCCTATTAGTTTTGATCAAAGGTAAGC 59.084 37.037 19.64 15.48 0.00 3.09
453 454 8.122952 CCTATTAGTTTTGATCAAAGGTAAGCG 58.877 37.037 19.64 14.32 0.00 4.68
454 455 6.870971 TTAGTTTTGATCAAAGGTAAGCGT 57.129 33.333 19.64 4.12 0.00 5.07
455 456 5.767816 AGTTTTGATCAAAGGTAAGCGTT 57.232 34.783 19.64 0.00 0.00 4.84
456 457 5.519722 AGTTTTGATCAAAGGTAAGCGTTG 58.480 37.500 19.64 0.00 0.00 4.10
457 458 5.298276 AGTTTTGATCAAAGGTAAGCGTTGA 59.702 36.000 19.64 0.00 0.00 3.18
458 459 5.759506 TTTGATCAAAGGTAAGCGTTGAA 57.240 34.783 16.91 0.00 0.00 2.69
459 460 5.759506 TTGATCAAAGGTAAGCGTTGAAA 57.240 34.783 5.45 0.00 0.00 2.69
460 461 5.103290 TGATCAAAGGTAAGCGTTGAAAC 57.897 39.130 0.00 1.28 0.00 2.78
461 462 4.819630 TGATCAAAGGTAAGCGTTGAAACT 59.180 37.500 0.00 0.00 0.00 2.66
462 463 5.298276 TGATCAAAGGTAAGCGTTGAAACTT 59.702 36.000 0.00 0.00 0.00 2.66
463 464 5.570234 TCAAAGGTAAGCGTTGAAACTTT 57.430 34.783 0.00 0.00 0.00 2.66
464 465 5.336744 TCAAAGGTAAGCGTTGAAACTTTG 58.663 37.500 15.13 15.13 42.61 2.77
465 466 5.124138 TCAAAGGTAAGCGTTGAAACTTTGA 59.876 36.000 18.17 18.17 45.60 2.69
466 467 5.767816 AAGGTAAGCGTTGAAACTTTGAT 57.232 34.783 0.00 0.00 0.00 2.57
467 468 6.870971 AAGGTAAGCGTTGAAACTTTGATA 57.129 33.333 0.00 0.00 0.00 2.15
468 469 6.870971 AGGTAAGCGTTGAAACTTTGATAA 57.129 33.333 0.00 0.00 0.00 1.75
469 470 7.266922 AGGTAAGCGTTGAAACTTTGATAAA 57.733 32.000 0.00 0.00 0.00 1.40
470 471 7.360361 AGGTAAGCGTTGAAACTTTGATAAAG 58.640 34.615 0.05 0.05 44.10 1.85
508 509 9.939802 AAATATTAACATATACTTCCTCCGTCC 57.060 33.333 0.00 0.00 0.00 4.79
509 510 6.989155 ATTAACATATACTTCCTCCGTCCA 57.011 37.500 0.00 0.00 0.00 4.02
510 511 6.795144 TTAACATATACTTCCTCCGTCCAA 57.205 37.500 0.00 0.00 0.00 3.53
511 512 5.687166 AACATATACTTCCTCCGTCCAAA 57.313 39.130 0.00 0.00 0.00 3.28
512 513 5.687166 ACATATACTTCCTCCGTCCAAAA 57.313 39.130 0.00 0.00 0.00 2.44
513 514 6.057321 ACATATACTTCCTCCGTCCAAAAA 57.943 37.500 0.00 0.00 0.00 1.94
514 515 6.659824 ACATATACTTCCTCCGTCCAAAAAT 58.340 36.000 0.00 0.00 0.00 1.82
515 516 7.798071 ACATATACTTCCTCCGTCCAAAAATA 58.202 34.615 0.00 0.00 0.00 1.40
516 517 7.713942 ACATATACTTCCTCCGTCCAAAAATAC 59.286 37.037 0.00 0.00 0.00 1.89
517 518 4.635699 ACTTCCTCCGTCCAAAAATACT 57.364 40.909 0.00 0.00 0.00 2.12
518 519 4.981812 ACTTCCTCCGTCCAAAAATACTT 58.018 39.130 0.00 0.00 0.00 2.24
519 520 4.760204 ACTTCCTCCGTCCAAAAATACTTG 59.240 41.667 0.00 0.00 0.00 3.16
520 521 4.360951 TCCTCCGTCCAAAAATACTTGT 57.639 40.909 0.00 0.00 0.00 3.16
521 522 4.320870 TCCTCCGTCCAAAAATACTTGTC 58.679 43.478 0.00 0.00 0.00 3.18
522 523 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
523 524 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
524 525 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
525 526 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
526 527 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
527 528 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
528 529 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
529 530 7.096230 CCGTCCAAAAATACTTGTCATCAAAAC 60.096 37.037 0.00 0.00 32.87 2.43
530 531 7.357206 CGTCCAAAAATACTTGTCATCAAAACG 60.357 37.037 0.00 0.00 32.87 3.60
531 532 6.920758 TCCAAAAATACTTGTCATCAAAACGG 59.079 34.615 0.00 0.00 32.87 4.44
532 533 6.920758 CCAAAAATACTTGTCATCAAAACGGA 59.079 34.615 0.00 0.00 32.87 4.69
533 534 7.598493 CCAAAAATACTTGTCATCAAAACGGAT 59.402 33.333 0.00 0.00 32.87 4.18
534 535 9.619316 CAAAAATACTTGTCATCAAAACGGATA 57.381 29.630 0.00 0.00 32.87 2.59
610 611 9.834628 TTATTTTGATGACAAGTATTTTCGGAC 57.165 29.630 0.00 0.00 37.32 4.79
611 612 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
612 613 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
613 614 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
614 615 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
615 616 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
616 617 2.564062 ACAAGTATTTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
617 618 3.007182 ACAAGTATTTTCGGACGGAGGAA 59.993 43.478 0.00 0.00 0.00 3.36
618 619 3.521947 AGTATTTTCGGACGGAGGAAG 57.478 47.619 0.00 0.00 0.00 3.46
619 620 2.830321 AGTATTTTCGGACGGAGGAAGT 59.170 45.455 0.00 0.00 0.00 3.01
620 621 4.019174 AGTATTTTCGGACGGAGGAAGTA 58.981 43.478 0.00 0.00 0.00 2.24
621 622 2.730550 TTTTCGGACGGAGGAAGTAC 57.269 50.000 0.00 0.00 0.00 2.73
622 623 1.915141 TTTCGGACGGAGGAAGTACT 58.085 50.000 0.00 0.00 0.00 2.73
623 624 2.787473 TTCGGACGGAGGAAGTACTA 57.213 50.000 0.00 0.00 0.00 1.82
624 625 3.287867 TTCGGACGGAGGAAGTACTAT 57.712 47.619 0.00 0.00 0.00 2.12
625 626 4.422073 TTCGGACGGAGGAAGTACTATA 57.578 45.455 0.00 0.00 0.00 1.31
626 627 3.733337 TCGGACGGAGGAAGTACTATAC 58.267 50.000 0.00 0.00 0.00 1.47
627 628 3.389329 TCGGACGGAGGAAGTACTATACT 59.611 47.826 0.00 0.00 41.73 2.12
628 629 4.588951 TCGGACGGAGGAAGTACTATACTA 59.411 45.833 0.00 0.00 38.26 1.82
629 630 4.928615 CGGACGGAGGAAGTACTATACTAG 59.071 50.000 0.00 0.00 38.26 2.57
630 631 5.510520 CGGACGGAGGAAGTACTATACTAGT 60.511 48.000 0.00 0.00 38.26 2.57
631 632 6.294787 CGGACGGAGGAAGTACTATACTAGTA 60.295 46.154 4.77 4.77 38.26 1.82
770 771 8.830201 GACTTCTGTCAAATCTATATGCAGAT 57.170 34.615 0.00 0.00 42.48 2.90
771 772 9.270640 GACTTCTGTCAAATCTATATGCAGATT 57.729 33.333 0.00 0.00 42.48 2.40
787 788 9.965824 ATATGCAGATTAAATAAAAACGGAAGG 57.034 29.630 0.00 0.00 0.00 3.46
