Multiple sequence alignment - TraesCS4B01G199300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G199300 chr4B 100.000 4251 0 0 1 4251 428014270 428018520 0.000000e+00 7851.0
1 TraesCS4B01G199300 chr4B 83.392 283 38 7 3412 3691 428017408 428017684 1.960000e-63 254.0
2 TraesCS4B01G199300 chr4B 83.451 284 36 8 3139 3415 428017681 428017960 1.960000e-63 254.0
3 TraesCS4B01G199300 chr4D 97.204 3362 87 4 892 4251 347509357 347512713 0.000000e+00 5681.0
4 TraesCS4B01G199300 chr4D 83.509 285 34 9 3139 3415 347511876 347512155 1.960000e-63 254.0
5 TraesCS4B01G199300 chr4D 82.624 282 41 6 3412 3691 347511604 347511879 4.250000e-60 243.0
6 TraesCS4B01G199300 chr4A 97.125 2783 79 1 1030 3812 117941827 117939046 0.000000e+00 4695.0
7 TraesCS4B01G199300 chr4A 93.166 439 20 6 3812 4250 117899841 117899413 1.670000e-178 636.0
8 TraesCS4B01G199300 chr4A 86.228 334 22 11 707 1025 117942341 117942017 1.460000e-89 340.0
9 TraesCS4B01G199300 chr4A 83.688 282 38 6 3412 3691 117939718 117939443 4.220000e-65 259.0
10 TraesCS4B01G199300 chr4A 86.275 204 28 0 460 663 730138519 730138722 5.530000e-54 222.0
11 TraesCS4B01G199300 chr4A 84.615 234 19 3 38 261 117943172 117942946 2.570000e-52 217.0
12 TraesCS4B01G199300 chr2A 85.279 394 40 11 271 657 19643814 19643432 1.430000e-104 390.0
13 TraesCS4B01G199300 chr7D 84.021 388 50 9 260 639 113882368 113881985 3.120000e-96 363.0
14 TraesCS4B01G199300 chr7D 84.395 314 31 14 361 663 529693119 529692813 4.160000e-75 292.0
15 TraesCS4B01G199300 chr6B 87.077 325 34 6 353 670 614586494 614586171 1.120000e-95 361.0
16 TraesCS4B01G199300 chr5B 81.687 415 63 11 259 663 618289307 618288896 2.450000e-87 333.0
17 TraesCS4B01G199300 chr5B 83.175 315 42 6 361 669 44180599 44180290 1.160000e-70 278.0
18 TraesCS4B01G199300 chr6D 81.081 407 53 10 259 663 71516995 71517379 1.920000e-78 303.0
19 TraesCS4B01G199300 chr3D 77.566 419 69 17 271 676 122666268 122665862 3.310000e-56 230.0
20 TraesCS4B01G199300 chrUn 90.435 115 6 5 529 640 205782212 205782324 3.430000e-31 147.0
21 TraesCS4B01G199300 chr5A 97.059 34 0 1 625 658 632356206 632356174 5.940000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G199300 chr4B 428014270 428018520 4250 False 2786.333333 7851 88.947667 1 4251 3 chr4B.!!$F1 4250
1 TraesCS4B01G199300 chr4D 347509357 347512713 3356 False 2059.333333 5681 87.779000 892 4251 3 chr4D.!!$F1 3359
2 TraesCS4B01G199300 chr4A 117939046 117943172 4126 True 1377.750000 4695 87.914000 38 3812 4 chr4A.!!$R2 3774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
803 1377 0.039617 TGCGGCAATTTTGAAGTCGG 60.040 50.000 0.0 0.0 0.00 4.79 F
2062 2837 0.318699 CGCCAGTCTGACGTTCTTGA 60.319 55.000 0.0 0.0 0.00 3.02 F
2372 3147 1.456287 GGAGGCACTGGACCTGTTT 59.544 57.895 0.4 0.0 41.55 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2645 3420 0.110056 GCTCAACATCACCAACTGCG 60.110 55.0 0.0 0.0 0.00 5.18 R
2876 3651 0.243365 TGCCCGCTTTGCTAACAATG 59.757 50.0 0.0 0.0 35.21 2.82 R
3932 4707 0.877071 AAGGCAGATCTTGTTGTGCG 59.123 50.0 0.0 0.0 36.76 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.357951 GAAGAACACTAAGACATTGAAGGAG 57.642 40.000 0.00 0.00 0.00 3.69
25 26 5.799213 AGAACACTAAGACATTGAAGGAGG 58.201 41.667 0.00 0.00 0.00 4.30
26 27 4.559862 ACACTAAGACATTGAAGGAGGG 57.440 45.455 0.00 0.00 0.00 4.30
27 28 3.274288 CACTAAGACATTGAAGGAGGGC 58.726 50.000 0.00 0.00 0.00 5.19
28 29 3.054802 CACTAAGACATTGAAGGAGGGCT 60.055 47.826 0.00 0.00 0.00 5.19
29 30 2.797177 AAGACATTGAAGGAGGGCTC 57.203 50.000 0.00 0.00 0.00 4.70
30 31 0.539051 AGACATTGAAGGAGGGCTCG 59.461 55.000 0.00 0.00 0.00 5.03
31 32 0.537188 GACATTGAAGGAGGGCTCGA 59.463 55.000 0.00 0.00 0.00 4.04
32 33 0.539051 ACATTGAAGGAGGGCTCGAG 59.461 55.000 8.45 8.45 0.00 4.04
33 34 0.179062 CATTGAAGGAGGGCTCGAGG 60.179 60.000 15.58 0.00 0.00 4.63
34 35 0.618968 ATTGAAGGAGGGCTCGAGGT 60.619 55.000 15.58 0.00 0.00 3.85
35 36 1.544825 TTGAAGGAGGGCTCGAGGTG 61.545 60.000 15.58 0.00 0.00 4.00
36 37 1.985116 GAAGGAGGGCTCGAGGTGT 60.985 63.158 15.58 0.00 0.00 4.16
101 102 0.395312 CCCCAACAACGACACCTACT 59.605 55.000 0.00 0.00 0.00 2.57
131 132 2.952310 GAGCTTTACATAAGGGCAAGGG 59.048 50.000 0.00 0.00 0.00 3.95
132 133 1.409064 GCTTTACATAAGGGCAAGGGC 59.591 52.381 0.00 0.00 40.13 5.19
133 134 2.733956 CTTTACATAAGGGCAAGGGCA 58.266 47.619 0.00 0.00 43.71 5.36
134 135 2.909504 TTACATAAGGGCAAGGGCAA 57.090 45.000 0.00 0.00 43.71 4.52
135 136 2.909504 TACATAAGGGCAAGGGCAAA 57.090 45.000 0.00 0.00 43.71 3.68
136 137 2.252535 ACATAAGGGCAAGGGCAAAT 57.747 45.000 0.00 0.00 43.71 2.32
137 138 1.832998 ACATAAGGGCAAGGGCAAATG 59.167 47.619 0.00 0.00 43.71 2.32
147 148 0.901580 AGGGCAAATGCTGGTGAAGG 60.902 55.000 5.25 0.00 41.70 3.46
150 151 1.202348 GGCAAATGCTGGTGAAGGTAC 59.798 52.381 5.25 0.00 41.70 3.34
168 178 5.085219 AGGTACTTCCCTGTATAGTATGCC 58.915 45.833 0.00 0.00 27.25 4.40
171 181 4.303794 ACTTCCCTGTATAGTATGCCCAA 58.696 43.478 0.00 0.00 0.00 4.12
175 185 4.464951 TCCCTGTATAGTATGCCCAATACG 59.535 45.833 0.00 0.00 45.10 3.06
199 210 8.665685 ACGATGTCCTTTTGTTATTGAACTATC 58.334 33.333 0.00 0.00 36.45 2.08
202 213 8.025243 TGTCCTTTTGTTATTGAACTATCGTC 57.975 34.615 0.00 0.00 36.45 4.20
207 218 8.596271 TTTTGTTATTGAACTATCGTCTGTCA 57.404 30.769 0.00 0.00 36.45 3.58
214 225 7.568199 TTGAACTATCGTCTGTCATCTATCA 57.432 36.000 0.00 0.00 0.00 2.15
269 280 8.525290 TGAACTGACATATCATACTCTCTTCA 57.475 34.615 0.00 0.00 33.22 3.02
270 281 9.140874 TGAACTGACATATCATACTCTCTTCAT 57.859 33.333 0.00 0.00 33.22 2.57
271 282 9.979578 GAACTGACATATCATACTCTCTTCATT 57.020 33.333 0.00 0.00 33.22 2.57
272 283 9.979578 AACTGACATATCATACTCTCTTCATTC 57.020 33.333 0.00 0.00 33.22 2.67
273 284 8.584157 ACTGACATATCATACTCTCTTCATTCC 58.416 37.037 0.00 0.00 33.22 3.01
274 285 8.718158 TGACATATCATACTCTCTTCATTCCT 57.282 34.615 0.00 0.00 0.00 3.36
275 286 9.152327 TGACATATCATACTCTCTTCATTCCTT 57.848 33.333 0.00 0.00 0.00 3.36
276 287 9.995003 GACATATCATACTCTCTTCATTCCTTT 57.005 33.333 0.00 0.00 0.00 3.11
297 308 7.816945 CTTTATGTAAGGTGCATCTTTTTGG 57.183 36.000 19.17 0.00 0.00 3.28
298 309 4.806640 ATGTAAGGTGCATCTTTTTGGG 57.193 40.909 19.17 0.00 0.00 4.12
299 310 2.298729 TGTAAGGTGCATCTTTTTGGGC 59.701 45.455 19.17 2.75 0.00 5.36
300 311 0.318120 AAGGTGCATCTTTTTGGGCG 59.682 50.000 6.34 0.00 0.00 6.13
301 312 1.737735 GGTGCATCTTTTTGGGCGC 60.738 57.895 0.00 0.00 36.11 6.53
302 313 1.006337 GTGCATCTTTTTGGGCGCA 60.006 52.632 10.83 0.00 36.79 6.09
