Multiple sequence alignment - TraesCS4B01G199500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G199500 chr4B 100.000 3349 0 0 1535 4883 428027434 428024086 0.000000e+00 6185.0
1 TraesCS4B01G199500 chr4B 100.000 1335 0 0 1 1335 428028968 428027634 0.000000e+00 2466.0
2 TraesCS4B01G199500 chr4B 81.579 494 81 9 4395 4883 491090892 491090404 2.740000e-107 399.0
3 TraesCS4B01G199500 chr4B 100.000 71 0 0 4273 4343 428024767 428024697 1.100000e-26 132.0
4 TraesCS4B01G199500 chr4D 92.016 1791 99 20 2341 4103 347523641 347521867 0.000000e+00 2475.0
5 TraesCS4B01G199500 chr4D 93.737 463 18 5 873 1335 347525340 347524889 0.000000e+00 684.0
6 TraesCS4B01G199500 chr4D 89.981 539 38 8 1535 2065 347524838 347524308 0.000000e+00 682.0
7 TraesCS4B01G199500 chr4D 95.858 169 6 1 2064 2232 347524150 347523983 6.230000e-69 272.0
8 TraesCS4B01G199500 chr4D 84.058 207 25 4 610 816 337426206 337426008 4.990000e-45 193.0
9 TraesCS4B01G199500 chr4D 95.876 97 3 1 2246 2341 347523770 347523674 6.540000e-34 156.0
10 TraesCS4B01G199500 chr4A 93.705 1652 87 11 2341 3978 117890716 117892364 0.000000e+00 2459.0
11 TraesCS4B01G199500 chr4A 92.044 817 54 8 1535 2341 117889868 117890683 0.000000e+00 1138.0
12 TraesCS4B01G199500 chr4A 90.987 466 18 8 871 1335 117889377 117889819 1.500000e-169 606.0
13 TraesCS4B01G199500 chr6B 80.287 837 131 16 1 813 404462847 404463673 6.990000e-168 601.0
14 TraesCS4B01G199500 chr6B 81.141 631 107 9 2 621 554686936 554686307 3.390000e-136 496.0
15 TraesCS4B01G199500 chr6B 79.670 182 33 4 4092 4272 483528351 483528529 1.430000e-25 128.0
16 TraesCS4B01G199500 chr6B 88.298 94 11 0 4274 4367 483528460 483528553 3.990000e-21 113.0
17 TraesCS4B01G199500 chr5D 81.060 755 117 14 5 737 233012099 233012849 3.280000e-161 579.0
18 TraesCS4B01G199500 chr5D 84.000 175 25 3 4098 4272 352845829 352845658 1.090000e-36 165.0
19 TraesCS4B01G199500 chr5D 82.581 155 20 5 4273 4426 451796281 451796133 3.970000e-26 130.0
20 TraesCS4B01G199500 chr5D 80.114 176 28 5 4098 4272 487509244 487509075 1.850000e-24 124.0
21 TraesCS4B01G199500 chr5D 92.500 80 5 1 4288 4367 487509130 487509052 3.990000e-21 113.0
22 TraesCS4B01G199500 chr6A 82.567 631 95 11 1 621 509567368 509566743 4.300000e-150 542.0
23 TraesCS4B01G199500 chr3D 79.571 793 117 20 32 815 159436933 159437689 4.330000e-145 525.0
24 TraesCS4B01G199500 chr3D 89.844 128 11 2 610 737 398414348 398414223 3.910000e-36 163.0
25 TraesCS4B01G199500 chr7A 81.978 627 100 8 9 626 232754021 232754643 2.010000e-143 520.0
26 TraesCS4B01G199500 chr2D 86.032 494 54 11 4395 4883 512908275 512908758 2.610000e-142 516.0
27 TraesCS4B01G199500 chr2D 82.488 217 26 6 610 826 186866735 186866939 3.880000e-41 180.0
28 TraesCS4B01G199500 chr1A 81.659 627 107 4 1 620 131282166 131282791 9.370000e-142 514.0
29 TraesCS4B01G199500 chr2B 81.601 587 99 7 2 580 158638923 158638338 1.230000e-130 477.0
30 TraesCS4B01G199500 chr2B 78.506 656 108 19 1 626 706526246 706526898 2.740000e-107 399.0
31 TraesCS4B01G199500 chr2B 80.690 290 43 6 528 813 8621682 8621962 3.830000e-51 213.0
32 TraesCS4B01G199500 chr2B 89.764 127 11 2 610 736 159260142 159260018 1.410000e-35 161.0
33 TraesCS4B01G199500 chr2B 89.474 95 10 0 4273 4367 603401782 603401876 2.390000e-23 121.0
34 TraesCS4B01G199500 chr2B 79.429 175 29 7 4092 4264 380249646 380249815 3.090000e-22 117.0
35 TraesCS4B01G199500 chr2B 79.518 166 32 2 4108 4272 413035476 413035640 3.090000e-22 117.0
36 TraesCS4B01G199500 chr7D 84.286 490 73 4 4395 4883 506676987 506677473 4.420000e-130 475.0
37 TraesCS4B01G199500 chr7D 81.852 540 76 8 1 518 384987638 384987099 7.510000e-118 435.0
38 TraesCS4B01G199500 chr7D 81.837 490 85 4 4395 4883 515397042 515396556 4.550000e-110 409.0
39 TraesCS4B01G199500 chr7D 84.298 121 11 1 4279 4391 34750963 34750843 1.440000e-20 111.0
40 TraesCS4B01G199500 chr5A 80.687 611 106 9 3 602 491243718 491244327 9.570000e-127 464.0
41 TraesCS4B01G199500 chr5A 83.592 451 67 6 4437 4883 74762455 74762902 2.720000e-112 416.0
42 TraesCS4B01G199500 chr5A 80.364 494 77 11 119 600 219830219 219829734 1.670000e-94 357.0
43 TraesCS4B01G199500 chr5A 76.374 673 116 26 2 647 320566726 320566070 6.100000e-84 322.0
44 TraesCS4B01G199500 chr5A 79.592 196 32 7 1 190 386701291 386701098 3.070000e-27 134.0
45 TraesCS4B01G199500 chr5A 81.595 163 27 2 4110 4272 449011147 449010988 1.100000e-26 132.0
46 TraesCS4B01G199500 chr5A 84.685 111 16 1 4273 4383 449011058 449010949 5.170000e-20 110.0
47 TraesCS4B01G199500 chr1D 81.466 491 85 4 4395 4883 92095051 92094565 9.850000e-107 398.0
48 TraesCS4B01G199500 chr1D 89.474 95 10 0 4273 4367 20945131 20945037 2.390000e-23 121.0
49 TraesCS4B01G199500 chr3B 81.761 477 78 8 4395 4866 194276054 194275582 1.650000e-104 390.0
50 TraesCS4B01G199500 chr3B 87.368 95 12 0 4273 4367 193393043 193392949 5.170000e-20 110.0
51 TraesCS4B01G199500 chr7B 81.212 495 81 12 4395 4883 437208051 437207563 5.930000e-104 388.0
52 TraesCS4B01G199500 chr7B 79.558 181 33 3 4092 4272 185282919 185283095 5.130000e-25 126.0
53 TraesCS4B01G199500 chr7B 80.488 164 31 1 4109 4271 577672173 577672336 1.850000e-24 124.0
54 TraesCS4B01G199500 chr7B 85.246 61 8 1 755 815 627283231 627283290 1.470000e-05 62.1
55 TraesCS4B01G199500 chr6D 80.855 491 91 3 4395 4883 394213269 394212780 2.760000e-102 383.0
56 TraesCS4B01G199500 chr6D 80.247 162 31 1 4112 4272 394213536 394213375 2.390000e-23 121.0
57 TraesCS4B01G199500 chr6D 89.362 94 10 0 4274 4367 394213444 394213351 8.590000e-23 119.0
58 TraesCS4B01G199500 chr3A 77.795 662 102 20 1 633 58694967 58695612 2.780000e-97 366.0
59 TraesCS4B01G199500 chr3A 83.404 235 31 6 510 739 707081850 707082081 1.380000e-50 211.0
60 TraesCS4B01G199500 chr3A 90.000 90 9 0 4273 4362 492702460 492702549 3.090000e-22 117.0
61 TraesCS4B01G199500 chr5B 82.488 217 25 8 598 813 408351227 408351431 1.400000e-40 178.0
62 TraesCS4B01G199500 chr5B 83.974 156 24 1 4118 4272 633907894 633908049 1.100000e-31 148.0
63 TraesCS4B01G199500 chr1B 89.474 133 12 2 598 730 465269107 465269237 3.020000e-37 167.0
64 TraesCS4B01G199500 chr1B 82.418 182 26 5 4092 4272 322959003 322958827 2.350000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G199500 chr4B 428024086 428028968 4882 True 2927.666667 6185 100.000000 1 4883 3 chr4B.!!$R2 4882
1 TraesCS4B01G199500 chr4D 347521867 347525340 3473 True 853.800000 2475 93.493600 873 4103 5 chr4D.!!$R2 3230
2 TraesCS4B01G199500 chr4A 117889377 117892364 2987 False 1401.000000 2459 92.245333 871 3978 3 chr4A.!!$F1 3107
3 TraesCS4B01G199500 chr6B 404462847 404463673 826 False 601.000000 601 80.287000 1 813 1 chr6B.!!$F1 812