788 789 7.455641 TGCAGATTAAATAAAAACGGAAGGA 57.544 32.000 0.00 0.00 0.00 3.36
789 790 7.535139 TGCAGATTAAATAAAAACGGAAGGAG 58.465 34.615 0.00 0.00 0.00 3.69
790 791 7.175990 TGCAGATTAAATAAAAACGGAAGGAGT 59.824 33.333 0.00 0.00 0.00 3.85
791 792 8.671028 GCAGATTAAATAAAAACGGAAGGAGTA 58.329 33.333 0.00 0.00 0.00 2.59
821 822 7.976175 TGTTGCAAAATGTGTCTATGTACAAAA 59.024 29.630 0.00 0.00 0.00 2.44
822 823 8.977505 GTTGCAAAATGTGTCTATGTACAAAAT 58.022 29.630 0.00 0.00 0.00 1.82
834 835 3.336468 TGTACAAAATAACGACCGGCAT 58.664 40.909 0.00 0.00 0.00 4.40
837 838 2.160813 ACAAAATAACGACCGGCATGAC 59.839 45.455 0.00 0.00 0.00 3.06
838 839 1.375551 AAATAACGACCGGCATGACC 58.624 50.000 0.00 0.00 0.00 4.02
882 890 0.912487 TACCGGAAGAGCAACCCCAT 60.912 55.000 9.46 0.00 0.00 4.00
959 967 1.595382 GGAGCATCACCCGAATCGG 60.595 63.158 15.85 15.85 41.99 4.18
1012 1020 1.291184 CGCACCAATGACTTCGCTCA 61.291 55.000 0.00 0.00 0.00 4.26
1193 1216 1.002990 CAGTCATGTGAGCAGGCCA 60.003 57.895 5.01 0.00 0.00 5.36
1198 1222 1.001641 ATGTGAGCAGGCCAAGTCC 60.002 57.895 5.01 0.00 0.00 3.85
1253 1277 9.302773 CGATTAAATTATTCGAATCGTTTCTCC 57.697 33.333 15.25 8.16 43.44 3.71
1399 1423 5.106157 CCAGGTGAATTTGGACAAGACATAC 60.106 44.000 0.00 0.00 36.55 2.39
1521 1566 2.440517 ATGTTGCATATCACTGCCCA 57.559 45.000 0.00 0.00 41.58 5.36
1612 1665 5.013861 TCGAACAGAAATCGTACTTTTGC 57.986 39.130 0.00 0.00 40.99 3.68
1642 1695 3.427528 GTGCAAGCAACACTGAATCATTG 59.572 43.478 0.00 0.00 35.12 2.82
1649 1702 6.985117 AGCAACACTGAATCATTGTTTACAT 58.015 32.000 14.96 1.28 35.59 2.29
1652 1705 6.182039 ACACTGAATCATTGTTTACATCCG 57.818 37.500 0.08 0.00 0.00 4.18
1669 1722 6.624352 ACATCCGAATGAAATCTAATGGTG 57.376 37.500 0.00 0.00 36.67 4.17
1676 1749 7.698130 CCGAATGAAATCTAATGGTGTTTCTTC 59.302 37.037 0.00 0.00 33.06 2.87
1791 1864 3.996921 ATGGTGAATCTCAACTCTGCT 57.003 42.857 0.00 0.00 34.53 4.24
1797 1870 1.261480 ATCTCAACTCTGCTCCACGT 58.739 50.000 0.00 0.00 0.00 4.49
1851 4479 6.129179 TCATCTCTGTGATACATCCACACTA 58.871 40.000 0.00 0.00 39.36 2.74
1852 4480 6.607198 TCATCTCTGTGATACATCCACACTAA 59.393 38.462 0.00 0.00 39.36 2.24
1856 4484 7.614192 TCTCTGTGATACATCCACACTAACTTA 59.386 37.037 0.00 0.00 39.36 2.24
1862 4498 9.093970 TGATACATCCACACTAACTTATTTTCG 57.906 33.333 0.00 0.00 0.00 3.46
2095 4747 1.404717 CGAGGAGCTGCTTGTGTACAT 60.405 52.381 9.91 0.00 0.00 2.29
2167 4819 3.004419 GTGGCAGAGGAAACTGGTAAAAC 59.996 47.826 0.00 0.00 44.43 2.43
2211 4863 5.403558 TGTCTAATCATCTACTCCCTCCA 57.596 43.478 0.00 0.00 0.00 3.86
2217 4869 1.158904 ATCTACTCCCTCCATCCGGA 58.841 55.000 6.61 6.61 39.79 5.14
2218 4870 0.931468 TCTACTCCCTCCATCCGGAA 59.069 55.000 9.01 0.00 42.21 4.30
2219 4871 1.503784 TCTACTCCCTCCATCCGGAAT 59.496 52.381 9.01 0.00 42.21 3.01
2222 4874 2.047830 ACTCCCTCCATCCGGAATTAC 58.952 52.381 9.01 0.00 42.21 1.89
2223 4875 2.330216 CTCCCTCCATCCGGAATTACT 58.670 52.381 9.01 0.00 42.21 2.24
2224 4876 2.706190 CTCCCTCCATCCGGAATTACTT 59.294 50.000 9.01 0.00 42.21 2.24
2229 4881 3.869065 TCCATCCGGAATTACTTGTCAC 58.131 45.455 9.01 0.00 38.83 3.67
2230 4882 3.262151 TCCATCCGGAATTACTTGTCACA 59.738 43.478 9.01 0.00 38.83 3.58
2231 4883 4.006989 CCATCCGGAATTACTTGTCACAA 58.993 43.478 9.01 0.00 0.00 3.33
2232 4884 4.457603 CCATCCGGAATTACTTGTCACAAA 59.542 41.667 9.01 0.00 0.00 2.83
2234 4886 6.442952 CATCCGGAATTACTTGTCACAAAAA 58.557 36.000 9.01 0.00 0.00 1.94
2235 4887 6.642707 TCCGGAATTACTTGTCACAAAAAT 57.357 33.333 0.00 0.00 0.00 1.82
2236 4888 6.442952 TCCGGAATTACTTGTCACAAAAATG 58.557 36.000 0.00 0.00 0.00 2.32
2238 4890 6.442952 CGGAATTACTTGTCACAAAAATGGA 58.557 36.000 0.00 0.00 0.00 3.41
2239 4891 7.090173 CGGAATTACTTGTCACAAAAATGGAT 58.910 34.615 0.00 0.00 0.00 3.41
2241 4893 7.872483 GGAATTACTTGTCACAAAAATGGATGT 59.128 33.333 0.00 0.00 0.00 3.06
2245 4897 7.765695 ACTTGTCACAAAAATGGATGTATCT 57.234 32.000 0.00 0.00 0.00 1.98
2246 4898 8.862325 ACTTGTCACAAAAATGGATGTATCTA 57.138 30.769 0.00 0.00 0.00 1.98
2247 4899 8.730680 ACTTGTCACAAAAATGGATGTATCTAC 58.269 33.333 0.00 0.00 0.00 2.59
2249 4901 8.628630 TGTCACAAAAATGGATGTATCTACAA 57.371 30.769 0.00 0.00 39.99 2.41
2284 5321 8.706936 CATCTAGATACATTCATTTCTTGGACG 58.293 37.037 4.54 0.00 0.00 4.79
2285 5322 8.007405 TCTAGATACATTCATTTCTTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
2286 5323 8.138074 TCTAGATACATTCATTTCTTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
2287 5324 6.644347 AGATACATTCATTTCTTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
2289 5326 8.258007 AGATACATTCATTTCTTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
2293 5330 6.737254 TTCATTTCTTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
2294 5331 4.868171 TCATTTCTTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
2296 5333 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2297 5334 3.841643 TCTTGGACGAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2298 5335 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
2335 7163 7.571080 AGTTCTACAGGCTAGAGTATGTAAC 57.429 40.000 0.00 0.00 0.00 2.50
2459 7307 4.133820 CCAGTTCAGTTTGGTATGTCACA 58.866 43.478 0.00 0.00 0.00 3.58
2477 7325 1.357761 ACACCAATCCGGGAATCCTTT 59.642 47.619 0.00 0.00 40.22 3.11
2524 7372 2.031560 TGACATGTTGACTTGTTGCGAC 59.968 45.455 0.00 0.00 34.86 5.19
2761 7609 6.536447 AGTCCAATGCAAATCAATTTCCTTT 58.464 32.000 0.00 0.00 0.00 3.11
