Multiple sequence alignment - TraesCS4B01G199200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G199200 chr4B 100.000 6267 0 0 1 6267 427804462 427810728 0.000000e+00 11574.0
1 TraesCS4B01G199200 chr4B 85.026 768 90 12 139 903 579735332 579736077 0.000000e+00 758.0
2 TraesCS4B01G199200 chr4B 84.173 139 19 3 2027 2164 351626797 351626933 1.420000e-26 132.0
3 TraesCS4B01G199200 chr4A 94.639 2257 111 5 1943 4195 118639095 118636845 0.000000e+00 3489.0
4 TraesCS4B01G199200 chr4A 91.262 1625 81 27 4469 6068 118636294 118634706 0.000000e+00 2158.0
5 TraesCS4B01G199200 chr4A 89.348 751 58 15 990 1731 118639842 118639105 0.000000e+00 924.0
6 TraesCS4B01G199200 chr4A 92.228 193 13 2 4192 4384 118636521 118636331 8.010000e-69 272.0
7 TraesCS4B01G199200 chr4A 88.060 134 13 2 3796 3929 261879385 261879515 8.410000e-34 156.0
8 TraesCS4B01G199200 chr4A 92.233 103 6 2 6167 6267 118634711 118634609 1.820000e-30 145.0
9 TraesCS4B01G199200 chr4A 87.500 120 13 2 6057 6174 60677560 60677441 3.050000e-28 137.0
10 TraesCS4B01G199200 chr4A 86.667 120 13 3 6057 6173 638172438 638172319 5.100000e-26 130.0
11 TraesCS4B01G199200 chr4A 92.857 84 6 0 3972 4055 118636988 118637071 8.530000e-24 122.0
12 TraesCS4B01G199200 chr4A 98.246 57 1 0 4392 4448 118636341 118636285 4.000000e-17 100.0
13 TraesCS4B01G199200 chr4D 90.791 1542 97 13 2262 3802 347234049 347235546 0.000000e+00 2019.0
14 TraesCS4B01G199200 chr4D 92.605 1190 61 17 4281 5457 347235768 347236943 0.000000e+00 1685.0
15 TraesCS4B01G199200 chr4D 89.449 1289 98 21 945 2214 347232764 347234033 0.000000e+00 1592.0
16 TraesCS4B01G199200 chr4D 86.029 816 91 11 81 893 203009939 203010734 0.000000e+00 854.0
17 TraesCS4B01G199200 chr4D 85.259 848 84 19 79 903 431556112 431555283 0.000000e+00 835.0
18 TraesCS4B01G199200 chr4D 83.578 816 111 11 81 893 501037582 501038377 0.000000e+00 743.0
19 TraesCS4B01G199200 chr4D 84.783 414 35 14 79 487 486614805 486615195 2.120000e-104 390.0
20 TraesCS4B01G199200 chr4D 92.432 185 10 3 4054 4236 347235588 347235770 1.730000e-65 261.0
21 TraesCS4B01G199200 chr4D 85.057 174 20 5 81 249 487054411 487054583 8.350000e-39 172.0
22 TraesCS4B01G199200 chr4D 87.603 121 13 1 6056 6174 360763048 360762928 8.470000e-29 139.0
23 TraesCS4B01G199200 chr6D 85.354 833 89 20 81 906 17444216 17445022 0.000000e+00 832.0
24 TraesCS4B01G199200 chr6D 81.477 853 87 23 79 904 286639523 286638715 8.860000e-178 634.0
25 TraesCS4B01G199200 chr6D 84.709 412 42 9 79 487 351977277 351977670 5.890000e-105 392.0
26 TraesCS4B01G199200 chr7A 84.423 841 117 9 83 920 13341670 13340841 0.000000e+00 815.0
27 TraesCS4B01G199200 chr7A 94.000 100 5 1 3796 3895 9012911 9012813 3.910000e-32 150.0
28 TraesCS4B01G199200 chr3B 84.335 849 91 17 79 904 348118887 348118058 0.000000e+00 793.0
