Multiple sequence alignment - TraesCS4B01G199600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G199600 chr4B 100.000 2269 0 0 994 3262 428189774 428187506 0.000000e+00 4191
1 TraesCS4B01G199600 chr4B 100.000 575 0 0 1 575 428190767 428190193 0.000000e+00 1062
2 TraesCS4B01G199600 chr3D 89.766 1749 122 25 1570 3262 264632747 264634494 0.000000e+00 2185
3 TraesCS4B01G199600 chr3D 91.645 778 65 0 1492 2269 264611323 264612100 0.000000e+00 1077
4 TraesCS4B01G199600 chr3D 85.635 898 83 20 1570 2449 385163024 385163893 0.000000e+00 902
5 TraesCS4B01G199600 chr3D 88.741 675 52 9 2495 3168 385163987 385164638 0.000000e+00 804
6 TraesCS4B01G199600 chr3D 89.498 638 50 8 1000 1634 385162506 385163129 0.000000e+00 791
7 TraesCS4B01G199600 chr3D 90.361 498 42 4 1005 1497 264609264 264609760 0.000000e+00 649
8 TraesCS4B01G199600 chr7D 88.994 1699 128 17 1587 3262 508500056 508501718 0.000000e+00 2047
9 TraesCS4B01G199600 chr7D 86.364 1716 168 31 1570 3262 80434768 80433096 0.000000e+00 1812
10 TraesCS4B01G199600 chr7D 90.343 642 55 5 999 1634 80435303 80434663 0.000000e+00 835
11 TraesCS4B01G199600 chr7D 86.351 718 89 7 1570 2280 147493176 147492461 0.000000e+00 774
12 TraesCS4B01G199600 chr7D 88.000 650 65 8 994 1634 508499498 508500143 0.000000e+00 756
13 TraesCS4B01G199600 chr3A 88.141 1501 118 31 1808 3262 325062787 325064273 0.000000e+00 1731
14 TraesCS4B01G199600 chr3A 89.548 641 53 6 1000 1634 113337267 113336635 0.000000e+00 800
15 TraesCS4B01G199600 chr3A 87.809 648 70 5 994 1634 325027242 325027887 0.000000e+00 750
16 TraesCS4B01G199600 chr3A 91.026 468 36 3 2800 3262 113333615 113333149 7.680000e-176 627
17 TraesCS4B01G199600 chr3A 85.996 507 35 12 2179 2666 113334348 113333859 8.070000e-141 510
18 TraesCS4B01G199600 chr5B 86.681 1419 159 15 1000 2413 291895381 291896774 0.000000e+00 1546
19 TraesCS4B01G199600 chr5B 80.894 246 38 5 317 560 291895026 291895264 5.560000e-43 185
20 TraesCS4B01G199600 chr4A 85.657 1248 126 29 1570 2808 212735865 212734662 0.000000e+00 1264
21 TraesCS4B01G199600 chr4A 88.612 641 59 4 999 1634 212736391 212735760 0.000000e+00 767
22 TraesCS4B01G199600 chr4A 89.150 341 12 11 1 318 117705555 117705893 5.070000e-108 401
23 TraesCS4B01G199600 chr4A 76.582 316 45 17 2331 2627 434742295 434742600 2.620000e-31 147
24 TraesCS4B01G199600 chr1B 92.849 839 56 3 1570 2405 300337039 300337876 0.000000e+00 1214
25 TraesCS4B01G199600 chr1B 91.392 790 58 6 2479 3260 300337992 300338779 0.000000e+00 1074
26 TraesCS4B01G199600 chr1B 94.169 343 18 2 994 1334 300336226 300336568 3.730000e-144 521
27 TraesCS4B01G199600 chr1B 91.195 318 24 2 1321 1634 300336829 300337146 2.330000e-116 429
28 TraesCS4B01G199600 chr6D 85.698 902 83 19 1570 2452 358085777 358084903 0.000000e+00 909
29 TraesCS4B01G199600 chr6D 89.168 637 59 6 999 1634 358086299 358085672 0.000000e+00 785
30 TraesCS4B01G199600 chr6D 90.167 478 39 4 2791 3261 358084515 358084039 1.660000e-172 616
31 TraesCS4B01G199600 chr6B 87.611 791 73 12 2495 3260 153316305 153317095 0.000000e+00 894
32 TraesCS4B01G199600 chr6B 87.404 651 61 12 994 1631 153314799 153315441 0.000000e+00 728
33 TraesCS4B01G199600 chr2D 91.256 446 32 5 2820 3260 135596126 135595683 4.660000e-168 601
34 TraesCS4B01G199600 chr4D 90.208 337 11 5 2 318 348035405 348035071 1.400000e-113 420
35 TraesCS4B01G199600 chr2A 89.423 104 9 2 2331 2433 10893966 10893864 2.640000e-26 130
36 TraesCS4B01G199600 chr2A 87.000 100 11 2 2331 2429 710953524 710953622 9.570000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G199600 chr4B 428187506 428190767 3261 True 2626.500000 4191 100.000000 1 3262 2 chr4B.!!$R1 3261
1 TraesCS4B01G199600 chr3D 264632747 264634494 1747 False 2185.000000 2185 89.766000 1570 3262 1 chr3D.!!$F1 1692
2 TraesCS4B01G199600 chr3D 264609264 264612100 2836 False 863.000000 1077 91.003000 1005 2269 2 chr3D.!!$F2 1264
3 TraesCS4B01G199600 chr3D 385162506 385164638 2132 False 832.333333 902 87.958000 1000 3168 3 chr3D.!!$F3 2168
4 TraesCS4B01G199600 chr7D 508499498 508501718 2220 False 1401.500000 2047 88.497000 994 3262 2 chr7D.!!$F1 2268
5 TraesCS4B01G199600 chr7D 80433096 80435303 2207 True 1323.500000 1812 88.353500 999 3262 2 chr7D.!!$R2 2263
6 TraesCS4B01G199600 chr7D 147492461 147493176 715 True 774.000000 774 86.351000 1570 2280 1 chr7D.!!$R1 710
7 TraesCS4B01G199600 chr3A 325062787 325064273 1486 False 1731.000000 1731 88.141000 1808 3262 1 chr3A.!!$F2 1454
8 TraesCS4B01G199600 chr3A 325027242 325027887 645 False 750.000000 750 87.809000 994 1634 1 chr3A.!!$F1 640
9 TraesCS4B01G199600 chr3A 113333149 113337267 4118 True 645.666667 800 88.856667 1000 3262 3 chr3A.!!$R1 2262
10 TraesCS4B01G199600 chr5B 291895026 291896774 1748 False 865.500000 1546 83.787500 317 2413 2 chr5B.!!$F1 2096
11 TraesCS4B01G199600 chr4A 212734662 212736391 1729 True 1015.500000 1264 87.134500 999 2808 2 chr4A.!!$R1 1809
12 TraesCS4B01G199600 chr1B 300336226 300338779 2553 False 809.500000 1214 92.401250 994 3260 4 chr1B.!!$F1 2266
13 TraesCS4B01G199600 chr6D 358084039 358086299 2260 True 770.000000 909 88.344333 999 3261 3 chr6D.!!$R1 2262
14 TraesCS4B01G199600 chr6B 153314799 153317095 2296 False 811.000000 894 87.507500 994 3260 2 chr6B.!!$F1 2266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.035439 TTGGGTCATCTTTCGGAGGC 60.035 55.000 0.00 0.00 0.00 4.70 F
283 284 0.036388 TTTCGGAGGCGAATCTGCTT 60.036 50.000 0.00 0.00 34.52 3.91 F
291 292 0.102481 GCGAATCTGCTTCCGGTAGA 59.898 55.000 12.94 7.53 40.72 2.59 F
298 299 0.107703 TGCTTCCGGTAGAATGGCTG 60.108 55.000 12.94 0.00 32.82 4.85 F
411 414 0.179020 TCCAGTCCCACAACTTGCAG 60.179 55.000 0.00 0.00 0.00 4.41 F
521 524 0.190815 ACCCCATGCCTTTCCTTGTT 59.809 50.000 0.00 0.00 0.00 2.83 F
538 541 1.346395 TGTTATGAACCCGCACTCACT 59.654 47.619 0.00 0.00 0.00 3.41 F
547 550 1.542547 CCCGCACTCACTAAAACACCT 60.543 52.381 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1259 1265 0.521735 GCACAACCCACGAATCTTCC 59.478 55.000 0.00 0.00 0.00 3.46 R
1268 1274 0.534873 ACCTTTTGTGCACAACCCAC 59.465 50.000 31.17 0.00 35.28 4.61 R
1810 3771 1.483595 CCTGAGCCTGAGGTTGACCA 61.484 60.000 0.00 0.00 38.89 4.02 R
1960 3922 2.690778 GCTAGCCTTGTGTTGCCCG 61.691 63.158 2.29 0.00 0.00 6.13 R
2063 4025 3.033184 CTCATCCCTCTCTTTCTCTGCT 58.967 50.000 0.00 0.00 0.00 4.24 R
2233 5991 3.972638 ACATTCATCTAGCATCTCCCTGT 59.027 43.478 0.00 0.00 0.00 4.00 R
2234 5992 4.040095 TCACATTCATCTAGCATCTCCCTG 59.960 45.833 0.00 0.00 0.00 4.45 R
2433 6236 6.902341 TGAGTGCATCAAAGATAACTCAAAC 58.098 36.000 16.23 0.24 40.63 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.543537 CGGGAGGAGATGTGGGAG 58.456 66.667 0.00 0.00 0.00 4.30
24 25 2.801631 CGGGAGGAGATGTGGGAGC 61.802 68.421 0.00 0.00 0.00 4.70
25 26 2.447714 GGGAGGAGATGTGGGAGCC 61.448 68.421 0.00 0.00 0.00 4.70
26 27 1.690633 GGAGGAGATGTGGGAGCCA 60.691 63.158 0.00 0.00 0.00 4.75
27 28 1.274703 GGAGGAGATGTGGGAGCCAA 61.275 60.000 0.00 0.00 34.18 4.52
28 29 0.179936 GAGGAGATGTGGGAGCCAAG 59.820 60.000 0.00 0.00 34.18 3.61
29 30 0.548682 AGGAGATGTGGGAGCCAAGT 60.549 55.000 0.00 0.00 34.18 3.16
30 31 0.329596 GGAGATGTGGGAGCCAAGTT 59.670 55.000 0.00 0.00 34.18 2.66