2773 7621 8.680039 AATCAATTTCCTTTGCAATTCTTTGA 57.320 26.923 0.00 6.27 34.60 2.69
2860 7708 4.069304 CGAAACTGGACCCACAATTTCTA 58.931 43.478 11.07 0.00 0.00 2.10
2921 7769 3.843422 TCCCTGATTTTTCAGCCTTGAA 58.157 40.909 0.00 0.00 41.44 2.69
2998 7846 2.303022 GTGACCAAGGATGACCAAGAGA 59.697 50.000 0.00 0.00 38.94 3.10
3031 7879 2.614520 CTGCAGCATGGAAGATGAAGAG 59.385 50.000 0.00 0.00 34.45 2.85
3084 8254 7.040340 GCTACTACTACTAGATCATGAAAGGCA 60.040 40.741 0.00 0.00 0.00 4.75
3544 9551 6.127647 GCATTTTCTGGAGATGGTTACATTGA 60.128 38.462 0.00 0.00 37.47 2.57
3793 11222 4.083003 GCCAATCAGAACCGTATTGACAAA 60.083 41.667 0.00 0.00 33.38 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.558818 TCAATATTTGGCTTGCCAAATGTT 58.441 33.333 40.40 37.64 45.43 2.71
1 2 5.163281 TCAATATTTGGCTTGCCAAATGT 57.837 34.783 40.40 35.55 46.02 2.71
2 3 6.073440 GCTATCAATATTTGGCTTGCCAAATG 60.073 38.462 40.40 31.82 46.02 2.32
4 5 5.105023 TGCTATCAATATTTGGCTTGCCAAA 60.105 36.000 33.01 33.01 42.68 3.28
5 6 4.405036 TGCTATCAATATTTGGCTTGCCAA 59.595 37.500 21.59 21.59 0.00 4.52
6 7 3.959449 TGCTATCAATATTTGGCTTGCCA 59.041 39.130 10.65 10.65 0.00 4.92
7 8 4.589216 TGCTATCAATATTTGGCTTGCC 57.411 40.909 4.43 4.43 0.00 4.52
8 9 6.702723 TGATTTGCTATCAATATTTGGCTTGC 59.297 34.615 0.39 0.00 31.33 4.01
9 10 8.651391 TTGATTTGCTATCAATATTTGGCTTG 57.349 30.769 9.75 0.00 33.55 4.01
10 11 9.841295 AATTGATTTGCTATCAATATTTGGCTT 57.159 25.926 20.52 7.38 45.07 4.35
21 22 9.565090 ACTTAGAGCATAATTGATTTGCTATCA 57.435 29.630 10.94 0.00 46.21 2.15
23 24 9.007901 GGACTTAGAGCATAATTGATTTGCTAT 57.992 33.333 10.94 10.71 46.21 2.97
24 25 8.213679 AGGACTTAGAGCATAATTGATTTGCTA 58.786 33.333 10.94 0.00 46.21 3.49
26 27 7.269477 AGGACTTAGAGCATAATTGATTTGC 57.731 36.000 0.00 0.00 36.63 3.68
27 28 9.330063 TGTAGGACTTAGAGCATAATTGATTTG 57.670 33.333 0.00 0.00 0.00 2.32
28 29 9.331282 GTGTAGGACTTAGAGCATAATTGATTT 57.669 33.333 0.00 0.00 0.00 2.17
29 30 8.709308 AGTGTAGGACTTAGAGCATAATTGATT 58.291 33.333 0.00 0.00 0.00 2.57
30 31 8.256356 AGTGTAGGACTTAGAGCATAATTGAT 57.744 34.615 0.00 0.00 0.00 2.57
31 32 7.661536 AGTGTAGGACTTAGAGCATAATTGA 57.338 36.000 0.00 0.00 0.00 2.57
32 33 7.225538 CCAAGTGTAGGACTTAGAGCATAATTG 59.774 40.741 0.00 0.00 43.52 2.32
33 34 7.275920 CCAAGTGTAGGACTTAGAGCATAATT 58.724 38.462 0.00 0.00 43.52 1.40
34 35 6.686632 GCCAAGTGTAGGACTTAGAGCATAAT 60.687 42.308 0.00 0.00 43.52 1.28
35 36 5.395324 GCCAAGTGTAGGACTTAGAGCATAA 60.395 44.000 0.00 0.00 43.52 1.90
36 37 4.099573 GCCAAGTGTAGGACTTAGAGCATA 59.900 45.833 0.00 0.00 43.52 3.14
37 38 3.118592 GCCAAGTGTAGGACTTAGAGCAT 60.119 47.826 0.00 0.00 43.52 3.79
38 39 2.233922 GCCAAGTGTAGGACTTAGAGCA 59.766 50.000 0.00 0.00 43.52 4.26
39 40 2.233922 TGCCAAGTGTAGGACTTAGAGC 59.766 50.000 0.00 0.00 43.52 4.09
40 41 3.368531 GGTGCCAAGTGTAGGACTTAGAG 60.369 52.174 0.00 0.00 43.52 2.43
41 42 2.565834 GGTGCCAAGTGTAGGACTTAGA 59.434 50.000 0.00 0.00 43.52 2.10
42 43 2.674177 CGGTGCCAAGTGTAGGACTTAG 60.674 54.545 0.00 0.00 43.52 2.18
43 44 1.274167 CGGTGCCAAGTGTAGGACTTA 59.726 52.381 0.00 0.00 43.52 2.24
44 45 0.034896 CGGTGCCAAGTGTAGGACTT 59.965 55.000 0.00 0.00 46.52 3.01
45 46 1.671742 CGGTGCCAAGTGTAGGACT 59.328 57.895 0.00 0.00 35.94 3.85
46 47 1.375523 CCGGTGCCAAGTGTAGGAC 60.376 63.158 0.00 0.00 0.00 3.85
47 48 1.839747 ACCGGTGCCAAGTGTAGGA 60.840 57.895 6.12 0.00 0.00 2.94
48 49 1.671054 CACCGGTGCCAAGTGTAGG 60.671 63.158 24.02 0.00 0.00 3.18
49 50 3.966215 CACCGGTGCCAAGTGTAG 58.034 61.111 24.02 0.00 0.00 2.74
59 60 2.551912 AAAAAGGCGAGCACCGGTG 61.552 57.895 30.66 30.66 39.04 4.94
60 61 2.203294 AAAAAGGCGAGCACCGGT 60.203 55.556 0.00 0.00 39.04 5.28
94 95 1.598132 TGAACGAACATCGCCGAAAAA 59.402 42.857 0.00 0.00 45.12 1.94
95 96 1.193650 CTGAACGAACATCGCCGAAAA 59.806 47.619 0.00 0.00 45.12 2.29
96 97 0.787787 CTGAACGAACATCGCCGAAA 59.212 50.000 0.00 0.00 45.12 3.46
97 98 1.623081 GCTGAACGAACATCGCCGAA 61.623 55.000 0.00 0.00 45.12 4.30
98 99 2.092291 GCTGAACGAACATCGCCGA 61.092 57.895 0.00 0.00 45.12 5.54
99 100 2.395690 GCTGAACGAACATCGCCG 59.604 61.111 0.00 0.00 45.12 6.46
109 110 0.108615 AACATCTCCTCCGCTGAACG 60.109 55.000 0.00 0.00 43.15 3.95
110 111 1.205893 AGAACATCTCCTCCGCTGAAC 59.794 52.381 0.00 0.00 0.00 3.18
111 112 1.478510 GAGAACATCTCCTCCGCTGAA 59.521 52.381 0.00 0.00 37.55 3.02
112 113 1.107114 GAGAACATCTCCTCCGCTGA 58.893 55.000 0.00 0.00 37.55 4.26
113 114 0.820226 TGAGAACATCTCCTCCGCTG 59.180 55.000 5.00 0.00 42.73 5.18
114 115 1.686052 GATGAGAACATCTCCTCCGCT 59.314 52.381 5.00 0.00 46.47 5.52
115 116 2.147436 GATGAGAACATCTCCTCCGC 57.853 55.000 5.00 0.00 46.47 5.54
123 124 3.312973 ACCTCGTAGTCGATGAGAACATC 59.687 47.826 3.90 0.00 43.06 3.06
124 125 3.280295 ACCTCGTAGTCGATGAGAACAT 58.720 45.455 3.90 0.00 43.06 2.71
125 126 2.708051 ACCTCGTAGTCGATGAGAACA 58.292 47.619 3.90 0.00 43.06 3.18
126 127 6.147492 ACATATACCTCGTAGTCGATGAGAAC 59.853 42.308 3.90 0.00 43.06 3.01
127 128 6.147328 CACATATACCTCGTAGTCGATGAGAA 59.853 42.308 3.90 0.00 43.06 2.87
128 129 5.638234 CACATATACCTCGTAGTCGATGAGA 59.362 44.000 3.90 0.00 43.06 3.27
129 130 5.163844 CCACATATACCTCGTAGTCGATGAG 60.164 48.000 0.00 0.00 45.21 2.90
130 131 4.694037 CCACATATACCTCGTAGTCGATGA 59.306 45.833 0.00 0.00 45.21 2.92
131 132 4.454847 ACCACATATACCTCGTAGTCGATG 59.545 45.833 0.00 0.00 45.21 3.84