4 TraesCS4B01G199500 chr6B 554686307 554686936 629 True 496.000000 496 81.141000 2 621 1 chr6B.!!$R1 619
5 TraesCS4B01G199500 chr5D 233012099 233012849 750 False 579.000000 579 81.060000 5 737 1 chr5D.!!$F1 732
6 TraesCS4B01G199500 chr6A 509566743 509567368 625 True 542.000000 542 82.567000 1 621 1 chr6A.!!$R1 620
7 TraesCS4B01G199500 chr3D 159436933 159437689 756 False 525.000000 525 79.571000 32 815 1 chr3D.!!$F1 783
8 TraesCS4B01G199500 chr7A 232754021 232754643 622 False 520.000000 520 81.978000 9 626 1 chr7A.!!$F1 617
9 TraesCS4B01G199500 chr1A 131282166 131282791 625 False 514.000000 514 81.659000 1 620 1 chr1A.!!$F1 619
10 TraesCS4B01G199500 chr2B 158638338 158638923 585 True 477.000000 477 81.601000 2 580 1 chr2B.!!$R1 578
11 TraesCS4B01G199500 chr2B 706526246 706526898 652 False 399.000000 399 78.506000 1 626 1 chr2B.!!$F5 625
12 TraesCS4B01G199500 chr7D 384987099 384987638 539 True 435.000000 435 81.852000 1 518 1 chr7D.!!$R2 517
13 TraesCS4B01G199500 chr5A 491243718 491244327 609 False 464.000000 464 80.687000 3 602 1 chr5A.!!$F2 599
14 TraesCS4B01G199500 chr5A 320566070 320566726 656 True 322.000000 322 76.374000 2 647 1 chr5A.!!$R2 645
15 TraesCS4B01G199500 chr6D 394212780 394213536 756 True 207.666667 383 83.488000 4112 4883 3 chr6D.!!$R1 771
16 TraesCS4B01G199500 chr3A 58694967 58695612 645 False 366.000000 366 77.795000 1 633 1 chr3A.!!$F1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 882 0.179000 CGTTGGAGATGCCCTTAGCT 59.821 55.000 0.00 0.0 44.23 3.32 F
992 1057 0.322636 AAGCAGCAGCAGAGCAGAAT 60.323 50.000 3.17 0.0 45.49 2.40 F
1234 1300 1.335182 CTAGAGAAGAAGATGCGCCGA 59.665 52.381 4.18 0.0 0.00 5.54 F
3185 3662 0.321919 ATGCGGCAGTGTCAAGTCAT 60.322 50.000 9.25 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 1823 2.544685 CTAACATCCAGAAGCCACTCG 58.455 52.381 0.0 0.0 0.0 4.18 R
2931 3408 1.407936 ATATCGCACACCTCTCAGCT 58.592 50.000 0.0 0.0 0.0 4.24 R
3191 3668 0.688487 TTAGGTTTGGGTCCTGGTCG 59.312 55.000 0.0 0.0 36.6 4.79 R
4188 4700 0.033504 GAAGGACGACACAGGCTTGA 59.966 55.000 1.4 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 46 2.821366 CGGACCATGTGGAGCAGC 60.821 66.667 5.96 0.00 38.94 5.25
105 112 2.747686 CCCGGTGGCAGTAACACT 59.252 61.111 0.00 0.00 38.83 3.55
145 155 2.174319 CCGCCTAAAAGGAGAGCGC 61.174 63.158 0.00 0.00 45.17 5.92
180 199 2.935481 GGTGTTCGATAAGACCGACT 57.065 50.000 0.00 0.00 39.07 4.18
321 343 3.081409 GGAAGGCCACCGCTCCTA 61.081 66.667 5.01 0.00 34.44 2.94
359 387 2.586792 GGCTCACCATCTTCGGCT 59.413 61.111 0.00 0.00 35.26 5.52
366 394 3.031013 TCACCATCTTCGGCTGATTAGA 58.969 45.455 0.00 0.00 0.00 2.10
395 423 0.605319 GTGATGTGGAGGCGGACAAA 60.605 55.000 0.00 0.00 0.00 2.83
396 424 0.321564 TGATGTGGAGGCGGACAAAG 60.322 55.000 0.00 0.00 0.00 2.77
520 579 2.014128 CGCCGGTGACCATTTAGATTT 58.986 47.619 10.20 0.00 0.00 2.17
562 626 2.100631 CGGACTAGCACCGCTTTGG 61.101 63.158 14.35 0.00 43.74 3.28
580 644 9.145865 CCGCTTTGGTGTAAATGTAATAAAATT 57.854 29.630 0.00 0.00 0.00 1.82
676 741 4.744631 GCACGAATTTCATCCAGTTTGTTT 59.255 37.500 0.00 0.00 0.00 2.83
680 745 6.475402 ACGAATTTCATCCAGTTTGTTTGAAC 59.525 34.615 0.00 0.00 0.00 3.18
705 770 5.126067 AGAGTTTGAAATGTATGCGGCTAT 58.874 37.500 0.00 0.00 0.00 2.97
737 802 2.745308 CCTCCCGCATCCATGTCCA 61.745 63.158 0.00 0.00 0.00 4.02
738 803 1.524621 CTCCCGCATCCATGTCCAC 60.525 63.158 0.00 0.00 0.00 4.02
739 804 2.256072 CTCCCGCATCCATGTCCACA 62.256 60.000 0.00 0.00 0.00 4.17
744 809 1.661341 GCATCCATGTCCACAGACTC 58.339 55.000 0.00 0.00 43.91 3.36
745 810 1.745141 GCATCCATGTCCACAGACTCC 60.745 57.143 0.00 0.00 43.91 3.85
763 828 2.863988 CCCCTCCCCACCCTTGTT 60.864 66.667 0.00 0.00 0.00 2.83
766 831 2.359975 CTCCCCACCCTTGTTCGC 60.360 66.667 0.00 0.00 0.00 4.70
767 832 2.852075 TCCCCACCCTTGTTCGCT 60.852 61.111 0.00 0.00 0.00 4.93
768 833 2.672996 CCCCACCCTTGTTCGCTG 60.673 66.667 0.00 0.00 0.00 5.18
769 834 2.429930 CCCACCCTTGTTCGCTGA 59.570 61.111 0.00 0.00 0.00 4.26
770 835 1.966451 CCCACCCTTGTTCGCTGAC 60.966 63.158 0.00 0.00 0.00 3.51
771 836 2.317609 CCACCCTTGTTCGCTGACG 61.318 63.158 0.00 0.00 42.01 4.35
789 854 5.747197 GCTGACGAATACGAGAGGAAATTTA 59.253 40.000 0.00 0.00 42.66 1.40
793 858 4.443394 CGAATACGAGAGGAAATTTACGGG 59.557 45.833 0.00 0.00 42.66 5.28
796 861 4.806640 ACGAGAGGAAATTTACGGGTTA 57.193 40.909 0.00 0.00 0.00 2.85
815 880 0.541863 ACCGTTGGAGATGCCCTTAG 59.458 55.000 0.00 0.00 34.97 2.18
816 881 0.815615 CCGTTGGAGATGCCCTTAGC 60.816 60.000 0.00 0.00 44.14 3.09
817 882 0.179000 CGTTGGAGATGCCCTTAGCT 59.821 55.000 0.00 0.00 44.23 3.32
818 883 1.412710 CGTTGGAGATGCCCTTAGCTA 59.587 52.381 0.00 0.00 44.23 3.32
819 884 2.546795 CGTTGGAGATGCCCTTAGCTAG 60.547 54.545 0.00 0.00 44.23 3.42
820 885 2.700897 GTTGGAGATGCCCTTAGCTAGA 59.299 50.000 0.00 0.00 44.23 2.43
821 886 2.603021 TGGAGATGCCCTTAGCTAGAG 58.397 52.381 0.00 0.00 44.23 2.43
822 887 1.275010 GGAGATGCCCTTAGCTAGAGC 59.725 57.143 0.00 0.00 44.23 4.09
823 888 5.618713 TGGAGATGCCCTTAGCTAGAGCT 62.619 52.174 9.38 9.38 45.36 4.09
841 906 8.491950 GCTAGAGCTTGTAAATATTCAGTTAGC 58.508 37.037 0.00 0.00 38.21 3.09
842 907 7.793927 AGAGCTTGTAAATATTCAGTTAGCC 57.206 36.000 0.00 0.00 0.00 3.93
843 908 6.768381 AGAGCTTGTAAATATTCAGTTAGCCC 59.232 38.462 0.00 0.00 0.00 5.19
844 909 6.423182 AGCTTGTAAATATTCAGTTAGCCCA 58.577 36.000 0.00 0.00 0.00 5.36
845 910 7.062957 AGCTTGTAAATATTCAGTTAGCCCAT 58.937 34.615 0.00 0.00 0.00 4.00
846 911 7.561356 AGCTTGTAAATATTCAGTTAGCCCATT 59.439 33.333 0.00 0.00 0.00 3.16
847 912 8.197439 GCTTGTAAATATTCAGTTAGCCCATTT 58.803 33.333 0.00 0.00 0.00 2.32
848 913 9.736023 CTTGTAAATATTCAGTTAGCCCATTTC 57.264 33.333 0.00 0.00 0.00 2.17
849 914 9.474313 TTGTAAATATTCAGTTAGCCCATTTCT 57.526 29.630 0.00 0.00 0.00 2.52
855 920 9.732130 ATATTCAGTTAGCCCATTTCTATTCTC 57.268 33.333 0.00 0.00 0.00 2.87
856 921 6.814954 TCAGTTAGCCCATTTCTATTCTCT 57.185 37.500 0.00 0.00 0.00 3.10
857 922 7.200434 TCAGTTAGCCCATTTCTATTCTCTT 57.800 36.000 0.00 0.00 0.00 2.85
858 923 7.275920 TCAGTTAGCCCATTTCTATTCTCTTC 58.724 38.462 0.00 0.00 0.00 2.87
859 924 6.484977 CAGTTAGCCCATTTCTATTCTCTTCC 59.515 42.308 0.00 0.00 0.00 3.46
860 925 6.158695 AGTTAGCCCATTTCTATTCTCTTCCA 59.841 38.462 0.00 0.00 0.00 3.53
861 926 5.046288 AGCCCATTTCTATTCTCTTCCAG 57.954 43.478 0.00 0.00 0.00 3.86
862 927 4.723789 AGCCCATTTCTATTCTCTTCCAGA 59.276 41.667 0.00 0.00 0.00 3.86
863 928 5.372066 AGCCCATTTCTATTCTCTTCCAGAT 59.628 40.000 0.00 0.00 0.00 2.90
864 929 6.067350 GCCCATTTCTATTCTCTTCCAGATT 58.933 40.000 0.00 0.00 0.00 2.40
865 930 6.016443 GCCCATTTCTATTCTCTTCCAGATTG 60.016 42.308 0.00 0.00 0.00 2.67
866 931 6.016443 CCCATTTCTATTCTCTTCCAGATTGC 60.016 42.308 0.00 0.00 0.00 3.56