303 314 0.599728 GTGCATCTTTTTGGGCGCAA 60.600 50.000 12.81 12.81 36.79 4.85
304 315 0.321021 TGCATCTTTTTGGGCGCAAT 59.679 45.000 17.68 0.00 0.00 3.56
305 316 0.722848 GCATCTTTTTGGGCGCAATG 59.277 50.000 17.68 12.79 0.00 2.82
306 317 1.672441 GCATCTTTTTGGGCGCAATGA 60.672 47.619 17.68 15.20 0.00 2.57
307 318 1.994779 CATCTTTTTGGGCGCAATGAC 59.005 47.619 17.68 0.00 0.00 3.06
308 319 1.327303 TCTTTTTGGGCGCAATGACT 58.673 45.000 17.68 0.00 0.00 3.41
309 320 2.509569 TCTTTTTGGGCGCAATGACTA 58.490 42.857 17.68 0.00 0.00 2.59
310 321 2.887783 TCTTTTTGGGCGCAATGACTAA 59.112 40.909 17.68 5.25 0.00 2.24
311 322 3.057596 TCTTTTTGGGCGCAATGACTAAG 60.058 43.478 17.68 14.29 0.00 2.18
312 323 1.173043 TTTGGGCGCAATGACTAAGG 58.827 50.000 17.68 0.00 0.00 2.69
313 324 1.312371 TTGGGCGCAATGACTAAGGC 61.312 55.000 12.81 0.00 0.00 4.35
314 325 1.748879 GGGCGCAATGACTAAGGCA 60.749 57.895 10.83 0.00 0.00 4.75
315 326 1.429423 GGCGCAATGACTAAGGCAC 59.571 57.895 10.83 0.00 0.00 5.01
316 327 1.305219 GGCGCAATGACTAAGGCACA 61.305 55.000 10.83 0.00 0.00 4.57
317 328 0.097674 GCGCAATGACTAAGGCACAG 59.902 55.000 0.30 0.00 0.00 3.66
318 329 1.725641 CGCAATGACTAAGGCACAGA 58.274 50.000 0.00 0.00 0.00 3.41
319 330 2.283298 CGCAATGACTAAGGCACAGAT 58.717 47.619 0.00 0.00 0.00 2.90
320 331 2.679837 CGCAATGACTAAGGCACAGATT 59.320 45.455 0.00 0.00 0.00 2.40
321 332 3.127548 CGCAATGACTAAGGCACAGATTT 59.872 43.478 0.00 0.00 0.00 2.17
322 333 4.418392 GCAATGACTAAGGCACAGATTTG 58.582 43.478 0.00 0.00 0.00 2.32
323 334 4.156556 GCAATGACTAAGGCACAGATTTGA 59.843 41.667 0.00 0.00 0.00 2.69
324 335 5.335897 GCAATGACTAAGGCACAGATTTGAA 60.336 40.000 0.00 0.00 0.00 2.69
325 336 6.320171 CAATGACTAAGGCACAGATTTGAAG 58.680 40.000 0.00 0.00 0.00 3.02
326 337 5.227569 TGACTAAGGCACAGATTTGAAGA 57.772 39.130 0.00 0.00 0.00 2.87
327 338 5.809001 TGACTAAGGCACAGATTTGAAGAT 58.191 37.500 0.00 0.00 0.00 2.40
328 339 6.946340 TGACTAAGGCACAGATTTGAAGATA 58.054 36.000 0.00 0.00 0.00 1.98
329 340 7.394016 TGACTAAGGCACAGATTTGAAGATAA 58.606 34.615 0.00 0.00 0.00 1.75
330 341 8.049117 TGACTAAGGCACAGATTTGAAGATAAT 58.951 33.333 0.00 0.00 0.00 1.28
331 342 8.814038 ACTAAGGCACAGATTTGAAGATAATT 57.186 30.769 0.00 0.00 0.00 1.40
332 343 9.247861 ACTAAGGCACAGATTTGAAGATAATTT 57.752 29.630 0.00 0.00 0.00 1.82
334 345 8.992835 AAGGCACAGATTTGAAGATAATTTTC 57.007 30.769 0.00 0.00 0.00 2.29
335 346 7.253422 AGGCACAGATTTGAAGATAATTTTCG 58.747 34.615 0.00 0.00 0.00 3.46
336 347 7.121168 AGGCACAGATTTGAAGATAATTTTCGA 59.879 33.333 0.00 0.00 0.00 3.71
337 348 7.218963 GGCACAGATTTGAAGATAATTTTCGAC 59.781 37.037 0.00 0.00 0.00 4.20
338 349 7.750458 GCACAGATTTGAAGATAATTTTCGACA 59.250 33.333 0.00 0.00 0.00 4.35
339 350 9.611284 CACAGATTTGAAGATAATTTTCGACAA 57.389 29.630 0.00 0.00 0.00 3.18
360 371 9.878599 CGACAAAAATACCATTAGCTAATTAGG 57.121 33.333 16.46 16.96 0.00 2.69
374 385 6.846325 GCTAATTAGGTAGTTAGCAGGTTG 57.154 41.667 14.28 0.00 45.33 3.77
375 386 6.579865 GCTAATTAGGTAGTTAGCAGGTTGA 58.420 40.000 14.28 0.00 45.33 3.18
376 387 7.217906 GCTAATTAGGTAGTTAGCAGGTTGAT 58.782 38.462 14.28 0.00 45.33 2.57
377 388 7.715686 GCTAATTAGGTAGTTAGCAGGTTGATT 59.284 37.037 14.28 0.00 45.33 2.57
380 391 9.780186 AATTAGGTAGTTAGCAGGTTGATTATC 57.220 33.333 0.00 0.00 0.00 1.75
381 392 5.844004 AGGTAGTTAGCAGGTTGATTATCG 58.156 41.667 0.00 0.00 0.00 2.92
382 393 5.597182 AGGTAGTTAGCAGGTTGATTATCGA 59.403 40.000 0.00 0.00 0.00 3.59
383 394 5.690857 GGTAGTTAGCAGGTTGATTATCGAC 59.309 44.000 4.05 4.05 0.00 4.20
384 395 5.339008 AGTTAGCAGGTTGATTATCGACA 57.661 39.130 13.89 0.00 32.35 4.35
385 396 5.352284 AGTTAGCAGGTTGATTATCGACAG 58.648 41.667 13.89 7.27 32.35 3.51
386 397 2.555199 AGCAGGTTGATTATCGACAGC 58.445 47.619 13.89 15.32 35.13 4.40
387 398 2.169352 AGCAGGTTGATTATCGACAGCT 59.831 45.455 19.33 19.33 38.22 4.24
388 399 3.384789 AGCAGGTTGATTATCGACAGCTA 59.615 43.478 21.91 0.00 39.95 3.32
389 400 4.119862 GCAGGTTGATTATCGACAGCTAA 58.880 43.478 13.89 0.00 33.37 3.09
390 401 4.570772 GCAGGTTGATTATCGACAGCTAAA 59.429 41.667 13.89 0.00 33.37 1.85
391 402 5.237344 GCAGGTTGATTATCGACAGCTAAAT 59.763 40.000 13.89 0.00 33.37 1.40
392 403 6.423905 GCAGGTTGATTATCGACAGCTAAATA 59.576 38.462 13.89 0.00 33.37 1.40
393 404 7.042051 GCAGGTTGATTATCGACAGCTAAATAA 60.042 37.037 13.89 0.00 33.37 1.40
394 405 8.276325 CAGGTTGATTATCGACAGCTAAATAAC 58.724 37.037 13.89 0.00 32.35 1.89
395 406 8.204836 AGGTTGATTATCGACAGCTAAATAACT 58.795 33.333 13.89 0.00 32.35 2.24
396 407 9.472361 GGTTGATTATCGACAGCTAAATAACTA 57.528 33.333 13.89 0.00 32.35 2.24
398 409 8.744008 TGATTATCGACAGCTAAATAACTAGC 57.256 34.615 0.00 0.00 43.95 3.42
407 418 5.934935 GCTAAATAACTAGCGGCCATTAA 57.065 39.130 2.24 0.00 35.31 1.40
408 419 6.308371 GCTAAATAACTAGCGGCCATTAAA 57.692 37.500 2.24 0.00 35.31 1.52
409 420 6.731164 GCTAAATAACTAGCGGCCATTAAAA 58.269 36.000 2.24 0.00 35.31 1.52
410 421 6.856426 GCTAAATAACTAGCGGCCATTAAAAG 59.144 38.462 2.24 0.00 35.31 2.27
411 422 5.767816 AATAACTAGCGGCCATTAAAAGG 57.232 39.130 2.24 0.00 0.00 3.11
430 441 3.515330 GGCAACTAAATCTTGCTGCAT 57.485 42.857 1.84 0.00 43.08 3.96
431 442 3.442100 GGCAACTAAATCTTGCTGCATC 58.558 45.455 1.84 0.00 43.08 3.91
432 443 3.119388 GGCAACTAAATCTTGCTGCATCA 60.119 43.478 1.84 0.00 43.08 3.07
433 444 4.103357 GCAACTAAATCTTGCTGCATCAG 58.897 43.478 1.84 0.00 40.79 2.90
434 445 4.142534 GCAACTAAATCTTGCTGCATCAGA 60.143 41.667 1.84 4.63 40.79 3.27
435 446 5.620654 GCAACTAAATCTTGCTGCATCAGAA 60.621 40.000 1.84 0.00 40.79 3.02
436 447 6.561614 CAACTAAATCTTGCTGCATCAGAAT 58.438 36.000 1.84 0.00 32.44 2.40
437 448 7.680350 GCAACTAAATCTTGCTGCATCAGAATA 60.680 37.037 1.84 2.19 40.79 1.75
438 449 7.870509 ACTAAATCTTGCTGCATCAGAATAA 57.129 32.000 1.84 0.00 32.44 1.40
439 450 8.284945 ACTAAATCTTGCTGCATCAGAATAAA 57.715 30.769 1.84 0.00 32.44 1.40
440 451 8.742777 ACTAAATCTTGCTGCATCAGAATAAAA 58.257 29.630 1.84 0.00 32.44 1.52
441 452 9.745880 CTAAATCTTGCTGCATCAGAATAAAAT 57.254 29.630 1.84 0.00 32.44 1.82
442 453 8.644318 AAATCTTGCTGCATCAGAATAAAATC 57.356 30.769 1.84 0.00 32.44 2.17
443 454 6.140303 TCTTGCTGCATCAGAATAAAATCC 57.860 37.500 1.84 0.00 32.44 3.01
444 455 4.556942 TGCTGCATCAGAATAAAATCCG 57.443 40.909 0.00 0.00 32.44 4.18
445 456 3.316029 TGCTGCATCAGAATAAAATCCGG 59.684 43.478 0.00 0.00 32.44 5.14
446 457 3.316308 GCTGCATCAGAATAAAATCCGGT 59.684 43.478 0.00 0.00 32.44 5.28
447 458 4.790766 GCTGCATCAGAATAAAATCCGGTG 60.791 45.833 0.00 0.00 32.44 4.94