132 133 4.454847 CACCACATATACCTCGTAGTCGAT 59.545 45.833 0.00 0.00 45.21 3.59
133 134 3.811497 CACCACATATACCTCGTAGTCGA 59.189 47.826 0.00 0.00 44.12 4.20
134 135 3.811497 TCACCACATATACCTCGTAGTCG 59.189 47.826 0.00 0.00 38.55 4.18
135 136 5.961396 ATCACCACATATACCTCGTAGTC 57.039 43.478 0.00 0.00 0.00 2.59
136 137 6.430308 CAGTATCACCACATATACCTCGTAGT 59.570 42.308 0.00 0.00 30.35 2.73
137 138 6.127980 CCAGTATCACCACATATACCTCGTAG 60.128 46.154 0.00 0.00 30.35 3.51
138 139 5.708697 CCAGTATCACCACATATACCTCGTA 59.291 44.000 0.00 0.00 30.35 3.43
139 140 4.523173 CCAGTATCACCACATATACCTCGT 59.477 45.833 0.00 0.00 30.35 4.18
140 141 4.765339 TCCAGTATCACCACATATACCTCG 59.235 45.833 0.00 0.00 30.35 4.63
141 142 6.859112 ATCCAGTATCACCACATATACCTC 57.141 41.667 0.00 0.00 30.35 3.85
142 143 7.633018 AAATCCAGTATCACCACATATACCT 57.367 36.000 0.00 0.00 30.35 3.08
143 144 9.959721 AATAAATCCAGTATCACCACATATACC 57.040 33.333 0.00 0.00 30.35 2.73
177 178 4.979197 CCCATCGAACGAAAATCACAAAAA 59.021 37.500 0.12 0.00 0.00 1.94
178 179 4.276183 TCCCATCGAACGAAAATCACAAAA 59.724 37.500 0.12 0.00 0.00 2.44
179 180 3.815962 TCCCATCGAACGAAAATCACAAA 59.184 39.130 0.12 0.00 0.00 2.83
180 181 3.403968 TCCCATCGAACGAAAATCACAA 58.596 40.909 0.12 0.00 0.00 3.33
181 182 3.046968 TCCCATCGAACGAAAATCACA 57.953 42.857 0.12 0.00 0.00 3.58
182 183 4.413495 TTTCCCATCGAACGAAAATCAC 57.587 40.909 0.12 0.00 0.00 3.06
183 184 5.637006 ATTTTCCCATCGAACGAAAATCA 57.363 34.783 17.76 2.80 40.46 2.57
184 185 7.011828 TCTATTTTCCCATCGAACGAAAATC 57.988 36.000 22.95 0.00 42.37 2.17
185 186 6.995511 TCTATTTTCCCATCGAACGAAAAT 57.004 33.333 22.89 22.89 44.36 1.82
186 187 6.995511 ATCTATTTTCCCATCGAACGAAAA 57.004 33.333 15.60 15.60 39.19 2.29
187 188 6.821665 AGAATCTATTTTCCCATCGAACGAAA 59.178 34.615 0.12 0.00 0.00 3.46
188 189 6.346096 AGAATCTATTTTCCCATCGAACGAA 58.654 36.000 0.12 0.00 0.00 3.85
189 190 5.914033 AGAATCTATTTTCCCATCGAACGA 58.086 37.500 0.00 0.00 0.00 3.85
190 191 5.753438 TGAGAATCTATTTTCCCATCGAACG 59.247 40.000 0.00 0.00 34.92 3.95
191 192 7.736447 ATGAGAATCTATTTTCCCATCGAAC 57.264 36.000 0.00 0.00 34.92 3.95
192 193 8.870116 TCTATGAGAATCTATTTTCCCATCGAA 58.130 33.333 0.00 0.00 34.92 3.71
193 194 8.307483 GTCTATGAGAATCTATTTTCCCATCGA 58.693 37.037 0.00 0.00 34.92 3.59
194 195 8.310382 AGTCTATGAGAATCTATTTTCCCATCG 58.690 37.037 0.00 0.00 34.92 3.84
197 198 8.577296 CGTAGTCTATGAGAATCTATTTTCCCA 58.423 37.037 0.00 0.00 34.92 4.37
198 199 8.794553 TCGTAGTCTATGAGAATCTATTTTCCC 58.205 37.037 0.00 0.00 34.92 3.97
205 206 9.562408 AGATGTTTCGTAGTCTATGAGAATCTA 57.438 33.333 15.14 0.00 34.92 1.98
206 207 8.349245 CAGATGTTTCGTAGTCTATGAGAATCT 58.651 37.037 12.85 12.85 34.92 2.40
207 208 8.132362 ACAGATGTTTCGTAGTCTATGAGAATC 58.868 37.037 2.09 7.08 0.00 2.52
208 209 8.001881 ACAGATGTTTCGTAGTCTATGAGAAT 57.998 34.615 2.09 0.00 0.00 2.40
209 210 7.392494 ACAGATGTTTCGTAGTCTATGAGAA 57.608 36.000 2.09 0.00 0.00 2.87
210 211 7.392494 AACAGATGTTTCGTAGTCTATGAGA 57.608 36.000 2.09 0.00 33.93 3.27
211 212 9.737427 ATTAACAGATGTTTCGTAGTCTATGAG 57.263 33.333 3.14 0.00 39.31 2.90
215 216 9.069078 CGAAATTAACAGATGTTTCGTAGTCTA 57.931 33.333 3.14 0.00 44.51 2.59
216 217 7.950236 CGAAATTAACAGATGTTTCGTAGTCT 58.050 34.615 3.14 0.00 44.51 3.24
237 238 9.279904 CGGCACAATATTTTAGAATTAACGAAA 57.720 29.630 0.00 0.00 0.00 3.46
238 239 7.911205 CCGGCACAATATTTTAGAATTAACGAA 59.089 33.333 0.00 0.00 0.00 3.85
239 240 7.066043 ACCGGCACAATATTTTAGAATTAACGA 59.934 33.333 0.00 0.00 0.00 3.85
240 241 7.190871 ACCGGCACAATATTTTAGAATTAACG 58.809 34.615 0.00 0.00 0.00 3.18
241 242 8.920509 AACCGGCACAATATTTTAGAATTAAC 57.079 30.769 0.00 0.00 0.00 2.01
244 245 8.962679 TCTAAACCGGCACAATATTTTAGAATT 58.037 29.630 14.02 0.00 34.30 2.17
245 246 8.514330 TCTAAACCGGCACAATATTTTAGAAT 57.486 30.769 14.02 0.00 34.30 2.40
246 247 7.925043 TCTAAACCGGCACAATATTTTAGAA 57.075 32.000 14.02 2.86 34.30 2.10
247 248 7.925043 TTCTAAACCGGCACAATATTTTAGA 57.075 32.000 12.92 12.92 35.02 2.10
248 249 8.621286 AGATTCTAAACCGGCACAATATTTTAG 58.379 33.333 0.00 5.98 0.00 1.85
249 250 8.514330 AGATTCTAAACCGGCACAATATTTTA 57.486 30.769 0.00 0.00 0.00 1.52
250 251 7.404671 AGATTCTAAACCGGCACAATATTTT 57.595 32.000 0.00 0.00 0.00 1.82
251 252 7.093945 ACAAGATTCTAAACCGGCACAATATTT 60.094 33.333 0.00 0.00 0.00 1.40
252 253 6.377146 ACAAGATTCTAAACCGGCACAATATT 59.623 34.615 0.00 0.00 0.00 1.28
253 254 5.885912 ACAAGATTCTAAACCGGCACAATAT 59.114 36.000 0.00 0.00 0.00 1.28
254 255 5.250200 ACAAGATTCTAAACCGGCACAATA 58.750 37.500 0.00 0.00 0.00 1.90
255 256 4.079253 ACAAGATTCTAAACCGGCACAAT 58.921 39.130 0.00 0.00 0.00 2.71
256 257 3.482436 ACAAGATTCTAAACCGGCACAA 58.518 40.909 0.00 0.00 0.00 3.33
257 258 3.134574 ACAAGATTCTAAACCGGCACA 57.865 42.857 0.00 0.00 0.00 4.57
258 259 4.035208 CCATACAAGATTCTAAACCGGCAC 59.965 45.833 0.00 0.00 0.00 5.01
259 260 4.196193 CCATACAAGATTCTAAACCGGCA 58.804 43.478 0.00 0.00 0.00 5.69
260 261 3.564225 CCCATACAAGATTCTAAACCGGC 59.436 47.826 0.00 0.00 0.00 6.13
261 262 4.574828 CACCCATACAAGATTCTAAACCGG 59.425 45.833 0.00 0.00 0.00 5.28
262 263 5.424757 TCACCCATACAAGATTCTAAACCG 58.575 41.667 0.00 0.00 0.00 4.44
263 264 6.318900 CCTTCACCCATACAAGATTCTAAACC 59.681 42.308 0.00 0.00 0.00 3.27
264 265 6.884836 ACCTTCACCCATACAAGATTCTAAAC 59.115 38.462 0.00 0.00 0.00 2.01