867 932 6.544931 CCATTTCTATTCTCTTCCAGATTGCA 59.455 38.462 0.00 0.00 0.00 4.08
868 933 7.230913 CCATTTCTATTCTCTTCCAGATTGCAT 59.769 37.037 0.00 0.00 0.00 3.96
869 934 7.798596 TTTCTATTCTCTTCCAGATTGCATC 57.201 36.000 0.00 0.00 0.00 3.91
891 956 0.765510 AGGCCCTTTGTCTTCGAACT 59.234 50.000 0.00 0.00 0.00 3.01
916 981 1.841302 AAGTGGCCCATCTGCGAAGA 61.841 55.000 0.00 0.00 0.00 2.87
917 982 2.109126 GTGGCCCATCTGCGAAGAC 61.109 63.158 0.00 0.00 0.00 3.01
918 983 2.268920 GGCCCATCTGCGAAGACA 59.731 61.111 0.00 0.00 0.00 3.41
920 985 0.960364 GGCCCATCTGCGAAGACAAA 60.960 55.000 0.00 0.00 0.00 2.83
921 986 0.449388 GCCCATCTGCGAAGACAAAG 59.551 55.000 0.00 0.00 0.00 2.77
925 990 0.678048 ATCTGCGAAGACAAAGGGCC 60.678 55.000 0.00 0.00 0.00 5.80
926 991 1.302832 CTGCGAAGACAAAGGGCCT 60.303 57.895 0.00 0.00 0.00 5.19
927 992 0.890996 CTGCGAAGACAAAGGGCCTT 60.891 55.000 14.48 14.48 0.00 4.35
928 993 0.398696 TGCGAAGACAAAGGGCCTTA 59.601 50.000 21.25 0.00 0.00 2.69
929 994 1.087501 GCGAAGACAAAGGGCCTTAG 58.912 55.000 21.25 6.43 0.00 2.18
930 995 1.087501 CGAAGACAAAGGGCCTTAGC 58.912 55.000 21.25 11.81 38.76 3.09
986 1051 1.068472 CAGGAAAAAGCAGCAGCAGAG 60.068 52.381 3.17 0.00 45.49 3.35
992 1057 0.322636 AAGCAGCAGCAGAGCAGAAT 60.323 50.000 3.17 0.00 45.49 2.40
1049 1115 3.119709 CTGCCCGACGAGCTCTCTC 62.120 68.421 12.85 5.21 35.99 3.20
1175 1241 2.700773 GCAGCCCAAAACCCTAGCG 61.701 63.158 0.00 0.00 0.00 4.26
1234 1300 1.335182 CTAGAGAAGAAGATGCGCCGA 59.665 52.381 4.18 0.00 0.00 5.54
1586 1652 6.029346 TGGAGTACTTTTCTAGTTTACGGG 57.971 41.667 0.00 0.00 38.33 5.28
1593 1659 7.812690 ACTTTTCTAGTTTACGGGATTTTGT 57.187 32.000 0.00 0.00 31.29 2.83
1596 1662 7.571080 TTTCTAGTTTACGGGATTTTGTTGT 57.429 32.000 0.00 0.00 0.00 3.32
1598 1664 7.894376 TCTAGTTTACGGGATTTTGTTGTAG 57.106 36.000 0.00 0.00 0.00 2.74
1605 1671 4.007659 CGGGATTTTGTTGTAGTAGCCTT 58.992 43.478 0.00 0.00 0.00 4.35
1611 1677 8.520351 GGATTTTGTTGTAGTAGCCTTTTATGT 58.480 33.333 0.00 0.00 0.00 2.29
1626 1692 5.874261 CCTTTTATGTTTATTGTTGGCCAGG 59.126 40.000 5.11 0.00 0.00 4.45
1648 1714 3.259625 GGGCTTATCTCCAGTGATAGGAC 59.740 52.174 0.00 0.91 34.47 3.85
1662 1731 7.197017 CAGTGATAGGACGGATATAATAGTGC 58.803 42.308 0.00 0.00 0.00 4.40
1720 1789 6.543831 ACAGTAAGCATGGATTTGAAGGTATC 59.456 38.462 0.00 0.00 0.00 2.24
1754 1823 6.441093 TGAGAAATTAAGCATCACACCATC 57.559 37.500 0.00 0.00 0.00 3.51
1776 1846 1.561542 AGTGGCTTCTGGATGTTAGGG 59.438 52.381 0.00 0.00 0.00 3.53
1828 1901 6.836242 TGCATAATGGATGTATCTAACCACA 58.164 36.000 0.00 0.00 37.90 4.17
1853 1926 5.262588 AGCTTTGTTGTAAAGGTTTCCTG 57.737 39.130 0.00 0.00 34.69 3.86
1862 1935 6.478512 TGTAAAGGTTTCCTGAAGCAAAAT 57.521 33.333 0.00 0.00 38.21 1.82
1863 1936 6.512297 TGTAAAGGTTTCCTGAAGCAAAATC 58.488 36.000 0.00 0.00 38.21 2.17
2018 2096 2.289072 CCAGGCCCTATCGTGAACTATG 60.289 54.545 0.00 0.00 0.00 2.23
2126 2364 7.907214 TTTTGGCTCTATAGTCTTGACTTTC 57.093 36.000 8.66 0.00 0.00 2.62
2380 2855 6.795144 TGGTAAGAATTAAGACCCGTATGA 57.205 37.500 0.00 0.00 28.70 2.15
2476 2953 3.190327 TCCAATGTTATGCTTGTGTTCCG 59.810 43.478 0.00 0.00 0.00 4.30
2490 2967 7.011389 TGCTTGTGTTCCGAATATCTATGAAAG 59.989 37.037 0.00 0.00 0.00 2.62
2525 3002 7.734924 TCTTATGCATACATCTGAAATGACC 57.265 36.000 5.74 0.00 37.74 4.02
2532 3009 2.283298 CATCTGAAATGACCGGACCAG 58.717 52.381 9.46 4.89 0.00 4.00
2687 3164 1.871080 ACAGTGGAAACTCAGCTTCG 58.129 50.000 0.00 0.00 0.00 3.79
2750 3227 8.299570 TCTTAATTTGATGAAAACTGAAGGAGC 58.700 33.333 0.00 0.00 0.00 4.70
2791 3268 7.487822 AATTCTCTGTCTTCTCCATCACTTA 57.512 36.000 0.00 0.00 0.00 2.24
2811 3288 5.714806 ACTTATGTGGTTCCTATTTGGTTGG 59.285 40.000 0.00 0.00 37.07 3.77
2814 3291 2.823747 GTGGTTCCTATTTGGTTGGTCC 59.176 50.000 0.00 0.00 37.07 4.46
2821 3298 4.019141 TCCTATTTGGTTGGTCCGTTGTAT 60.019 41.667 0.00 0.00 39.52 2.29
2931 3408 2.564947 GGAGCAGAAGAAGAAGTCCAGA 59.435 50.000 0.00 0.00 0.00 3.86
2945 3422 1.079266 CCAGAGCTGAGAGGTGTGC 60.079 63.158 0.00 0.00 35.90 4.57
2990 3467 7.228507 TGTGATGCACTTGTATGTTCTTTACTT 59.771 33.333 0.00 0.00 35.11 2.24
3071 3548 1.133482 TCCTCTGATGATACCGAGGCA 60.133 52.381 0.00 0.00 42.15 4.75
3140 3617 1.811679 GGCGGAAGAAGAGAAGCGG 60.812 63.158 0.00 0.00 0.00 5.52
3180 3657 0.804364 GATGAATGCGGCAGTGTCAA 59.196 50.000 8.01 0.00 0.00 3.18
3182 3659 0.534877 TGAATGCGGCAGTGTCAAGT 60.535 50.000 8.01 0.00 0.00 3.16
3184 3661 0.534877 AATGCGGCAGTGTCAAGTCA 60.535 50.000 9.25 0.00 0.00 3.41
3185 3662 0.321919 ATGCGGCAGTGTCAAGTCAT 60.322 50.000 9.25 0.00 0.00 3.06
3191 3668 3.364366 CGGCAGTGTCAAGTCATTCTTTC 60.364 47.826 0.00 0.00 33.63 2.62
3198 3675 3.433615 GTCAAGTCATTCTTTCGACCAGG 59.566 47.826 0.00 0.00 33.63 4.45
3263 3740 3.433306 AACTACTATGCCAGGTTTGCA 57.567 42.857 0.00 0.00 43.97 4.08
3269 3746 3.741476 GCCAGGTTTGCAGGAGCG 61.741 66.667 0.00 0.00 46.23 5.03
3322 3802 0.617820 ACCTCCAAGCCGGTATGTCT 60.618 55.000 1.90 0.00 35.57 3.41
3396 3878 3.771577 AATTCGTTGTCTTCCTCCTGT 57.228 42.857 0.00 0.00 0.00 4.00
3407 3891 2.217510 TCCTCCTGTCCTCTGTACAC 57.782 55.000 0.00 0.00 0.00 2.90
3422 3906 2.426381 TGTACACGTGTAACACAGGACA 59.574 45.455 28.89 19.56 37.42 4.02
3430 3914 1.271656 GTAACACAGGACACGGCTACT 59.728 52.381 0.00 0.00 0.00 2.57
3467 3951 0.779997 ATGGAAAACAGTCCCTGCCT 59.220 50.000 0.00 0.00 36.80 4.75
3547 4032 2.546789 GTGGTATTGGCCGCTGTTATAC 59.453 50.000 0.00 0.00 36.19 1.47
3589 4074 9.177608 TGAAAATAATCAATTCCATCTTCTCGT 57.822 29.630 0.00 0.00 0.00 4.18
3604 4089 1.808945 TCTCGTAGGGTCGTCTCAAAC 59.191 52.381 0.00 0.00 0.00 2.93
3606 4091 2.163815 CTCGTAGGGTCGTCTCAAACAT 59.836 50.000 0.00 0.00 0.00 2.71
3672 4157 2.389386 GCCAATGGCGTCGATGTTA 58.611 52.632 9.14 0.00 39.62 2.41
3735 4220 0.685097 TTCCTTGCTGTACTCCGCTT 59.315 50.000 0.00 0.00 0.00 4.68
3763 4248 0.941542 TTGAGTGCTGTTTACCGTGC 59.058 50.000 0.00 0.00 0.00 5.34
3773 4258 0.249531 TTTACCGTGCAGCACTCGAA 60.250 50.000 23.15 10.82 37.45 3.71
3817 4302 1.457346 AGCATAGTCTGTTTGCTGCC 58.543 50.000 0.00 0.00 44.63 4.85
3867 4352 3.473625 ACTTCGTTTCCCTTTGTAGTGG 58.526 45.455 0.00 0.00 0.00 4.00
3900 4389 1.993370 GCCATGTACTCGTGTCTGTTC 59.007 52.381 0.00 0.00 0.00 3.18
3911 4400 3.749088 TCGTGTCTGTTCAGTTTTTGTGT 59.251 39.130 0.00 0.00 0.00 3.72
3943 4432 6.928492 TGTTCGTTTCAGATGCATGCTATATA 59.072 34.615 20.33 0.00 0.00 0.86
3982 4471 1.123077 TCTGGTAAGCGCATCTCCAT 58.877 50.000 11.47 0.00 0.00 3.41
3984 4473 0.249447 TGGTAAGCGCATCTCCATCG 60.249 55.000 11.47 0.00 0.00 3.84
3993 4482 0.179009 CATCTCCATCGGCAACCCAT 60.179 55.000 0.00 0.00 0.00 4.00
4005 4494 4.081917 TCGGCAACCCATAAAAATCTTTCC 60.082 41.667 0.00 0.00 0.00 3.13
4008 4497 3.775661 ACCCATAAAAATCTTTCCGCG 57.224 42.857 0.00 0.00 0.00 6.46
4011 4500 3.377172 CCCATAAAAATCTTTCCGCGTCT 59.623 43.478 4.92 0.00 0.00 4.18