31 32 1.457346 GAGATGTGGGAGCCAAGTTG 58.543 55.000 0.00 0.00 34.18 3.16
32 33 0.038744 AGATGTGGGAGCCAAGTTGG 59.961 55.000 18.17 18.17 41.55 3.77
41 42 4.473643 CCAAGTTGGCGACTGGAA 57.526 55.556 11.09 0.00 39.00 3.53
42 43 2.714259 CCAAGTTGGCGACTGGAAA 58.286 52.632 11.09 0.00 39.00 3.13
43 44 1.247567 CCAAGTTGGCGACTGGAAAT 58.752 50.000 11.09 0.00 39.00 2.17
44 45 1.068333 CCAAGTTGGCGACTGGAAATG 60.068 52.381 11.09 3.79 39.00 2.32
45 46 1.068333 CAAGTTGGCGACTGGAAATGG 60.068 52.381 8.47 0.00 39.00 3.16
46 47 0.609131 AGTTGGCGACTGGAAATGGG 60.609 55.000 6.59 0.00 37.17 4.00
47 48 0.608035 GTTGGCGACTGGAAATGGGA 60.608 55.000 0.00 0.00 0.00 4.37
48 49 0.331278 TTGGCGACTGGAAATGGGAT 59.669 50.000 0.00 0.00 0.00 3.85
49 50 0.394216 TGGCGACTGGAAATGGGATG 60.394 55.000 0.00 0.00 0.00 3.51
50 51 0.107214 GGCGACTGGAAATGGGATGA 60.107 55.000 0.00 0.00 0.00 2.92
51 52 1.017387 GCGACTGGAAATGGGATGAC 58.983 55.000 0.00 0.00 0.00 3.06
52 53 1.290203 CGACTGGAAATGGGATGACG 58.710 55.000 0.00 0.00 0.00 4.35
53 54 1.668419 GACTGGAAATGGGATGACGG 58.332 55.000 0.00 0.00 0.00 4.79
54 55 1.209504 GACTGGAAATGGGATGACGGA 59.790 52.381 0.00 0.00 0.00 4.69
55 56 1.633432 ACTGGAAATGGGATGACGGAA 59.367 47.619 0.00 0.00 0.00 4.30
56 57 2.292267 CTGGAAATGGGATGACGGAAG 58.708 52.381 0.00 0.00 0.00 3.46
57 58 1.064758 TGGAAATGGGATGACGGAAGG 60.065 52.381 0.00 0.00 0.00 3.46
58 59 1.211949 GGAAATGGGATGACGGAAGGA 59.788 52.381 0.00 0.00 0.00 3.36
59 60 2.356741 GGAAATGGGATGACGGAAGGAA 60.357 50.000 0.00 0.00 0.00 3.36
60 61 2.717639 AATGGGATGACGGAAGGAAG 57.282 50.000 0.00 0.00 0.00 3.46
61 62 0.839946 ATGGGATGACGGAAGGAAGG 59.160 55.000 0.00 0.00 0.00 3.46
62 63 0.252513 TGGGATGACGGAAGGAAGGA 60.253 55.000 0.00 0.00 0.00 3.36
63 64 0.909623 GGGATGACGGAAGGAAGGAA 59.090 55.000 0.00 0.00 0.00 3.36
64 65 1.134371 GGGATGACGGAAGGAAGGAAG 60.134 57.143 0.00 0.00 0.00 3.46
65 66 1.134371 GGATGACGGAAGGAAGGAAGG 60.134 57.143 0.00 0.00 0.00 3.46
66 67 1.555533 GATGACGGAAGGAAGGAAGGT 59.444 52.381 0.00 0.00 0.00 3.50
67 68 0.974383 TGACGGAAGGAAGGAAGGTC 59.026 55.000 0.00 0.00 0.00 3.85
68 69 1.268066 GACGGAAGGAAGGAAGGTCT 58.732 55.000 0.00 0.00 0.00 3.85
69 70 1.205179 GACGGAAGGAAGGAAGGTCTC 59.795 57.143 0.00 0.00 0.00 3.36
70 71 1.203199 ACGGAAGGAAGGAAGGTCTCT 60.203 52.381 0.00 0.00 0.00 3.10
71 72 1.903183 CGGAAGGAAGGAAGGTCTCTT 59.097 52.381 0.00 0.00 35.62 2.85
72 73 2.093921 CGGAAGGAAGGAAGGTCTCTTC 60.094 54.545 0.00 0.00 46.47 2.87
81 82 3.100658 GAAGGTCTCTTCCGGCTAATC 57.899 52.381 0.00 0.00 42.61 1.75
82 83 1.033574 AGGTCTCTTCCGGCTAATCG 58.966 55.000 0.00 0.00 0.00 3.34
83 84 0.745468 GGTCTCTTCCGGCTAATCGT 59.255 55.000 0.00 0.00 0.00 3.73
84 85 1.952296 GGTCTCTTCCGGCTAATCGTA 59.048 52.381 0.00 0.00 0.00 3.43
85 86 2.287487 GGTCTCTTCCGGCTAATCGTAC 60.287 54.545 0.00 0.00 0.00 3.67
86 87 1.600957 TCTCTTCCGGCTAATCGTACG 59.399 52.381 9.53 9.53 0.00 3.67
87 88 1.332997 CTCTTCCGGCTAATCGTACGT 59.667 52.381 16.05 0.00 0.00 3.57
88 89 1.331756 TCTTCCGGCTAATCGTACGTC 59.668 52.381 16.05 0.86 0.00 4.34
89 90 1.332997 CTTCCGGCTAATCGTACGTCT 59.667 52.381 16.05 6.14 0.00 4.18
90 91 0.940126 TCCGGCTAATCGTACGTCTC 59.060 55.000 16.05 1.56 0.00 3.36
91 92 0.040603 CCGGCTAATCGTACGTCTCC 60.041 60.000 16.05 9.47 0.00 3.71
92 93 0.383983 CGGCTAATCGTACGTCTCCG 60.384 60.000 16.05 16.65 40.83 4.63
94 95 1.333613 GGCTAATCGTACGTCTCCGTC 60.334 57.143 16.05 0.00 46.28 4.79
95 96 1.328680 GCTAATCGTACGTCTCCGTCA 59.671 52.381 16.05 0.00 46.28 4.35
96 97 2.599377 GCTAATCGTACGTCTCCGTCAG 60.599 54.545 16.05 4.00 46.28 3.51
97 98 1.446907 AATCGTACGTCTCCGTCAGT 58.553 50.000 16.05 0.00 46.28 3.41
98 99 1.446907 ATCGTACGTCTCCGTCAGTT 58.553 50.000 16.05 0.00 46.28 3.16
99 100 0.792640 TCGTACGTCTCCGTCAGTTC 59.207 55.000 16.05 0.00 46.28 3.01
100 101 0.517946 CGTACGTCTCCGTCAGTTCG 60.518 60.000 7.22 0.00 46.28 3.95
101 102 0.514691 GTACGTCTCCGTCAGTTCGT 59.485 55.000 0.00 0.00 46.28 3.85
102 103 0.514255 TACGTCTCCGTCAGTTCGTG 59.486 55.000 0.00 0.00 46.28 4.35
103 104 1.162181 ACGTCTCCGTCAGTTCGTGA 61.162 55.000 0.00 0.00 46.28 4.35
104 105 0.168348 CGTCTCCGTCAGTTCGTGAT 59.832 55.000 0.00 0.00 37.56 3.06
105 106 1.790838 CGTCTCCGTCAGTTCGTGATC 60.791 57.143 0.00 0.00 37.56 2.92
106 107 0.446616 TCTCCGTCAGTTCGTGATCG 59.553 55.000 0.00 0.00 37.56 3.69
107 108 0.168348 CTCCGTCAGTTCGTGATCGT 59.832 55.000 0.00 0.00 37.56 3.73
108 109 0.109919 TCCGTCAGTTCGTGATCGTG 60.110 55.000 0.00 0.00 37.56 4.35
109 110 1.674611 CCGTCAGTTCGTGATCGTGC 61.675 60.000 0.00 0.00 37.56 5.34
110 111 1.001745 CGTCAGTTCGTGATCGTGCA 61.002 55.000 0.00 0.00 37.56 4.57
111 112 0.435008 GTCAGTTCGTGATCGTGCAC 59.565 55.000 6.82 6.82 37.56 4.57
112 113 0.666274 TCAGTTCGTGATCGTGCACC 60.666 55.000 12.15 0.00 35.37 5.01
113 114 0.667487 CAGTTCGTGATCGTGCACCT 60.667 55.000 12.15 0.00 35.37 4.00
114 115 0.885879 AGTTCGTGATCGTGCACCTA 59.114 50.000 12.15 0.00 35.37 3.08
115 116 1.135373 AGTTCGTGATCGTGCACCTAG 60.135 52.381 12.15 0.00 35.37 3.02
116 117 0.457853 TTCGTGATCGTGCACCTAGC 60.458 55.000 12.15 2.96 38.75 3.42
117 118 1.139734 CGTGATCGTGCACCTAGCT 59.860 57.895 12.15 0.00 45.94 3.32
118 119 0.380733 CGTGATCGTGCACCTAGCTA 59.619 55.000 12.15 0.00 45.94 3.32
119 120 1.001268 CGTGATCGTGCACCTAGCTAT 60.001 52.381 12.15 0.00 45.94 2.97
120 121 2.667137 GTGATCGTGCACCTAGCTATC 58.333 52.381 12.15 5.75 45.94 2.08
121 122 2.294791 GTGATCGTGCACCTAGCTATCT 59.705 50.000 12.15 0.00 45.94 1.98
122 123 2.294512 TGATCGTGCACCTAGCTATCTG 59.705 50.000 12.15 0.00 45.94 2.90
123 124 1.763968 TCGTGCACCTAGCTATCTGT 58.236 50.000 12.15 0.00 45.94 3.41
124 125 2.100197 TCGTGCACCTAGCTATCTGTT 58.900 47.619 12.15 0.00 45.94 3.16
125 126 2.159240 TCGTGCACCTAGCTATCTGTTG 60.159 50.000 12.15 0.00 45.94 3.33
126 127 2.555199 GTGCACCTAGCTATCTGTTGG 58.445 52.381 5.22 0.00 45.94 3.77
127 128 2.093447 GTGCACCTAGCTATCTGTTGGT 60.093 50.000 5.22 0.00 45.94 3.67
128 129 2.168521 TGCACCTAGCTATCTGTTGGTC 59.831 50.000 0.00 0.00 45.94 4.02
129 130 2.483889 GCACCTAGCTATCTGTTGGTCC 60.484 54.545 0.00 0.00 41.15 4.46
130 131 2.103263 CACCTAGCTATCTGTTGGTCCC 59.897 54.545 0.00 0.00 0.00 4.46
131 132 2.292918 ACCTAGCTATCTGTTGGTCCCA 60.293 50.000 0.00 0.00 0.00 4.37
132 133 2.103263 CCTAGCTATCTGTTGGTCCCAC 59.897 54.545 0.00 0.00 0.00 4.61
133 134 0.912486 AGCTATCTGTTGGTCCCACC 59.088 55.000 0.00 0.00 39.22 4.61
142 143 2.754254 GGTCCCACCAAATCGGGC 60.754 66.667 0.00 0.00 42.75 6.13
143 144 2.355115 GTCCCACCAAATCGGGCT 59.645 61.111 0.00 0.00 42.75 5.19
144 145 2.046285 GTCCCACCAAATCGGGCTG 61.046 63.158 0.00 0.00 42.75 4.85
145 146 3.451894 CCCACCAAATCGGGCTGC 61.452 66.667 0.00 0.00 40.22 5.25
146 147 3.814268 CCACCAAATCGGGCTGCG 61.814 66.667 0.00 0.00 40.22 5.18
147 148 3.814268 CACCAAATCGGGCTGCGG 61.814 66.667 0.00 0.00 40.22 5.69
148 149 4.344865 ACCAAATCGGGCTGCGGT 62.345 61.111 0.00 0.00 40.22 5.68
149 150 3.814268 CCAAATCGGGCTGCGGTG 61.814 66.667 0.00 0.00 0.00 4.94
150 151 3.055719 CAAATCGGGCTGCGGTGT 61.056 61.111 0.00 0.00 0.00 4.16
151 152 2.282180 AAATCGGGCTGCGGTGTT 60.282 55.556 0.00 0.00 0.00 3.32
152 153 1.901464 AAATCGGGCTGCGGTGTTT 60.901 52.632 0.00 0.00 0.00 2.83
153 154 1.460273 AAATCGGGCTGCGGTGTTTT 61.460 50.000 0.00 0.00 0.00 2.43
154 155 2.141122 AATCGGGCTGCGGTGTTTTG 62.141 55.000 0.00 0.00 0.00 2.44