448 459 3.631686 TGCATCAGAATAAAATCCGGTGG 59.368 43.478 0.00 0.00 0.00 4.61
449 460 3.004734 GCATCAGAATAAAATCCGGTGGG 59.995 47.826 0.00 0.00 0.00 4.61
458 469 2.041922 TCCGGTGGGATGGGAGAG 60.042 66.667 0.00 0.00 37.43 3.20
459 470 2.041922 CCGGTGGGATGGGAGAGA 60.042 66.667 0.00 0.00 34.06 3.10
460 471 2.136878 CCGGTGGGATGGGAGAGAG 61.137 68.421 0.00 0.00 34.06 3.20
461 472 1.075970 CGGTGGGATGGGAGAGAGA 60.076 63.158 0.00 0.00 0.00 3.10
462 473 0.687757 CGGTGGGATGGGAGAGAGAA 60.688 60.000 0.00 0.00 0.00 2.87
463 474 1.584724 GGTGGGATGGGAGAGAGAAA 58.415 55.000 0.00 0.00 0.00 2.52
464 475 2.131023 GGTGGGATGGGAGAGAGAAAT 58.869 52.381 0.00 0.00 0.00 2.17
465 476 2.158696 GGTGGGATGGGAGAGAGAAATG 60.159 54.545 0.00 0.00 0.00 2.32
466 477 2.507471 GTGGGATGGGAGAGAGAAATGT 59.493 50.000 0.00 0.00 0.00 2.71
467 478 2.507058 TGGGATGGGAGAGAGAAATGTG 59.493 50.000 0.00 0.00 0.00 3.21
468 479 2.774234 GGGATGGGAGAGAGAAATGTGA 59.226 50.000 0.00 0.00 0.00 3.58
469 480 3.181456 GGGATGGGAGAGAGAAATGTGAG 60.181 52.174 0.00 0.00 0.00 3.51
470 481 3.454082 GGATGGGAGAGAGAAATGTGAGT 59.546 47.826 0.00 0.00 0.00 3.41
471 482 4.651503 GGATGGGAGAGAGAAATGTGAGTA 59.348 45.833 0.00 0.00 0.00 2.59
472 483 5.452636 GGATGGGAGAGAGAAATGTGAGTAC 60.453 48.000 0.00 0.00 0.00 2.73
473 484 4.416516 TGGGAGAGAGAAATGTGAGTACA 58.583 43.478 0.00 0.00 41.89 2.90
474 485 4.464244 TGGGAGAGAGAAATGTGAGTACAG 59.536 45.833 0.00 0.00 40.79 2.74
475 486 4.707448 GGGAGAGAGAAATGTGAGTACAGA 59.293 45.833 0.00 0.00 40.79 3.41
476 487 5.186021 GGGAGAGAGAAATGTGAGTACAGAA 59.814 44.000 0.00 0.00 40.79 3.02
477 488 6.295349 GGGAGAGAGAAATGTGAGTACAGAAA 60.295 42.308 0.00 0.00 40.79 2.52
478 489 7.155328 GGAGAGAGAAATGTGAGTACAGAAAA 58.845 38.462 0.00 0.00 40.79 2.29
479 490 7.821846 GGAGAGAGAAATGTGAGTACAGAAAAT 59.178 37.037 0.00 0.00 40.79 1.82
480 491 8.770438 AGAGAGAAATGTGAGTACAGAAAATC 57.230 34.615 0.00 0.00 40.79 2.17
481 492 8.370940 AGAGAGAAATGTGAGTACAGAAAATCA 58.629 33.333 0.00 0.00 40.79 2.57
482 493 8.545229 AGAGAAATGTGAGTACAGAAAATCAG 57.455 34.615 0.00 0.00 40.79 2.90
483 494 8.370940 AGAGAAATGTGAGTACAGAAAATCAGA 58.629 33.333 0.00 0.00 40.79 3.27
484 495 8.545229 AGAAATGTGAGTACAGAAAATCAGAG 57.455 34.615 0.00 0.00 40.79 3.35
485 496 8.370940 AGAAATGTGAGTACAGAAAATCAGAGA 58.629 33.333 0.00 0.00 40.79 3.10
486 497 8.545229 AAATGTGAGTACAGAAAATCAGAGAG 57.455 34.615 0.00 0.00 40.79 3.20
487 498 6.901081 TGTGAGTACAGAAAATCAGAGAGA 57.099 37.500 0.00 0.00 31.91 3.10
488 499 7.473735 TGTGAGTACAGAAAATCAGAGAGAT 57.526 36.000 0.00 0.00 33.40 2.75
489 500 8.581253 TGTGAGTACAGAAAATCAGAGAGATA 57.419 34.615 0.00 0.00 32.40 1.98
490 501 9.194972 TGTGAGTACAGAAAATCAGAGAGATAT 57.805 33.333 0.00 0.00 32.40 1.63
519 530 9.510062 TCTATTTTTACTACCTTCCTATTGGGA 57.490 33.333 0.00 0.00 43.41 4.37
532 543 6.549433 TCCTATTGGGAATACACGTTACTT 57.451 37.500 0.00 0.00 41.91 2.24
533 544 6.949715 TCCTATTGGGAATACACGTTACTTT 58.050 36.000 0.00 0.00 41.91 2.66
534 545 7.396418 TCCTATTGGGAATACACGTTACTTTT 58.604 34.615 0.00 0.00 41.91 2.27
535 546 7.884354 TCCTATTGGGAATACACGTTACTTTTT 59.116 33.333 0.00 0.00 41.91 1.94
536 547 9.165035 CCTATTGGGAATACACGTTACTTTTTA 57.835 33.333 0.00 0.00 37.23 1.52
539 550 8.851541 TTGGGAATACACGTTACTTTTTATCT 57.148 30.769 0.00 0.00 0.00 1.98
540 551 9.941325 TTGGGAATACACGTTACTTTTTATCTA 57.059 29.630 0.00 0.00 0.00 1.98
541 552 9.941325 TGGGAATACACGTTACTTTTTATCTAA 57.059 29.630 0.00 0.00 0.00 2.10
548 559 8.780249 ACACGTTACTTTTTATCTAAAGCATGT 58.220 29.630 0.00 0.00 38.42 3.21
558 569 8.995027 TTTATCTAAAGCATGTAATGGATGGT 57.005 30.769 0.00 0.00 46.86 3.55
559 570 6.889301 ATCTAAAGCATGTAATGGATGGTG 57.111 37.500 0.00 0.00 46.86 4.17
560 571 5.132502 TCTAAAGCATGTAATGGATGGTGG 58.867 41.667 0.00 0.00 46.86 4.61
561 572 3.668141 AAGCATGTAATGGATGGTGGA 57.332 42.857 0.00 0.00 46.86 4.02
562 573 3.668141 AGCATGTAATGGATGGTGGAA 57.332 42.857 0.00 0.00 46.86 3.53
563 574 3.559069 AGCATGTAATGGATGGTGGAAG 58.441 45.455 0.00 0.00 46.86 3.46
564 575 2.624838 GCATGTAATGGATGGTGGAAGG 59.375 50.000 0.00 0.00 46.86 3.46
565 576 3.225104 CATGTAATGGATGGTGGAAGGG 58.775 50.000 0.00 0.00 41.79 3.95
566 577 1.064017 TGTAATGGATGGTGGAAGGGC 60.064 52.381 0.00 0.00 0.00 5.19
567 578 1.064017 GTAATGGATGGTGGAAGGGCA 60.064 52.381 0.00 0.00 0.00 5.36
568 579 0.324645 AATGGATGGTGGAAGGGCAC 60.325 55.000 0.00 0.00 0.00 5.01
569 580 2.438434 GGATGGTGGAAGGGCACG 60.438 66.667 0.00 0.00 0.00 5.34
570 581 3.134127 GATGGTGGAAGGGCACGC 61.134 66.667 0.00 0.00 0.00 5.34
571 582 3.918253 GATGGTGGAAGGGCACGCA 62.918 63.158 0.00 0.00 0.00 5.24
572 583 3.286694 ATGGTGGAAGGGCACGCAT 62.287 57.895 0.00 0.00 0.00 4.73
573 584 3.443045 GGTGGAAGGGCACGCATG 61.443 66.667 0.00 0.00 0.00 4.06
574 585 2.359850 GTGGAAGGGCACGCATGA 60.360 61.111 0.00 0.00 0.00 3.07
575 586 1.971167 GTGGAAGGGCACGCATGAA 60.971 57.895 0.00 0.00 0.00 2.57
576 587 1.228398 TGGAAGGGCACGCATGAAA 60.228 52.632 0.00 0.00 0.00 2.69
577 588 0.825425 TGGAAGGGCACGCATGAAAA 60.825 50.000 0.00 0.00 0.00 2.29
578 589 0.316841 GGAAGGGCACGCATGAAAAA 59.683 50.000 0.00 0.00 0.00 1.94
579 590 1.066929 GGAAGGGCACGCATGAAAAAT 60.067 47.619 0.00 0.00 0.00 1.82
580 591 2.262211 GAAGGGCACGCATGAAAAATC 58.738 47.619 0.00 0.00 0.00 2.17
581 592 0.171007 AGGGCACGCATGAAAAATCG 59.829 50.000 0.00 0.00 0.00 3.34
582 593 1.413008 GGGCACGCATGAAAAATCGC 61.413 55.000 0.00 0.00 0.00 4.58
588 599 2.542766 GCATGAAAAATCGCGAGGAA 57.457 45.000 16.66 0.00 0.00 3.36
589 600 2.862512 GCATGAAAAATCGCGAGGAAA 58.137 42.857 16.66 0.00 0.00 3.13
590 601 3.241701 GCATGAAAAATCGCGAGGAAAA 58.758 40.909 16.66 0.00 0.00 2.29
591 602 3.301642 GCATGAAAAATCGCGAGGAAAAG 59.698 43.478 16.66 1.33 0.00 2.27
592 603 4.722194 CATGAAAAATCGCGAGGAAAAGA 58.278 39.130 16.66 0.00 0.00 2.52
593 604 4.404507 TGAAAAATCGCGAGGAAAAGAG 57.595 40.909 16.66 0.00 0.00 2.85
594 605 4.062293 TGAAAAATCGCGAGGAAAAGAGA 58.938 39.130 16.66 0.00 0.00 3.10
595 606 4.513692 TGAAAAATCGCGAGGAAAAGAGAA 59.486 37.500 16.66 0.00 0.00 2.87
596 607 5.008217 TGAAAAATCGCGAGGAAAAGAGAAA 59.992 36.000 16.66 0.00 0.00 2.52
597 608 5.629079 AAAATCGCGAGGAAAAGAGAAAT 57.371 34.783 16.66 0.00 0.00 2.17
598 609 6.737254 AAAATCGCGAGGAAAAGAGAAATA 57.263 33.333 16.66 0.00 0.00 1.40
599 610 5.720261 AATCGCGAGGAAAAGAGAAATAC 57.280 39.130 16.66 0.00 0.00 1.89
600 611 4.182693 TCGCGAGGAAAAGAGAAATACA 57.817 40.909 3.71 0.00 0.00 2.29
601 612 3.924686 TCGCGAGGAAAAGAGAAATACAC 59.075 43.478 3.71 0.00 0.00 2.90