29 TraesCS4B01G199200 chr3B 97.619 84 2 0 3972 4055 338594231 338594148 1.820000e-30 145.0
30 TraesCS4B01G199200 chr3B 95.294 85 2 2 3972 4055 338594149 338594232 3.940000e-27 134.0
31 TraesCS4B01G199200 chr3B 88.889 108 10 1 6065 6170 188155710 188155817 1.420000e-26 132.0
32 TraesCS4B01G199200 chr3B 93.023 86 6 0 3972 4057 589653665 589653750 6.600000e-25 126.0
33 TraesCS4B01G199200 chr3B 90.805 87 8 0 3969 4055 747332446 747332532 3.970000e-22 117.0
34 TraesCS4B01G199200 chr3B 85.542 83 12 0 2987 3069 822575738 822575656 3.110000e-13 87.9
35 TraesCS4B01G199200 chr5A 85.582 756 89 8 139 893 685991661 685990925 0.000000e+00 774.0
36 TraesCS4B01G199200 chr5A 89.091 110 10 1 6064 6171 317490976 317491085 1.100000e-27 135.0
37 TraesCS4B01G199200 chr5A 89.655 87 9 0 3972 4058 366233871 366233785 1.850000e-20 111.0
38 TraesCS4B01G199200 chrUn 83.373 836 125 9 83 915 30900258 30899434 0.000000e+00 761.0
39 TraesCS4B01G199200 chr1D 83.571 840 103 24 4331 5148 481329345 481328519 0.000000e+00 754.0
40 TraesCS4B01G199200 chr1D 81.818 473 50 20 23 479 449983810 449984262 1.280000e-96 364.0
41 TraesCS4B01G199200 chr1D 85.153 229 25 6 3249 3471 481329618 481329393 6.320000e-55 226.0
42 TraesCS4B01G199200 chr1D 88.288 111 11 1 6063 6171 366680639 366680749 1.420000e-26 132.0
43 TraesCS4B01G199200 chr1D 80.723 83 8 3 5295 5377 481328144 481328070 2.440000e-04 58.4
44 TraesCS4B01G199200 chr1A 83.037 843 114 20 81 918 591001037 591000219 0.000000e+00 737.0
45 TraesCS4B01G199200 chr1A 81.447 318 38 16 3218 3529 577636040 577635738 2.260000e-59 241.0
46 TraesCS4B01G199200 chr1A 86.420 162 17 3 3301 3457 577759796 577759635 8.350000e-39 172.0
47 TraesCS4B01G199200 chr7B 82.831 862 99 15 79 912 553654779 553655619 0.000000e+00 726.0
48 TraesCS4B01G199200 chr5D 83.067 815 117 9 81 893 376719282 376720077 0.000000e+00 721.0
49 TraesCS4B01G199200 chr5D 93.000 100 6 1 3796 3895 353634794 353634892 1.820000e-30 145.0
50 TraesCS4B01G199200 chr5D 88.000 100 11 1 3796 3895 377984569 377984667 3.970000e-22 117.0
51 TraesCS4B01G199200 chr5B 83.515 734 76 16 79 787 507166678 507165965 1.470000e-180 643.0
52 TraesCS4B01G199200 chr5B 94.000 100 5 1 3796 3895 299625421 299625519 3.910000e-32 150.0
53 TraesCS4B01G199200 chr5B 96.471 85 3 0 3972 4056 18357221 18357305 2.360000e-29 141.0
54 TraesCS4B01G199200 chr5B 93.103 87 6 0 3972 4058 18357303 18357217 1.830000e-25 128.0
55 TraesCS4B01G199200 chr2B 80.169 827 111 33 79 891 419294522 419295309 2.540000e-158 569.0
56 TraesCS4B01G199200 chr2B 82.461 707 62 26 79 761 653763362 653764030 4.240000e-156 562.0
57 TraesCS4B01G199200 chr2B 94.000 100 5 1 3796 3895 265424883 265424981 3.910000e-32 150.0
58 TraesCS4B01G199200 chr2B 94.000 100 5 1 3796 3895 720387008 720386910 3.910000e-32 150.0