155 156 3.591835 CGGGCTGCGGTGTTTTGT 61.592 61.111 0.00 0.00 0.00 2.83
156 157 2.335011 GGGCTGCGGTGTTTTGTC 59.665 61.111 0.00 0.00 0.00 3.18
157 158 2.051345 GGCTGCGGTGTTTTGTCG 60.051 61.111 0.00 0.00 0.00 4.35
161 162 4.702020 GCGGTGTTTTGTCGCTTT 57.298 50.000 0.00 0.00 45.16 3.51
162 163 2.952273 GCGGTGTTTTGTCGCTTTT 58.048 47.368 0.00 0.00 45.16 2.27
163 164 0.570272 GCGGTGTTTTGTCGCTTTTG 59.430 50.000 0.00 0.00 45.16 2.44
164 165 1.795889 GCGGTGTTTTGTCGCTTTTGA 60.796 47.619 0.00 0.00 45.16 2.69
165 166 1.843753 CGGTGTTTTGTCGCTTTTGAC 59.156 47.619 0.00 0.00 39.37 3.18
166 167 1.843753 GGTGTTTTGTCGCTTTTGACG 59.156 47.619 0.00 0.00 41.87 4.35
167 168 2.511879 GTGTTTTGTCGCTTTTGACGT 58.488 42.857 0.00 0.00 41.87 4.34
168 169 2.275253 GTGTTTTGTCGCTTTTGACGTG 59.725 45.455 0.00 0.00 41.87 4.49
169 170 1.843753 GTTTTGTCGCTTTTGACGTGG 59.156 47.619 0.00 0.00 41.87 4.94
170 171 0.378962 TTTGTCGCTTTTGACGTGGG 59.621 50.000 0.00 0.00 41.87 4.61
171 172 0.745128 TTGTCGCTTTTGACGTGGGT 60.745 50.000 0.00 0.00 41.87 4.51
172 173 1.278637 GTCGCTTTTGACGTGGGTG 59.721 57.895 0.00 0.00 0.00 4.61
173 174 1.144276 TCGCTTTTGACGTGGGTGA 59.856 52.632 0.00 0.00 0.00 4.02
174 175 1.155424 TCGCTTTTGACGTGGGTGAC 61.155 55.000 0.00 0.00 0.00 3.67
183 184 3.806591 CGTGGGTGACGTAACTGAT 57.193 52.632 2.34 0.00 43.50 2.90
184 185 2.074547 CGTGGGTGACGTAACTGATT 57.925 50.000 2.34 0.00 43.50 2.57
185 186 1.724623 CGTGGGTGACGTAACTGATTG 59.275 52.381 2.34 0.00 43.50 2.67
186 187 2.073816 GTGGGTGACGTAACTGATTGG 58.926 52.381 2.34 0.00 0.00 3.16
187 188 1.002659 TGGGTGACGTAACTGATTGGG 59.997 52.381 2.34 0.00 0.00 4.12
188 189 1.002773 GGGTGACGTAACTGATTGGGT 59.997 52.381 2.34 0.00 0.00 4.51
189 190 2.344025 GGTGACGTAACTGATTGGGTC 58.656 52.381 2.34 0.00 0.00 4.46
190 191 2.289195 GGTGACGTAACTGATTGGGTCA 60.289 50.000 2.34 0.00 32.29 4.02
191 192 3.596214 GTGACGTAACTGATTGGGTCAT 58.404 45.455 0.00 0.00 35.28 3.06
192 193 3.617263 GTGACGTAACTGATTGGGTCATC 59.383 47.826 0.00 0.00 35.28 2.92
193 194 3.259625 TGACGTAACTGATTGGGTCATCA 59.740 43.478 0.00 0.00 35.97 3.07
194 195 4.081142 TGACGTAACTGATTGGGTCATCAT 60.081 41.667 0.00 0.00 35.97 2.45
195 196 4.442706 ACGTAACTGATTGGGTCATCATC 58.557 43.478 0.00 0.00 35.97 2.92
196 197 3.809832 CGTAACTGATTGGGTCATCATCC 59.190 47.826 0.00 0.00 35.97 3.51
197 198 4.443457 CGTAACTGATTGGGTCATCATCCT 60.443 45.833 0.00 0.00 35.97 3.24
198 199 3.853355 ACTGATTGGGTCATCATCCTC 57.147 47.619 0.00 0.00 35.97 3.71
199 200 3.117745 ACTGATTGGGTCATCATCCTCA 58.882 45.455 0.00 0.00 35.97 3.86
200 201 3.136077 ACTGATTGGGTCATCATCCTCAG 59.864 47.826 0.00 0.00 35.97 3.35
201 202 2.158711 TGATTGGGTCATCATCCTCAGC 60.159 50.000 0.00 0.00 0.00 4.26
202 203 0.178767 TTGGGTCATCATCCTCAGCG 59.821 55.000 0.00 0.00 0.00 5.18
203 204 1.070445 GGGTCATCATCCTCAGCGG 59.930 63.158 0.00 0.00 0.00 5.52
204 205 1.596477 GGTCATCATCCTCAGCGGC 60.596 63.158 0.00 0.00 0.00 6.53
205 206 1.144716 GTCATCATCCTCAGCGGCA 59.855 57.895 1.45 0.00 0.00 5.69
206 207 0.879400 GTCATCATCCTCAGCGGCAG 60.879 60.000 1.45 0.00 0.00 4.85
207 208 1.597302 CATCATCCTCAGCGGCAGG 60.597 63.158 1.45 0.63 0.00 4.85
208 209 3.472943 ATCATCCTCAGCGGCAGGC 62.473 63.158 1.45 0.00 44.05 4.85
222 223 2.040254 AGGCCCCGGCTGGTATAA 60.040 61.111 11.58 0.00 41.60 0.98
223 224 1.463410 AGGCCCCGGCTGGTATAAT 60.463 57.895 11.58 0.00 41.60 1.28
224 225 1.303317 GGCCCCGGCTGGTATAATG 60.303 63.158 11.58 0.00 41.60 1.90
225 226 1.758592 GCCCCGGCTGGTATAATGA 59.241 57.895 11.58 0.00 38.26 2.57
226 227 0.605589 GCCCCGGCTGGTATAATGAC 60.606 60.000 11.58 0.00 38.26 3.06
227 228 0.320421 CCCCGGCTGGTATAATGACG 60.320 60.000 11.58 0.00 0.00 4.35
228 229 0.391597 CCCGGCTGGTATAATGACGT 59.608 55.000 11.58 0.00 0.00 4.34
229 230 1.202604 CCCGGCTGGTATAATGACGTT 60.203 52.381 11.58 0.00 0.00 3.99
230 231 2.557317 CCGGCTGGTATAATGACGTTT 58.443 47.619 2.29 0.00 0.00 3.60
231 232 2.286833 CCGGCTGGTATAATGACGTTTG 59.713 50.000 2.29 0.00 0.00 2.93
232 233 2.933906 CGGCTGGTATAATGACGTTTGT 59.066 45.455 0.00 0.00 0.00 2.83
233 234 3.372822 CGGCTGGTATAATGACGTTTGTT 59.627 43.478 0.00 0.00 0.00 2.83
234 235 4.493545 CGGCTGGTATAATGACGTTTGTTC 60.494 45.833 0.00 0.00 0.00 3.18
235 236 4.634443 GGCTGGTATAATGACGTTTGTTCT 59.366 41.667 0.00 0.00 0.00 3.01
236 237 5.220605 GGCTGGTATAATGACGTTTGTTCTC 60.221 44.000 0.00 0.00 0.00 2.87
237 238 5.350365 GCTGGTATAATGACGTTTGTTCTCA 59.650 40.000 0.00 0.00 0.00 3.27
238 239 6.455646 GCTGGTATAATGACGTTTGTTCTCAG 60.456 42.308 0.00 0.00 0.00 3.35
239 240 5.350365 TGGTATAATGACGTTTGTTCTCAGC 59.650 40.000 0.00 0.00 0.00 4.26
240 241 5.350365 GGTATAATGACGTTTGTTCTCAGCA 59.650 40.000 0.00 0.00 0.00 4.41
241 242 6.037172 GGTATAATGACGTTTGTTCTCAGCAT 59.963 38.462 0.00 0.00 0.00 3.79
242 243 4.836125 AATGACGTTTGTTCTCAGCATT 57.164 36.364 0.00 0.00 0.00 3.56
243 244 3.607422 TGACGTTTGTTCTCAGCATTG 57.393 42.857 0.00 0.00 0.00 2.82
244 245 3.202097 TGACGTTTGTTCTCAGCATTGA 58.798 40.909 0.00 0.00 0.00 2.57
245 246 3.002246 TGACGTTTGTTCTCAGCATTGAC 59.998 43.478 0.00 0.00 0.00 3.18
246 247 2.032894 ACGTTTGTTCTCAGCATTGACG 60.033 45.455 0.00 0.00 0.00 4.35
247 248 2.032894 CGTTTGTTCTCAGCATTGACGT 60.033 45.455 0.00 0.00 0.00 4.34
248 249 3.183574 CGTTTGTTCTCAGCATTGACGTA 59.816 43.478 0.00 0.00 0.00 3.57
249 250 4.318475 CGTTTGTTCTCAGCATTGACGTAA 60.318 41.667 0.00 0.00 0.00 3.18
250 251 5.614668 CGTTTGTTCTCAGCATTGACGTAAT 60.615 40.000 0.00 0.00 0.00 1.89
251 252 5.530519 TTGTTCTCAGCATTGACGTAATC 57.469 39.130 0.00 0.00 0.00 1.75
252 253 3.612423 TGTTCTCAGCATTGACGTAATCG 59.388 43.478 0.00 0.00 43.34 3.34
253 254 3.775661 TCTCAGCATTGACGTAATCGA 57.224 42.857 0.00 0.00 40.62 3.59
254 255 4.307443 TCTCAGCATTGACGTAATCGAT 57.693 40.909 0.00 0.00 40.62 3.59
255 256 4.682787 TCTCAGCATTGACGTAATCGATT 58.317 39.130 16.15 16.15 40.62 3.34
256 257 4.504097 TCTCAGCATTGACGTAATCGATTG 59.496 41.667 20.87 7.41 40.62 2.67
257 258 3.555547 TCAGCATTGACGTAATCGATTGG 59.444 43.478 20.87 14.14 40.62 3.16
258 259 2.872245 AGCATTGACGTAATCGATTGGG 59.128 45.455 20.87 13.80 40.62 4.12
259 260 2.612212 GCATTGACGTAATCGATTGGGT 59.388 45.455 20.87 16.79 40.62 4.51
260 261 3.303132 GCATTGACGTAATCGATTGGGTC 60.303 47.826 24.80 24.80 40.62 4.46
261 262 3.596310 TTGACGTAATCGATTGGGTCA 57.404 42.857 27.88 27.88 40.62 4.02
262 263 3.812156 TGACGTAATCGATTGGGTCAT 57.188 42.857 27.88 9.38 40.62 3.06
263 264 3.713288 TGACGTAATCGATTGGGTCATC 58.287 45.455 27.88 15.74 40.62 2.92
264 265 3.383505 TGACGTAATCGATTGGGTCATCT 59.616 43.478 27.88 4.34 40.62 2.90
265 266 4.142026 TGACGTAATCGATTGGGTCATCTT 60.142 41.667 27.88 4.41 40.62 2.40
266 267 4.766375 ACGTAATCGATTGGGTCATCTTT 58.234 39.130 20.87 0.00 40.62 2.52
267 268 4.809426 ACGTAATCGATTGGGTCATCTTTC 59.191 41.667 20.87 0.00 40.62 2.62
268 269 4.085055 CGTAATCGATTGGGTCATCTTTCG 60.085 45.833 20.87 0.00 39.71 3.46
269 270 2.309528 TCGATTGGGTCATCTTTCGG 57.690 50.000 0.00 0.00 0.00 4.30
270 271 1.828595 TCGATTGGGTCATCTTTCGGA 59.171 47.619 0.00 0.00 0.00 4.55
271 272 2.159099 TCGATTGGGTCATCTTTCGGAG 60.159 50.000 0.00 0.00 0.00 4.63
272 273 2.565841 GATTGGGTCATCTTTCGGAGG 58.434 52.381 0.00 0.00 0.00 4.30
273 274 0.035439 TTGGGTCATCTTTCGGAGGC 60.035 55.000 0.00 0.00 0.00 4.70