4012 4501 4.495844 CCCATAAAAATCTTTCCGCGTCTC 60.496 45.833 4.92 0.00 0.00 3.36
4013 4502 4.495844 CCATAAAAATCTTTCCGCGTCTCC 60.496 45.833 4.92 0.00 0.00 3.71
4014 4503 1.076332 AAAATCTTTCCGCGTCTCCG 58.924 50.000 4.92 0.00 37.07 4.63
4025 4514 2.815308 GTCTCCGCCGACATGGAT 59.185 61.111 0.00 0.00 42.00 3.41
4027 4516 2.058001 TCTCCGCCGACATGGATGT 61.058 57.895 0.00 0.00 45.16 3.06
4103 4614 3.500982 CGGATGAAATTCGTGCAAACAT 58.499 40.909 7.45 0.00 41.48 2.71
4104 4615 3.919804 CGGATGAAATTCGTGCAAACATT 59.080 39.130 7.45 0.00 41.48 2.71
4105 4616 5.092105 CGGATGAAATTCGTGCAAACATTA 58.908 37.500 7.45 0.00 41.48 1.90
4106 4617 5.003402 CGGATGAAATTCGTGCAAACATTAC 59.997 40.000 7.45 0.00 41.48 1.89
4107 4618 5.288472 GGATGAAATTCGTGCAAACATTACC 59.712 40.000 1.72 0.00 0.00 2.85
4108 4619 4.222886 TGAAATTCGTGCAAACATTACCG 58.777 39.130 0.00 0.00 0.00 4.02
4109 4620 2.911819 ATTCGTGCAAACATTACCGG 57.088 45.000 0.00 0.00 0.00 5.28
4110 4621 1.880271 TTCGTGCAAACATTACCGGA 58.120 45.000 9.46 0.00 0.00 5.14
4124 4635 9.581099 AAACATTACCGGATTTCATTACATTTC 57.419 29.630 9.46 0.00 0.00 2.17
4125 4636 8.287439 ACATTACCGGATTTCATTACATTTCA 57.713 30.769 9.46 0.00 0.00 2.69
4147 4659 8.940768 TTCAAACATTTAGAACCAGAAAAAGG 57.059 30.769 0.00 0.00 0.00 3.11
4150 4662 5.147767 ACATTTAGAACCAGAAAAAGGCCT 58.852 37.500 0.00 0.00 0.00 5.19
4152 4664 1.332195 AGAACCAGAAAAAGGCCTGC 58.668 50.000 5.69 0.00 0.00 4.85
4155 4667 2.285773 CCAGAAAAAGGCCTGCCCC 61.286 63.158 5.69 0.00 36.58 5.80
4157 4669 1.228988 AGAAAAAGGCCTGCCCCTG 60.229 57.895 5.69 0.00 34.80 4.45
4158 4670 1.533994 GAAAAAGGCCTGCCCCTGT 60.534 57.895 5.69 0.00 34.80 4.00
4161 4673 1.725169 AAAAGGCCTGCCCCTGTACA 61.725 55.000 5.69 0.00 34.80 2.90
4163 4675 0.623324 AAGGCCTGCCCCTGTACATA 60.623 55.000 5.69 0.00 34.80 2.29
4169 4681 3.454858 CCTGCCCCTGTACATATCCTAT 58.545 50.000 0.00 0.00 0.00 2.57
4170 4682 3.198635 CCTGCCCCTGTACATATCCTATG 59.801 52.174 0.00 0.00 0.00 2.23
4174 4686 4.341487 CCCCTGTACATATCCTATGACGA 58.659 47.826 0.00 0.00 0.00 4.20
4175 4687 4.158025 CCCCTGTACATATCCTATGACGAC 59.842 50.000 0.00 0.00 0.00 4.34
4176 4688 4.765339 CCCTGTACATATCCTATGACGACA 59.235 45.833 0.00 0.00 0.00 4.35
4179 4691 5.070685 TGTACATATCCTATGACGACAGCT 58.929 41.667 0.00 0.00 0.00 4.24
4182 4694 2.373335 ATCCTATGACGACAGCTCCT 57.627 50.000 0.00 0.00 0.00 3.69
4183 4695 2.145397 TCCTATGACGACAGCTCCTT 57.855 50.000 0.00 0.00 0.00 3.36
4195 4707 1.968540 GCTCCTTGCGTTCAAGCCT 60.969 57.895 0.00 0.00 46.38 4.58
4201 4713 1.771073 TTGCGTTCAAGCCTGTGTCG 61.771 55.000 0.00 0.00 36.02 4.35
4206 4718 0.468226 TTCAAGCCTGTGTCGTCCTT 59.532 50.000 0.00 0.00 0.00 3.36
4214 4726 1.215647 GTGTCGTCCTTCATCCGCT 59.784 57.895 0.00 0.00 0.00 5.52
4223 4735 3.031013 TCCTTCATCCGCTGTCTTCATA 58.969 45.455 0.00 0.00 0.00 2.15
4225 4737 3.806521 CCTTCATCCGCTGTCTTCATAAG 59.193 47.826 0.00 0.00 0.00 1.73
4228 4740 2.988010 TCCGCTGTCTTCATAAGCAT 57.012 45.000 0.00 0.00 36.73 3.79
4258 4770 0.321653 ACCGATGAAGTGAAGGTGCC 60.322 55.000 0.00 0.00 33.37 5.01
4259 4771 1.361668 CCGATGAAGTGAAGGTGCCG 61.362 60.000 0.00 0.00 0.00 5.69
4260 4772 0.670546 CGATGAAGTGAAGGTGCCGT 60.671 55.000 0.00 0.00 0.00 5.68
4261 4773 1.079503 GATGAAGTGAAGGTGCCGTC 58.920 55.000 0.00 0.00 0.00 4.79
4262 4774 0.687354 ATGAAGTGAAGGTGCCGTCT 59.313 50.000 5.81 0.00 0.00 4.18
4263 4775 0.033504 TGAAGTGAAGGTGCCGTCTC 59.966 55.000 5.81 2.49 0.00 3.36
4264 4776 0.670854 GAAGTGAAGGTGCCGTCTCC 60.671 60.000 5.81 0.00 0.00 3.71
4265 4777 2.432628 GTGAAGGTGCCGTCTCCG 60.433 66.667 5.81 0.00 0.00 4.63
4275 4787 4.452733 CGTCTCCGGCAAGGGTCC 62.453 72.222 0.00 0.00 41.52 4.46
4276 4788 3.003763 GTCTCCGGCAAGGGTCCT 61.004 66.667 0.00 0.00 41.52 3.85
4277 4789 2.203938 TCTCCGGCAAGGGTCCTT 60.204 61.111 0.00 0.00 41.52 3.36
4278 4790 2.269241 CTCCGGCAAGGGTCCTTC 59.731 66.667 0.00 0.00 41.52 3.46
4279 4791 2.528127 TCCGGCAAGGGTCCTTCA 60.528 61.111 0.00 0.00 41.52 3.02
4280 4792 1.915078 CTCCGGCAAGGGTCCTTCAT 61.915 60.000 0.00 0.00 41.52 2.57
4281 4793 1.452108 CCGGCAAGGGTCCTTCATC 60.452 63.158 0.00 0.00 33.42 2.92
4282 4794 1.452108 CGGCAAGGGTCCTTCATCC 60.452 63.158 0.00 1.49 33.42 3.51
4283 4795 1.452108 GGCAAGGGTCCTTCATCCG 60.452 63.158 0.00 0.00 33.42 4.18
4284 4796 2.115291 GCAAGGGTCCTTCATCCGC 61.115 63.158 0.00 0.00 33.42 5.54
4285 4797 1.604378 CAAGGGTCCTTCATCCGCT 59.396 57.895 0.00 0.00 33.42 5.52
4286 4798 0.745845 CAAGGGTCCTTCATCCGCTG 60.746 60.000 0.00 0.00 33.42 5.18
4287 4799 1.201429 AAGGGTCCTTCATCCGCTGT 61.201 55.000 0.00 0.00 0.00 4.40
4288 4800 1.153349 GGGTCCTTCATCCGCTGTC 60.153 63.158 0.00 0.00 0.00 3.51
4289 4801 1.617947 GGGTCCTTCATCCGCTGTCT 61.618 60.000 0.00 0.00 0.00 3.41
4290 4802 0.250513 GGTCCTTCATCCGCTGTCTT 59.749 55.000 0.00 0.00 0.00 3.01
4291 4803 1.646189 GTCCTTCATCCGCTGTCTTC 58.354 55.000 0.00 0.00 0.00 2.87
4292 4804 1.066858 GTCCTTCATCCGCTGTCTTCA 60.067 52.381 0.00 0.00 0.00 3.02
4293 4805 1.833630 TCCTTCATCCGCTGTCTTCAT 59.166 47.619 0.00 0.00 0.00 2.57
4294 4806 3.031013 TCCTTCATCCGCTGTCTTCATA 58.969 45.455 0.00 0.00 0.00 2.15
4295 4807 3.450817 TCCTTCATCCGCTGTCTTCATAA 59.549 43.478 0.00 0.00 0.00 1.90
4296 4808 3.806521 CCTTCATCCGCTGTCTTCATAAG 59.193 47.826 0.00 0.00 0.00 1.73
4297 4809 2.826428 TCATCCGCTGTCTTCATAAGC 58.174 47.619 0.00 0.00 0.00 3.09
4298 4810 2.168313 TCATCCGCTGTCTTCATAAGCA 59.832 45.455 0.00 0.00 36.73 3.91
4299 4811 2.988010 TCCGCTGTCTTCATAAGCAT 57.012 45.000 0.00 0.00 36.73 3.79
4300 4812 2.826428 TCCGCTGTCTTCATAAGCATC 58.174 47.619 0.00 0.00 36.73 3.91
4301 4813 1.524355 CCGCTGTCTTCATAAGCATCG 59.476 52.381 0.00 0.00 36.73 3.84
4302 4814 1.524355 CGCTGTCTTCATAAGCATCGG 59.476 52.381 0.00 0.00 36.73 4.18
4303 4815 1.262683 GCTGTCTTCATAAGCATCGGC 59.737 52.381 0.00 0.00 36.91 5.54
4320 4832 2.510768 GGCGATAAGACCGATGAAGT 57.489 50.000 0.00 0.00 0.00 3.01
4321 4833 2.128035 GGCGATAAGACCGATGAAGTG 58.872 52.381 0.00 0.00 0.00 3.16
4322 4834 2.223735 GGCGATAAGACCGATGAAGTGA 60.224 50.000 0.00 0.00 0.00 3.41
4323 4835 3.444916 GCGATAAGACCGATGAAGTGAA 58.555 45.455 0.00 0.00 0.00 3.18
4324 4836 3.487574 GCGATAAGACCGATGAAGTGAAG 59.512 47.826 0.00 0.00 0.00 3.02
4325 4837 4.045104 CGATAAGACCGATGAAGTGAAGG 58.955 47.826 0.00 0.00 0.00 3.46
4326 4838 4.440250 CGATAAGACCGATGAAGTGAAGGT 60.440 45.833 0.00 0.00 38.00 3.50
4327 4839 2.751166 AGACCGATGAAGTGAAGGTG 57.249 50.000 0.00 0.00 35.00 4.00
4328 4840 1.079503 GACCGATGAAGTGAAGGTGC 58.920 55.000 0.00 0.00 35.00 5.01
4329 4841 0.321653 ACCGATGAAGTGAAGGTGCC 60.322 55.000 0.00 0.00 33.37 5.01
4355 4867 2.093447 CCGGCAAGGAAGAGTAGAACAT 60.093 50.000 0.00 0.00 45.00 2.71
4356 4868 3.132289 CCGGCAAGGAAGAGTAGAACATA 59.868 47.826 0.00 0.00 45.00 2.29