602 613 3.062234 CGCGAGGAAAAGAGAAATACACC 59.938 47.826 0.00 0.00 0.00 4.16
603 614 4.254492 GCGAGGAAAAGAGAAATACACCT 58.746 43.478 0.00 0.00 0.00 4.00
604 615 4.695928 GCGAGGAAAAGAGAAATACACCTT 59.304 41.667 0.00 0.00 0.00 3.50
605 616 5.873164 GCGAGGAAAAGAGAAATACACCTTA 59.127 40.000 0.00 0.00 0.00 2.69
606 617 6.183360 GCGAGGAAAAGAGAAATACACCTTAC 60.183 42.308 0.00 0.00 0.00 2.34
607 618 6.872020 CGAGGAAAAGAGAAATACACCTTACA 59.128 38.462 0.00 0.00 0.00 2.41
608 619 7.549488 CGAGGAAAAGAGAAATACACCTTACAT 59.451 37.037 0.00 0.00 0.00 2.29
609 620 9.232473 GAGGAAAAGAGAAATACACCTTACATT 57.768 33.333 0.00 0.00 0.00 2.71
610 621 9.014297 AGGAAAAGAGAAATACACCTTACATTG 57.986 33.333 0.00 0.00 0.00 2.82
611 622 8.793592 GGAAAAGAGAAATACACCTTACATTGT 58.206 33.333 0.00 0.00 0.00 2.71
612 623 9.612620 GAAAAGAGAAATACACCTTACATTGTG 57.387 33.333 0.00 0.00 38.44 3.33
613 624 8.918202 AAAGAGAAATACACCTTACATTGTGA 57.082 30.769 0.00 0.00 36.35 3.58
614 625 8.918202 AAGAGAAATACACCTTACATTGTGAA 57.082 30.769 0.00 0.00 36.35 3.18
615 626 9.520515 AAGAGAAATACACCTTACATTGTGAAT 57.479 29.630 0.00 0.00 36.35 2.57
616 627 9.520515 AGAGAAATACACCTTACATTGTGAATT 57.479 29.630 0.00 0.00 36.35 2.17
658 669 9.760077 ATACACCTTATATAAAGAAACGGAGTG 57.240 33.333 8.54 0.00 45.00 3.51
659 670 7.844009 ACACCTTATATAAAGAAACGGAGTGA 58.156 34.615 0.00 0.00 45.00 3.41
660 671 7.980099 ACACCTTATATAAAGAAACGGAGTGAG 59.020 37.037 0.00 0.00 45.00 3.51
661 672 7.980099 CACCTTATATAAAGAAACGGAGTGAGT 59.020 37.037 0.00 0.00 45.00 3.41
662 673 9.193806 ACCTTATATAAAGAAACGGAGTGAGTA 57.806 33.333 0.00 0.00 45.00 2.59
663 674 9.460906 CCTTATATAAAGAAACGGAGTGAGTAC 57.539 37.037 0.00 0.00 45.00 2.73
681 692 6.253298 GTGAGTACGTAGTTTGTGTGTTTGTA 59.747 38.462 4.03 0.00 37.78 2.41
688 699 6.515002 CGTAGTTTGTGTGTTTGTATTGATCG 59.485 38.462 0.00 0.00 0.00 3.69
690 701 6.427150 AGTTTGTGTGTTTGTATTGATCGAC 58.573 36.000 0.00 0.00 0.00 4.20
701 712 3.330853 GATCGACGTCGCATGGGC 61.331 66.667 32.19 13.31 39.60 5.36
715 726 1.052124 ATGGGCTGCATGGATTTGGG 61.052 55.000 0.50 0.00 0.00 4.12
720 731 1.830477 GCTGCATGGATTTGGGGTTTA 59.170 47.619 0.00 0.00 0.00 2.01
724 1298 5.396213 GCTGCATGGATTTGGGGTTTATAAA 60.396 40.000 0.00 0.00 0.00 1.40
733 1307 7.737607 GGATTTGGGGTTTATAAAATAGGGGAT 59.262 37.037 0.00 0.00 0.00 3.85
737 1311 9.608718 TTGGGGTTTATAAAATAGGGGATATTG 57.391 33.333 0.00 0.00 34.21 1.90
744 1318 7.996098 ATAAAATAGGGGATATTGTTGTCCG 57.004 36.000 0.00 0.00 34.21 4.79
745 1319 4.367039 AATAGGGGATATTGTTGTCCGG 57.633 45.455 0.00 0.00 34.06 5.14
779 1353 0.106669 TCATGAGATCGACCCCTCGT 60.107 55.000 0.00 0.00 41.02 4.18
802 1376 1.764851 TTGCGGCAATTTTGAAGTCG 58.235 45.000 12.11 0.00 0.00 4.18
803 1377 0.039617 TGCGGCAATTTTGAAGTCGG 60.040 50.000 0.00 0.00 0.00 4.79
805 1379 1.198178 GCGGCAATTTTGAAGTCGGTA 59.802 47.619 0.00 0.00 0.00 4.02
812 1386 3.396260 TTTTGAAGTCGGTAGAGGTGG 57.604 47.619 0.00 0.00 0.00 4.61
849 1425 5.627499 TTTAACATCTCCAACACATGCTC 57.373 39.130 0.00 0.00 0.00 4.26
853 1429 2.189594 TCTCCAACACATGCTCTTGG 57.810 50.000 9.42 9.42 36.53 3.61
925 1505 5.358160 AGAAAAACTCTTTCAGTTGGTCCAG 59.642 40.000 0.00 0.00 45.32 3.86
1043 1818 0.817654 TCCTCGCGAGTCATGAACAT 59.182 50.000 32.41 0.00 0.00 2.71
1199 1974 1.636003 GTGATCCCCTCCAACTTCCTT 59.364 52.381 0.00 0.00 0.00 3.36
1449 2224 2.680352 GCCTGTCCCCTCTCGTCA 60.680 66.667 0.00 0.00 0.00 4.35
1623 2398 5.826208 TGGAACTCTCTTATATCAGCGTACA 59.174 40.000 0.00 0.00 0.00 2.90
1641 2416 1.079621 ACCCGTGGAGGATGGTACA 59.920 57.895 0.00 0.00 45.00 2.90
1718 2493 1.957186 GCCAAACAGCGTCACGGTA 60.957 57.895 0.00 0.00 35.27 4.02
1781 2556 2.201022 CGGGGTCTATGTCCTCCGG 61.201 68.421 0.00 0.00 36.16 5.14
1790 2565 2.918712 ATGTCCTCCGGATTGCTAAG 57.081 50.000 3.57 0.00 32.73 2.18
1813 2588 2.171448 AGAGTGGGCTTGATATGGACAC 59.829 50.000 0.00 0.00 0.00 3.67
1814 2589 1.212935 AGTGGGCTTGATATGGACACC 59.787 52.381 0.00 0.00 0.00 4.16
2054 2829 1.197721 CAAAATGGACGCCAGTCTGAC 59.802 52.381 0.00 0.00 46.29 3.51
2062 2837 0.318699 CGCCAGTCTGACGTTCTTGA 60.319 55.000 0.00 0.00 0.00 3.02
2259 3034 5.047731 GCTTACTCAAAGGCTGGATTTCTTT 60.048 40.000 0.00 0.00 35.58 2.52
2303 3078 4.808077 ATTGCATGAGAATAGAAGCACG 57.192 40.909 0.00 0.00 0.00 5.34
2372 3147 1.456287 GGAGGCACTGGACCTGTTT 59.544 57.895 0.40 0.00 41.55 2.83
2388 3163 6.351881 GGACCTGTTTAATCAGATGGTCAGTA 60.352 42.308 18.17 0.00 37.61 2.74
2551 3326 2.875672 GCATGGTTTCTGTACTCAGCCA 60.876 50.000 0.00 0.00 41.10 4.75
2625 3400 2.524306 CAAATGCAAAGGTCTGGGGTA 58.476 47.619 0.00 0.00 0.00 3.69
2776 3551 3.320626 GCAAATGGGAAGAAGCTGAAAC 58.679 45.455 0.00 0.00 0.00 2.78
2828 3603 2.638363 GGAGAAAGTTCCTGGGTGTAGT 59.362 50.000 0.00 0.00 34.27 2.73
2845 3620 2.604912 AGTTGGAATTGAGGGGTTCC 57.395 50.000 0.00 0.00 43.33 3.62
2860 3635 3.181464 GGGGTTCCATAGTCTGCTAGAAC 60.181 52.174 0.00 0.00 34.37 3.01
2876 3651 2.704572 AGAACTGGTTGCTGCAGATAC 58.295 47.619 20.43 13.84 0.00 2.24
2960 3735 1.571955 TAGACAAGAGCCTGGCATCA 58.428 50.000 22.65 0.00 0.00 3.07
3014 3789 7.571919 AGTGATGACATTCAATAGATCCAACT 58.428 34.615 0.00 0.00 0.00 3.16
3080 3855 7.004086 TGGATTTACATGGACCATCTTATTCC 58.996 38.462 3.21 9.30 0.00 3.01
3167 3942 7.229308 AGAGCATTGCTTCCATGATATTCTTA 58.771 34.615 13.35 0.00 39.88 2.10
3238 4013 8.851541 ATTTGCTATTTCAATGACACCAATTT 57.148 26.923 0.00 0.00 0.00 1.82
3253 4028 4.984161 CACCAATTTACCAAAGCAACAGAG 59.016 41.667 0.00 0.00 0.00 3.35
3986 4761 3.018856 TGGTTCACATGCTTGGATCATC 58.981 45.455 4.44 0.00 0.00 2.92
3996 4771 4.293494 TGCTTGGATCATCCTACTTCTCT 58.707 43.478 4.96 0.00 37.46 3.10
3998 4773 5.303078 TGCTTGGATCATCCTACTTCTCTAC 59.697 44.000 4.96 0.00 37.46 2.59
4019 4794 1.361204 TCCCAGCTCATGAAGTCCAA 58.639 50.000 0.00 0.00 0.00 3.53
4028 4803 5.472820 AGCTCATGAAGTCCAAAAGAAGAAG 59.527 40.000 0.00 0.00 0.00 2.85
4040 4815 0.250038 AGAAGAAGAGCACGCAAGCA 60.250 50.000 0.00 0.00 45.62 3.91
4052 4827 1.905354 GCAAGCAGCTCCCAGGTTT 60.905 57.895 0.00 0.00 41.15 3.27
4076 4851 6.860080 TGTTACCTAACTTATTCTGGACTCG 58.140 40.000 0.00 0.00 37.12 4.18
4176 4951 1.298859 CGCCCAAACGAGGAAAGGAG 61.299 60.000 0.00 0.00 34.06 3.69
4178 4953 1.340114 GCCCAAACGAGGAAAGGAGAT 60.340 52.381 0.00 0.00 0.00 2.75
4206 4981 1.003118 CCGGTGGGAACTTTGATGAGA 59.997 52.381 0.00 0.00 34.06 3.27
4207 4982 2.356125 CCGGTGGGAACTTTGATGAGAT 60.356 50.000 0.00 0.00 34.06 2.75
4228 5003 2.694628 TGAAAACAACAGCCTGCAATCT 59.305 40.909 0.00 0.00 0.00 2.40