274 275 1.521681 GGGTCATCTTTCGGAGGCG 60.522 63.158 0.00 0.00 0.00 5.52
275 276 1.515954 GGTCATCTTTCGGAGGCGA 59.484 57.895 0.00 0.00 0.00 5.54
276 277 0.108329 GGTCATCTTTCGGAGGCGAA 60.108 55.000 0.00 0.00 0.00 4.70
277 278 1.473434 GGTCATCTTTCGGAGGCGAAT 60.473 52.381 0.00 0.00 0.00 3.34
278 279 1.861575 GTCATCTTTCGGAGGCGAATC 59.138 52.381 0.00 0.00 0.00 2.52
279 280 1.757118 TCATCTTTCGGAGGCGAATCT 59.243 47.619 0.00 0.00 0.00 2.40
280 281 1.863454 CATCTTTCGGAGGCGAATCTG 59.137 52.381 0.00 0.00 0.00 2.90
281 282 0.460284 TCTTTCGGAGGCGAATCTGC 60.460 55.000 0.00 0.00 0.00 4.26
282 283 0.460987 CTTTCGGAGGCGAATCTGCT 60.461 55.000 0.00 0.00 34.52 4.24
283 284 0.036388 TTTCGGAGGCGAATCTGCTT 60.036 50.000 0.00 0.00 34.52 3.91
284 285 0.460284 TTCGGAGGCGAATCTGCTTC 60.460 55.000 0.00 1.92 39.99 3.86
286 287 3.711348 GAGGCGAATCTGCTTCCG 58.289 61.111 0.00 0.00 35.13 4.30
287 288 1.884926 GAGGCGAATCTGCTTCCGG 60.885 63.158 0.00 0.00 35.13 5.14
288 289 2.125106 GGCGAATCTGCTTCCGGT 60.125 61.111 0.00 0.00 34.52 5.28
289 290 1.143183 GGCGAATCTGCTTCCGGTA 59.857 57.895 0.00 0.00 34.52 4.02
290 291 0.876342 GGCGAATCTGCTTCCGGTAG 60.876 60.000 3.26 3.26 34.52 3.18
291 292 0.102481 GCGAATCTGCTTCCGGTAGA 59.898 55.000 12.94 7.53 40.72 2.59
292 293 1.470979 GCGAATCTGCTTCCGGTAGAA 60.471 52.381 12.94 0.00 39.92 2.10
293 294 2.803492 GCGAATCTGCTTCCGGTAGAAT 60.803 50.000 12.94 0.42 39.92 2.40
294 295 2.797156 CGAATCTGCTTCCGGTAGAATG 59.203 50.000 12.94 0.93 39.92 2.67
295 296 2.918712 ATCTGCTTCCGGTAGAATGG 57.081 50.000 12.94 0.00 39.92 3.16
296 297 0.178068 TCTGCTTCCGGTAGAATGGC 59.822 55.000 12.94 0.00 33.85 4.40
297 298 0.179000 CTGCTTCCGGTAGAATGGCT 59.821 55.000 12.94 0.00 32.82 4.75
298 299 0.107703 TGCTTCCGGTAGAATGGCTG 60.108 55.000 12.94 0.00 32.82 4.85
299 300 1.440145 GCTTCCGGTAGAATGGCTGC 61.440 60.000 12.94 0.00 32.82 5.25
300 301 0.815615 CTTCCGGTAGAATGGCTGCC 60.816 60.000 12.87 12.87 45.08 4.85
305 306 2.101700 GTAGAATGGCTGCCACTGC 58.898 57.895 25.99 17.03 35.80 4.40
306 307 0.393537 GTAGAATGGCTGCCACTGCT 60.394 55.000 25.99 21.86 35.80 4.24
307 308 1.134401 GTAGAATGGCTGCCACTGCTA 60.134 52.381 25.99 20.84 35.80 3.49
308 309 0.549950 AGAATGGCTGCCACTGCTAT 59.450 50.000 25.99 3.48 35.80 2.97
309 310 1.064166 AGAATGGCTGCCACTGCTATT 60.064 47.619 25.99 13.41 40.68 1.73
310 311 1.753073 GAATGGCTGCCACTGCTATTT 59.247 47.619 25.99 12.60 38.90 1.40
311 312 2.734755 ATGGCTGCCACTGCTATTTA 57.265 45.000 25.99 0.00 35.80 1.40
312 313 2.734755 TGGCTGCCACTGCTATTTAT 57.265 45.000 19.30 0.00 38.71 1.40
313 314 3.017048 TGGCTGCCACTGCTATTTATT 57.983 42.857 19.30 0.00 38.71 1.40
314 315 3.364549 TGGCTGCCACTGCTATTTATTT 58.635 40.909 19.30 0.00 38.71 1.40
315 316 4.531854 TGGCTGCCACTGCTATTTATTTA 58.468 39.130 19.30 0.00 38.71 1.40
321 322 7.469181 GCTGCCACTGCTATTTATTTATTGAGT 60.469 37.037 0.00 0.00 38.71 3.41
340 343 5.865085 TGAGTTAAAAGCACTGTGTCCTAT 58.135 37.500 9.86 0.00 0.00 2.57
347 350 3.600388 AGCACTGTGTCCTATAACTTGC 58.400 45.455 9.86 0.00 0.00 4.01
350 353 4.820897 CACTGTGTCCTATAACTTGCTCA 58.179 43.478 0.00 0.00 0.00 4.26
351 354 4.867047 CACTGTGTCCTATAACTTGCTCAG 59.133 45.833 0.00 0.00 0.00 3.35
355 358 5.897250 TGTGTCCTATAACTTGCTCAGGATA 59.103 40.000 0.00 0.00 37.71 2.59
366 369 8.618702 AACTTGCTCAGGATATGATGATTTAG 57.381 34.615 0.00 0.00 37.28 1.85
367 370 7.743749 ACTTGCTCAGGATATGATGATTTAGT 58.256 34.615 0.00 0.00 37.28 2.24
372 375 8.535335 GCTCAGGATATGATGATTTAGTCCTAA 58.465 37.037 0.00 0.00 37.28 2.69
400 403 7.775561 ACTTACAAAATGAATCTATCCAGTCCC 59.224 37.037 0.00 0.00 0.00 4.46
402 405 5.888161 ACAAAATGAATCTATCCAGTCCCAC 59.112 40.000 0.00 0.00 0.00 4.61
403 406 5.715439 AAATGAATCTATCCAGTCCCACA 57.285 39.130 0.00 0.00 0.00 4.17
411 414 0.179020 TCCAGTCCCACAACTTGCAG 60.179 55.000 0.00 0.00 0.00 4.41
416 419 1.067916 CCCACAACTTGCAGCCAAC 59.932 57.895 0.00 0.00 0.00 3.77
427 430 1.481819 GCAGCCAACGTGCAACTTTG 61.482 55.000 0.36 0.00 44.72 2.77
433 436 3.684103 CAACGTGCAACTTTGGTCTTA 57.316 42.857 0.00 0.00 41.80 2.10
462 465 1.005630 AGCTCGACAACTGGACTGC 60.006 57.895 0.00 0.00 0.00 4.40
464 467 0.601311 GCTCGACAACTGGACTGCTT 60.601 55.000 0.00 0.00 0.00 3.91
470 473 3.513750 AACTGGACTGCTTGGGCCC 62.514 63.158 17.59 17.59 37.74 5.80
479 482 2.203684 CTTGGGCCCAAGCTGGTT 60.204 61.111 43.84 0.00 45.38 3.67
519 522 2.459555 ATACCCCATGCCTTTCCTTG 57.540 50.000 0.00 0.00 0.00 3.61
521 524 0.190815 ACCCCATGCCTTTCCTTGTT 59.809 50.000 0.00 0.00 0.00 2.83
524 527 2.431782 CCCCATGCCTTTCCTTGTTATG 59.568 50.000 0.00 0.00 0.00 1.90
530 533 2.163613 GCCTTTCCTTGTTATGAACCCG 59.836 50.000 0.00 0.00 0.00 5.28
537 540 1.803334 TGTTATGAACCCGCACTCAC 58.197 50.000 0.00 0.00 0.00 3.51
538 541 1.346395 TGTTATGAACCCGCACTCACT 59.654 47.619 0.00 0.00 0.00 3.41
539 542 2.563620 TGTTATGAACCCGCACTCACTA 59.436 45.455 0.00 0.00 0.00 2.74
540 543 3.007074 TGTTATGAACCCGCACTCACTAA 59.993 43.478 0.00 0.00 0.00 2.24
541 544 2.851263 ATGAACCCGCACTCACTAAA 57.149 45.000 0.00 0.00 0.00 1.85
545 548 1.589803 ACCCGCACTCACTAAAACAC 58.410 50.000 0.00 0.00 0.00 3.32
547 550 1.542547 CCCGCACTCACTAAAACACCT 60.543 52.381 0.00 0.00 0.00 4.00
565 568 8.661352 AAACACCTGAATTAATTGTTTTGGAG 57.339 30.769 5.17 2.33 37.13 3.86
566 569 7.595819 ACACCTGAATTAATTGTTTTGGAGA 57.404 32.000 5.17 0.00 0.00 3.71
568 571 6.868339 CACCTGAATTAATTGTTTTGGAGACC 59.132 38.462 5.17 0.00 0.00 3.85
569 572 6.553100 ACCTGAATTAATTGTTTTGGAGACCA 59.447 34.615 5.17 0.00 0.00 4.02
570 573 6.868339 CCTGAATTAATTGTTTTGGAGACCAC 59.132 38.462 5.17 0.00 30.78 4.16
572 575 4.839668 TTAATTGTTTTGGAGACCACGG 57.160 40.909 0.00 0.00 30.78 4.94
574 577 1.670791 TTGTTTTGGAGACCACGGTC 58.329 50.000 8.23 8.23 44.86 4.79
1135 1140 4.487804 TGGGGATTTTTGACCAGATTTGA 58.512 39.130 0.00 0.00 0.00 2.69
1259 1265 3.459232 TTGAGTCTGTTGACAGTGGAG 57.541 47.619 10.66 0.00 45.20 3.86
1268 1274 2.996621 GTTGACAGTGGAGGAAGATTCG 59.003 50.000 0.00 0.00 0.00 3.34
1368 1648 9.461312 AGTTGTACATGCTTTATCCATTTAAGA 57.539 29.630 0.00 0.00 0.00 2.10
1401 1684 6.766944 TGATTGAACTTCATTTGTGCCATTTT 59.233 30.769 0.00 0.00 0.00 1.82
1404 1687 8.674263 TTGAACTTCATTTGTGCCATTTTTAT 57.326 26.923 0.00 0.00 0.00 1.40
1405 1688 9.770097 TTGAACTTCATTTGTGCCATTTTTATA 57.230 25.926 0.00 0.00 0.00 0.98
1524 3384 6.086871 GCTCAAAGGTTACTGTGAAAATAGC 58.913 40.000 0.00 0.00 40.39 2.97
1531 3391 5.335661 GGTTACTGTGAAAATAGCAACCTGG 60.336 44.000 0.00 0.00 37.36 4.45
1534 3394 5.815581 ACTGTGAAAATAGCAACCTGGATA 58.184 37.500 0.00 0.00 0.00 2.59
1612 3554 9.436957 AACTAAATGTAGATTCAGTGTTACTGG 57.563 33.333 8.91 0.00 45.94 4.00
1634 3595 6.446318 TGGATTTTGTGCAGTTAACTGAATC 58.554 36.000 34.43 28.80 46.59 2.52
1635 3596 6.265196 TGGATTTTGTGCAGTTAACTGAATCT 59.735 34.615 34.43 14.08 46.59 2.40
1636 3597 7.147976 GGATTTTGTGCAGTTAACTGAATCTT 58.852 34.615 34.43 14.68 46.59 2.40
1637 3598 7.115378 GGATTTTGTGCAGTTAACTGAATCTTG 59.885 37.037 34.43 11.56 46.59 3.02
1638 3599 6.691754 TTTGTGCAGTTAACTGAATCTTGA 57.308 33.333 34.43 13.37 46.59 3.02
1639 3600 6.882610 TTGTGCAGTTAACTGAATCTTGAT 57.117 33.333 34.43 0.00 46.59 2.57
1640 3601 6.882610 TGTGCAGTTAACTGAATCTTGATT 57.117 33.333 34.43 0.00 46.59 2.57
1641 3602 7.275888 TGTGCAGTTAACTGAATCTTGATTT 57.724 32.000 34.43 0.00 46.59 2.17