4391 4911 3.633116 ACAAGGTACCGCCGCCTT 61.633 61.111 6.18 0.00 45.17 4.35
4393 4913 3.315949 AAGGTACCGCCGCCTTCA 61.316 61.111 6.18 0.00 40.81 3.02
4403 4969 1.811266 CCGCCTTCATGGACGTGAG 60.811 63.158 0.00 0.00 38.35 3.51
4425 4991 1.024271 CCACTATGGAAATGGTGGCG 58.976 55.000 8.11 0.00 44.30 5.69
4426 4992 0.381801 CACTATGGAAATGGTGGCGC 59.618 55.000 0.00 0.00 30.60 6.53
4446 5012 1.303317 GGTGCCGTTCTTGTCCCAT 60.303 57.895 0.00 0.00 0.00 4.00
4447 5013 1.305930 GGTGCCGTTCTTGTCCCATC 61.306 60.000 0.00 0.00 0.00 3.51
4450 5016 1.295423 CCGTTCTTGTCCCATCGGT 59.705 57.895 0.00 0.00 34.38 4.69
4453 5019 0.739813 GTTCTTGTCCCATCGGTCCG 60.740 60.000 4.39 4.39 0.00 4.79
4454 5020 1.895020 TTCTTGTCCCATCGGTCCGG 61.895 60.000 12.29 0.00 0.00 5.14
4455 5021 4.090588 TTGTCCCATCGGTCCGGC 62.091 66.667 12.29 0.00 0.00 6.13
4464 5030 1.910580 ATCGGTCCGGCTGATGGTTT 61.911 55.000 12.29 0.00 41.43 3.27
4471 5037 3.667087 GCTGATGGTTTGTCGGCA 58.333 55.556 2.29 0.00 45.22 5.69
4472 5038 1.503542 GCTGATGGTTTGTCGGCAG 59.496 57.895 0.00 0.00 45.22 4.85
4474 5040 2.244436 CTGATGGTTTGTCGGCAGCG 62.244 60.000 0.00 0.00 0.00 5.18
4475 5041 3.667429 GATGGTTTGTCGGCAGCGC 62.667 63.158 0.00 0.00 0.00 5.92
4505 5071 2.561976 CAACTCGCGTTGTTCTCTTC 57.438 50.000 10.09 0.00 44.27 2.87
4510 5076 2.019951 GCGTTGTTCTCTTCCGCGA 61.020 57.895 8.23 0.00 34.66 5.87
4513 5079 1.710013 GTTGTTCTCTTCCGCGATCA 58.290 50.000 8.23 0.00 0.00 2.92
4514 5080 2.271800 GTTGTTCTCTTCCGCGATCAT 58.728 47.619 8.23 0.00 0.00 2.45
4515 5081 2.672961 TGTTCTCTTCCGCGATCATT 57.327 45.000 8.23 0.00 0.00 2.57
4516 5082 2.972625 TGTTCTCTTCCGCGATCATTT 58.027 42.857 8.23 0.00 0.00 2.32
4517 5083 2.672874 TGTTCTCTTCCGCGATCATTTG 59.327 45.455 8.23 0.00 0.00 2.32
4529 5095 1.401552 GATCATTTGCAACTGCGCCTA 59.598 47.619 11.69 0.00 45.83 3.93
4531 5097 0.794229 CATTTGCAACTGCGCCTACG 60.794 55.000 4.18 0.00 45.83 3.51
4573 5139 4.717629 CGGCTTGAGTGCGGACGA 62.718 66.667 0.00 0.00 35.67 4.20
4589 5155 3.779303 CGACATCGTAAATGGCACG 57.221 52.632 0.00 0.00 40.72 5.34
4614 5180 2.190841 CGCCACGAAGTTGGGGTTT 61.191 57.895 0.00 0.00 41.61 3.27
4615 5181 1.362355 GCCACGAAGTTGGGGTTTG 59.638 57.895 0.00 0.00 41.61 2.93
4616 5182 1.388837 GCCACGAAGTTGGGGTTTGT 61.389 55.000 0.00 0.00 41.61 2.83
4617 5183 1.107945 CCACGAAGTTGGGGTTTGTT 58.892 50.000 0.00 0.00 41.61 2.83
4618 5184 1.202359 CCACGAAGTTGGGGTTTGTTG 60.202 52.381 0.00 0.00 41.61 3.33
4672 5239 3.231298 GCCGTAGATCTGGCCCTT 58.769 61.111 12.15 0.00 45.73 3.95
4687 5254 2.753966 CCTTCGCCAACCGATGCTG 61.754 63.158 0.00 0.00 46.81 4.41
4691 5258 2.437359 GCCAACCGATGCTGCTCT 60.437 61.111 0.00 0.00 0.00 4.09
4721 5288 3.562557 ACATGTTGTACCGTTGTTTCTCC 59.437 43.478 0.00 0.00 0.00 3.71
4724 5291 1.873698 TGTACCGTTGTTTCTCCTGC 58.126 50.000 0.00 0.00 0.00 4.85
4734 5301 1.257750 TTTCTCCTGCGCCTGCTAGA 61.258 55.000 4.18 0.00 43.34 2.43
4739 5306 1.079543 CTGCGCCTGCTAGAACACT 60.080 57.895 4.18 0.00 43.34 3.55
4741 5308 1.079819 GCGCCTGCTAGAACACTGA 60.080 57.895 0.00 0.00 38.39 3.41
4742 5309 0.460987 GCGCCTGCTAGAACACTGAT 60.461 55.000 0.00 0.00 38.39 2.90
4744 5311 2.736978 CGCCTGCTAGAACACTGATAG 58.263 52.381 0.00 0.00 0.00 2.08
4751 5318 1.479709 AGAACACTGATAGAGGCGCT 58.520 50.000 7.64 0.00 0.00 5.92
4752 5319 2.656002 AGAACACTGATAGAGGCGCTA 58.344 47.619 7.64 0.00 0.00 4.26
4753 5320 3.024547 AGAACACTGATAGAGGCGCTAA 58.975 45.455 7.64 0.00 31.66 3.09
4755 5322 2.100197 ACACTGATAGAGGCGCTAACA 58.900 47.619 7.64 7.88 31.89 2.41
4758 5325 2.695666 ACTGATAGAGGCGCTAACACAT 59.304 45.455 7.64 0.00 29.93 3.21
4760 5327 2.430694 TGATAGAGGCGCTAACACATGT 59.569 45.455 7.64 0.00 31.66 3.21
4761 5328 2.579207 TAGAGGCGCTAACACATGTC 57.421 50.000 7.64 0.00 0.00 3.06
4791 5358 1.969064 ATGGCGGCGTTAAAGTGCA 60.969 52.632 9.37 0.00 0.00 4.57
4792 5359 1.312371 ATGGCGGCGTTAAAGTGCAT 61.312 50.000 9.37 0.00 0.00 3.96
4794 5361 1.580132 GCGGCGTTAAAGTGCATCG 60.580 57.895 9.37 0.00 0.00 3.84
4819 5386 0.535335 TACTCCATGGTGAAGTCGGC 59.465 55.000 20.43 0.00 0.00 5.54
4831 5398 2.432456 GTCGGCGTGCACATGAGA 60.432 61.111 18.64 7.41 0.00 3.27
4832 5399 2.125952 TCGGCGTGCACATGAGAG 60.126 61.111 18.64 0.00 0.00 3.20
4853 5420 3.695606 GGAGCCAGTGCGGAGTCA 61.696 66.667 0.00 0.00 44.33 3.41
4877 5444 2.420568 GCCCGTCTCCATCGTGGTA 61.421 63.158 4.33 0.00 39.03 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 199 1.621992 GCGATGTCCTCCTCCTCATA 58.378 55.000 0.00 0.00 0.00 2.15
215 234 0.321564 CGGCTTCATGGTCACCTTGA 60.322 55.000 8.36 8.36 36.18 3.02
218 237 1.296715 GTCGGCTTCATGGTCACCT 59.703 57.895 0.00 0.00 0.00 4.00
268 290 2.545952 CGGTGACCTATCATGCACTACC 60.546 54.545 0.00 0.00 37.14 3.18
395 423 1.920835 GGAGGCCTGGGAAGTGACT 60.921 63.158 12.00 0.00 0.00 3.41
396 424 2.671682 GGAGGCCTGGGAAGTGAC 59.328 66.667 12.00 0.00 0.00 3.67
520 579 9.132923 CCGGCTCTAGAGATATAATTAATACCA 57.867 37.037 24.24 0.00 0.00 3.25
534 593 0.837940 TGCTAGTCCGGCTCTAGAGA 59.162 55.000 24.24 14.89 37.62 3.10
580 644 9.040939 CGTCTGGATTACATATAAACATGACAA 57.959 33.333 0.00 0.00 0.00 3.18
641 706 1.169661 ATTCGTGCAAACAAGGCCGA 61.170 50.000 0.00 0.00 34.05 5.54
676 741 6.142139 CGCATACATTTCAAACTCTTGTTCA 58.858 36.000 0.00 0.00 34.96 3.18
680 745 3.853671 GCCGCATACATTTCAAACTCTTG 59.146 43.478 0.00 0.00 0.00 3.02
717 782 1.757306 GACATGGATGCGGGAGGAT 59.243 57.895 0.00 0.00 46.51 3.24
750 815 2.852075 AGCGAACAAGGGTGGGGA 60.852 61.111 0.00 0.00 0.00 4.81
754 819 1.300620 TCGTCAGCGAACAAGGGTG 60.301 57.895 0.00 0.00 44.92 4.61
755 820 3.134879 TCGTCAGCGAACAAGGGT 58.865 55.556 0.00 0.00 44.92 4.34
763 828 0.656259 CCTCTCGTATTCGTCAGCGA 59.344 55.000 0.00 0.00 46.36 4.93
766 831 6.075519 CGTAAATTTCCTCTCGTATTCGTCAG 60.076 42.308 0.00 0.00 38.33 3.51
767 832 5.740569 CGTAAATTTCCTCTCGTATTCGTCA 59.259 40.000 0.00 0.00 38.33 4.35
768 833 5.172771 CCGTAAATTTCCTCTCGTATTCGTC 59.827 44.000 0.00 0.00 38.33 4.20
769 834 5.039333 CCGTAAATTTCCTCTCGTATTCGT 58.961 41.667 0.00 0.00 38.33 3.85
770 835 4.443394 CCCGTAAATTTCCTCTCGTATTCG 59.557 45.833 0.00 0.00 38.55 3.34
771 836 5.354767 ACCCGTAAATTTCCTCTCGTATTC 58.645 41.667 0.00 0.00 0.00 1.75
772 837 5.349061 ACCCGTAAATTTCCTCTCGTATT 57.651 39.130 0.00 0.00 0.00 1.89
775 840 3.690475 AACCCGTAAATTTCCTCTCGT 57.310 42.857 0.00 0.00 0.00 4.18
793 858 0.252197 AGGGCATCTCCAACGGTAAC 59.748 55.000 0.00 0.00 36.21 2.50
796 861 0.541863 CTAAGGGCATCTCCAACGGT 59.458 55.000 0.00 0.00 36.21 4.83
815 880 8.491950 GCTAACTGAATATTTACAAGCTCTAGC 58.508 37.037 0.00 0.00 42.49 3.42
816 881 8.983724 GGCTAACTGAATATTTACAAGCTCTAG 58.016 37.037 0.00 0.00 0.00 2.43
817 882 7.931948 GGGCTAACTGAATATTTACAAGCTCTA 59.068 37.037 0.00 0.00 0.00 2.43