265 266 7.027874 ACCTTCACCCATACAAGATTCTAAA 57.972 36.000 0.00 0.00 0.00 1.85
266 267 6.636454 ACCTTCACCCATACAAGATTCTAA 57.364 37.500 0.00 0.00 0.00 2.10
267 268 7.743116 TTACCTTCACCCATACAAGATTCTA 57.257 36.000 0.00 0.00 0.00 2.10
268 269 6.636454 TTACCTTCACCCATACAAGATTCT 57.364 37.500 0.00 0.00 0.00 2.40
269 270 7.610305 TCTTTTACCTTCACCCATACAAGATTC 59.390 37.037 0.00 0.00 0.00 2.52
270 271 7.466804 TCTTTTACCTTCACCCATACAAGATT 58.533 34.615 0.00 0.00 0.00 2.40
271 272 7.027874 TCTTTTACCTTCACCCATACAAGAT 57.972 36.000 0.00 0.00 0.00 2.40
272 273 6.442541 TCTTTTACCTTCACCCATACAAGA 57.557 37.500 0.00 0.00 0.00 3.02
273 274 6.659242 ACATCTTTTACCTTCACCCATACAAG 59.341 38.462 0.00 0.00 0.00 3.16
274 275 6.432783 CACATCTTTTACCTTCACCCATACAA 59.567 38.462 0.00 0.00 0.00 2.41
275 276 5.943416 CACATCTTTTACCTTCACCCATACA 59.057 40.000 0.00 0.00 0.00 2.29
276 277 5.944007 ACACATCTTTTACCTTCACCCATAC 59.056 40.000 0.00 0.00 0.00 2.39
277 278 5.943416 CACACATCTTTTACCTTCACCCATA 59.057 40.000 0.00 0.00 0.00 2.74
278 279 4.766891 CACACATCTTTTACCTTCACCCAT 59.233 41.667 0.00 0.00 0.00 4.00
279 280 4.141287 CACACATCTTTTACCTTCACCCA 58.859 43.478 0.00 0.00 0.00 4.51
280 281 3.057526 GCACACATCTTTTACCTTCACCC 60.058 47.826 0.00 0.00 0.00 4.61
281 282 3.364964 CGCACACATCTTTTACCTTCACC 60.365 47.826 0.00 0.00 0.00 4.02
282 283 3.250040 ACGCACACATCTTTTACCTTCAC 59.750 43.478 0.00 0.00 0.00 3.18
283 284 3.249799 CACGCACACATCTTTTACCTTCA 59.750 43.478 0.00 0.00 0.00 3.02
284 285 3.810373 CACGCACACATCTTTTACCTTC 58.190 45.455 0.00 0.00 0.00 3.46
285 286 2.031157 GCACGCACACATCTTTTACCTT 60.031 45.455 0.00 0.00 0.00 3.50
286 287 1.535462 GCACGCACACATCTTTTACCT 59.465 47.619 0.00 0.00 0.00 3.08
287 288 1.265635 TGCACGCACACATCTTTTACC 59.734 47.619 0.00 0.00 0.00 2.85
288 289 2.679355 TGCACGCACACATCTTTTAC 57.321 45.000 0.00 0.00 0.00 2.01
289 290 3.913548 AATGCACGCACACATCTTTTA 57.086 38.095 0.00 0.00 0.00 1.52
290 291 2.798976 AATGCACGCACACATCTTTT 57.201 40.000 0.00 0.00 0.00 2.27
291 292 2.798976 AAATGCACGCACACATCTTT 57.201 40.000 0.00 0.00 0.00 2.52
292 293 4.035558 CCTATAAATGCACGCACACATCTT 59.964 41.667 0.00 0.00 0.00 2.40
293 294 3.561310 CCTATAAATGCACGCACACATCT 59.439 43.478 0.00 0.00 0.00 2.90
294 295 3.849645 GCCTATAAATGCACGCACACATC 60.850 47.826 0.00 0.00 0.00 3.06
295 296 2.033299 GCCTATAAATGCACGCACACAT 59.967 45.455 0.00 0.00 0.00 3.21
296 297 1.400142 GCCTATAAATGCACGCACACA 59.600 47.619 0.00 0.00 0.00 3.72
297 298 1.400142 TGCCTATAAATGCACGCACAC 59.600 47.619 0.00 0.00 31.31 3.82
298 299 1.743996 TGCCTATAAATGCACGCACA 58.256 45.000 0.00 0.00 31.31 4.57
299 300 2.350772 GGATGCCTATAAATGCACGCAC 60.351 50.000 0.00 0.00 40.88 5.34
300 301 1.879380 GGATGCCTATAAATGCACGCA 59.121 47.619 0.00 0.00 40.88 5.24
301 302 1.879380 TGGATGCCTATAAATGCACGC 59.121 47.619 0.00 0.00 40.88 5.34
302 303 3.187227 GTCTGGATGCCTATAAATGCACG 59.813 47.826 0.00 0.00 40.88 5.34
303 304 4.214971 CAGTCTGGATGCCTATAAATGCAC 59.785 45.833 0.00 0.00 40.88 4.57
304 305 4.141413 ACAGTCTGGATGCCTATAAATGCA 60.141 41.667 4.53 0.00 42.52 3.96
305 306 4.392940 ACAGTCTGGATGCCTATAAATGC 58.607 43.478 4.53 0.00 0.00 3.56
306 307 5.641209 GCTACAGTCTGGATGCCTATAAATG 59.359 44.000 4.53 0.00 0.00 2.32
307 308 5.545723 AGCTACAGTCTGGATGCCTATAAAT 59.454 40.000 4.53 0.00 0.00 1.40
308 309 4.901849 AGCTACAGTCTGGATGCCTATAAA 59.098 41.667 4.53 0.00 0.00 1.40
309 310 4.483950 AGCTACAGTCTGGATGCCTATAA 58.516 43.478 4.53 0.00 0.00 0.98
310 311 4.119556 AGCTACAGTCTGGATGCCTATA 57.880 45.455 4.53 0.00 0.00 1.31
311 312 2.969628 AGCTACAGTCTGGATGCCTAT 58.030 47.619 4.53 0.00 0.00 2.57
312 313 2.461300 AGCTACAGTCTGGATGCCTA 57.539 50.000 4.53 0.00 0.00 3.93
313 314 2.315176 CTAGCTACAGTCTGGATGCCT 58.685 52.381 4.53 0.00 0.00 4.75
314 315 2.035321 GACTAGCTACAGTCTGGATGCC 59.965 54.545 9.06 0.00 41.49 4.40
315 316 2.690497 TGACTAGCTACAGTCTGGATGC 59.310 50.000 15.87 5.43 44.41 3.91
316 317 4.203226 TCTGACTAGCTACAGTCTGGATG 58.797 47.826 18.24 6.05 44.41 3.51
317 318 4.511786 TCTGACTAGCTACAGTCTGGAT 57.488 45.455 18.24 0.00 44.41 3.41
318 319 4.080299 TCATCTGACTAGCTACAGTCTGGA 60.080 45.833 18.24 15.00 44.41 3.86
319 320 4.203226 TCATCTGACTAGCTACAGTCTGG 58.797 47.826 18.24 11.43 44.41 3.86
320 321 5.826601 TTCATCTGACTAGCTACAGTCTG 57.173 43.478 15.87 15.05 44.41 3.51
321 322 5.301551 CCATTCATCTGACTAGCTACAGTCT 59.698 44.000 15.87 2.11 44.41 3.24
322 323 5.527951 CCATTCATCTGACTAGCTACAGTC 58.472 45.833 9.35 9.35 44.37 3.51
323 324 4.202202 GCCATTCATCTGACTAGCTACAGT 60.202 45.833 10.28 0.16 35.84 3.55
324 325 4.039004 AGCCATTCATCTGACTAGCTACAG 59.961 45.833 5.24 5.24 35.72 2.74
325 326 3.963374 AGCCATTCATCTGACTAGCTACA 59.037 43.478 0.00 0.00 0.00 2.74
326 327 4.555262 GAGCCATTCATCTGACTAGCTAC 58.445 47.826 0.00 0.00 0.00 3.58
327 328 3.254411 CGAGCCATTCATCTGACTAGCTA 59.746 47.826 0.00 0.00 0.00 3.32
328 329 2.035704 CGAGCCATTCATCTGACTAGCT 59.964 50.000 0.00 0.00 0.00 3.32
329 330 2.402305 CGAGCCATTCATCTGACTAGC 58.598 52.381 0.00 0.00 0.00 3.42
330 331 2.035704 AGCGAGCCATTCATCTGACTAG 59.964 50.000 0.00 0.00 0.00 2.57
331 332 2.034878 AGCGAGCCATTCATCTGACTA 58.965 47.619 0.00 0.00 0.00 2.59
332 333 0.829333 AGCGAGCCATTCATCTGACT 59.171 50.000 0.00 0.00 0.00 3.41
333 334 1.216122 GAGCGAGCCATTCATCTGAC 58.784 55.000 0.00 0.00 0.00 3.51
334 335 0.105593 GGAGCGAGCCATTCATCTGA 59.894 55.000 0.00 0.00 0.00 3.27