1642 3603 8.389779 TGTGCAGTTAACTGAATCTTGATTTA 57.610 30.769 34.43 7.62 46.59 1.40
1643 3604 8.506437 TGTGCAGTTAACTGAATCTTGATTTAG 58.494 33.333 34.43 11.85 46.59 1.85
1644 3605 8.507249 GTGCAGTTAACTGAATCTTGATTTAGT 58.493 33.333 34.43 12.92 46.59 2.24
1645 3606 8.506437 TGCAGTTAACTGAATCTTGATTTAGTG 58.494 33.333 34.43 7.39 46.59 2.74
1646 3607 8.507249 GCAGTTAACTGAATCTTGATTTAGTGT 58.493 33.333 34.43 11.82 46.59 3.55
1661 3622 8.795786 TGATTTAGTGTTATTGAACTTTGTGC 57.204 30.769 0.00 0.00 36.45 4.57
1662 3623 8.409371 TGATTTAGTGTTATTGAACTTTGTGCA 58.591 29.630 0.00 0.00 36.45 4.57
1663 3624 8.801715 ATTTAGTGTTATTGAACTTTGTGCAG 57.198 30.769 0.00 0.00 36.45 4.41
1664 3625 5.835113 AGTGTTATTGAACTTTGTGCAGT 57.165 34.783 0.00 0.00 36.45 4.40
1665 3626 6.207691 AGTGTTATTGAACTTTGTGCAGTT 57.792 33.333 0.00 0.00 39.84 3.16
1666 3627 7.328277 AGTGTTATTGAACTTTGTGCAGTTA 57.672 32.000 0.00 0.00 37.11 2.24
1667 3628 7.767261 AGTGTTATTGAACTTTGTGCAGTTAA 58.233 30.769 0.00 0.00 37.11 2.01
1668 3629 7.700656 AGTGTTATTGAACTTTGTGCAGTTAAC 59.299 33.333 0.00 0.00 37.11 2.01
1669 3630 7.700656 GTGTTATTGAACTTTGTGCAGTTAACT 59.299 33.333 1.12 1.12 37.11 2.24
1670 3631 7.700234 TGTTATTGAACTTTGTGCAGTTAACTG 59.300 33.333 27.85 27.85 40.37 3.16
1671 3632 5.888691 TTGAACTTTGTGCAGTTAACTGA 57.111 34.783 34.43 18.81 46.59 3.41
1672 3633 5.888691 TGAACTTTGTGCAGTTAACTGAA 57.111 34.783 34.43 24.84 46.59 3.02
1673 3634 6.449635 TGAACTTTGTGCAGTTAACTGAAT 57.550 33.333 34.43 11.98 46.59 2.57
1685 3646 8.087136 TGCAGTTAACTGAATAATGCATTTCAA 58.913 29.630 34.43 0.00 46.59 2.69
1748 3709 2.026641 CCCTATGTGCATTGGGTTGAG 58.973 52.381 19.10 0.00 45.15 3.02
1792 3753 4.806952 AGATGAGTCTAGCTAGGGTCTT 57.193 45.455 20.58 14.24 31.36 3.01
1810 3771 4.080863 GGTCTTGGACATGTATGAAGAGGT 60.081 45.833 11.92 0.00 33.68 3.85
1960 3922 3.549794 AGGAGCAGGCAATTACTGAATC 58.450 45.455 12.17 8.96 38.20 2.52
2003 3965 7.255139 GCTCTCTCTGACCTAAAGATAGAACTC 60.255 44.444 0.00 0.00 29.53 3.01
2020 3982 9.145865 GATAGAACTCGAGAAGAAGAAAATGTT 57.854 33.333 21.68 0.00 0.00 2.71
2024 3986 7.736447 ACTCGAGAAGAAGAAAATGTTTGAT 57.264 32.000 21.68 0.00 0.00 2.57
2063 4025 3.186283 TCATCAGGTGGTAAGGGCTAAA 58.814 45.455 0.00 0.00 0.00 1.85
2233 5991 3.330701 ACCAAGTGCAAGATAAGGAAGGA 59.669 43.478 0.00 0.00 0.00 3.36
2234 5992 3.691609 CCAAGTGCAAGATAAGGAAGGAC 59.308 47.826 0.00 0.00 0.00 3.85
2289 6048 2.676076 CTGTTGTAATGCTGCCCAAAC 58.324 47.619 0.00 0.00 0.00 2.93
2316 6102 9.713684 TTGGAGGTGATCTAATGGAATTTTATT 57.286 29.630 0.00 0.00 37.87 1.40
2597 6448 9.730420 GTTAACTGATTTGTTGTGTCACTTAAT 57.270 29.630 4.27 0.00 0.00 1.40
2607 6521 7.935520 TGTTGTGTCACTTAATTGATTTGCTA 58.064 30.769 4.27 0.00 0.00 3.49
2798 6768 3.257624 TCCCATCATCGACAGATCTCATG 59.742 47.826 0.00 0.00 34.23 3.07
2822 6792 1.653609 TGCATTCGTCGACAGATTTCG 59.346 47.619 17.16 0.00 40.53 3.46
2913 6883 3.201708 GTCCACCTCTACCTAGTGACCTA 59.798 52.174 0.00 0.00 33.21 3.08
3004 6975 0.329596 GGAATGCCTCCAGGAAGTGT 59.670 55.000 0.00 0.00 44.67 3.55
3005 6976 1.680249 GGAATGCCTCCAGGAAGTGTC 60.680 57.143 0.00 0.00 44.67 3.67
3074 7045 0.618968 TCTCTCCCTCCTTCTTGCCC 60.619 60.000 0.00 0.00 0.00 5.36
3079 7050 0.326618 CCCTCCTTCTTGCCCCTCTA 60.327 60.000 0.00 0.00 0.00 2.43
3080 7051 1.697291 CCCTCCTTCTTGCCCCTCTAT 60.697 57.143 0.00 0.00 0.00 1.98
3082 7053 2.122768 CTCCTTCTTGCCCCTCTATGT 58.877 52.381 0.00 0.00 0.00 2.29
3206 7178 1.678101 GGTTTGACTGCTGTTTCTGCT 59.322 47.619 0.00 0.00 0.00 4.24
3214 7186 1.075374 TGCTGTTTCTGCTAATGGGGT 59.925 47.619 0.00 0.00 0.00 4.95
3235 7214 6.239772 GGGGTGTGCTTTATATAGTATGGTGA 60.240 42.308 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.148279 ACATCTCCTCCCGGCGAC 61.148 66.667 9.30 0.00 0.00 5.19
2 3 3.147595 CACATCTCCTCCCGGCGA 61.148 66.667 9.30 0.00 0.00 5.54
3 4 4.227134 CCACATCTCCTCCCGGCG 62.227 72.222 0.00 0.00 0.00 6.46
4 5 3.866582 CCCACATCTCCTCCCGGC 61.867 72.222 0.00 0.00 0.00 6.13
5 6 2.041922 TCCCACATCTCCTCCCGG 60.042 66.667 0.00 0.00 0.00 5.73
6 7 2.801631 GCTCCCACATCTCCTCCCG 61.802 68.421 0.00 0.00 0.00 5.14
7 8 2.447714 GGCTCCCACATCTCCTCCC 61.448 68.421 0.00 0.00 0.00 4.30
8 9 1.274703 TTGGCTCCCACATCTCCTCC 61.275 60.000 0.00 0.00 30.78 4.30
9 10 0.179936 CTTGGCTCCCACATCTCCTC 59.820 60.000 0.00 0.00 30.78 3.71
10 11 0.548682 ACTTGGCTCCCACATCTCCT 60.549 55.000 0.00 0.00 30.78 3.69
11 12 0.329596 AACTTGGCTCCCACATCTCC 59.670 55.000 0.00 0.00 30.78 3.71
12 13 1.457346 CAACTTGGCTCCCACATCTC 58.543 55.000 0.00 0.00 30.78 2.75
13 14 0.038744 CCAACTTGGCTCCCACATCT 59.961 55.000 0.00 0.00 30.78 2.90
14 15 2.571548 CCAACTTGGCTCCCACATC 58.428 57.895 0.00 0.00 30.78 3.06
15 16 4.850193 CCAACTTGGCTCCCACAT 57.150 55.556 0.00 0.00 30.78 3.21
24 25 1.068333 CATTTCCAGTCGCCAACTTGG 60.068 52.381 3.10 3.10 41.55 3.61
25 26 1.068333 CCATTTCCAGTCGCCAACTTG 60.068 52.381 0.00 0.00 35.45 3.16
26 27 1.247567 CCATTTCCAGTCGCCAACTT 58.752 50.000 0.00 0.00 35.45 2.66
27 28 0.609131 CCCATTTCCAGTCGCCAACT 60.609 55.000 0.00 0.00 39.44 3.16
28 29 0.608035 TCCCATTTCCAGTCGCCAAC 60.608 55.000 0.00 0.00 0.00 3.77
29 30 0.331278 ATCCCATTTCCAGTCGCCAA 59.669 50.000 0.00 0.00 0.00 4.52
30 31 0.394216 CATCCCATTTCCAGTCGCCA 60.394 55.000 0.00 0.00 0.00 5.69
31 32 0.107214 TCATCCCATTTCCAGTCGCC 60.107 55.000 0.00 0.00 0.00 5.54
32 33 1.017387 GTCATCCCATTTCCAGTCGC 58.983 55.000 0.00 0.00 0.00 5.19
33 34 1.290203 CGTCATCCCATTTCCAGTCG 58.710 55.000 0.00 0.00 0.00 4.18
34 35 1.209504 TCCGTCATCCCATTTCCAGTC 59.790 52.381 0.00 0.00 0.00 3.51
35 36 1.285280 TCCGTCATCCCATTTCCAGT 58.715 50.000 0.00 0.00 0.00 4.00
36 37 2.292267 CTTCCGTCATCCCATTTCCAG 58.708 52.381 0.00 0.00 0.00 3.86
37 38 1.064758 CCTTCCGTCATCCCATTTCCA 60.065 52.381 0.00 0.00 0.00 3.53
38 39 1.211949 TCCTTCCGTCATCCCATTTCC 59.788 52.381 0.00 0.00 0.00 3.13
39 40 2.710096 TCCTTCCGTCATCCCATTTC 57.290 50.000 0.00 0.00 0.00 2.17
40 41 2.357154 CCTTCCTTCCGTCATCCCATTT 60.357 50.000 0.00 0.00 0.00 2.32
41 42 1.212935 CCTTCCTTCCGTCATCCCATT 59.787 52.381 0.00 0.00 0.00 3.16
42 43 0.839946 CCTTCCTTCCGTCATCCCAT 59.160 55.000 0.00 0.00 0.00 4.00
43 44 0.252513 TCCTTCCTTCCGTCATCCCA 60.253 55.000 0.00 0.00 0.00 4.37
44 45 0.909623 TTCCTTCCTTCCGTCATCCC 59.090 55.000 0.00 0.00 0.00 3.85
45 46 1.134371 CCTTCCTTCCTTCCGTCATCC 60.134 57.143 0.00 0.00 0.00 3.51
46 47 1.555533 ACCTTCCTTCCTTCCGTCATC 59.444 52.381 0.00 0.00 0.00 2.92
47 48 1.555533 GACCTTCCTTCCTTCCGTCAT 59.444 52.381 0.00 0.00 0.00 3.06
48 49 0.974383 GACCTTCCTTCCTTCCGTCA 59.026 55.000 0.00 0.00 0.00 4.35
49 50 1.205179 GAGACCTTCCTTCCTTCCGTC 59.795 57.143 0.00 0.00 0.00 4.79
50 51 1.203199 AGAGACCTTCCTTCCTTCCGT 60.203 52.381 0.00 0.00 0.00 4.69
51 52 1.562783 AGAGACCTTCCTTCCTTCCG 58.437 55.000 0.00 0.00 0.00 4.30
52 53 3.620427 GAAGAGACCTTCCTTCCTTCC 57.380 52.381 0.00 0.00 42.24 3.46
61 62 2.544069 CGATTAGCCGGAAGAGACCTTC 60.544 54.545 5.05 0.00 46.19 3.46
62 63 1.409427 CGATTAGCCGGAAGAGACCTT 59.591 52.381 5.05 0.00 34.81 3.50
63 64 1.033574 CGATTAGCCGGAAGAGACCT 58.966 55.000 5.05 0.00 0.00 3.85
64 65 0.745468 ACGATTAGCCGGAAGAGACC 59.255 55.000 5.05 0.00 0.00 3.85
65 66 2.601741 CGTACGATTAGCCGGAAGAGAC 60.602 54.545 10.44 0.00 0.00 3.36
66 67 1.600957 CGTACGATTAGCCGGAAGAGA 59.399 52.381 10.44 0.00 0.00 3.10