818 883 6.768381 GGGCTAACTGAATATTTACAAGCTCT 59.232 38.462 0.00 0.00 0.00 4.09
819 884 6.542370 TGGGCTAACTGAATATTTACAAGCTC 59.458 38.462 0.00 0.00 0.00 4.09
820 885 6.423182 TGGGCTAACTGAATATTTACAAGCT 58.577 36.000 0.00 0.00 0.00 3.74
821 886 6.693315 TGGGCTAACTGAATATTTACAAGC 57.307 37.500 0.00 0.00 0.00 4.01
822 887 9.736023 GAAATGGGCTAACTGAATATTTACAAG 57.264 33.333 0.00 0.00 0.00 3.16
823 888 9.474313 AGAAATGGGCTAACTGAATATTTACAA 57.526 29.630 0.00 0.00 0.00 2.41
829 894 9.732130 GAGAATAGAAATGGGCTAACTGAATAT 57.268 33.333 0.00 0.00 0.00 1.28
830 895 8.938883 AGAGAATAGAAATGGGCTAACTGAATA 58.061 33.333 0.00 0.00 0.00 1.75
831 896 7.810260 AGAGAATAGAAATGGGCTAACTGAAT 58.190 34.615 0.00 0.00 0.00 2.57
832 897 7.200434 AGAGAATAGAAATGGGCTAACTGAA 57.800 36.000 0.00 0.00 0.00 3.02
833 898 6.814954 AGAGAATAGAAATGGGCTAACTGA 57.185 37.500 0.00 0.00 0.00 3.41
834 899 6.484977 GGAAGAGAATAGAAATGGGCTAACTG 59.515 42.308 0.00 0.00 0.00 3.16
835 900 6.158695 TGGAAGAGAATAGAAATGGGCTAACT 59.841 38.462 0.00 0.00 0.00 2.24
836 901 6.357367 TGGAAGAGAATAGAAATGGGCTAAC 58.643 40.000 0.00 0.00 0.00 2.34
837 902 6.386927 TCTGGAAGAGAATAGAAATGGGCTAA 59.613 38.462 0.00 0.00 38.67 3.09
838 903 5.905331 TCTGGAAGAGAATAGAAATGGGCTA 59.095 40.000 0.00 0.00 38.67 3.93
839 904 4.723789 TCTGGAAGAGAATAGAAATGGGCT 59.276 41.667 0.00 0.00 38.67 5.19
840 905 5.041191 TCTGGAAGAGAATAGAAATGGGC 57.959 43.478 0.00 0.00 38.67 5.36
855 920 1.688772 CCTGGGATGCAATCTGGAAG 58.311 55.000 0.00 0.00 44.71 3.46
856 921 0.396139 GCCTGGGATGCAATCTGGAA 60.396 55.000 12.16 0.00 44.71 3.53
857 922 1.228228 GCCTGGGATGCAATCTGGA 59.772 57.895 12.16 0.00 44.71 3.86
858 923 1.831286 GGCCTGGGATGCAATCTGG 60.831 63.158 0.00 0.00 44.71 3.86
859 924 1.831286 GGGCCTGGGATGCAATCTG 60.831 63.158 0.84 0.00 44.71 2.90
860 925 1.587522 AAGGGCCTGGGATGCAATCT 61.588 55.000 6.92 0.00 44.71 2.40
861 926 0.688749 AAAGGGCCTGGGATGCAATC 60.689 55.000 6.92 0.00 44.55 2.67
862 927 0.979187 CAAAGGGCCTGGGATGCAAT 60.979 55.000 6.92 0.00 0.00 3.56
863 928 1.610086 CAAAGGGCCTGGGATGCAA 60.610 57.895 6.92 0.00 0.00 4.08
864 929 2.037687 CAAAGGGCCTGGGATGCA 59.962 61.111 6.92 0.00 0.00 3.96
865 930 2.037847 ACAAAGGGCCTGGGATGC 59.962 61.111 6.92 0.00 0.00 3.91
866 931 0.040204 AAGACAAAGGGCCTGGGATG 59.960 55.000 6.92 7.10 0.00 3.51
867 932 0.332972 GAAGACAAAGGGCCTGGGAT 59.667 55.000 6.92 0.00 0.00 3.85
868 933 1.767692 GAAGACAAAGGGCCTGGGA 59.232 57.895 6.92 0.00 0.00 4.37
869 934 1.675641 CGAAGACAAAGGGCCTGGG 60.676 63.158 6.92 4.72 0.00 4.45
891 956 1.852157 AGATGGGCCACTTGGGTCA 60.852 57.895 9.28 0.00 45.89 4.02
925 990 0.460987 CCCTCTTCACGCAGGCTAAG 60.461 60.000 0.00 0.00 0.00 2.18
926 991 1.596934 CCCTCTTCACGCAGGCTAA 59.403 57.895 0.00 0.00 0.00 3.09
927 992 2.359169 CCCCTCTTCACGCAGGCTA 61.359 63.158 0.00 0.00 0.00 3.93
928 993 3.710722 CCCCTCTTCACGCAGGCT 61.711 66.667 0.00 0.00 0.00 4.58
929 994 4.785453 CCCCCTCTTCACGCAGGC 62.785 72.222 0.00 0.00 0.00 4.85
953 1018 1.816863 TTTCCTGCTCGAGTTCGCCT 61.817 55.000 15.13 0.00 39.60 5.52
986 1051 1.262683 GTGCGGCAAGAGATATTCTGC 59.737 52.381 3.23 0.00 35.91 4.26
992 1057 1.153647 CGGTGTGCGGCAAGAGATA 60.154 57.895 3.23 0.00 0.00 1.98
1044 1110 1.326328 CTGAGATGCCATCGGAGAGA 58.674 55.000 0.00 0.00 43.63 3.10
1049 1115 1.610102 GGAATCCTGAGATGCCATCGG 60.610 57.143 0.00 0.00 46.70 4.18
1234 1300 4.699522 GTCCCAAACCGCTCCGCT 62.700 66.667 0.00 0.00 0.00 5.52
1550 1616 4.473477 AGTACTCCATAACTTCCAGCAC 57.527 45.455 0.00 0.00 0.00 4.40
1553 1619 8.532819 ACTAGAAAAGTACTCCATAACTTCCAG 58.467 37.037 0.00 0.00 36.36 3.86
1586 1652 9.908152 AACATAAAAGGCTACTACAACAAAATC 57.092 29.630 0.00 0.00 0.00 2.17
1596 1662 8.463607 GCCAACAATAAACATAAAAGGCTACTA 58.536 33.333 0.00 0.00 35.63 1.82
1598 1664 6.533723 GGCCAACAATAAACATAAAAGGCTAC 59.466 38.462 0.00 0.00 38.43 3.58
1605 1671 4.223923 CCCCTGGCCAACAATAAACATAAA 59.776 41.667 7.01 0.00 0.00 1.40
1611 1677 2.677508 GCCCCTGGCCAACAATAAA 58.322 52.632 7.01 0.00 44.06 1.40
1626 1692 3.259625 GTCCTATCACTGGAGATAAGCCC 59.740 52.174 0.00 0.00 33.78 5.19
1648 1714 3.119459 AGGTGAGCGCACTATTATATCCG 60.119 47.826 20.23 0.00 44.52 4.18
1691 1760 7.397192 ACCTTCAAATCCATGCTTACTGTAAAT 59.603 33.333 1.46 0.00 0.00 1.40
1695 1764 4.666512 ACCTTCAAATCCATGCTTACTGT 58.333 39.130 0.00 0.00 0.00 3.55
1697 1766 6.904626 AGATACCTTCAAATCCATGCTTACT 58.095 36.000 0.00 0.00 0.00 2.24
1720 1789 5.753438 TGCTTAATTTCTCATACCTGCGTAG 59.247 40.000 0.00 0.00 0.00 3.51
1754 1823 2.544685 CTAACATCCAGAAGCCACTCG 58.455 52.381 0.00 0.00 0.00 4.18
1799 1869 8.239314 GGTTAGATACATCCATTATGCATTGTG 58.761 37.037 3.54 4.16 39.39 3.33
1828 1901 6.593770 CAGGAAACCTTTACAACAAAGCTTTT 59.406 34.615 9.53 0.00 0.00 2.27
1869 1946 5.923684 TCGCTTGTTTCTTTGTTCTTTTTGT 59.076 32.000 0.00 0.00 0.00 2.83
1870 1947 6.089417 AGTCGCTTGTTTCTTTGTTCTTTTTG 59.911 34.615 0.00 0.00 0.00 2.44
1874 1951 4.965119 AGTCGCTTGTTTCTTTGTTCTT 57.035 36.364 0.00 0.00 0.00 2.52
1876 1953 5.807344 ACTAAGTCGCTTGTTTCTTTGTTC 58.193 37.500 2.86 0.00 0.00 3.18
2018 2096 7.335924 TCAGCAGGTAAAATACTTGACATAACC 59.664 37.037 4.08 0.00 37.93 2.85
2070 2308 9.803315 GATCATCATTGTACTACAGTAGTCAAA 57.197 33.333 16.91 12.48 40.14 2.69
2126 2364 5.895636 TGGCAGTCAATGTAATAAACCTG 57.104 39.130 0.00 0.00 0.00 4.00
2330 2769 8.726988 ACATAAACAACGAAATAGTTACAGCAT 58.273 29.630 0.00 0.00 32.35 3.79
2412 2887 9.923143 CGGTAACATTCTTTCACCATATAGATA 57.077 33.333 0.00 0.00 0.00 1.98
2413 2888 8.429641 ACGGTAACATTCTTTCACCATATAGAT 58.570 33.333 0.00 0.00 0.00 1.98
2414 2889 7.788026 ACGGTAACATTCTTTCACCATATAGA 58.212 34.615 0.00 0.00 0.00 1.98
2415 2890 8.433421 AACGGTAACATTCTTTCACCATATAG 57.567 34.615 0.00 0.00 0.00 1.31
2525 3002 6.459161 GCCCATTAACTATAAAAACTGGTCCG 60.459 42.308 0.00 0.00 0.00 4.79
2532 3009 8.074370 GGAATCGAGCCCATTAACTATAAAAAC 58.926 37.037 0.00 0.00 0.00 2.43
2791 3268 4.086457 GACCAACCAAATAGGAACCACAT 58.914 43.478 0.00 0.00 41.22 3.21
2811 3288 8.028540 TGAAATATATCATGCATACAACGGAC 57.971 34.615 0.00 0.00 0.00 4.79
2931 3408 1.407936 ATATCGCACACCTCTCAGCT 58.592 50.000 0.00 0.00 0.00 4.24
2945 3422 8.648097 GCATCACAGGTAATTAAGTGTATATCG 58.352 37.037 11.47 0.00 33.84 2.92
2990 3467 4.991776 TGTATCAGTTCACAATTTGGGGA 58.008 39.130 0.00 0.00 0.00 4.81
3180 3657 2.028020 GGTCCTGGTCGAAAGAATGACT 60.028 50.000 0.00 0.00 45.01 3.41
3182 3659 1.278127 GGGTCCTGGTCGAAAGAATGA 59.722 52.381 0.00 0.00 45.01 2.57
3184 3661 1.358152 TGGGTCCTGGTCGAAAGAAT 58.642 50.000 0.00 0.00 45.01 2.40
3185 3662 1.133363 TTGGGTCCTGGTCGAAAGAA 58.867 50.000 0.00 0.00 45.01 2.52
3191 3668 0.688487 TTAGGTTTGGGTCCTGGTCG 59.312 55.000 0.00 0.00 36.60 4.79
3198 3675 4.023450 GCTGTTACTTGTTAGGTTTGGGTC 60.023 45.833 0.00 0.00 0.00 4.46