335 336 1.220169 CGGAGCGAGCCATTCATCTG 61.220 60.000 0.00 0.00 0.00 2.90
336 337 1.068753 CGGAGCGAGCCATTCATCT 59.931 57.895 0.00 0.00 0.00 2.90
337 338 0.811616 AACGGAGCGAGCCATTCATC 60.812 55.000 0.00 0.00 0.00 2.92
338 339 1.091771 CAACGGAGCGAGCCATTCAT 61.092 55.000 0.00 0.00 0.00 2.57
339 340 1.741401 CAACGGAGCGAGCCATTCA 60.741 57.895 0.00 0.00 0.00 2.57
340 341 2.464459 CCAACGGAGCGAGCCATTC 61.464 63.158 0.00 0.00 0.00 2.67
341 342 2.436646 CCAACGGAGCGAGCCATT 60.437 61.111 0.00 0.00 0.00 3.16
342 343 4.473520 CCCAACGGAGCGAGCCAT 62.474 66.667 0.00 0.00 0.00 4.40
350 351 2.663196 GGACAGGTCCCAACGGAG 59.337 66.667 7.24 0.00 43.94 4.63
359 360 0.250467 ACTGCACATGTGGACAGGTC 60.250 55.000 26.95 12.51 39.00 3.85
360 361 0.183492 AACTGCACATGTGGACAGGT 59.817 50.000 26.95 21.95 42.05 4.00
361 362 0.594602 CAACTGCACATGTGGACAGG 59.405 55.000 26.95 17.22 34.40 4.00
362 363 0.039798 GCAACTGCACATGTGGACAG 60.040 55.000 26.55 24.98 41.59 3.51
363 364 2.032170 GCAACTGCACATGTGGACA 58.968 52.632 26.55 15.77 41.59 4.02
364 365 4.950744 GCAACTGCACATGTGGAC 57.049 55.556 26.55 11.90 41.59 4.02
399 400 7.065085 GGACTAAATAAAAACGGAGGAAGTACC 59.935 40.741 0.00 0.00 39.35 3.34
400 401 7.201470 CGGACTAAATAAAAACGGAGGAAGTAC 60.201 40.741 0.00 0.00 0.00 2.73
401 402 6.813152 CGGACTAAATAAAAACGGAGGAAGTA 59.187 38.462 0.00 0.00 0.00 2.24
402 403 5.640783 CGGACTAAATAAAAACGGAGGAAGT 59.359 40.000 0.00 0.00 0.00 3.01
403 404 5.446875 GCGGACTAAATAAAAACGGAGGAAG 60.447 44.000 0.00 0.00 0.00 3.46
404 405 4.392754 GCGGACTAAATAAAAACGGAGGAA 59.607 41.667 0.00 0.00 0.00 3.36
405 406 3.934579 GCGGACTAAATAAAAACGGAGGA 59.065 43.478 0.00 0.00 0.00 3.71
406 407 3.064408 GGCGGACTAAATAAAAACGGAGG 59.936 47.826 0.00 0.00 0.00 4.30
407 408 3.937079 AGGCGGACTAAATAAAAACGGAG 59.063 43.478 0.00 0.00 0.00 4.63
408 409 3.941573 AGGCGGACTAAATAAAAACGGA 58.058 40.909 0.00 0.00 0.00 4.69
409 410 5.996669 ATAGGCGGACTAAATAAAAACGG 57.003 39.130 0.00 0.00 34.79 4.44
410 411 8.134905 ACTAATAGGCGGACTAAATAAAAACG 57.865 34.615 0.00 0.00 34.79 3.60
414 415 9.669887 TCAAAACTAATAGGCGGACTAAATAAA 57.330 29.630 0.00 0.00 34.79 1.40
415 416 9.841295 ATCAAAACTAATAGGCGGACTAAATAA 57.159 29.630 0.00 0.00 34.79 1.40
416 417 9.485206 GATCAAAACTAATAGGCGGACTAAATA 57.515 33.333 0.00 0.00 34.79 1.40
417 418 7.990886 TGATCAAAACTAATAGGCGGACTAAAT 59.009 33.333 0.00 0.00 34.79 1.40
418 419 7.332557 TGATCAAAACTAATAGGCGGACTAAA 58.667 34.615 0.00 0.00 34.79 1.85
419 420 6.880484 TGATCAAAACTAATAGGCGGACTAA 58.120 36.000 0.00 0.00 34.79 2.24
420 421 6.474140 TGATCAAAACTAATAGGCGGACTA 57.526 37.500 0.00 0.00 35.80 2.59
421 422 5.353394 TGATCAAAACTAATAGGCGGACT 57.647 39.130 0.00 0.00 0.00 3.85
422 423 6.431198 TTTGATCAAAACTAATAGGCGGAC 57.569 37.500 18.45 0.00 0.00 4.79
423 424 5.588648 CCTTTGATCAAAACTAATAGGCGGA 59.411 40.000 20.82 0.00 0.00 5.54
424 425 5.357032 ACCTTTGATCAAAACTAATAGGCGG 59.643 40.000 20.82 15.81 0.00 6.13
425 426 6.436843 ACCTTTGATCAAAACTAATAGGCG 57.563 37.500 20.82 6.13 0.00 5.52
426 427 7.915923 GCTTACCTTTGATCAAAACTAATAGGC 59.084 37.037 20.82 15.17 0.00 3.93
427 428 8.122952 CGCTTACCTTTGATCAAAACTAATAGG 58.877 37.037 20.82 17.89 0.00 2.57
428 429 8.665685 ACGCTTACCTTTGATCAAAACTAATAG 58.334 33.333 20.82 13.76 0.00 1.73
429 430 8.556213 ACGCTTACCTTTGATCAAAACTAATA 57.444 30.769 20.82 7.23 0.00 0.98
430 431 7.448748 ACGCTTACCTTTGATCAAAACTAAT 57.551 32.000 20.82 8.08 0.00 1.73
431 432 6.870971 ACGCTTACCTTTGATCAAAACTAA 57.129 33.333 20.82 16.21 0.00 2.24
432 433 6.483974 TCAACGCTTACCTTTGATCAAAACTA 59.516 34.615 20.82 10.53 27.95 2.24
433 434 5.298276 TCAACGCTTACCTTTGATCAAAACT 59.702 36.000 20.82 11.44 27.95 2.66
434 435 5.516090 TCAACGCTTACCTTTGATCAAAAC 58.484 37.500 20.82 6.62 27.95 2.43
435 436 5.759506 TCAACGCTTACCTTTGATCAAAA 57.240 34.783 20.82 4.71 27.95 2.44
436 437 5.759506 TTCAACGCTTACCTTTGATCAAA 57.240 34.783 19.45 19.45 32.54 2.69
437 438 5.298276 AGTTTCAACGCTTACCTTTGATCAA 59.702 36.000 3.38 3.38 32.54 2.57
438 439 4.819630 AGTTTCAACGCTTACCTTTGATCA 59.180 37.500 0.00 0.00 32.54 2.92
439 440 5.358298 AGTTTCAACGCTTACCTTTGATC 57.642 39.130 0.00 0.00 32.54 2.92
440 441 5.767816 AAGTTTCAACGCTTACCTTTGAT 57.232 34.783 0.00 0.00 32.54 2.57
441 442 5.124138 TCAAAGTTTCAACGCTTACCTTTGA 59.876 36.000 7.59 7.59 36.40 2.69
442 443 5.336744 TCAAAGTTTCAACGCTTACCTTTG 58.663 37.500 0.00 0.00 0.00 2.77
443 444 5.570234 TCAAAGTTTCAACGCTTACCTTT 57.430 34.783 0.00 0.00 0.00 3.11
444 445 5.767816 ATCAAAGTTTCAACGCTTACCTT 57.232 34.783 0.00 0.00 0.00 3.50
445 446 6.870971 TTATCAAAGTTTCAACGCTTACCT 57.129 33.333 0.00 0.00 0.00 3.08
446 447 7.548673 CTTTATCAAAGTTTCAACGCTTACC 57.451 36.000 0.00 0.00 33.80 2.85
482 483 9.939802 GGACGGAGGAAGTATATGTTAATATTT 57.060 33.333 0.00 0.00 31.27 1.40
483 484 9.096823 TGGACGGAGGAAGTATATGTTAATATT 57.903 33.333 0.00 0.00 31.27 1.28
484 485 8.660295 TGGACGGAGGAAGTATATGTTAATAT 57.340 34.615 0.00 0.00 33.44 1.28
485 486 8.481492 TTGGACGGAGGAAGTATATGTTAATA 57.519 34.615 0.00 0.00 0.00 0.98
486 487 6.989155 TGGACGGAGGAAGTATATGTTAAT 57.011 37.500 0.00 0.00 0.00 1.40
487 488 6.795144 TTGGACGGAGGAAGTATATGTTAA 57.205 37.500 0.00 0.00 0.00 2.01
488 489 6.795144 TTTGGACGGAGGAAGTATATGTTA 57.205 37.500 0.00 0.00 0.00 2.41
489 490 5.687166 TTTGGACGGAGGAAGTATATGTT 57.313 39.130 0.00 0.00 0.00 2.71