67 68 1.332997 ACGTACGATTAGCCGGAAGAG 59.667 52.381 24.41 0.00 0.00 2.85
68 69 1.331756 GACGTACGATTAGCCGGAAGA 59.668 52.381 24.41 0.00 0.00 2.87
69 70 1.332997 AGACGTACGATTAGCCGGAAG 59.667 52.381 24.41 0.00 0.00 3.46
70 71 1.331756 GAGACGTACGATTAGCCGGAA 59.668 52.381 24.41 0.00 0.00 4.30
71 72 0.940126 GAGACGTACGATTAGCCGGA 59.060 55.000 24.41 0.00 0.00 5.14
72 73 0.040603 GGAGACGTACGATTAGCCGG 60.041 60.000 24.41 0.00 0.00 6.13
73 74 3.451504 GGAGACGTACGATTAGCCG 57.548 57.895 24.41 0.00 0.00 5.52
86 87 1.790838 CGATCACGAACTGACGGAGAC 60.791 57.143 0.00 0.00 42.66 3.36
87 88 0.446616 CGATCACGAACTGACGGAGA 59.553 55.000 0.00 0.00 42.66 3.71
88 89 0.168348 ACGATCACGAACTGACGGAG 59.832 55.000 0.00 0.00 42.66 4.63
89 90 0.109919 CACGATCACGAACTGACGGA 60.110 55.000 0.00 0.00 42.66 4.69
90 91 1.674611 GCACGATCACGAACTGACGG 61.675 60.000 0.00 0.00 42.66 4.79
91 92 1.001745 TGCACGATCACGAACTGACG 61.002 55.000 0.00 0.00 42.66 4.35
92 93 0.435008 GTGCACGATCACGAACTGAC 59.565 55.000 0.00 0.00 42.66 3.51
93 94 0.666274 GGTGCACGATCACGAACTGA 60.666 55.000 11.45 0.00 42.66 3.41
94 95 0.667487 AGGTGCACGATCACGAACTG 60.667 55.000 11.45 0.00 42.66 3.16
95 96 0.885879 TAGGTGCACGATCACGAACT 59.114 50.000 11.45 1.08 42.66 3.01
96 97 1.269166 CTAGGTGCACGATCACGAAC 58.731 55.000 11.45 0.00 42.66 3.95
97 98 0.457853 GCTAGGTGCACGATCACGAA 60.458 55.000 11.45 0.00 43.06 3.85
98 99 1.138883 GCTAGGTGCACGATCACGA 59.861 57.895 11.45 0.00 43.06 4.35
99 100 0.380733 TAGCTAGGTGCACGATCACG 59.619 55.000 11.45 0.00 45.94 4.35
100 101 2.294791 AGATAGCTAGGTGCACGATCAC 59.705 50.000 11.45 0.00 45.94 3.06
101 102 2.294512 CAGATAGCTAGGTGCACGATCA 59.705 50.000 11.45 0.00 45.94 2.92
102 103 2.294791 ACAGATAGCTAGGTGCACGATC 59.705 50.000 11.45 6.57 45.94 3.69
103 104 2.311463 ACAGATAGCTAGGTGCACGAT 58.689 47.619 11.45 4.46 45.94 3.73
104 105 1.763968 ACAGATAGCTAGGTGCACGA 58.236 50.000 11.45 0.00 45.94 4.35
105 106 2.196749 CAACAGATAGCTAGGTGCACG 58.803 52.381 11.45 0.00 45.94 5.34
106 107 2.093447 ACCAACAGATAGCTAGGTGCAC 60.093 50.000 8.80 8.80 45.94 4.57
107 108 2.168521 GACCAACAGATAGCTAGGTGCA 59.831 50.000 4.27 0.00 45.94 4.57
108 109 2.483889 GGACCAACAGATAGCTAGGTGC 60.484 54.545 4.27 4.34 43.29 5.01
109 110 2.103263 GGGACCAACAGATAGCTAGGTG 59.897 54.545 4.27 4.44 0.00 4.00
110 111 2.292918 TGGGACCAACAGATAGCTAGGT 60.293 50.000 0.00 0.00 0.00 3.08
111 112 2.103263 GTGGGACCAACAGATAGCTAGG 59.897 54.545 0.00 0.00 0.00 3.02
112 113 2.103263 GGTGGGACCAACAGATAGCTAG 59.897 54.545 0.25 0.00 38.42 3.42
113 114 2.116238 GGTGGGACCAACAGATAGCTA 58.884 52.381 0.25 0.00 38.42 3.32
114 115 0.912486 GGTGGGACCAACAGATAGCT 59.088 55.000 0.25 0.00 38.42 3.32
115 116 3.478540 GGTGGGACCAACAGATAGC 57.521 57.895 0.25 0.00 38.42 2.97
129 130 3.814268 CGCAGCCCGATTTGGTGG 61.814 66.667 0.00 0.00 40.02 4.61
130 131 3.814268 CCGCAGCCCGATTTGGTG 61.814 66.667 0.00 0.00 40.02 4.17
131 132 4.344865 ACCGCAGCCCGATTTGGT 62.345 61.111 0.00 0.00 40.02 3.67
132 133 3.814268 CACCGCAGCCCGATTTGG 61.814 66.667 0.00 0.00 40.02 3.28
133 134 2.141122 AAACACCGCAGCCCGATTTG 62.141 55.000 0.00 0.00 40.02 2.32
134 135 1.460273 AAAACACCGCAGCCCGATTT 61.460 50.000 0.00 0.00 40.02 2.17
135 136 1.901464 AAAACACCGCAGCCCGATT 60.901 52.632 0.00 0.00 40.02 3.34
136 137 2.282180 AAAACACCGCAGCCCGAT 60.282 55.556 0.00 0.00 40.02 4.18
137 138 3.283684 CAAAACACCGCAGCCCGA 61.284 61.111 0.00 0.00 40.02 5.14
138 139 3.536498 GACAAAACACCGCAGCCCG 62.536 63.158 0.00 0.00 0.00 6.13
139 140 2.335011 GACAAAACACCGCAGCCC 59.665 61.111 0.00 0.00 0.00 5.19
140 141 2.051345 CGACAAAACACCGCAGCC 60.051 61.111 0.00 0.00 0.00 4.85
145 146 1.843753 GTCAAAAGCGACAAAACACCG 59.156 47.619 0.00 0.00 35.88 4.94
146 147 1.843753 CGTCAAAAGCGACAAAACACC 59.156 47.619 0.00 0.00 35.54 4.16
147 148 2.275253 CACGTCAAAAGCGACAAAACAC 59.725 45.455 0.00 0.00 35.54 3.32
148 149 2.510874 CACGTCAAAAGCGACAAAACA 58.489 42.857 0.00 0.00 35.54 2.83
149 150 1.843753 CCACGTCAAAAGCGACAAAAC 59.156 47.619 0.00 0.00 35.54 2.43
150 151 1.202200 CCCACGTCAAAAGCGACAAAA 60.202 47.619 0.00 0.00 35.54 2.44
151 152 0.378962 CCCACGTCAAAAGCGACAAA 59.621 50.000 0.00 0.00 35.54 2.83
152 153 0.745128 ACCCACGTCAAAAGCGACAA 60.745 50.000 0.00 0.00 35.54 3.18
153 154 1.153329 ACCCACGTCAAAAGCGACA 60.153 52.632 0.00 0.00 35.54 4.35
154 155 1.155424 TCACCCACGTCAAAAGCGAC 61.155 55.000 0.00 0.00 0.00 5.19
155 156 1.144276 TCACCCACGTCAAAAGCGA 59.856 52.632 0.00 0.00 0.00 4.93
156 157 1.278637 GTCACCCACGTCAAAAGCG 59.721 57.895 0.00 0.00 0.00 4.68
157 158 1.278637 CGTCACCCACGTCAAAAGC 59.721 57.895 0.00 0.00 44.07 3.51
166 167 2.073816 CCAATCAGTTACGTCACCCAC 58.926 52.381 0.00 0.00 0.00 4.61
167 168 1.002659 CCCAATCAGTTACGTCACCCA 59.997 52.381 0.00 0.00 0.00 4.51
168 169 1.002773 ACCCAATCAGTTACGTCACCC 59.997 52.381 0.00 0.00 0.00 4.61
169 170 2.289195 TGACCCAATCAGTTACGTCACC 60.289 50.000 0.00 0.00 31.91 4.02
170 171 3.034721 TGACCCAATCAGTTACGTCAC 57.965 47.619 0.00 0.00 31.91 3.67
171 172 3.259625 TGATGACCCAATCAGTTACGTCA 59.740 43.478 0.00 0.00 41.91 4.35
172 173 3.857052 TGATGACCCAATCAGTTACGTC 58.143 45.455 0.00 0.00 41.91 4.34
173 174 3.973206 TGATGACCCAATCAGTTACGT 57.027 42.857 0.00 0.00 41.91 3.57
174 175 3.809832 GGATGATGACCCAATCAGTTACG 59.190 47.826 0.00 0.00 41.91 3.18
175 176 5.041191 AGGATGATGACCCAATCAGTTAC 57.959 43.478 0.00 0.00 41.91 2.50
176 177 4.721274 TGAGGATGATGACCCAATCAGTTA 59.279 41.667 0.00 0.00 41.91 2.24
177 178 3.524789 TGAGGATGATGACCCAATCAGTT 59.475 43.478 0.00 0.00 41.91 3.16
178 179 3.117745 TGAGGATGATGACCCAATCAGT 58.882 45.455 0.00 0.00 41.91 3.41
179 180 3.741249 CTGAGGATGATGACCCAATCAG 58.259 50.000 0.00 0.00 41.91 2.90
180 181 2.158711 GCTGAGGATGATGACCCAATCA 60.159 50.000 0.00 0.00 43.13 2.57
181 182 2.502295 GCTGAGGATGATGACCCAATC 58.498 52.381 0.00 0.00 0.00 2.67
182 183 1.202734 CGCTGAGGATGATGACCCAAT 60.203 52.381 0.00 0.00 0.00 3.16
183 184 0.178767 CGCTGAGGATGATGACCCAA 59.821 55.000 0.00 0.00 0.00 4.12
184 185 1.689243 CCGCTGAGGATGATGACCCA 61.689 60.000 0.00 0.00 45.00 4.51
185 186 1.070445 CCGCTGAGGATGATGACCC 59.930 63.158 0.00 0.00 45.00 4.46
186 187 1.596477 GCCGCTGAGGATGATGACC 60.596 63.158 0.09 0.00 45.00 4.02
187 188 0.879400 CTGCCGCTGAGGATGATGAC 60.879 60.000 0.09 0.00 45.00 3.06
188 189 1.444672 CTGCCGCTGAGGATGATGA 59.555 57.895 0.09 0.00 45.00 2.92
189 190 1.597302 CCTGCCGCTGAGGATGATG 60.597 63.158 0.09 0.00 45.00 3.07
190 191 2.827423 CCTGCCGCTGAGGATGAT 59.173 61.111 0.09 0.00 45.00 2.45
191 192 4.166888 GCCTGCCGCTGAGGATGA 62.167 66.667 0.09 0.00 45.00 2.92
204 205 1.779061 ATTATACCAGCCGGGGCCTG 61.779 60.000 5.01 5.01 42.91 4.85
205 206 1.463410 ATTATACCAGCCGGGGCCT 60.463 57.895 2.18 0.00 42.91 5.19
206 207 1.303317 CATTATACCAGCCGGGGCC 60.303 63.158 2.18 0.00 42.91 5.80
207 208 0.605589 GTCATTATACCAGCCGGGGC 60.606 60.000 2.18 0.18 42.91 5.80
208 209 0.320421 CGTCATTATACCAGCCGGGG 60.320 60.000 2.18 0.00 42.91 5.73
209 210 0.391597 ACGTCATTATACCAGCCGGG 59.608 55.000 2.18 0.00 44.81 5.73
210 211 2.234300 AACGTCATTATACCAGCCGG 57.766 50.000 0.00 0.00 38.77 6.13
211 212 2.933906 ACAAACGTCATTATACCAGCCG 59.066 45.455 0.00 0.00 0.00 5.52
212 213 4.634443 AGAACAAACGTCATTATACCAGCC 59.366 41.667 0.00 0.00 0.00 4.85
213 214 5.350365 TGAGAACAAACGTCATTATACCAGC 59.650 40.000 0.00 0.00 0.00 4.85