3263 3740 2.760385 GACCCACTAGGCGCTCCT 60.760 66.667 7.64 0.00 46.57 3.69
3269 3746 1.139853 CCTTCAGATGACCCACTAGGC 59.860 57.143 0.00 0.00 40.58 3.93
3396 3878 2.950975 TGTGTTACACGTGTACAGAGGA 59.049 45.455 27.36 9.63 37.14 3.71
3430 3914 0.180171 ATTATGCCGTGCCAGCTACA 59.820 50.000 0.00 0.00 0.00 2.74
3467 3951 9.444600 AGAGCGTATTTAATCTAACCTCAAAAA 57.555 29.630 0.00 0.00 0.00 1.94
3589 4074 1.066430 GGCATGTTTGAGACGACCCTA 60.066 52.381 0.00 0.00 0.00 3.53
3604 4089 2.105128 GACGTCTCGAGGGGCATG 59.895 66.667 13.56 0.72 0.00 4.06
3672 4157 1.815421 GCACACGAATGGCTCCGAT 60.815 57.895 0.00 0.00 0.00 4.18
3735 4220 0.111061 ACAGCACTCAAATGGCTCCA 59.889 50.000 0.00 0.00 35.27 3.86
3763 4248 2.064762 CAAGGAAGTCTTCGAGTGCTG 58.935 52.381 6.50 0.00 32.41 4.41
3773 4258 1.067495 GCGAGTACAGCAAGGAAGTCT 60.067 52.381 8.24 0.00 34.19 3.24
3817 4302 1.843376 ACAGGTGTCCCCAGACCAG 60.843 63.158 0.00 0.00 42.81 4.00
3867 4352 6.038050 ACGAGTACATGGCTAAGAAGTAGTAC 59.962 42.308 0.00 0.00 31.78 2.73
3900 4389 7.271936 ACGAACAATACAAACACAAAAACTG 57.728 32.000 0.00 0.00 0.00 3.16
3911 4400 6.066054 TGCATCTGAAACGAACAATACAAA 57.934 33.333 0.00 0.00 0.00 2.83
3943 4432 1.822990 ACATTCAGATACCGTGGACGT 59.177 47.619 0.00 0.00 37.74 4.34
3982 4471 4.081917 GGAAAGATTTTTATGGGTTGCCGA 60.082 41.667 0.00 0.00 0.00 5.54
3984 4473 4.180817 CGGAAAGATTTTTATGGGTTGCC 58.819 43.478 0.00 0.00 0.00 4.52
4008 4497 1.592669 CATCCATGTCGGCGGAGAC 60.593 63.158 7.21 0.00 41.30 3.36
4011 4500 2.186644 CACATCCATGTCGGCGGA 59.813 61.111 7.21 0.00 39.39 5.54
4012 4501 2.896854 CCACATCCATGTCGGCGG 60.897 66.667 7.21 0.00 39.39 6.13
4013 4502 2.896854 CCCACATCCATGTCGGCG 60.897 66.667 0.00 0.00 39.39 6.46
4014 4503 1.524621 CTCCCACATCCATGTCGGC 60.525 63.158 0.00 0.00 38.70 5.54
4016 4505 0.179073 GTCCTCCCACATCCATGTCG 60.179 60.000 0.00 0.00 39.39 4.35
4017 4506 0.179073 CGTCCTCCCACATCCATGTC 60.179 60.000 0.00 0.00 39.39 3.06
4018 4507 0.617535 TCGTCCTCCCACATCCATGT 60.618 55.000 0.00 0.00 42.84 3.21
4019 4508 0.179073 GTCGTCCTCCCACATCCATG 60.179 60.000 0.00 0.00 0.00 3.66
4021 4510 0.617535 ATGTCGTCCTCCCACATCCA 60.618 55.000 0.00 0.00 0.00 3.41
4022 4511 0.105039 GATGTCGTCCTCCCACATCC 59.895 60.000 0.00 0.00 40.33 3.51
4023 4512 0.105039 GGATGTCGTCCTCCCACATC 59.895 60.000 3.60 3.17 44.16 3.06
4025 4514 3.708210 GGATGTCGTCCTCCCACA 58.292 61.111 3.60 0.00 44.16 4.17
4074 4585 4.912766 GCACGAATTTCATCCGTTTGTTAA 59.087 37.500 0.00 0.00 33.96 2.01
4075 4586 4.023963 TGCACGAATTTCATCCGTTTGTTA 60.024 37.500 0.00 0.00 33.96 2.41
4086 4597 4.222886 CGGTAATGTTTGCACGAATTTCA 58.777 39.130 0.00 0.00 0.00 2.69
4093 4604 2.911819 AATCCGGTAATGTTTGCACG 57.088 45.000 0.00 0.00 0.00 5.34
4098 4609 9.581099 GAAATGTAATGAAATCCGGTAATGTTT 57.419 29.630 0.00 0.00 0.00 2.83
4103 4614 8.577296 TGTTTGAAATGTAATGAAATCCGGTAA 58.423 29.630 0.00 0.00 0.00 2.85
4104 4615 8.112016 TGTTTGAAATGTAATGAAATCCGGTA 57.888 30.769 0.00 0.00 0.00 4.02
4105 4616 6.987386 TGTTTGAAATGTAATGAAATCCGGT 58.013 32.000 0.00 0.00 0.00 5.28
4106 4617 8.477984 AATGTTTGAAATGTAATGAAATCCGG 57.522 30.769 0.00 0.00 0.00 5.14
4124 4635 6.202762 GGCCTTTTTCTGGTTCTAAATGTTTG 59.797 38.462 0.00 0.00 0.00 2.93
4125 4636 6.099701 AGGCCTTTTTCTGGTTCTAAATGTTT 59.900 34.615 0.00 0.00 0.00 2.83
4134 4645 0.318441 GGCAGGCCTTTTTCTGGTTC 59.682 55.000 0.00 0.00 0.00 3.62
4140 4651 0.251608 TACAGGGGCAGGCCTTTTTC 60.252 55.000 13.81 0.00 36.10 2.29
4147 4659 0.036875 GGATATGTACAGGGGCAGGC 59.963 60.000 0.33 0.00 0.00 4.85
4150 4662 3.838317 GTCATAGGATATGTACAGGGGCA 59.162 47.826 0.33 0.00 0.00 5.36
4152 4664 4.158025 GTCGTCATAGGATATGTACAGGGG 59.842 50.000 0.33 0.00 0.00 4.79
4155 4667 5.182190 AGCTGTCGTCATAGGATATGTACAG 59.818 44.000 0.33 16.45 35.94 2.74
4157 4669 5.392165 GGAGCTGTCGTCATAGGATATGTAC 60.392 48.000 0.00 0.00 0.00 2.90
4158 4670 4.700692 GGAGCTGTCGTCATAGGATATGTA 59.299 45.833 0.00 0.00 0.00 2.29
4161 4673 4.040936 AGGAGCTGTCGTCATAGGATAT 57.959 45.455 0.00 0.00 0.00 1.63
4163 4675 2.363680 CAAGGAGCTGTCGTCATAGGAT 59.636 50.000 0.00 0.00 0.00 3.24
4169 4681 2.049156 CGCAAGGAGCTGTCGTCA 60.049 61.111 0.00 0.00 42.61 4.35
4170 4682 1.618640 GAACGCAAGGAGCTGTCGTC 61.619 60.000 0.00 0.00 46.39 4.20
4174 4686 2.621763 CTTGAACGCAAGGAGCTGT 58.378 52.632 0.00 0.00 46.13 4.40
4182 4694 1.771073 CGACACAGGCTTGAACGCAA 61.771 55.000 1.40 0.00 0.00 4.85
4183 4695 2.243957 CGACACAGGCTTGAACGCA 61.244 57.895 1.40 0.00 0.00 5.24
4188 4700 0.033504 GAAGGACGACACAGGCTTGA 59.966 55.000 1.40 0.00 0.00 3.02
4195 4707 1.080093 GCGGATGAAGGACGACACA 60.080 57.895 0.00 0.00 0.00 3.72
4201 4713 1.066858 TGAAGACAGCGGATGAAGGAC 60.067 52.381 0.00 0.00 0.00 3.85
4206 4718 2.168313 TGCTTATGAAGACAGCGGATGA 59.832 45.455 0.00 0.00 0.00 2.92
4214 4726 1.136110 TCGCCGATGCTTATGAAGACA 59.864 47.619 0.00 0.00 34.43 3.41
4223 4735 3.290776 GGTCTTATCGCCGATGCTT 57.709 52.632 10.41 0.00 34.43 3.91
4259 4771 2.523453 GAAGGACCCTTGCCGGAGAC 62.523 65.000 5.05 0.00 36.26 3.36
4260 4772 2.203938 AAGGACCCTTGCCGGAGA 60.204 61.111 5.05 0.00 34.60 3.71
4261 4773 1.915078 ATGAAGGACCCTTGCCGGAG 61.915 60.000 5.05 0.00 36.26 4.63
4262 4774 1.910580 GATGAAGGACCCTTGCCGGA 61.911 60.000 5.05 0.00 36.26 5.14
4263 4775 1.452108 GATGAAGGACCCTTGCCGG 60.452 63.158 5.96 0.00 36.26 6.13
4264 4776 1.452108 GGATGAAGGACCCTTGCCG 60.452 63.158 5.96 0.00 36.26 5.69
4265 4777 1.452108 CGGATGAAGGACCCTTGCC 60.452 63.158 5.96 4.29 36.26 4.52
4266 4778 2.115291 GCGGATGAAGGACCCTTGC 61.115 63.158 5.96 0.00 36.26 4.01
4267 4779 0.745845 CAGCGGATGAAGGACCCTTG 60.746 60.000 5.96 0.00 36.26 3.61
4268 4780 1.201429 ACAGCGGATGAAGGACCCTT 61.201 55.000 0.00 0.04 39.23 3.95
4269 4781 1.613630 ACAGCGGATGAAGGACCCT 60.614 57.895 0.00 0.00 0.00 4.34
4270 4782 1.153349 GACAGCGGATGAAGGACCC 60.153 63.158 0.00 0.00 0.00 4.46
4271 4783 0.250513 AAGACAGCGGATGAAGGACC 59.749 55.000 0.00 0.00 0.00 4.46
4272 4784 1.066858 TGAAGACAGCGGATGAAGGAC 60.067 52.381 0.00 0.00 0.00 3.85
4273 4785 1.266178 TGAAGACAGCGGATGAAGGA 58.734 50.000 0.00 0.00 0.00 3.36
4274 4786 2.322355 ATGAAGACAGCGGATGAAGG 57.678 50.000 0.00 0.00 0.00 3.46
4275 4787 3.247173 GCTTATGAAGACAGCGGATGAAG 59.753 47.826 0.00 0.00 0.00 3.02
4276 4788 3.198068 GCTTATGAAGACAGCGGATGAA 58.802 45.455 0.00 0.00 0.00 2.57
4277 4789 2.168313 TGCTTATGAAGACAGCGGATGA 59.832 45.455 0.00 0.00 0.00 2.92
4278 4790 2.554142 TGCTTATGAAGACAGCGGATG 58.446 47.619 0.00 0.00 0.00 3.51
4279 4791 2.988010 TGCTTATGAAGACAGCGGAT 57.012 45.000 0.00 0.00 0.00 4.18
4280 4792 2.799562 CGATGCTTATGAAGACAGCGGA 60.800 50.000 11.01 0.00 39.19 5.54
4281 4793 1.524355 CGATGCTTATGAAGACAGCGG 59.476 52.381 11.01 0.00 39.19 5.52
4282 4794 1.524355 CCGATGCTTATGAAGACAGCG 59.476 52.381 11.57 11.57 40.98 5.18