4229 5004 3.132646 TGAAAACAACAGCCTGCAATCTT 59.867 39.130 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.370166 CCTCCTTCAATGTCTTAGTGTTCTTC 59.630 42.308 0.00 0.00 0.00 2.87
1 2 6.234177 CCTCCTTCAATGTCTTAGTGTTCTT 58.766 40.000 0.00 0.00 0.00 2.52
2 3 5.280215 CCCTCCTTCAATGTCTTAGTGTTCT 60.280 44.000 0.00 0.00 0.00 3.01
3 4 4.938226 CCCTCCTTCAATGTCTTAGTGTTC 59.062 45.833 0.00 0.00 0.00 3.18
4 5 4.807643 GCCCTCCTTCAATGTCTTAGTGTT 60.808 45.833 0.00 0.00 0.00 3.32
5 6 3.307762 GCCCTCCTTCAATGTCTTAGTGT 60.308 47.826 0.00 0.00 0.00 3.55
6 7 3.054802 AGCCCTCCTTCAATGTCTTAGTG 60.055 47.826 0.00 0.00 0.00 2.74
7 8 3.185455 AGCCCTCCTTCAATGTCTTAGT 58.815 45.455 0.00 0.00 0.00 2.24
8 9 3.739519 CGAGCCCTCCTTCAATGTCTTAG 60.740 52.174 0.00 0.00 0.00 2.18
9 10 2.168521 CGAGCCCTCCTTCAATGTCTTA 59.831 50.000 0.00 0.00 0.00 2.10
10 11 1.065854 CGAGCCCTCCTTCAATGTCTT 60.066 52.381 0.00 0.00 0.00 3.01
11 12 0.539051 CGAGCCCTCCTTCAATGTCT 59.461 55.000 0.00 0.00 0.00 3.41
12 13 0.537188 TCGAGCCCTCCTTCAATGTC 59.463 55.000 0.00 0.00 0.00 3.06
13 14 0.539051 CTCGAGCCCTCCTTCAATGT 59.461 55.000 0.00 0.00 0.00 2.71
14 15 0.179062 CCTCGAGCCCTCCTTCAATG 60.179 60.000 6.99 0.00 0.00 2.82
15 16 0.618968 ACCTCGAGCCCTCCTTCAAT 60.619 55.000 6.99 0.00 0.00 2.57
16 17 1.229209 ACCTCGAGCCCTCCTTCAA 60.229 57.895 6.99 0.00 0.00 2.69
17 18 1.984570 CACCTCGAGCCCTCCTTCA 60.985 63.158 6.99 0.00 0.00 3.02
18 19 1.950973 GACACCTCGAGCCCTCCTTC 61.951 65.000 6.99 0.00 0.00 3.46
19 20 1.985116 GACACCTCGAGCCCTCCTT 60.985 63.158 6.99 0.00 0.00 3.36
20 21 2.363147 GACACCTCGAGCCCTCCT 60.363 66.667 6.99 0.00 0.00 3.69
21 22 3.827898 CGACACCTCGAGCCCTCC 61.828 72.222 6.99 0.00 43.06 4.30
22 23 2.750637 TCGACACCTCGAGCCCTC 60.751 66.667 6.99 0.00 44.14 4.30
29 30 1.009389 GTCAAGGCTTCGACACCTCG 61.009 60.000 18.61 0.00 41.65 4.63
30 31 1.009389 CGTCAAGGCTTCGACACCTC 61.009 60.000 21.36 0.00 34.31 3.85
31 32 1.006102 CGTCAAGGCTTCGACACCT 60.006 57.895 21.36 0.00 38.14 4.00
32 33 2.027625 CCGTCAAGGCTTCGACACC 61.028 63.158 21.36 0.00 32.24 4.16
33 34 1.006571 TCCGTCAAGGCTTCGACAC 60.007 57.895 21.36 7.51 40.77 3.67
34 35 1.006571 GTCCGTCAAGGCTTCGACA 60.007 57.895 21.36 7.67 40.77 4.35
35 36 0.319641 AAGTCCGTCAAGGCTTCGAC 60.320 55.000 9.63 12.98 40.77 4.20
36 37 0.038526 GAAGTCCGTCAAGGCTTCGA 60.039 55.000 9.63 3.01 40.55 3.71
40 41 2.096248 CTCTAGAAGTCCGTCAAGGCT 58.904 52.381 0.00 0.00 40.77 4.58
73 74 1.296056 CGTTGTTGGGGGACGACATC 61.296 60.000 0.00 0.00 42.93 3.06
75 76 2.109387 CGTTGTTGGGGGACGACA 59.891 61.111 0.00 0.00 41.76 4.35
79 80 1.895231 GGTGTCGTTGTTGGGGGAC 60.895 63.158 0.00 0.00 0.00 4.46
131 132 2.162681 AGTACCTTCACCAGCATTTGC 58.837 47.619 0.00 0.00 42.49 3.68
132 133 3.191371 GGAAGTACCTTCACCAGCATTTG 59.809 47.826 6.34 0.00 41.77 2.32
133 134 3.421844 GGAAGTACCTTCACCAGCATTT 58.578 45.455 6.34 0.00 41.77 2.32
134 135 2.290960 GGGAAGTACCTTCACCAGCATT 60.291 50.000 6.34 0.00 41.77 3.56
135 136 1.282157 GGGAAGTACCTTCACCAGCAT 59.718 52.381 6.34 0.00 41.77 3.79
136 137 0.690762 GGGAAGTACCTTCACCAGCA 59.309 55.000 6.34 0.00 41.77 4.41
137 138 0.984995 AGGGAAGTACCTTCACCAGC 59.015 55.000 2.70 0.00 44.23 4.85
147 148 4.836736 TGGGCATACTATACAGGGAAGTAC 59.163 45.833 0.00 0.00 0.00 2.73
150 151 4.974645 TTGGGCATACTATACAGGGAAG 57.025 45.455 0.00 0.00 0.00 3.46
168 178 7.757526 TCAATAACAAAAGGACATCGTATTGG 58.242 34.615 0.00 0.00 0.00 3.16
171 181 8.561738 AGTTCAATAACAAAAGGACATCGTAT 57.438 30.769 0.00 0.00 38.12 3.06
199 210 9.122613 CATACTACAAATGATAGATGACAGACG 57.877 37.037 0.00 0.00 0.00 4.18
245 256 9.979578 AATGAAGAGAGTATGATATGTCAGTTC 57.020 33.333 0.00 0.00 37.87 3.01
273 284 6.813152 CCCAAAAAGATGCACCTTACATAAAG 59.187 38.462 0.00 0.00 34.73 1.85
274 285 6.696411 CCCAAAAAGATGCACCTTACATAAA 58.304 36.000 0.00 0.00 0.00 1.40
275 286 5.337169 GCCCAAAAAGATGCACCTTACATAA 60.337 40.000 0.00 0.00 0.00 1.90
276 287 4.159506 GCCCAAAAAGATGCACCTTACATA 59.840 41.667 0.00 0.00 0.00 2.29
277 288 3.055891 GCCCAAAAAGATGCACCTTACAT 60.056 43.478 0.00 0.00 0.00 2.29
278 289 2.298729 GCCCAAAAAGATGCACCTTACA 59.701 45.455 0.00 0.00 0.00 2.41
279 290 2.671070 CGCCCAAAAAGATGCACCTTAC 60.671 50.000 0.00 0.00 0.00 2.34
280 291 1.543802 CGCCCAAAAAGATGCACCTTA 59.456 47.619 0.00 0.00 0.00 2.69
281 292 0.318120 CGCCCAAAAAGATGCACCTT 59.682 50.000 0.00 0.00 0.00 3.50
282 293 1.966762 CGCCCAAAAAGATGCACCT 59.033 52.632 0.00 0.00 0.00 4.00
283 294 1.737735 GCGCCCAAAAAGATGCACC 60.738 57.895 0.00 0.00 0.00 5.01
284 295 0.599728 TTGCGCCCAAAAAGATGCAC 60.600 50.000 4.18 0.00 31.16 4.57
285 296 0.321021 ATTGCGCCCAAAAAGATGCA 59.679 45.000 4.18 0.00 34.05 3.96
286 297 0.722848 CATTGCGCCCAAAAAGATGC 59.277 50.000 4.18 0.00 34.05 3.91
287 298 1.994779 GTCATTGCGCCCAAAAAGATG 59.005 47.619 4.18 0.00 34.05 2.90
288 299 1.895131 AGTCATTGCGCCCAAAAAGAT 59.105 42.857 4.18 0.00 34.05 2.40
289 300 1.327303 AGTCATTGCGCCCAAAAAGA 58.673 45.000 4.18 0.00 34.05 2.52
290 301 3.244976 CTTAGTCATTGCGCCCAAAAAG 58.755 45.455 4.18 0.00 34.05 2.27
291 302 2.029470 CCTTAGTCATTGCGCCCAAAAA 60.029 45.455 4.18 0.00 34.05 1.94
292 303 1.543802 CCTTAGTCATTGCGCCCAAAA 59.456 47.619 4.18 0.00 34.05 2.44
293 304 1.173043 CCTTAGTCATTGCGCCCAAA 58.827 50.000 4.18 0.00 34.05 3.28
294 305 1.312371 GCCTTAGTCATTGCGCCCAA 61.312 55.000 4.18 0.00 35.01 4.12
295 306 1.748879 GCCTTAGTCATTGCGCCCA 60.749 57.895 4.18 0.00 0.00 5.36
296 307 1.748879 TGCCTTAGTCATTGCGCCC 60.749 57.895 4.18 0.00 0.00 6.13
297 308 1.305219 TGTGCCTTAGTCATTGCGCC 61.305 55.000 4.18 0.00 33.45 6.53
298 309 0.097674 CTGTGCCTTAGTCATTGCGC 59.902 55.000 0.00 0.00 34.92 6.09
299 310 1.725641 TCTGTGCCTTAGTCATTGCG 58.274 50.000 0.00 0.00 0.00 4.85
300 311 4.156556 TCAAATCTGTGCCTTAGTCATTGC 59.843 41.667 0.00 0.00 0.00 3.56
301 312 5.885230 TCAAATCTGTGCCTTAGTCATTG 57.115 39.130 0.00 0.00 0.00 2.82
302 313 6.240894 TCTTCAAATCTGTGCCTTAGTCATT 58.759 36.000 0.00 0.00 0.00 2.57
303 314 5.809001 TCTTCAAATCTGTGCCTTAGTCAT 58.191 37.500 0.00 0.00 0.00 3.06
304 315 5.227569 TCTTCAAATCTGTGCCTTAGTCA 57.772 39.130 0.00 0.00 0.00 3.41
305 316 7.849804 TTATCTTCAAATCTGTGCCTTAGTC 57.150 36.000 0.00 0.00 0.00 2.59
306 317 8.814038 AATTATCTTCAAATCTGTGCCTTAGT 57.186 30.769 0.00 0.00 0.00 2.24
309 320 7.756722 CGAAAATTATCTTCAAATCTGTGCCTT 59.243 33.333 0.00 0.00 0.00 4.35
310 321 7.121168 TCGAAAATTATCTTCAAATCTGTGCCT 59.879 33.333 0.00 0.00 0.00 4.75