490 491 5.687166 TTTTGGACGGAGGAAGTATATGT 57.313 39.130 0.00 0.00 0.00 2.29
491 492 7.931948 AGTATTTTTGGACGGAGGAAGTATATG 59.068 37.037 0.00 0.00 0.00 1.78
492 493 8.030913 AGTATTTTTGGACGGAGGAAGTATAT 57.969 34.615 0.00 0.00 0.00 0.86
493 494 7.427989 AGTATTTTTGGACGGAGGAAGTATA 57.572 36.000 0.00 0.00 0.00 1.47
494 495 6.309389 AGTATTTTTGGACGGAGGAAGTAT 57.691 37.500 0.00 0.00 0.00 2.12
495 496 5.750352 AGTATTTTTGGACGGAGGAAGTA 57.250 39.130 0.00 0.00 0.00 2.24
496 497 4.635699 AGTATTTTTGGACGGAGGAAGT 57.364 40.909 0.00 0.00 0.00 3.01
497 498 4.760204 ACAAGTATTTTTGGACGGAGGAAG 59.240 41.667 0.00 0.00 32.32 3.46
498 499 4.721132 ACAAGTATTTTTGGACGGAGGAA 58.279 39.130 0.00 0.00 32.32 3.36
499 500 4.202377 TGACAAGTATTTTTGGACGGAGGA 60.202 41.667 0.00 0.00 32.32 3.71
500 501 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
501 502 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
502 503 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
503 504 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
504 505 7.357206 CGTTTTGATGACAAGTATTTTTGGACG 60.357 37.037 0.00 0.00 37.32 4.79
505 506 7.096230 CCGTTTTGATGACAAGTATTTTTGGAC 60.096 37.037 0.00 0.00 37.32 4.02
506 507 6.920758 CCGTTTTGATGACAAGTATTTTTGGA 59.079 34.615 0.00 0.00 37.32 3.53
507 508 6.920758 TCCGTTTTGATGACAAGTATTTTTGG 59.079 34.615 0.00 0.00 37.32 3.28
508 509 7.922505 TCCGTTTTGATGACAAGTATTTTTG 57.077 32.000 0.00 0.00 37.32 2.44
584 585 9.834628 GTCCGAAAATACTTGTCATCAAAATAA 57.165 29.630 0.00 0.00 32.87 1.40
585 586 8.172484 CGTCCGAAAATACTTGTCATCAAAATA 58.828 33.333 0.00 0.00 32.87 1.40
586 587 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
587 588 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
588 589 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
589 590 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
590 591 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
591 592 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
592 593 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
593 594 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
594 595 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
595 596 2.564062 TCCTCCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
596 597 3.241067 TCCTCCGTCCGAAAATACTTG 57.759 47.619 0.00 0.00 0.00 3.16
597 598 3.260128 ACTTCCTCCGTCCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
598 599 2.830321 ACTTCCTCCGTCCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
599 600 3.242549 ACTTCCTCCGTCCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
600 601 4.019174 AGTACTTCCTCCGTCCGAAAATA 58.981 43.478 0.00 0.00 0.00 1.40
601 602 2.830321 AGTACTTCCTCCGTCCGAAAAT 59.170 45.455 0.00 0.00 0.00 1.82
602 603 2.242043 AGTACTTCCTCCGTCCGAAAA 58.758 47.619 0.00 0.00 0.00 2.29
603 604 1.915141 AGTACTTCCTCCGTCCGAAA 58.085 50.000 0.00 0.00 0.00 3.46
604 605 2.787473 TAGTACTTCCTCCGTCCGAA 57.213 50.000 0.00 0.00 0.00 4.30
605 606 3.389329 AGTATAGTACTTCCTCCGTCCGA 59.611 47.826 0.00 0.00 34.86 4.55
606 607 3.737850 AGTATAGTACTTCCTCCGTCCG 58.262 50.000 0.00 0.00 34.86 4.79
744 745 8.427276 ATCTGCATATAGATTTGACAGAAGTCA 58.573 33.333 0.00 0.00 42.11 3.41
745 746 8.830201 ATCTGCATATAGATTTGACAGAAGTC 57.170 34.615 0.00 0.00 38.46 3.01
761 762 9.965824 CCTTCCGTTTTTATTTAATCTGCATAT 57.034 29.630 0.00 0.00 0.00 1.78
762 763 9.179909 TCCTTCCGTTTTTATTTAATCTGCATA 57.820 29.630 0.00 0.00 0.00 3.14
763 764 8.062065 TCCTTCCGTTTTTATTTAATCTGCAT 57.938 30.769 0.00 0.00 0.00 3.96
764 765 7.175990 ACTCCTTCCGTTTTTATTTAATCTGCA 59.824 33.333 0.00 0.00 0.00 4.41
765 766 7.535997 ACTCCTTCCGTTTTTATTTAATCTGC 58.464 34.615 0.00 0.00 0.00 4.26
771 772 9.287373 ACAACATACTCCTTCCGTTTTTATTTA 57.713 29.630 0.00 0.00 0.00 1.40
772 773 8.173542 ACAACATACTCCTTCCGTTTTTATTT 57.826 30.769 0.00 0.00 0.00 1.40
773 774 7.754851 ACAACATACTCCTTCCGTTTTTATT 57.245 32.000 0.00 0.00 0.00 1.40
774 775 7.590279 CAACAACATACTCCTTCCGTTTTTAT 58.410 34.615 0.00 0.00 0.00 1.40
775 776 6.513720 GCAACAACATACTCCTTCCGTTTTTA 60.514 38.462 0.00 0.00 0.00 1.52
776 777 5.735070 GCAACAACATACTCCTTCCGTTTTT 60.735 40.000 0.00 0.00 0.00 1.94
777 778 4.261447 GCAACAACATACTCCTTCCGTTTT 60.261 41.667 0.00 0.00 0.00 2.43
778 779 3.252458 GCAACAACATACTCCTTCCGTTT 59.748 43.478 0.00 0.00 0.00 3.60
779 780 2.812011 GCAACAACATACTCCTTCCGTT 59.188 45.455 0.00 0.00 0.00 4.44
780 781 2.224426 TGCAACAACATACTCCTTCCGT 60.224 45.455 0.00 0.00 0.00 4.69
781 782 2.422597 TGCAACAACATACTCCTTCCG 58.577 47.619 0.00 0.00 0.00 4.30
782 783 4.846779 TTTGCAACAACATACTCCTTCC 57.153 40.909 0.00 0.00 0.00 3.46
783 784 6.144402 CACATTTTGCAACAACATACTCCTTC 59.856 38.462 0.00 0.00 0.00 3.46
784 785 5.984926 CACATTTTGCAACAACATACTCCTT 59.015 36.000 0.00 0.00 0.00 3.36
785 786 5.068987 ACACATTTTGCAACAACATACTCCT 59.931 36.000 0.00 0.00 0.00 3.69
786 787 5.288804 ACACATTTTGCAACAACATACTCC 58.711 37.500 0.00 0.00 0.00 3.85
787 788 6.208644 AGACACATTTTGCAACAACATACTC 58.791 36.000 0.00 0.00 0.00 2.59
788 789 6.147864 AGACACATTTTGCAACAACATACT 57.852 33.333 0.00 0.00 0.00 2.12
789 790 7.594758 ACATAGACACATTTTGCAACAACATAC 59.405 33.333 0.00 0.00 0.00 2.39
790 791 7.656412 ACATAGACACATTTTGCAACAACATA 58.344 30.769 0.00 0.00 0.00 2.29
791 792 6.514947 ACATAGACACATTTTGCAACAACAT 58.485 32.000 0.00 0.00 0.00 2.71
792 793 5.900425 ACATAGACACATTTTGCAACAACA 58.100 33.333 0.00 0.00 0.00 3.33