59 TraesCS4B01G199200 chr2B 86.567 134 15 3 3796 3929 107034100 107033970 1.820000e-30 145.0
60 TraesCS4B01G199200 chr1B 77.963 599 102 21 3112 3692 669298648 669299234 1.290000e-91 348.0
61 TraesCS4B01G199200 chr1B 90.090 111 11 0 2054 2164 44051818 44051928 1.820000e-30 145.0
62 TraesCS4B01G199200 chr7D 87.755 147 13 4 3796 3941 467039744 467039602 3.890000e-37 167.0
63 TraesCS4B01G199200 chr2A 88.793 116 10 2 6062 6175 25813045 25812931 8.470000e-29 139.0
64 TraesCS4B01G199200 chr2A 85.542 83 12 0 2987 3069 19349502 19349420 3.110000e-13 87.9
65 TraesCS4B01G199200 chr2D 88.696 115 10 2 6063 6174 138808186 138808300 3.050000e-28 137.0
66 TraesCS4B01G199200 chr6A 85.496 131 13 6 6056 6182 594523784 594523912 1.420000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G199200 chr4B 427804462 427810728 6266 False 11574.000000 11574 100.000000 1 6267 1 chr4B.!!$F2 6266
1 TraesCS4B01G199200 chr4B 579735332 579736077 745 False 758.000000 758 85.026000 139 903 1 chr4B.!!$F3 764
2 TraesCS4B01G199200 chr4A 118634609 118639842 5233 True 1181.333333 3489 92.992667 990 6267 6 chr4A.!!$R3 5277
3 TraesCS4B01G199200 chr4D 347232764 347236943 4179 False 1389.250000 2019 91.319250 945 5457 4 chr4D.!!$F5 4512
4 TraesCS4B01G199200 chr4D 203009939 203010734 795 False 854.000000 854 86.029000 81 893 1 chr4D.!!$F1 812
5 TraesCS4B01G199200 chr4D 431555283 431556112 829 True 835.000000 835 85.259000 79 903 1 chr4D.!!$R2 824
6 TraesCS4B01G199200 chr4D 501037582 501038377 795 False 743.000000 743 83.578000 81 893 1 chr4D.!!$F4 812
7 TraesCS4B01G199200 chr6D 17444216 17445022 806 False 832.000000 832 85.354000 81 906 1 chr6D.!!$F1 825
8 TraesCS4B01G199200 chr6D 286638715 286639523 808 True 634.000000 634 81.477000 79 904 1 chr6D.!!$R1 825
9 TraesCS4B01G199200 chr7A 13340841 13341670 829 True 815.000000 815 84.423000 83 920 1 chr7A.!!$R2 837
10 TraesCS4B01G199200 chr3B 348118058 348118887 829 True 793.000000 793 84.335000 79 904 1 chr3B.!!$R2 825
11 TraesCS4B01G199200 chr5A 685990925 685991661 736 True 774.000000 774 85.582000 139 893 1 chr5A.!!$R2 754
12 TraesCS4B01G199200 chrUn 30899434 30900258 824 True 761.000000 761 83.373000 83 915 1 chrUn.!!$R1 832
13 TraesCS4B01G199200 chr1D 481328070 481329618 1548 True 346.133333 754 83.149000 3249 5377 3 chr1D.!!$R1 2128
14 TraesCS4B01G199200 chr1A 591000219 591001037 818 True 737.000000 737 83.037000 81 918 1 chr1A.!!$R3 837
15 TraesCS4B01G199200 chr7B 553654779 553655619 840 False 726.000000 726 82.831000 79 912 1 chr7B.!!$F1 833
16 TraesCS4B01G199200 chr5D 376719282 376720077 795 False 721.000000 721 83.067000 81 893 1 chr5D.!!$F2 812
17 TraesCS4B01G199200 chr5B 507165965 507166678 713 True 643.000000 643 83.515000 79 787 1 chr5B.!!$R2 708