311 322 7.218963 GTCGAAAATTATCTTCAAATCTGTGCC 59.781 37.037 0.00 0.00 0.00 5.01
312 323 7.750458 TGTCGAAAATTATCTTCAAATCTGTGC 59.250 33.333 0.00 0.00 0.00 4.57
313 324 9.611284 TTGTCGAAAATTATCTTCAAATCTGTG 57.389 29.630 0.00 0.00 0.00 3.66
334 345 9.878599 CCTAATTAGCTAATGGTATTTTTGTCG 57.121 33.333 19.53 0.00 0.00 4.35
354 365 9.780186 GATAATCAACCTGCTAACTACCTAATT 57.220 33.333 0.00 0.00 0.00 1.40
355 366 8.088981 CGATAATCAACCTGCTAACTACCTAAT 58.911 37.037 0.00 0.00 0.00 1.73
356 367 7.286087 TCGATAATCAACCTGCTAACTACCTAA 59.714 37.037 0.00 0.00 0.00 2.69
357 368 6.774170 TCGATAATCAACCTGCTAACTACCTA 59.226 38.462 0.00 0.00 0.00 3.08
358 369 5.597182 TCGATAATCAACCTGCTAACTACCT 59.403 40.000 0.00 0.00 0.00 3.08
359 370 5.690857 GTCGATAATCAACCTGCTAACTACC 59.309 44.000 0.00 0.00 0.00 3.18
360 371 6.270815 TGTCGATAATCAACCTGCTAACTAC 58.729 40.000 0.00 0.00 0.00 2.73
361 372 6.459670 TGTCGATAATCAACCTGCTAACTA 57.540 37.500 0.00 0.00 0.00 2.24
362 373 5.339008 TGTCGATAATCAACCTGCTAACT 57.661 39.130 0.00 0.00 0.00 2.24
363 374 4.025647 GCTGTCGATAATCAACCTGCTAAC 60.026 45.833 0.00 0.00 0.00 2.34
364 375 4.119862 GCTGTCGATAATCAACCTGCTAA 58.880 43.478 0.00 0.00 0.00 3.09
365 376 3.384789 AGCTGTCGATAATCAACCTGCTA 59.615 43.478 0.00 0.00 0.00 3.49
366 377 2.169352 AGCTGTCGATAATCAACCTGCT 59.831 45.455 0.00 0.00 0.00 4.24
367 378 2.555199 AGCTGTCGATAATCAACCTGC 58.445 47.619 0.00 0.00 0.00 4.85
368 379 6.851222 ATTTAGCTGTCGATAATCAACCTG 57.149 37.500 0.00 0.00 0.00 4.00
369 380 8.204836 AGTTATTTAGCTGTCGATAATCAACCT 58.795 33.333 0.00 0.00 0.00 3.50
370 381 8.366671 AGTTATTTAGCTGTCGATAATCAACC 57.633 34.615 0.00 0.00 0.00 3.77
372 383 9.193133 GCTAGTTATTTAGCTGTCGATAATCAA 57.807 33.333 0.00 0.00 42.18 2.57
373 384 7.537649 CGCTAGTTATTTAGCTGTCGATAATCA 59.462 37.037 0.00 0.00 43.05 2.57
374 385 7.008447 CCGCTAGTTATTTAGCTGTCGATAATC 59.992 40.741 0.00 0.00 43.05 1.75
375 386 6.807230 CCGCTAGTTATTTAGCTGTCGATAAT 59.193 38.462 0.00 0.00 43.05 1.28
376 387 6.147581 CCGCTAGTTATTTAGCTGTCGATAA 58.852 40.000 0.00 0.00 43.05 1.75
377 388 5.696822 CCGCTAGTTATTTAGCTGTCGATA 58.303 41.667 0.00 0.00 43.05 2.92
378 389 4.547532 CCGCTAGTTATTTAGCTGTCGAT 58.452 43.478 0.00 0.00 43.05 3.59
379 390 3.794475 GCCGCTAGTTATTTAGCTGTCGA 60.794 47.826 0.00 0.00 43.05 4.20
380 391 2.471743 GCCGCTAGTTATTTAGCTGTCG 59.528 50.000 0.00 0.00 43.05 4.35
381 392 2.801111 GGCCGCTAGTTATTTAGCTGTC 59.199 50.000 0.00 0.00 43.05 3.51
382 393 2.169769 TGGCCGCTAGTTATTTAGCTGT 59.830 45.455 0.00 0.00 43.05 4.40
383 394 2.833794 TGGCCGCTAGTTATTTAGCTG 58.166 47.619 0.00 0.00 43.05 4.24
384 395 3.771577 ATGGCCGCTAGTTATTTAGCT 57.228 42.857 0.00 0.00 43.05 3.32
385 396 5.934935 TTAATGGCCGCTAGTTATTTAGC 57.065 39.130 0.00 0.00 42.05 3.09
386 397 7.360361 CCTTTTAATGGCCGCTAGTTATTTAG 58.640 38.462 0.00 0.00 0.00 1.85
387 398 6.238814 GCCTTTTAATGGCCGCTAGTTATTTA 60.239 38.462 10.35 0.00 44.32 1.40
388 399 5.451381 GCCTTTTAATGGCCGCTAGTTATTT 60.451 40.000 10.35 0.00 44.32 1.40
389 400 4.037565 GCCTTTTAATGGCCGCTAGTTATT 59.962 41.667 10.35 0.00 44.32 1.40
390 401 3.568430 GCCTTTTAATGGCCGCTAGTTAT 59.432 43.478 10.35 0.00 44.32 1.89
391 402 2.946990 GCCTTTTAATGGCCGCTAGTTA 59.053 45.455 10.35 0.00 44.32 2.24
392 403 1.749063 GCCTTTTAATGGCCGCTAGTT 59.251 47.619 10.35 0.00 44.32 2.24
393 404 1.389555 GCCTTTTAATGGCCGCTAGT 58.610 50.000 10.35 0.00 44.32 2.57
401 412 7.294676 GCAAGATTTAGTTGCCTTTTAATGG 57.705 36.000 0.00 0.00 43.80 3.16
412 423 5.556355 TCTGATGCAGCAAGATTTAGTTG 57.444 39.130 5.96 0.00 0.00 3.16
413 424 6.770746 ATTCTGATGCAGCAAGATTTAGTT 57.229 33.333 5.96 0.00 0.00 2.24
414 425 7.870509 TTATTCTGATGCAGCAAGATTTAGT 57.129 32.000 5.96 0.00 0.00 2.24
415 426 9.745880 ATTTTATTCTGATGCAGCAAGATTTAG 57.254 29.630 5.96 0.00 0.00 1.85
416 427 9.740239 GATTTTATTCTGATGCAGCAAGATTTA 57.260 29.630 5.96 0.00 0.00 1.40
417 428 7.709613 GGATTTTATTCTGATGCAGCAAGATTT 59.290 33.333 5.96 0.30 0.00 2.17
418 429 7.208080 GGATTTTATTCTGATGCAGCAAGATT 58.792 34.615 5.96 5.26 0.00 2.40
419 430 6.514541 CGGATTTTATTCTGATGCAGCAAGAT 60.515 38.462 5.96 5.53 0.00 2.40
420 431 5.220912 CGGATTTTATTCTGATGCAGCAAGA 60.221 40.000 5.96 2.90 0.00 3.02
421 432 4.974275 CGGATTTTATTCTGATGCAGCAAG 59.026 41.667 5.96 0.18 0.00 4.01
422 433 4.202040 CCGGATTTTATTCTGATGCAGCAA 60.202 41.667 5.96 0.00 0.00 3.91
423 434 3.316029 CCGGATTTTATTCTGATGCAGCA 59.684 43.478 3.82 3.82 0.00 4.41
424 435 3.316308 ACCGGATTTTATTCTGATGCAGC 59.684 43.478 9.46 0.00 0.00 5.25
425 436 4.261322 CCACCGGATTTTATTCTGATGCAG 60.261 45.833 9.46 0.00 0.00 4.41
426 437 3.631686 CCACCGGATTTTATTCTGATGCA 59.368 43.478 9.46 0.00 0.00 3.96
427 438 3.004734 CCCACCGGATTTTATTCTGATGC 59.995 47.826 9.46 0.00 0.00 3.91
428 439 4.460263 TCCCACCGGATTTTATTCTGATG 58.540 43.478 9.46 0.00 31.13 3.07
429 440 4.788925 TCCCACCGGATTTTATTCTGAT 57.211 40.909 9.46 0.00 31.13 2.90
441 452 2.041922 CTCTCCCATCCCACCGGA 60.042 66.667 9.46 0.00 44.33 5.14
442 453 2.041922 TCTCTCCCATCCCACCGG 60.042 66.667 0.00 0.00 0.00 5.28
443 454 0.687757 TTCTCTCTCCCATCCCACCG 60.688 60.000 0.00 0.00 0.00 4.94
444 455 1.584724 TTTCTCTCTCCCATCCCACC 58.415 55.000 0.00 0.00 0.00 4.61
445 456 2.507471 ACATTTCTCTCTCCCATCCCAC 59.493 50.000 0.00 0.00 0.00 4.61
446 457 2.507058 CACATTTCTCTCTCCCATCCCA 59.493 50.000 0.00 0.00 0.00 4.37
447 458 2.774234 TCACATTTCTCTCTCCCATCCC 59.226 50.000 0.00 0.00 0.00 3.85
448 459 3.454082 ACTCACATTTCTCTCTCCCATCC 59.546 47.826 0.00 0.00 0.00 3.51
449 460 4.751767 ACTCACATTTCTCTCTCCCATC 57.248 45.455 0.00 0.00 0.00 3.51
450 461 5.026121 TGTACTCACATTTCTCTCTCCCAT 58.974 41.667 0.00 0.00 0.00 4.00
451 462 4.416516 TGTACTCACATTTCTCTCTCCCA 58.583 43.478 0.00 0.00 0.00 4.37
452 463 4.707448 TCTGTACTCACATTTCTCTCTCCC 59.293 45.833 0.00 0.00 33.14 4.30
453 464 5.906113 TCTGTACTCACATTTCTCTCTCC 57.094 43.478 0.00 0.00 33.14 3.71
454 465 8.770438 ATTTTCTGTACTCACATTTCTCTCTC 57.230 34.615 0.00 0.00 33.14 3.20
455 466 8.370940 TGATTTTCTGTACTCACATTTCTCTCT 58.629 33.333 0.00 0.00 33.14 3.10
456 467 8.539770 TGATTTTCTGTACTCACATTTCTCTC 57.460 34.615 0.00 0.00 33.14 3.20
457 468 8.370940 TCTGATTTTCTGTACTCACATTTCTCT 58.629 33.333 0.00 0.00 33.14 3.10
458 469 8.539770 TCTGATTTTCTGTACTCACATTTCTC 57.460 34.615 0.00 0.00 33.14 2.87
459 470 8.370940 TCTCTGATTTTCTGTACTCACATTTCT 58.629 33.333 0.00 0.00 33.14 2.52
460 471 8.539770 TCTCTGATTTTCTGTACTCACATTTC 57.460 34.615 0.00 0.00 33.14 2.17
461 472 8.370940 TCTCTCTGATTTTCTGTACTCACATTT 58.629 33.333 0.00 0.00 33.14 2.32