4283 4795 1.262683 GCCGATGCTTATGAAGACAGC 59.737 52.381 0.00 0.00 33.53 4.40
4284 4796 1.524355 CGCCGATGCTTATGAAGACAG 59.476 52.381 0.00 0.00 34.43 3.51
4285 4797 1.136110 TCGCCGATGCTTATGAAGACA 59.864 47.619 0.00 0.00 34.43 3.41
4286 4798 1.852942 TCGCCGATGCTTATGAAGAC 58.147 50.000 0.00 0.00 34.43 3.01
4287 4799 2.820059 ATCGCCGATGCTTATGAAGA 57.180 45.000 0.00 0.00 34.43 2.87
4288 4800 4.090642 GTCTTATCGCCGATGCTTATGAAG 59.909 45.833 10.41 3.56 34.43 3.02
4289 4801 3.987868 GTCTTATCGCCGATGCTTATGAA 59.012 43.478 10.41 0.00 34.43 2.57
4290 4802 3.575630 GTCTTATCGCCGATGCTTATGA 58.424 45.455 10.41 0.00 34.43 2.15
4291 4803 2.668457 GGTCTTATCGCCGATGCTTATG 59.332 50.000 10.41 0.00 34.43 1.90
4292 4804 2.960819 GGTCTTATCGCCGATGCTTAT 58.039 47.619 10.41 0.00 34.43 1.73
4293 4805 2.433868 GGTCTTATCGCCGATGCTTA 57.566 50.000 10.41 0.00 34.43 3.09
4294 4806 3.290776 GGTCTTATCGCCGATGCTT 57.709 52.632 10.41 0.00 34.43 3.91
4301 4813 2.128035 CACTTCATCGGTCTTATCGCC 58.872 52.381 0.00 0.00 0.00 5.54
4302 4814 3.079960 TCACTTCATCGGTCTTATCGC 57.920 47.619 0.00 0.00 0.00 4.58
4303 4815 4.045104 CCTTCACTTCATCGGTCTTATCG 58.955 47.826 0.00 0.00 0.00 2.92
4304 4816 4.806247 CACCTTCACTTCATCGGTCTTATC 59.194 45.833 0.00 0.00 0.00 1.75
4305 4817 4.759782 CACCTTCACTTCATCGGTCTTAT 58.240 43.478 0.00 0.00 0.00 1.73
4306 4818 3.616560 GCACCTTCACTTCATCGGTCTTA 60.617 47.826 0.00 0.00 0.00 2.10
4307 4819 2.872038 GCACCTTCACTTCATCGGTCTT 60.872 50.000 0.00 0.00 0.00 3.01
4308 4820 1.338200 GCACCTTCACTTCATCGGTCT 60.338 52.381 0.00 0.00 0.00 3.85
4309 4821 1.079503 GCACCTTCACTTCATCGGTC 58.920 55.000 0.00 0.00 0.00 4.79
4310 4822 0.321653 GGCACCTTCACTTCATCGGT 60.322 55.000 0.00 0.00 0.00 4.69
4311 4823 1.361668 CGGCACCTTCACTTCATCGG 61.362 60.000 0.00 0.00 0.00 4.18
4312 4824 0.670546 ACGGCACCTTCACTTCATCG 60.671 55.000 0.00 0.00 0.00 3.84
4313 4825 1.079503 GACGGCACCTTCACTTCATC 58.920 55.000 0.00 0.00 0.00 2.92
4314 4826 0.687354 AGACGGCACCTTCACTTCAT 59.313 50.000 0.00 0.00 0.00 2.57
4315 4827 0.033504 GAGACGGCACCTTCACTTCA 59.966 55.000 0.00 0.00 0.00 3.02
4316 4828 0.670854 GGAGACGGCACCTTCACTTC 60.671 60.000 0.00 0.00 0.00 3.01
4317 4829 1.371558 GGAGACGGCACCTTCACTT 59.628 57.895 0.00 0.00 0.00 3.16
4318 4830 3.060866 GGAGACGGCACCTTCACT 58.939 61.111 0.00 0.00 0.00 3.41
4337 4849 5.361285 TCTCCTATGTTCTACTCTTCCTTGC 59.639 44.000 0.00 0.00 0.00 4.01
4339 4851 5.591067 CGTCTCCTATGTTCTACTCTTCCTT 59.409 44.000 0.00 0.00 0.00 3.36
4355 4867 0.333652 TGTCCCATGTCCGTCTCCTA 59.666 55.000 0.00 0.00 0.00 2.94
4356 4868 1.078528 TGTCCCATGTCCGTCTCCT 59.921 57.895 0.00 0.00 0.00 3.69
4380 4900 3.078196 TCCATGAAGGCGGCGGTA 61.078 61.111 9.78 0.00 37.29 4.02
4381 4901 4.778143 GTCCATGAAGGCGGCGGT 62.778 66.667 9.78 0.00 37.29 5.68
4410 4976 1.821759 CGGCGCCACCATTTCCATA 60.822 57.895 28.98 0.00 39.03 2.74
4425 4991 3.723348 GACAAGAACGGCACCGGC 61.723 66.667 14.51 5.08 44.69 6.13
4426 4992 3.047877 GGACAAGAACGGCACCGG 61.048 66.667 14.51 0.00 44.69 5.28
4446 5012 2.589157 AAACCATCAGCCGGACCGA 61.589 57.895 17.49 0.00 0.00 4.69
4447 5013 2.046314 AAACCATCAGCCGGACCG 60.046 61.111 5.05 6.99 0.00 4.79
4450 5016 1.375396 CGACAAACCATCAGCCGGA 60.375 57.895 5.05 0.00 0.00 5.14
4453 5019 1.926511 CTGCCGACAAACCATCAGCC 61.927 60.000 0.00 0.00 0.00 4.85
4454 5020 1.503542 CTGCCGACAAACCATCAGC 59.496 57.895 0.00 0.00 0.00 4.26
4455 5021 1.503542 GCTGCCGACAAACCATCAG 59.496 57.895 0.00 0.00 0.00 2.90
4461 5027 3.348967 CTACGCGCTGCCGACAAAC 62.349 63.158 5.73 0.00 36.29 2.93
4475 5041 2.579787 CGAGTTGCGCCTCCTACG 60.580 66.667 4.18 0.00 0.00 3.51
4491 5057 2.470286 GCGGAAGAGAACAACGCG 59.530 61.111 3.53 3.53 40.84 6.01
4494 5060 1.710013 TGATCGCGGAAGAGAACAAC 58.290 50.000 6.13 0.00 44.84 3.32
4500 5066 1.009078 TGCAAATGATCGCGGAAGAG 58.991 50.000 6.13 0.00 0.00 2.85
4503 5069 1.135717 CAGTTGCAAATGATCGCGGAA 60.136 47.619 21.79 0.00 0.00 4.30
4505 5071 1.135699 GCAGTTGCAAATGATCGCGG 61.136 55.000 29.48 3.97 41.59 6.46
4510 5076 1.133025 GTAGGCGCAGTTGCAAATGAT 59.867 47.619 29.48 13.93 42.21 2.45
4513 5079 1.501741 CGTAGGCGCAGTTGCAAAT 59.498 52.632 10.83 0.00 42.21 2.32
4514 5080 2.942879 CGTAGGCGCAGTTGCAAA 59.057 55.556 10.83 0.00 42.21 3.68
4557 5123 3.112709 GTCGTCCGCACTCAAGCC 61.113 66.667 0.00 0.00 0.00 4.35
4573 5139 3.153024 AGCGTGCCATTTACGATGT 57.847 47.368 1.32 0.00 43.82 3.06
4580 5146 3.434319 CGGAGCAGCGTGCCATTT 61.434 61.111 6.39 0.00 46.52 2.32
4599 5165 1.801025 GCAACAAACCCCAACTTCGTG 60.801 52.381 0.00 0.00 0.00 4.35
4649 5216 2.727647 CAGATCTACGGCGAGCGC 60.728 66.667 16.62 6.27 41.06 5.92
4672 5239 4.393155 AGCAGCATCGGTTGGCGA 62.393 61.111 0.00 0.00 34.54 5.54
4678 5245 1.112315 CCTCCTAGAGCAGCATCGGT 61.112 60.000 0.00 0.00 0.00 4.69
4682 5249 1.871418 TGTTCCTCCTAGAGCAGCAT 58.129 50.000 0.00 0.00 0.00 3.79
4687 5254 3.618690 ACAACATGTTCCTCCTAGAGC 57.381 47.619 8.48 0.00 0.00 4.09
4691 5258 3.167485 ACGGTACAACATGTTCCTCCTA 58.833 45.455 8.48 0.00 35.90 2.94
4721 5288 1.079543 AGTGTTCTAGCAGGCGCAG 60.080 57.895 10.83 1.27 42.27 5.18
4724 5291 2.359214 TCTATCAGTGTTCTAGCAGGCG 59.641 50.000 0.00 0.00 0.00 5.52
4734 5301 2.496070 TGTTAGCGCCTCTATCAGTGTT 59.504 45.455 2.29 0.00 0.00 3.32
4739 5306 2.430694 ACATGTGTTAGCGCCTCTATCA 59.569 45.455 2.29 0.00 0.00 2.15
4741 5308 2.543861 CGACATGTGTTAGCGCCTCTAT 60.544 50.000 1.15 0.00 0.00 1.98
4742 5309 1.202256 CGACATGTGTTAGCGCCTCTA 60.202 52.381 1.15 0.00 0.00 2.43
4744 5311 1.999051 CGACATGTGTTAGCGCCTC 59.001 57.895 1.15 0.00 0.00 4.70
4751 5318 0.389296 CGGAGGTGCGACATGTGTTA 60.389 55.000 1.15 0.00 0.00 2.41
4752 5319 1.667830 CGGAGGTGCGACATGTGTT 60.668 57.895 1.15 0.00 0.00 3.32
4753 5320 2.048222 CGGAGGTGCGACATGTGT 60.048 61.111 1.15 0.00 0.00 3.72
4755 5322 4.760047 GGCGGAGGTGCGACATGT 62.760 66.667 0.00 0.00 35.06 3.21
4758 5325 4.758251 CATGGCGGAGGTGCGACA 62.758 66.667 0.58 0.58 35.06 4.35
4791 5358 0.691078 ACCATGGAGTAGGTGCCGAT 60.691 55.000 21.47 0.00 36.60 4.18
4792 5359 1.305802 ACCATGGAGTAGGTGCCGA 60.306 57.895 21.47 0.00 36.60 5.54
4797 5364 1.825474 CGACTTCACCATGGAGTAGGT 59.175 52.381 21.47 9.42 39.10 3.08
4812 5379 2.029288 CTCATGTGCACGCCGACTT 61.029 57.895 13.13 0.00 0.00 3.01
4815 5382 2.125952 CTCTCATGTGCACGCCGA 60.126 61.111 13.13 7.40 0.00 5.54
4816 5383 3.190849 CCTCTCATGTGCACGCCG 61.191 66.667 13.13 2.80 0.00 6.46
4819 5386 3.190849 CCGCCTCTCATGTGCACG 61.191 66.667 13.13 0.00 0.00 5.34
4842 5409 3.069980 GCTCCGATGACTCCGCACT 62.070 63.158 0.00 0.00 0.00 4.40
4844 5411 3.838271 GGCTCCGATGACTCCGCA 61.838 66.667 0.00 0.00 0.00 5.69
4863 5430 2.402640 GACGATACCACGATGGAGAC 57.597 55.000 10.46 1.79 40.96 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.