793 794 6.915300 TGTACATAGACACATTTTGCAACAAC 59.085 34.615 0.00 0.00 0.00 3.32
821 822 4.848685 GGTCATGCCGGTCGTTAT 57.151 55.556 1.90 0.00 0.00 1.89
838 839 2.321060 GAACGATGCCGACATGCG 59.679 61.111 0.00 0.00 36.35 4.73
839 840 2.040213 CTGGAACGATGCCGACATGC 62.040 60.000 0.00 0.00 36.35 4.06
840 841 0.460109 TCTGGAACGATGCCGACATG 60.460 55.000 0.00 0.00 36.35 3.21
841 842 0.249120 TTCTGGAACGATGCCGACAT 59.751 50.000 0.00 0.00 39.98 3.06
842 843 0.669318 GTTCTGGAACGATGCCGACA 60.669 55.000 0.00 0.00 39.50 4.35
843 844 2.079049 GTTCTGGAACGATGCCGAC 58.921 57.895 0.00 0.00 39.50 4.79
844 845 4.590487 GTTCTGGAACGATGCCGA 57.410 55.556 0.00 0.00 39.50 5.54
882 890 3.869473 GAACGCGGTGTAGGTGCCA 62.869 63.158 12.47 0.00 0.00 4.92
959 967 2.671396 AGTAAATGTGGATTCGACACGC 59.329 45.455 3.46 0.00 41.64 5.34
1012 1020 4.394712 CGAGCGGCAGGGGAAAGT 62.395 66.667 1.45 0.00 0.00 2.66
1176 1199 0.322277 CTTGGCCTGCTCACATGACT 60.322 55.000 3.32 0.00 0.00 3.41
1193 1216 1.327690 TAGATTCTGCGCCGGGACTT 61.328 55.000 4.18 0.00 0.00 3.01
1198 1222 4.018609 CAGTAGATTCTGCGCCGG 57.981 61.111 4.18 0.00 0.00 6.13
1253 1277 5.402867 ACACCAAGTTAAAAACAACACAACG 59.597 36.000 0.00 0.00 0.00 4.10
1399 1423 4.023739 TGCAATGCAATTTGATCTCTCG 57.976 40.909 5.01 0.00 34.76 4.04
1642 1695 8.621286 ACCATTAGATTTCATTCGGATGTAAAC 58.379 33.333 3.00 0.00 34.77 2.01
1649 1702 6.884295 AGAAACACCATTAGATTTCATTCGGA 59.116 34.615 0.00 0.00 34.22 4.55
1652 1705 9.780413 GAGAAGAAACACCATTAGATTTCATTC 57.220 33.333 0.00 0.00 34.22 2.67
1669 1722 2.306847 TGCAAACCCTGGAGAAGAAAC 58.693 47.619 0.00 0.00 0.00 2.78
1676 1749 1.610522 CTTGTCTTGCAAACCCTGGAG 59.389 52.381 0.00 0.00 36.53 3.86
1791 1864 5.355071 AGTGTTAAGATATCGTACACGTGGA 59.645 40.000 21.57 9.00 40.80 4.02
1797 1870 8.301720 ACTGAAACAGTGTTAAGATATCGTACA 58.698 33.333 20.07 1.30 43.63 2.90
1851 4479 3.751518 AGGCACCTGTCGAAAATAAGTT 58.248 40.909 0.00 0.00 0.00 2.66
1852 4480 3.418684 AGGCACCTGTCGAAAATAAGT 57.581 42.857 0.00 0.00 0.00 2.24
1856 4484 1.880027 GTGAAGGCACCTGTCGAAAAT 59.120 47.619 0.00 0.00 39.14 1.82
1862 4498 0.321122 CTCCAGTGAAGGCACCTGTC 60.321 60.000 0.00 0.00 46.32 3.51
2095 4747 8.414003 AGTATAGTGCTTTATTGAACTCATCGA 58.586 33.333 0.00 0.00 0.00 3.59
2167 4819 2.099921 AGTTACAGGTATCGCTCTGCTG 59.900 50.000 0.00 0.00 34.57 4.41
2211 4863 6.642707 TTTTTGTGACAAGTAATTCCGGAT 57.357 33.333 4.15 0.00 0.00 4.18
2219 4871 9.295825 AGATACATCCATTTTTGTGACAAGTAA 57.704 29.630 0.00 0.00 0.00 2.24
2222 4874 8.729756 TGTAGATACATCCATTTTTGTGACAAG 58.270 33.333 0.00 0.00 0.00 3.16
2223 4875 8.628630 TGTAGATACATCCATTTTTGTGACAA 57.371 30.769 0.00 0.00 0.00 3.18
2224 4876 8.511321 GTTGTAGATACATCCATTTTTGTGACA 58.489 33.333 0.00 0.00 35.89 3.58
2264 5301 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
2266 5303 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
2268 5305 7.189512 GGAATTACTCGTCCAAGAAATGAATG 58.810 38.462 0.00 0.00 33.79 2.67
2270 5307 5.350365 CGGAATTACTCGTCCAAGAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
2271 5308 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
2272 5309 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
2273 5310 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
2274 5311 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
2275 5312 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
2276 5313 3.671433 CGTTCGGAATTACTCGTCCAAGA 60.671 47.826 0.00 0.00 33.10 3.02
2278 5315 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
2279 5316 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
2280 5317 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
2282 5319 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
2284 5321 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
2285 5322 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2286 5323 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2287 5324 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2289 5326 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
2293 5330 4.097589 AGAACTTATTACTCCCTCCGTTCG 59.902 45.833 0.00 0.00 35.82 3.95
2294 5331 5.595257 AGAACTTATTACTCCCTCCGTTC 57.405 43.478 0.00 0.00 0.00 3.95
2296 5333 5.513233 TGTAGAACTTATTACTCCCTCCGT 58.487 41.667 0.00 0.00 0.00 4.69
2297 5334 5.009811 CCTGTAGAACTTATTACTCCCTCCG 59.990 48.000 0.00 0.00 0.00 4.63
2298 5335 5.221481 GCCTGTAGAACTTATTACTCCCTCC 60.221 48.000 0.00 0.00 0.00 4.30
2459 7307 4.325084 TTTAAAGGATTCCCGGATTGGT 57.675 40.909 0.73 0.00 37.58 3.67
2524 7372 1.069022 CCACCTGTGCAGAAATGAACG 60.069 52.381 0.02 0.00 0.00 3.95
2630 7478 8.696374 AGACTTACCTCGATGAATTTCTGAATA 58.304 33.333 0.00 0.00 0.00 1.75
2761 7609 4.154737 CCTTCTCGACATCAAAGAATTGCA 59.845 41.667 0.00 0.00 36.45 4.08
2773 7621 3.865745 CGATTAAGTTGCCTTCTCGACAT 59.134 43.478 0.00 0.00 37.81 3.06
2860 7708 2.097466 CCGCTTCTTTGTGTGTTCAAGT 59.903 45.455 0.00 0.00 0.00 3.16
2921 7769 7.571080 AAGTGCAAAATGGTTTGAAAATGAT 57.429 28.000 3.44 0.00 45.99 2.45
2998 7846 1.127567 TGCTGCAGTAGTTCCCTGGT 61.128 55.000 16.64 0.00 0.00 4.00
3544 9551 6.987403 TTTTAATAAGGTGCCCAAGAGTTT 57.013 33.333 0.00 0.00 0.00 2.66
3838 11271 2.367894 TGCTGAAACAAAATGATGGCCA 59.632 40.909 8.56 8.56 0.00 5.36
3878 11311 9.448438 TGCATTACTTTAGTCACTGATATTTGT 57.552 29.630 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.