462 473 7.901029 TCTCTCTGATTTTCTGTACTCACATT 58.099 34.615 0.00 0.00 33.14 2.71
463 474 7.473735 TCTCTCTGATTTTCTGTACTCACAT 57.526 36.000 0.00 0.00 33.14 3.21
464 475 6.901081 TCTCTCTGATTTTCTGTACTCACA 57.099 37.500 0.00 0.00 0.00 3.58
493 504 9.510062 TCCCAATAGGAAGGTAGTAAAAATAGA 57.490 33.333 0.00 0.00 43.78 1.98
509 520 6.549433 AAGTAACGTGTATTCCCAATAGGA 57.451 37.500 0.00 0.00 45.68 2.94
510 521 7.619964 AAAAGTAACGTGTATTCCCAATAGG 57.380 36.000 0.00 0.00 0.00 2.57
513 524 9.457436 AGATAAAAAGTAACGTGTATTCCCAAT 57.543 29.630 0.00 0.00 0.00 3.16
514 525 8.851541 AGATAAAAAGTAACGTGTATTCCCAA 57.148 30.769 0.00 0.00 0.00 4.12
515 526 9.941325 TTAGATAAAAAGTAACGTGTATTCCCA 57.059 29.630 0.00 0.00 0.00 4.37
522 533 8.780249 ACATGCTTTAGATAAAAAGTAACGTGT 58.220 29.630 0.00 0.00 38.48 4.49
532 543 9.420118 ACCATCCATTACATGCTTTAGATAAAA 57.580 29.630 0.00 0.00 0.00 1.52
533 544 8.849168 CACCATCCATTACATGCTTTAGATAAA 58.151 33.333 0.00 0.00 0.00 1.40
534 545 7.448161 CCACCATCCATTACATGCTTTAGATAA 59.552 37.037 0.00 0.00 0.00 1.75
535 546 6.942005 CCACCATCCATTACATGCTTTAGATA 59.058 38.462 0.00 0.00 0.00 1.98
536 547 5.771666 CCACCATCCATTACATGCTTTAGAT 59.228 40.000 0.00 0.00 0.00 1.98
537 548 5.104151 TCCACCATCCATTACATGCTTTAGA 60.104 40.000 0.00 0.00 0.00 2.10
538 549 5.132502 TCCACCATCCATTACATGCTTTAG 58.867 41.667 0.00 0.00 0.00 1.85
539 550 5.122707 TCCACCATCCATTACATGCTTTA 57.877 39.130 0.00 0.00 0.00 1.85
540 551 3.979911 TCCACCATCCATTACATGCTTT 58.020 40.909 0.00 0.00 0.00 3.51
541 552 3.668141 TCCACCATCCATTACATGCTT 57.332 42.857 0.00 0.00 0.00 3.91
542 553 3.559069 CTTCCACCATCCATTACATGCT 58.441 45.455 0.00 0.00 0.00 3.79
543 554 2.624838 CCTTCCACCATCCATTACATGC 59.375 50.000 0.00 0.00 0.00 4.06
544 555 3.225104 CCCTTCCACCATCCATTACATG 58.775 50.000 0.00 0.00 0.00 3.21
545 556 2.424812 GCCCTTCCACCATCCATTACAT 60.425 50.000 0.00 0.00 0.00 2.29
546 557 1.064017 GCCCTTCCACCATCCATTACA 60.064 52.381 0.00 0.00 0.00 2.41
547 558 1.064017 TGCCCTTCCACCATCCATTAC 60.064 52.381 0.00 0.00 0.00 1.89
548 559 1.064017 GTGCCCTTCCACCATCCATTA 60.064 52.381 0.00 0.00 0.00 1.90
549 560 0.324645 GTGCCCTTCCACCATCCATT 60.325 55.000 0.00 0.00 0.00 3.16
550 561 1.307647 GTGCCCTTCCACCATCCAT 59.692 57.895 0.00 0.00 0.00 3.41
551 562 2.763215 GTGCCCTTCCACCATCCA 59.237 61.111 0.00 0.00 0.00 3.41
552 563 2.438434 CGTGCCCTTCCACCATCC 60.438 66.667 0.00 0.00 32.10 3.51
553 564 3.134127 GCGTGCCCTTCCACCATC 61.134 66.667 0.00 0.00 32.10 3.51
554 565 3.286694 ATGCGTGCCCTTCCACCAT 62.287 57.895 0.00 0.00 32.10 3.55
555 566 3.965258 ATGCGTGCCCTTCCACCA 61.965 61.111 0.00 0.00 32.10 4.17
556 567 3.443045 CATGCGTGCCCTTCCACC 61.443 66.667 0.00 0.00 32.10 4.61
557 568 1.523154 TTTCATGCGTGCCCTTCCAC 61.523 55.000 0.00 0.00 0.00 4.02
558 569 0.825425 TTTTCATGCGTGCCCTTCCA 60.825 50.000 0.00 0.00 0.00 3.53
559 570 0.316841 TTTTTCATGCGTGCCCTTCC 59.683 50.000 0.00 0.00 0.00 3.46
560 571 2.262211 GATTTTTCATGCGTGCCCTTC 58.738 47.619 0.00 0.00 0.00 3.46
561 572 1.402720 CGATTTTTCATGCGTGCCCTT 60.403 47.619 0.00 0.00 0.00 3.95
562 573 0.171007 CGATTTTTCATGCGTGCCCT 59.829 50.000 0.00 0.00 0.00 5.19
563 574 1.413008 GCGATTTTTCATGCGTGCCC 61.413 55.000 0.00 0.00 0.00 5.36
564 575 1.732474 CGCGATTTTTCATGCGTGCC 61.732 55.000 0.00 0.00 45.12 5.01
565 576 1.620225 CGCGATTTTTCATGCGTGC 59.380 52.632 0.00 0.00 45.12 5.34
569 580 2.542766 TTCCTCGCGATTTTTCATGC 57.457 45.000 10.36 0.00 0.00 4.06
570 581 4.722194 TCTTTTCCTCGCGATTTTTCATG 58.278 39.130 10.36 0.00 0.00 3.07
571 582 4.695455 TCTCTTTTCCTCGCGATTTTTCAT 59.305 37.500 10.36 0.00 0.00 2.57
572 583 4.062293 TCTCTTTTCCTCGCGATTTTTCA 58.938 39.130 10.36 0.00 0.00 2.69
573 584 4.663636 TCTCTTTTCCTCGCGATTTTTC 57.336 40.909 10.36 0.00 0.00 2.29
574 585 5.432885 TTTCTCTTTTCCTCGCGATTTTT 57.567 34.783 10.36 0.00 0.00 1.94
575 586 5.629079 ATTTCTCTTTTCCTCGCGATTTT 57.371 34.783 10.36 0.00 0.00 1.82
576 587 5.642063 TGTATTTCTCTTTTCCTCGCGATTT 59.358 36.000 10.36 0.00 0.00 2.17
577 588 5.063564 GTGTATTTCTCTTTTCCTCGCGATT 59.936 40.000 10.36 0.00 0.00 3.34
578 589 4.567159 GTGTATTTCTCTTTTCCTCGCGAT 59.433 41.667 10.36 0.00 0.00 4.58
579 590 3.924686 GTGTATTTCTCTTTTCCTCGCGA 59.075 43.478 9.26 9.26 0.00 5.87
580 591 3.062234 GGTGTATTTCTCTTTTCCTCGCG 59.938 47.826 0.00 0.00 0.00 5.87
581 592 4.254492 AGGTGTATTTCTCTTTTCCTCGC 58.746 43.478 0.00 0.00 0.00 5.03
582 593 6.872020 TGTAAGGTGTATTTCTCTTTTCCTCG 59.128 38.462 0.00 0.00 0.00 4.63
583 594 8.794335 ATGTAAGGTGTATTTCTCTTTTCCTC 57.206 34.615 0.00 0.00 0.00 3.71
584 595 9.014297 CAATGTAAGGTGTATTTCTCTTTTCCT 57.986 33.333 0.00 0.00 0.00 3.36
585 596 8.793592 ACAATGTAAGGTGTATTTCTCTTTTCC 58.206 33.333 0.00 0.00 0.00 3.13
586 597 9.612620 CACAATGTAAGGTGTATTTCTCTTTTC 57.387 33.333 0.00 0.00 0.00 2.29
587 598 9.349713 TCACAATGTAAGGTGTATTTCTCTTTT 57.650 29.630 0.00 0.00 36.43 2.27
588 599 8.918202 TCACAATGTAAGGTGTATTTCTCTTT 57.082 30.769 0.00 0.00 36.43 2.52
589 600 8.918202 TTCACAATGTAAGGTGTATTTCTCTT 57.082 30.769 0.00 0.00 36.43 2.85
590 601 9.520515 AATTCACAATGTAAGGTGTATTTCTCT 57.479 29.630 0.00 0.00 33.14 3.10
632 643 9.760077 CACTCCGTTTCTTTATATAAGGTGTAT 57.240 33.333 4.68 0.00 0.00 2.29
633 644 8.970020 TCACTCCGTTTCTTTATATAAGGTGTA 58.030 33.333 4.68 0.00 0.00 2.90
634 645 7.844009 TCACTCCGTTTCTTTATATAAGGTGT 58.156 34.615 4.68 2.33 0.00 4.16
635 646 7.980099 ACTCACTCCGTTTCTTTATATAAGGTG 59.020 37.037 4.68 1.80 0.00 4.00
636 647 8.075761 ACTCACTCCGTTTCTTTATATAAGGT 57.924 34.615 4.68 0.00 0.00 3.50
637 648 9.460906 GTACTCACTCCGTTTCTTTATATAAGG 57.539 37.037 0.00 0.00 0.00 2.69
638 649 9.167239 CGTACTCACTCCGTTTCTTTATATAAG 57.833 37.037 0.00 0.00 0.00 1.73
639 650 8.677300 ACGTACTCACTCCGTTTCTTTATATAA 58.323 33.333 0.00 0.00 0.00 0.98
640 651 8.213518 ACGTACTCACTCCGTTTCTTTATATA 57.786 34.615 0.00 0.00 0.00 0.86
641 652 7.093322 ACGTACTCACTCCGTTTCTTTATAT 57.907 36.000 0.00 0.00 0.00 0.86
642 653 6.500684 ACGTACTCACTCCGTTTCTTTATA 57.499 37.500 0.00 0.00 0.00 0.98
643 654 5.382618 ACGTACTCACTCCGTTTCTTTAT 57.617 39.130 0.00 0.00 0.00 1.40
644 655 4.836125 ACGTACTCACTCCGTTTCTTTA 57.164 40.909 0.00 0.00 0.00 1.85
645 656 3.722728 ACGTACTCACTCCGTTTCTTT 57.277 42.857 0.00 0.00 0.00 2.52
646 657 3.817647 ACTACGTACTCACTCCGTTTCTT 59.182 43.478 0.00 0.00 36.12 2.52
647 658 3.406764 ACTACGTACTCACTCCGTTTCT 58.593 45.455 0.00 0.00 36.12 2.52
648 659 3.820777 ACTACGTACTCACTCCGTTTC 57.179 47.619 0.00 0.00 36.12 2.78