214 215 6.455646 GCTGAGAACAAACGTCATTATACCAG 60.456 42.308 0.00 0.00 0.00 4.00
215 216 5.350365 GCTGAGAACAAACGTCATTATACCA 59.650 40.000 0.00 0.00 0.00 3.25
216 217 5.350365 TGCTGAGAACAAACGTCATTATACC 59.650 40.000 0.00 0.00 0.00 2.73
217 218 6.403333 TGCTGAGAACAAACGTCATTATAC 57.597 37.500 0.00 0.00 0.00 1.47
218 219 7.333174 TCAATGCTGAGAACAAACGTCATTATA 59.667 33.333 0.00 0.00 0.00 0.98
219 220 6.149308 TCAATGCTGAGAACAAACGTCATTAT 59.851 34.615 0.00 0.00 0.00 1.28
220 221 5.468409 TCAATGCTGAGAACAAACGTCATTA 59.532 36.000 0.00 0.00 0.00 1.90
221 222 4.275689 TCAATGCTGAGAACAAACGTCATT 59.724 37.500 0.00 0.00 0.00 2.57
222 223 3.814842 TCAATGCTGAGAACAAACGTCAT 59.185 39.130 0.00 0.00 0.00 3.06
223 224 3.002246 GTCAATGCTGAGAACAAACGTCA 59.998 43.478 0.00 0.00 30.14 4.35
224 225 3.545633 GTCAATGCTGAGAACAAACGTC 58.454 45.455 0.00 0.00 30.14 4.34
225 226 2.032894 CGTCAATGCTGAGAACAAACGT 60.033 45.455 0.00 0.00 30.14 3.99
226 227 2.032894 ACGTCAATGCTGAGAACAAACG 60.033 45.455 0.00 0.00 30.14 3.60
227 228 3.609103 ACGTCAATGCTGAGAACAAAC 57.391 42.857 0.00 0.00 30.14 2.93
228 229 5.389411 CGATTACGTCAATGCTGAGAACAAA 60.389 40.000 0.00 0.00 30.14 2.83
229 230 4.091365 CGATTACGTCAATGCTGAGAACAA 59.909 41.667 0.00 0.00 30.14 2.83
230 231 3.612423 CGATTACGTCAATGCTGAGAACA 59.388 43.478 0.00 0.00 30.14 3.18
231 232 3.857665 TCGATTACGTCAATGCTGAGAAC 59.142 43.478 0.00 0.00 40.69 3.01
232 233 4.104696 TCGATTACGTCAATGCTGAGAA 57.895 40.909 0.00 0.00 40.69 2.87
233 234 3.775661 TCGATTACGTCAATGCTGAGA 57.224 42.857 0.00 0.00 40.69 3.27
234 235 4.318333 CCAATCGATTACGTCAATGCTGAG 60.318 45.833 10.97 0.00 40.69 3.35
235 236 3.555547 CCAATCGATTACGTCAATGCTGA 59.444 43.478 10.97 0.00 40.69 4.26
236 237 3.303329 CCCAATCGATTACGTCAATGCTG 60.303 47.826 10.97 0.00 40.69 4.41
237 238 2.872245 CCCAATCGATTACGTCAATGCT 59.128 45.455 10.97 0.00 40.69 3.79
238 239 2.612212 ACCCAATCGATTACGTCAATGC 59.388 45.455 10.97 0.00 40.69 3.56
239 240 3.868661 TGACCCAATCGATTACGTCAATG 59.131 43.478 25.64 9.05 40.69 2.82
240 241 4.131649 TGACCCAATCGATTACGTCAAT 57.868 40.909 25.64 5.75 40.69 2.57
241 242 3.596310 TGACCCAATCGATTACGTCAA 57.404 42.857 25.64 15.29 40.69 3.18
242 243 3.383505 AGATGACCCAATCGATTACGTCA 59.616 43.478 27.99 27.99 40.69 4.35
243 244 3.978687 AGATGACCCAATCGATTACGTC 58.021 45.455 21.45 21.45 40.69 4.34
244 245 4.402056 AAGATGACCCAATCGATTACGT 57.598 40.909 10.97 9.57 40.69 3.57
245 246 4.085055 CGAAAGATGACCCAATCGATTACG 60.085 45.833 10.97 6.22 41.26 3.18
246 247 4.211374 CCGAAAGATGACCCAATCGATTAC 59.789 45.833 10.97 3.88 32.38 1.89
247 248 4.100344 TCCGAAAGATGACCCAATCGATTA 59.900 41.667 10.97 0.00 32.38 1.75
248 249 3.118408 TCCGAAAGATGACCCAATCGATT 60.118 43.478 4.39 4.39 32.38 3.34
249 250 2.434336 TCCGAAAGATGACCCAATCGAT 59.566 45.455 0.00 0.00 32.38 3.59
250 251 1.828595 TCCGAAAGATGACCCAATCGA 59.171 47.619 0.00 0.00 32.38 3.59
251 252 2.205074 CTCCGAAAGATGACCCAATCG 58.795 52.381 0.00 0.00 0.00 3.34
252 253 2.565841 CCTCCGAAAGATGACCCAATC 58.434 52.381 0.00 0.00 0.00 2.67
253 254 1.408822 GCCTCCGAAAGATGACCCAAT 60.409 52.381 0.00 0.00 0.00 3.16
254 255 0.035439 GCCTCCGAAAGATGACCCAA 60.035 55.000 0.00 0.00 0.00 4.12
255 256 1.602237 GCCTCCGAAAGATGACCCA 59.398 57.895 0.00 0.00 0.00 4.51
256 257 1.521681 CGCCTCCGAAAGATGACCC 60.522 63.158 0.00 0.00 36.29 4.46
257 258 1.515954 TCGCCTCCGAAAGATGACC 59.484 57.895 0.00 0.00 41.17 4.02
266 267 1.141881 GAAGCAGATTCGCCTCCGA 59.858 57.895 0.00 0.00 42.66 4.55
267 268 1.884926 GGAAGCAGATTCGCCTCCG 60.885 63.158 0.00 0.00 38.95 4.63
268 269 1.884926 CGGAAGCAGATTCGCCTCC 60.885 63.158 7.61 7.61 38.87 4.30
269 270 1.884926 CCGGAAGCAGATTCGCCTC 60.885 63.158 0.00 0.00 38.95 4.70
270 271 1.327690 TACCGGAAGCAGATTCGCCT 61.328 55.000 9.46 0.00 38.95 5.52
271 272 0.876342 CTACCGGAAGCAGATTCGCC 60.876 60.000 9.46 0.00 38.95 5.54
272 273 0.102481 TCTACCGGAAGCAGATTCGC 59.898 55.000 9.46 0.00 38.95 4.70
273 274 2.579207 TTCTACCGGAAGCAGATTCG 57.421 50.000 9.46 0.00 38.95 3.34
274 275 3.134458 CCATTCTACCGGAAGCAGATTC 58.866 50.000 9.46 0.00 37.36 2.52
275 276 2.746472 GCCATTCTACCGGAAGCAGATT 60.746 50.000 9.46 0.00 37.36 2.40
276 277 1.202698 GCCATTCTACCGGAAGCAGAT 60.203 52.381 9.46 0.00 37.36 2.90
277 278 0.178068 GCCATTCTACCGGAAGCAGA 59.822 55.000 9.46 1.64 37.36 4.26
278 279 0.179000 AGCCATTCTACCGGAAGCAG 59.821 55.000 9.46 0.00 37.36 4.24
279 280 0.107703 CAGCCATTCTACCGGAAGCA 60.108 55.000 9.46 0.00 37.36 3.91
280 281 1.440145 GCAGCCATTCTACCGGAAGC 61.440 60.000 9.46 0.00 37.36 3.86
281 282 0.815615 GGCAGCCATTCTACCGGAAG 60.816 60.000 9.46 0.00 37.36 3.46
282 283 1.223487 GGCAGCCATTCTACCGGAA 59.777 57.895 9.46 0.00 38.41 4.30
283 284 1.992834 TGGCAGCCATTCTACCGGA 60.993 57.895 11.22 0.00 30.31 5.14
284 285 1.819632 GTGGCAGCCATTCTACCGG 60.820 63.158 19.75 0.00 35.28 5.28
285 286 1.091771 CAGTGGCAGCCATTCTACCG 61.092 60.000 19.75 0.00 35.28 4.02
286 287 1.379642 GCAGTGGCAGCCATTCTACC 61.380 60.000 19.75 2.92 40.72 3.18
287 288 0.393537 AGCAGTGGCAGCCATTCTAC 60.394 55.000 19.75 5.74 44.61 2.59
288 289 1.203237 TAGCAGTGGCAGCCATTCTA 58.797 50.000 19.75 15.66 44.61 2.10
289 290 0.549950 ATAGCAGTGGCAGCCATTCT 59.450 50.000 19.75 16.67 44.61 2.40
290 291 1.396653 AATAGCAGTGGCAGCCATTC 58.603 50.000 19.75 5.53 44.61 2.67
291 292 1.856629 AAATAGCAGTGGCAGCCATT 58.143 45.000 19.75 11.40 44.61 3.16
292 293 2.734755 TAAATAGCAGTGGCAGCCAT 57.265 45.000 19.75 3.50 44.61 4.40
293 294 2.734755 ATAAATAGCAGTGGCAGCCA 57.265 45.000 11.22 11.22 44.61 4.75
294 295 5.712152 ATAAATAAATAGCAGTGGCAGCC 57.288 39.130 3.66 3.66 44.61 4.85
295 296 6.738114 TCAATAAATAAATAGCAGTGGCAGC 58.262 36.000 0.00 0.00 44.61 5.25
296 297 7.934457 ACTCAATAAATAAATAGCAGTGGCAG 58.066 34.615 0.00 0.00 44.61 4.85
297 298 7.880160 ACTCAATAAATAAATAGCAGTGGCA 57.120 32.000 0.00 0.00 44.61 4.92
311 312 8.082242 GGACACAGTGCTTTTAACTCAATAAAT 58.918 33.333 0.00 0.00 0.00 1.40
312 313 7.284489 AGGACACAGTGCTTTTAACTCAATAAA 59.716 33.333 0.00 0.00 27.37 1.40
313 314 6.770785 AGGACACAGTGCTTTTAACTCAATAA 59.229 34.615 0.00 0.00 27.37 1.40
314 315 6.296026 AGGACACAGTGCTTTTAACTCAATA 58.704 36.000 0.00 0.00 27.37 1.90
315 316 5.133221 AGGACACAGTGCTTTTAACTCAAT 58.867 37.500 0.00 0.00 27.37 2.57
321 322 7.308348 GCAAGTTATAGGACACAGTGCTTTTAA 60.308 37.037 0.00 0.00 35.47 1.52
330 331 4.160439 TCCTGAGCAAGTTATAGGACACAG 59.840 45.833 0.00 0.00 32.85 3.66
332 333 4.737855 TCCTGAGCAAGTTATAGGACAC 57.262 45.455 0.00 0.00 32.85 3.67
333 334 6.782494 TCATATCCTGAGCAAGTTATAGGACA 59.218 38.462 0.00 0.00 40.11 4.02
340 343 9.716531 CTAAATCATCATATCCTGAGCAAGTTA 57.283 33.333 0.00 0.00 37.28 2.24
378 381 5.888161 GTGGGACTGGATAGATTCATTTTGT 59.112 40.000 0.00 0.00 0.00 2.83
386 389 4.848357 CAAGTTGTGGGACTGGATAGATT 58.152 43.478 0.00 0.00 0.00 2.40
388 391 2.027192 GCAAGTTGTGGGACTGGATAGA 60.027 50.000 4.48 0.00 0.00 1.98
392 395 0.179020 CTGCAAGTTGTGGGACTGGA 60.179 55.000 4.48 0.00 0.00 3.86
400 403 0.866906 CACGTTGGCTGCAAGTTGTG 60.867 55.000 4.48 0.00 35.30 3.33
402 405 1.945662 GCACGTTGGCTGCAAGTTG 60.946 57.895 0.50 0.00 35.30 3.16
403 406 2.412937 GCACGTTGGCTGCAAGTT 59.587 55.556 0.50 0.00 35.30 2.66
416 419 3.521524 GTCTAAGACCAAAGTTGCACG 57.478 47.619 0.00 0.00 0.00 5.34