18 TraesCS4B01G199200 chr2B 419294522 419295309 787 False 569.000000 569 80.169000 79 891 1 chr2B.!!$F2 812
19 TraesCS4B01G199200 chr2B 653763362 653764030 668 False 562.000000 562 82.461000 79 761 1 chr2B.!!$F3 682
20 TraesCS4B01G199200 chr1B 669298648 669299234 586 False 348.000000 348 77.963000 3112 3692 1 chr1B.!!$F2 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 1023 0.039035 TATTTTTGCGGGAGGCCTGT 59.961 50.000 12.00 0.00 42.61 4.00 F
1033 1136 0.044092 TGGGGCTTGGTATCCTCTCA 59.956 55.000 0.00 0.00 0.00 3.27 F
1305 1408 0.251073 GGTAGCGCCCCTAAACTCAA 59.749 55.000 2.29 0.00 0.00 3.02 F
2343 2455 0.322975 GCTGACTGTGGAGGATGTGT 59.677 55.000 0.00 0.00 0.00 3.72 F
2489 2601 1.068250 GAATCTCTCTTCCCCGCGG 59.932 63.158 21.04 21.04 0.00 6.46 F
2508 2620 1.213926 GGCCATCCTCCTGTCTGAATT 59.786 52.381 0.00 0.00 0.00 2.17 F
3896 4026 0.038890 TGGACCCGATGCAAATTCCA 59.961 50.000 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 1938 0.171903 CCATGCTTTACTGGTGCAGC 59.828 55.0 9.47 9.47 40.18 5.25 R
2214 2326 0.251653 AGCTGACGGGTGAGAAGGTA 60.252 55.0 0.00 0.00 0.00 3.08 R
2859 2971 0.468226 ACTCGGACAACTCCTGCAAA 59.532 50.0 0.00 0.00 33.79 3.68 R
3882 4012 0.179103 GGGCTTGGAATTTGCATCGG 60.179 55.0 0.00 0.00 0.00 4.18 R
3884 4014 0.903942 TGGGGCTTGGAATTTGCATC 59.096 50.0 0.00 0.00 0.00 3.91 R
3970 4100 1.553690 ATTGTGGGACGGAGGGAGTG 61.554 60.0 0.00 0.00 0.00 3.51 R
5457 6221 0.323451 TCTCAGGAAGTGGCGAGCTA 60.323 55.0 0.00 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.843401 AGCCAATTTGATGCTGCAAA 57.157 40.000 6.36 0.00 41.49 3.68
21 22 4.475051 AGCCAATTTGATGCTGCAAATA 57.525 36.364 6.36 0.00 45.09 1.40
22 23 5.031066 AGCCAATTTGATGCTGCAAATAT 57.969 34.783 6.36 0.00 45.09 1.28
23 24 5.433526 AGCCAATTTGATGCTGCAAATATT 58.566 33.333 6.36 2.69 45.09 1.28
24 25 5.883673 AGCCAATTTGATGCTGCAAATATTT 59.116 32.000 6.36 0.00 45.09 1.40
25 26 6.376018 AGCCAATTTGATGCTGCAAATATTTT 59.624 30.769 6.36 0.00 45.09 1.82
26 27 7.030768 GCCAATTTGATGCTGCAAATATTTTT 58.969 30.769 6.36 0.00 45.09 1.94
27 28 7.008810 GCCAATTTGATGCTGCAAATATTTTTG 59.991 33.333 6.36 4.44 45.09 2.44
28 29 8.237949 CCAATTTGATGCTGCAAATATTTTTGA 58.762 29.630 6.36 0.00 45.09 2.69
29 30 9.613957 CAATTTGATGCTGCAAATATTTTTGAA 57.386 25.926 6.36 1.19 45.09 2.69
47 48 8.702408 TTTTTGAAAATACTAACGATCACACG 57.298 30.769 0.00 0.00 39.31 4.49
49 50 6.384178 TGAAAATACTAACGATCACACGTG 57.616 37.500 15.48 15.48 45.83 4.49
50 51 5.921976 TGAAAATACTAACGATCACACGTGT 59.078 36.000 17.22 17.22 45.83 4.49
51 52 5.756950 AAATACTAACGATCACACGTGTG 57.243 39.130 37.04 37.04 45.83 3.82
52 53 2.060326 ACTAACGATCACACGTGTGG 57.940 50.000 39.88 28.84 45.83 4.17
53 54 1.338973 ACTAACGATCACACGTGTGGT 59.661 47.619 39.88 37.02 45.83 4.16
54 55 2.553602 ACTAACGATCACACGTGTGGTA 59.446 45.455 39.88 26.81 45.83 3.25