649 660 4.202050 ACAAACTACGTACTCACTCCGTTT 60.202 41.667 0.00 0.00 36.12 3.60
650 661 3.316308 ACAAACTACGTACTCACTCCGTT 59.684 43.478 0.00 0.00 36.12 4.44
651 662 2.880890 ACAAACTACGTACTCACTCCGT 59.119 45.455 0.00 0.00 38.53 4.69
652 663 3.231965 CACAAACTACGTACTCACTCCG 58.768 50.000 0.00 0.00 0.00 4.63
653 664 3.979495 CACACAAACTACGTACTCACTCC 59.021 47.826 0.00 0.00 0.00 3.85
654 665 4.604976 ACACACAAACTACGTACTCACTC 58.395 43.478 0.00 0.00 0.00 3.51
655 666 4.644103 ACACACAAACTACGTACTCACT 57.356 40.909 0.00 0.00 0.00 3.41
656 667 5.062558 ACAAACACACAAACTACGTACTCAC 59.937 40.000 0.00 0.00 0.00 3.51
657 668 5.170021 ACAAACACACAAACTACGTACTCA 58.830 37.500 0.00 0.00 0.00 3.41
658 669 5.707411 ACAAACACACAAACTACGTACTC 57.293 39.130 0.00 0.00 0.00 2.59
659 670 7.492020 TCAATACAAACACACAAACTACGTACT 59.508 33.333 0.00 0.00 0.00 2.73
660 671 7.620215 TCAATACAAACACACAAACTACGTAC 58.380 34.615 0.00 0.00 0.00 3.67
661 672 7.767745 TCAATACAAACACACAAACTACGTA 57.232 32.000 0.00 0.00 0.00 3.57
662 673 6.665474 TCAATACAAACACACAAACTACGT 57.335 33.333 0.00 0.00 0.00 3.57
663 674 6.515002 CGATCAATACAAACACACAAACTACG 59.485 38.462 0.00 0.00 0.00 3.51
681 692 0.875908 CCCATGCGACGTCGATCAAT 60.876 55.000 39.74 22.88 43.02 2.57
701 712 5.867903 TTATAAACCCCAAATCCATGCAG 57.132 39.130 0.00 0.00 0.00 4.41
720 731 6.946009 CCGGACAACAATATCCCCTATTTTAT 59.054 38.462 0.00 0.00 0.00 1.40
724 1298 3.977999 TCCGGACAACAATATCCCCTATT 59.022 43.478 0.00 0.00 0.00 1.73
744 1318 5.022122 TCTCATGATATCATCTGTCCCTCC 58.978 45.833 15.49 0.00 33.61 4.30
745 1319 6.459985 CGATCTCATGATATCATCTGTCCCTC 60.460 46.154 15.49 5.84 33.61 4.30
753 1327 4.648762 AGGGGTCGATCTCATGATATCATC 59.351 45.833 15.49 4.31 33.61 2.92
754 1328 4.618635 AGGGGTCGATCTCATGATATCAT 58.381 43.478 18.16 12.62 36.96 2.45
755 1329 4.019858 GAGGGGTCGATCTCATGATATCA 58.980 47.826 18.16 8.10 32.19 2.15
756 1330 3.066064 CGAGGGGTCGATCTCATGATATC 59.934 52.174 10.33 10.33 32.19 1.63
757 1331 3.020274 CGAGGGGTCGATCTCATGATAT 58.980 50.000 0.00 0.00 32.19 1.63
758 1332 2.224793 ACGAGGGGTCGATCTCATGATA 60.225 50.000 0.00 0.00 36.85 2.15
759 1333 1.252175 CGAGGGGTCGATCTCATGAT 58.748 55.000 0.00 0.00 35.26 2.45
760 1334 0.106669 ACGAGGGGTCGATCTCATGA 60.107 55.000 0.00 0.00 36.85 3.07
761 1335 0.747255 AACGAGGGGTCGATCTCATG 59.253 55.000 0.00 0.00 36.85 3.07
779 1353 3.265791 ACTTCAAAATTGCCGCAAACAA 58.734 36.364 10.42 0.00 0.00 2.83
802 1376 1.053424 TGTGTTGGACCACCTCTACC 58.947 55.000 0.00 0.00 37.04 3.18
803 1377 3.418684 AATGTGTTGGACCACCTCTAC 57.581 47.619 0.00 0.00 37.04 2.59
805 1379 3.312736 AAAATGTGTTGGACCACCTCT 57.687 42.857 0.00 0.00 37.04 3.69
830 1406 3.430042 AGAGCATGTGTTGGAGATGTT 57.570 42.857 0.00 0.00 0.00 2.71
866 1442 6.270231 TGAGATGATGAGATGAGATGACCAAT 59.730 38.462 0.00 0.00 0.00 3.16
979 1566 1.014564 GGCGGGTTTCTCAGTTCGAG 61.015 60.000 0.00 0.00 43.80 4.04
1005 1600 1.675641 CTCTGCTCCGTTTTGGGGG 60.676 63.158 0.00 0.00 39.40 5.40
1008 1603 0.035458 AGGACTCTGCTCCGTTTTGG 59.965 55.000 0.00 0.00 35.20 3.28
1009 1604 1.433534 GAGGACTCTGCTCCGTTTTG 58.566 55.000 0.00 0.00 35.20 2.44
1011 1606 1.587054 CGAGGACTCTGCTCCGTTT 59.413 57.895 0.00 0.00 35.20 3.60
1012 1607 2.995872 GCGAGGACTCTGCTCCGTT 61.996 63.158 8.26 0.00 35.20 4.44
1014 1609 4.544689 CGCGAGGACTCTGCTCCG 62.545 72.222 0.00 0.00 35.20 4.63
1015 1610 3.119709 CTCGCGAGGACTCTGCTCC 62.120 68.421 28.40 0.00 30.39 4.70
1043 1818 3.161450 GCCGGTAGCCTCATCCCA 61.161 66.667 1.90 0.00 34.35 4.37
1199 1974 0.251354 GTGAGATGAGCTTGGAGGCA 59.749 55.000 0.00 0.00 34.17 4.75
1623 2398 1.079621 TGTACCATCCTCCACGGGT 59.920 57.895 0.00 0.00 37.43 5.28
1641 2416 3.944087 GGAATAACTCCAAGCACTCTGT 58.056 45.455 0.00 0.00 44.67 3.41
1718 2493 4.106013 ACAAGCATGCAGCACACTTGTT 62.106 45.455 27.75 17.41 46.47 2.83
1781 2556 1.488393 AGCCCACTCTCCTTAGCAATC 59.512 52.381 0.00 0.00 0.00 2.67
1790 2565 2.050144 TCCATATCAAGCCCACTCTCC 58.950 52.381 0.00 0.00 0.00 3.71
1813 2588 1.364626 GACTGAGTTCCATGCTGCGG 61.365 60.000 0.00 0.00 0.00 5.69
1814 2589 1.690283 CGACTGAGTTCCATGCTGCG 61.690 60.000 0.00 0.00 0.00 5.18
2002 2777 2.282701 AATCAACGCATTCCATGTGC 57.717 45.000 0.00 0.00 44.35 4.57
2054 2829 5.287170 TCTCATGAAGCAATTCAAGAACG 57.713 39.130 0.00 0.00 34.24 3.95
2062 2837 4.341235 CACCCATCATCTCATGAAGCAATT 59.659 41.667 0.00 0.00 43.50 2.32
2259 3034 3.525609 TCAAACACCTTCCTGGCCATATA 59.474 43.478 5.51 0.00 40.22 0.86
2303 3078 2.245159 TGATCGATGTCCAGGCAATC 57.755 50.000 0.54 0.00 0.00 2.67
2372 3147 4.030216 TGCCAGTACTGACCATCTGATTA 58.970 43.478 24.68 0.00 0.00 1.75
2551 3326 3.152341 GCATCCTTAAGCATACCAGCAT 58.848 45.455 0.00 0.00 36.85 3.79
2645 3420 0.110056 GCTCAACATCACCAACTGCG 60.110 55.000 0.00 0.00 0.00 5.18
2723 3498 6.051074 TGAGTACAGATTAGCCATCACAATG 58.949 40.000 0.00 0.00 33.75 2.82
2724 3499 6.239217 TGAGTACAGATTAGCCATCACAAT 57.761 37.500 0.00 0.00 33.75 2.71
2776 3551 1.315690 CCACAGCATGCTCCTTATGG 58.684 55.000 19.68 15.99 42.53 2.74
2845 3620 3.868077 GCAACCAGTTCTAGCAGACTATG 59.132 47.826 0.00 0.00 0.00 2.23
2860 3635 2.751259 ACAATGTATCTGCAGCAACCAG 59.249 45.455 9.47 4.80 0.00 4.00
2876 3651 0.243365 TGCCCGCTTTGCTAACAATG 59.757 50.000 0.00 0.00 35.21 2.82
2930 3705 7.222872 CCAGGCTCTTGTCTATAATTGAATCT 58.777 38.462 0.00 0.00 0.00 2.40
2960 3735 5.304686 TGTCTCCATTCAACAGTTAGGTT 57.695 39.130 0.00 0.00 0.00 3.50
3014 3789 6.489700 TCAGGCTTGAAAATTACATCTCAACA 59.510 34.615 0.00 0.00 0.00 3.33
3080 3855 6.429078 ATCAATATGATTGACCATCAGGTTCG 59.571 38.462 4.08 0.00 45.52 3.95
3167 3942 8.540388 TCAGCTCATAGTACAAAAGGTTTAGAT 58.460 33.333 0.00 0.00 0.00 1.98
3238 4013 6.489700 TCATGAAATTCTCTGTTGCTTTGGTA 59.510 34.615 0.00 0.00 0.00 3.25
3932 4707 0.877071 AAGGCAGATCTTGTTGTGCG 59.123 50.000 0.00 0.00 36.76 5.34
3986 4761 3.634910 GAGCTGGGAAGTAGAGAAGTAGG 59.365 52.174 0.00 0.00 0.00 3.18
3998 4773 1.280133 TGGACTTCATGAGCTGGGAAG 59.720 52.381 14.02 14.02 42.79 3.46
4019 4794 1.265365 GCTTGCGTGCTCTTCTTCTTT 59.735 47.619 0.00 0.00 0.00 2.52
4052 4827 6.626623 GCGAGTCCAGAATAAGTTAGGTAACA 60.627 42.308 2.83 0.00 38.62 2.41
4176 4951 4.146745 AGTTCCCACCGGTAACATTATC 57.853 45.455 18.50 1.76 0.00 1.75
4178 4953 4.073549 CAAAGTTCCCACCGGTAACATTA 58.926 43.478 18.50 0.00 0.00 1.90
4206 4981 3.322828 AGATTGCAGGCTGTTGTTTTCAT 59.677 39.130 17.16 0.00 0.00 2.57
4207 4982 2.694628 AGATTGCAGGCTGTTGTTTTCA 59.305 40.909 17.16 0.06 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.