431 434 3.089284 TGTCGAGCTCTGATTGGTCTAA 58.911 45.455 12.85 0.00 0.00 2.10
433 436 1.550327 TGTCGAGCTCTGATTGGTCT 58.450 50.000 12.85 0.00 0.00 3.85
464 467 2.763215 CTAACCAGCTTGGGCCCA 59.237 61.111 24.45 24.45 43.37 5.36
470 473 2.476051 CGTGCGCTAACCAGCTTG 59.524 61.111 9.73 0.00 46.26 4.01
475 478 1.448922 AAAAAGGCGTGCGCTAACCA 61.449 50.000 16.21 0.00 41.60 3.67
495 498 1.830477 GAAAGGCATGGGGTATTTGCA 59.170 47.619 0.00 0.00 38.12 4.08
496 499 1.138859 GGAAAGGCATGGGGTATTTGC 59.861 52.381 0.00 0.00 35.64 3.68
497 500 2.750814 AGGAAAGGCATGGGGTATTTG 58.249 47.619 0.00 0.00 0.00 2.32
498 501 3.106827 CAAGGAAAGGCATGGGGTATTT 58.893 45.455 0.00 0.00 0.00 1.40
500 503 1.645919 ACAAGGAAAGGCATGGGGTAT 59.354 47.619 0.00 0.00 0.00 2.73
501 504 1.080638 ACAAGGAAAGGCATGGGGTA 58.919 50.000 0.00 0.00 0.00 3.69
502 505 0.190815 AACAAGGAAAGGCATGGGGT 59.809 50.000 0.00 0.00 0.00 4.95
503 506 2.230130 TAACAAGGAAAGGCATGGGG 57.770 50.000 0.00 0.00 0.00 4.96
507 510 3.769300 GGGTTCATAACAAGGAAAGGCAT 59.231 43.478 0.00 0.00 0.00 4.40
519 522 2.094762 AGTGAGTGCGGGTTCATAAC 57.905 50.000 0.00 0.00 0.00 1.89
521 524 3.965379 TTTAGTGAGTGCGGGTTCATA 57.035 42.857 0.00 0.00 0.00 2.15
524 527 2.032290 GTGTTTTAGTGAGTGCGGGTTC 60.032 50.000 0.00 0.00 0.00 3.62
530 533 5.438761 AATTCAGGTGTTTTAGTGAGTGC 57.561 39.130 0.00 0.00 0.00 4.40
540 543 8.482128 TCTCCAAAACAATTAATTCAGGTGTTT 58.518 29.630 8.67 8.67 42.58 2.83
541 544 7.926018 GTCTCCAAAACAATTAATTCAGGTGTT 59.074 33.333 0.00 0.00 33.97 3.32
545 548 6.868339 GTGGTCTCCAAAACAATTAATTCAGG 59.132 38.462 0.00 0.00 34.18 3.86
547 550 6.442952 CGTGGTCTCCAAAACAATTAATTCA 58.557 36.000 0.00 0.00 34.18 2.57
993 996 0.893270 TCCACGAAACCATGGGCTTG 60.893 55.000 18.09 8.81 36.56 4.01
994 997 0.609131 CTCCACGAAACCATGGGCTT 60.609 55.000 18.09 8.99 36.56 4.35
995 998 1.002134 CTCCACGAAACCATGGGCT 60.002 57.895 18.09 1.35 36.56 5.19
996 999 1.303317 ACTCCACGAAACCATGGGC 60.303 57.895 18.09 3.98 36.56 5.36
997 1000 0.036164 TCACTCCACGAAACCATGGG 59.964 55.000 18.09 0.00 36.56 4.00
1175 1181 2.697751 CAGGTAGATCTACTGCAAGGCT 59.302 50.000 27.68 14.35 39.30 4.58
1183 1189 6.488683 GCTCACATCTAACAGGTAGATCTACT 59.511 42.308 27.68 13.74 44.91 2.57
1217 1223 1.956477 GGCAACCAACTTCTCACACAT 59.044 47.619 0.00 0.00 0.00 3.21
1259 1265 0.521735 GCACAACCCACGAATCTTCC 59.478 55.000 0.00 0.00 0.00 3.46
1268 1274 0.534873 ACCTTTTGTGCACAACCCAC 59.465 50.000 31.17 0.00 35.28 4.61
1368 1648 9.414295 CACAAATGAAGTTCAATCACATATGTT 57.586 29.630 10.14 0.00 0.00 2.71
1493 1785 7.759489 TCACAGTAACCTTTGAGCATTAATT 57.241 32.000 0.00 0.00 0.00 1.40
1524 3384 3.634397 ACTGACACCATATCCAGGTTG 57.366 47.619 0.00 0.00 37.23 3.77
1612 3554 7.862372 TCAAGATTCAGTTAACTGCACAAAATC 59.138 33.333 27.49 26.15 43.46 2.17
1635 3596 9.243637 GCACAAAGTTCAATAACACTAAATCAA 57.756 29.630 0.00 0.00 38.12 2.57
1636 3597 8.409371 TGCACAAAGTTCAATAACACTAAATCA 58.591 29.630 0.00 0.00 38.12 2.57
1637 3598 8.795786 TGCACAAAGTTCAATAACACTAAATC 57.204 30.769 0.00 0.00 38.12 2.17
1638 3599 8.413229 ACTGCACAAAGTTCAATAACACTAAAT 58.587 29.630 0.00 0.00 38.12 1.40
1639 3600 7.767261 ACTGCACAAAGTTCAATAACACTAAA 58.233 30.769 0.00 0.00 38.12 1.85
1640 3601 7.328277 ACTGCACAAAGTTCAATAACACTAA 57.672 32.000 0.00 0.00 38.12 2.24
1641 3602 6.935741 ACTGCACAAAGTTCAATAACACTA 57.064 33.333 0.00 0.00 38.12 2.74
1642 3603 5.835113 ACTGCACAAAGTTCAATAACACT 57.165 34.783 0.00 0.00 38.12 3.55
1643 3604 7.700656 AGTTAACTGCACAAAGTTCAATAACAC 59.299 33.333 7.48 0.00 40.77 3.32
1644 3605 7.700234 CAGTTAACTGCACAAAGTTCAATAACA 59.300 33.333 22.03 0.00 40.77 2.41
1645 3606 7.913297 TCAGTTAACTGCACAAAGTTCAATAAC 59.087 33.333 27.49 0.00 43.46 1.89
1646 3607 7.990917 TCAGTTAACTGCACAAAGTTCAATAA 58.009 30.769 27.49 4.77 43.46 1.40
1647 3608 7.561021 TCAGTTAACTGCACAAAGTTCAATA 57.439 32.000 27.49 5.38 43.46 1.90
1648 3609 6.449635 TCAGTTAACTGCACAAAGTTCAAT 57.550 33.333 27.49 0.00 43.46 2.57
1649 3610 5.888691 TCAGTTAACTGCACAAAGTTCAA 57.111 34.783 27.49 5.99 43.46 2.69
1650 3611 5.888691 TTCAGTTAACTGCACAAAGTTCA 57.111 34.783 27.49 6.49 43.46 3.18
1651 3612 8.905702 CATTATTCAGTTAACTGCACAAAGTTC 58.094 33.333 27.49 0.00 43.46 3.01
1652 3613 7.382218 GCATTATTCAGTTAACTGCACAAAGTT 59.618 33.333 27.49 6.40 43.46 2.66
1653 3614 6.863126 GCATTATTCAGTTAACTGCACAAAGT 59.137 34.615 27.49 11.59 43.46 2.66
1654 3615 6.862608 TGCATTATTCAGTTAACTGCACAAAG 59.137 34.615 27.49 12.97 43.46 2.77
1655 3616 6.743110 TGCATTATTCAGTTAACTGCACAAA 58.257 32.000 27.49 17.90 43.46 2.83
1656 3617 6.324561 TGCATTATTCAGTTAACTGCACAA 57.675 33.333 27.49 15.36 43.46 3.33
1657 3618 5.956068 TGCATTATTCAGTTAACTGCACA 57.044 34.783 27.49 15.58 43.46 4.57
1658 3619 7.541783 TGAAATGCATTATTCAGTTAACTGCAC 59.458 33.333 27.49 11.72 43.46 4.57
1659 3620 7.600960 TGAAATGCATTATTCAGTTAACTGCA 58.399 30.769 27.49 21.31 43.46 4.41
1660 3621 8.464770 TTGAAATGCATTATTCAGTTAACTGC 57.535 30.769 27.49 16.78 43.46 4.40
1693 3654 7.323420 CCCATCCTAAAATTGAAGAGGAAAAC 58.677 38.462 0.00 0.00 41.37 2.43
1748 3709 1.753368 ATTGAGGAGGCCGCTCTAGC 61.753 60.000 6.40 0.00 37.78 3.42
1792 3753 3.181329 ACCACCTCTTCATACATGTCCA 58.819 45.455 0.00 0.00 0.00 4.02
1810 3771 1.483595 CCTGAGCCTGAGGTTGACCA 61.484 60.000 0.00 0.00 38.89 4.02
1960 3922 2.690778 GCTAGCCTTGTGTTGCCCG 61.691 63.158 2.29 0.00 0.00 6.13
2020 3982 8.812513 ATGAATGTTGGTCAGAGATTTATCAA 57.187 30.769 0.00 0.00 0.00 2.57
2024 3986 6.825213 CCTGATGAATGTTGGTCAGAGATTTA 59.175 38.462 3.00 0.00 40.30 1.40
2063 4025 3.033184 CTCATCCCTCTCTTTCTCTGCT 58.967 50.000 0.00 0.00 0.00 4.24
2177 4146 4.232221 GCTTGAACAAGTCACCAATCATG 58.768 43.478 14.62 0.00 40.45 3.07
2233 5991 3.972638 ACATTCATCTAGCATCTCCCTGT 59.027 43.478 0.00 0.00 0.00 4.00
2234 5992 4.040095 TCACATTCATCTAGCATCTCCCTG 59.960 45.833 0.00 0.00 0.00 4.45
2289 6048 7.651027 AAAATTCCATTAGATCACCTCCAAG 57.349 36.000 0.00 0.00 0.00 3.61
2388 6174 8.523915 TTAGGTCATTGCATCAAAGATAACAT 57.476 30.769 0.00 0.00 0.00 2.71
2389 6175 7.936496 TTAGGTCATTGCATCAAAGATAACA 57.064 32.000 0.00 0.00 0.00 2.41
2433 6236 6.902341 TGAGTGCATCAAAGATAACTCAAAC 58.098 36.000 16.23 0.24 40.63 2.93
2716 6633 7.601073 TGAGTGAATGTATGAGTCAATGTTC 57.399 36.000 0.00 0.76 28.44 3.18
2776 6694 2.949447 TGAGATCTGTCGATGATGGGA 58.051 47.619 0.00 0.00 0.00 4.37
2777 6695 3.586892 CATGAGATCTGTCGATGATGGG 58.413 50.000 0.00 0.00 0.00 4.00
2798 6768 0.721154 TCTGTCGACGAATGCAATGC 59.279 50.000 11.62 0.00 0.00 3.56
2809 6779 7.794880 TCTATCTATGTACGAAATCTGTCGAC 58.205 38.462 9.11 9.11 43.86 4.20
2913 6883 4.910195 GAGGGCAAATTTCCATCCTTTTT 58.090 39.130 9.02 0.00 0.00 1.94
2964 6935 1.760613 CCCTTGGCTCGAACCATAGTA 59.239 52.381 8.68 0.00 40.13 1.82
2969 6940 3.646715 CCCCCTTGGCTCGAACCA 61.647 66.667 2.67 2.67 38.16 3.67
3074 7045 0.105246 AGGGGAGCCAGACATAGAGG 60.105 60.000 0.00 0.00 0.00 3.69
3079 7050 2.693864 CCCAGGGGAGCCAGACAT 60.694 66.667 0.00 0.00 37.50 3.06
3114 7085 2.964209 TGGATCCTGGAGAGGTCATAC 58.036 52.381 14.23 0.00 40.76 2.39
3206 7178 8.325787 CCATACTATATAAAGCACACCCCATTA 58.674 37.037 0.00 0.00 0.00 1.90
3214 7186 7.070696 ACCAGTCACCATACTATATAAAGCACA 59.929 37.037 0.00 0.00 0.00 4.57
3235 7214 2.921834 TCTTCTGCCTACCTACCAGT 57.078 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.