55 56 2.060326 AACGATCACACGTGTGGTAG 57.940 50.000 39.88 35.94 45.83 3.18
56 57 0.956633 ACGATCACACGTGTGGTAGT 59.043 50.000 39.88 36.56 45.65 2.73
57 58 1.338973 ACGATCACACGTGTGGTAGTT 59.661 47.619 39.88 24.02 41.17 2.24
58 59 2.223876 ACGATCACACGTGTGGTAGTTT 60.224 45.455 39.88 21.07 41.17 2.66
59 60 2.798283 CGATCACACGTGTGGTAGTTTT 59.202 45.455 39.88 20.29 45.65 2.43
60 61 3.362596 CGATCACACGTGTGGTAGTTTTG 60.363 47.826 39.88 19.93 45.65 2.44
61 62 1.666700 TCACACGTGTGGTAGTTTTGC 59.333 47.619 39.88 0.00 45.65 3.68
62 63 1.398739 CACACGTGTGGTAGTTTTGCA 59.601 47.619 35.65 0.00 42.10 4.08
63 64 2.085320 ACACGTGTGGTAGTTTTGCAA 58.915 42.857 22.71 0.00 34.19 4.08
64 65 2.159490 ACACGTGTGGTAGTTTTGCAAC 60.159 45.455 22.71 0.00 34.19 4.17
65 66 2.096819 CACGTGTGGTAGTTTTGCAACT 59.903 45.455 7.58 0.00 45.73 3.16
66 67 2.353579 ACGTGTGGTAGTTTTGCAACTC 59.646 45.455 0.00 0.00 42.66 3.01
67 68 2.598907 CGTGTGGTAGTTTTGCAACTCG 60.599 50.000 0.00 0.00 42.66 4.18
68 69 2.353579 GTGTGGTAGTTTTGCAACTCGT 59.646 45.455 0.00 0.00 42.66 4.18
69 70 2.610374 TGTGGTAGTTTTGCAACTCGTC 59.390 45.455 0.00 0.00 42.66 4.20
70 71 2.032290 GTGGTAGTTTTGCAACTCGTCC 60.032 50.000 0.00 0.20 42.66 4.79
71 72 2.215196 GGTAGTTTTGCAACTCGTCCA 58.785 47.619 0.00 0.00 42.66 4.02
72 73 2.032290 GGTAGTTTTGCAACTCGTCCAC 60.032 50.000 0.00 0.00 42.66 4.02
73 74 1.745232 AGTTTTGCAACTCGTCCACA 58.255 45.000 0.00 0.00 39.15 4.17
74 75 2.297701 AGTTTTGCAACTCGTCCACAT 58.702 42.857 0.00 0.00 39.15 3.21
75 76 2.033299 AGTTTTGCAACTCGTCCACATG 59.967 45.455 0.00 0.00 39.15 3.21
76 77 0.310543 TTTGCAACTCGTCCACATGC 59.689 50.000 0.00 0.00 37.52 4.06
77 78 0.817229 TTGCAACTCGTCCACATGCA 60.817 50.000 0.00 0.00 44.54 3.96
93 94 2.699910 GCACGAGTTTGCACGAATG 58.300 52.632 1.06 0.00 42.49 2.67
142 146 0.966875 ATGTACGACGGGCTGGTGTA 60.967 55.000 0.00 0.00 0.00 2.90
221 225 0.685097 TGGGCGAACTAGTTTCTGCT 59.315 50.000 20.62 0.00 35.42 4.24
222 226 1.071699 TGGGCGAACTAGTTTCTGCTT 59.928 47.619 20.62 0.00 35.42 3.91
223 227 1.464997 GGGCGAACTAGTTTCTGCTTG 59.535 52.381 20.62 1.74 35.42 4.01
224 228 2.143925 GGCGAACTAGTTTCTGCTTGT 58.856 47.619 20.62 0.00 35.42 3.16
225 229 2.548480 GGCGAACTAGTTTCTGCTTGTT 59.452 45.455 20.62 0.00 37.20 2.83
226 230 3.364068 GGCGAACTAGTTTCTGCTTGTTC 60.364 47.826 20.62 9.26 43.02 3.18
228 232 3.800163 GAACTAGTTTCTGCTTGTTCGC 58.200 45.455 10.02 0.00 39.76 4.70
269 284 4.101790 CGCGCATGTGGGTGAACC 62.102 66.667 14.72 0.00 40.38 3.62
299 333 1.005867 ACACCGCATCCGTACGTTT 60.006 52.632 15.21 0.00 0.00 3.60
300 334 1.286354 ACACCGCATCCGTACGTTTG 61.286 55.000 15.21 11.98 0.00 2.93
308 342 2.816204 TCCGTACGTTTGTTGGATGA 57.184 45.000 15.21 0.00 0.00 2.92
310 344 2.136728 CCGTACGTTTGTTGGATGACA 58.863 47.619 15.21 0.00 0.00 3.58
311 345 2.544686 CCGTACGTTTGTTGGATGACAA 59.455 45.455 15.21 0.00 37.73 3.18
366 400 3.818773 AGGTAAACACACATGGCAACTAC 59.181 43.478 0.00 0.00 37.61 2.73
438 496 7.766278 AGATAAACACACATGAGAACTATGGTC 59.234 37.037 0.00 0.00 0.00 4.02
540 622 5.448496 GGCAACTATGATTTGATTACACGCA 60.448 40.000 0.00 0.00 0.00 5.24
648 731 5.496556 CGGATAACTATATTTGCCATCCCA 58.503 41.667 0.00 0.00 0.00 4.37
708 796 4.722700 GCGCCAGGACATGTGGGT 62.723 66.667 1.15 0.00 35.39 4.51
710 798 1.526887 CGCCAGGACATGTGGGTAT 59.473 57.895 1.15 0.00 35.39 2.73
750 839 1.746220 GCGCGGGATAGAGATGAGTAT 59.254 52.381 8.83 0.00 0.00 2.12
764 854 5.109903 AGATGAGTATTACTTGTTGGACGC 58.890 41.667 0.00 0.00 0.00 5.19
765 855 4.260139 TGAGTATTACTTGTTGGACGCA 57.740 40.909 0.00 0.00 0.00 5.24
813 903 4.494690 CGCATGAGCAATTCTAATGTTCGT 60.495 41.667 0.00 0.00 42.27 3.85
844 936 1.330655 CCGTATGGGCTGTCTCCTGT 61.331 60.000 0.00 0.00 0.00 4.00
854 946 0.320683 TGTCTCCTGTTCATGCCACG 60.321 55.000 0.00 0.00 0.00 4.94
865 957 6.204688 CCTGTTCATGCCACGTATAATATGTT 59.795 38.462 0.00 0.00 0.00 2.71
893 985 4.952262 TGTCTAGTATACCACACGTGTC 57.048 45.455 20.49 6.45 0.00 3.67
895 987 3.618594 GTCTAGTATACCACACGTGTCGA 59.381 47.826 20.49 7.22 0.00 4.20
920 1012 5.610124 CGTTATCGGCATGCAATATTTTTGC 60.610 40.000 21.36 5.04 45.11 3.68
927 1019 1.570813 GCAATATTTTTGCGGGAGGC 58.429 50.000 0.00 0.00 43.96 4.70
928 1020 1.806247 GCAATATTTTTGCGGGAGGCC 60.806 52.381 0.00 0.00 42.61 5.19
929 1021 1.756538 CAATATTTTTGCGGGAGGCCT 59.243 47.619 3.86 3.86 42.61 5.19
930 1022 1.402787 ATATTTTTGCGGGAGGCCTG 58.597 50.000 12.00 0.00 42.61 4.85
931 1023 0.039035 TATTTTTGCGGGAGGCCTGT 59.961 50.000 12.00 0.00 42.61 4.00
932 1024 0.039035 ATTTTTGCGGGAGGCCTGTA 59.961 50.000 12.00 0.00 42.61 2.74
933 1025 0.039035 TTTTTGCGGGAGGCCTGTAT 59.961 50.000 12.00 0.00 42.61 2.29
934 1026 0.913205 TTTTGCGGGAGGCCTGTATA 59.087 50.000 12.00 0.00 42.61 1.47
935 1027 0.913205 TTTGCGGGAGGCCTGTATAA 59.087 50.000 12.00 0.00 42.61 0.98
936 1028 0.179468 TTGCGGGAGGCCTGTATAAC 59.821 55.000 12.00 0.00 42.61 1.89
937 1029 1.300697 GCGGGAGGCCTGTATAACG 60.301 63.158 12.00 6.47 34.80 3.18
938 1030 1.741327 GCGGGAGGCCTGTATAACGA 61.741 60.000 12.00 0.00 34.80 3.85
939 1031 0.966920 CGGGAGGCCTGTATAACGAT 59.033 55.000 12.00 0.00 0.00 3.73
940 1032 1.343465 CGGGAGGCCTGTATAACGATT 59.657 52.381 12.00 0.00 0.00 3.34
941 1033 2.767505 GGGAGGCCTGTATAACGATTG 58.232 52.381 12.00 0.00 0.00 2.67
942 1034 2.550208 GGGAGGCCTGTATAACGATTGG 60.550 54.545 12.00 0.00 0.00 3.16
943 1035 2.367567 GGAGGCCTGTATAACGATTGGA 59.632 50.000 12.00 0.00 0.00 3.53
985 1080 3.196469 GCTCATATAGGGCATGTGCTAGA 59.804 47.826 4.84 0.00 38.96 2.43
1033 1136 0.044092 TGGGGCTTGGTATCCTCTCA 59.956 55.000 0.00 0.00 0.00 3.27
1046 1149 3.381333 CTCTCATCCCGCAGCTGCA 62.381 63.158 36.03 19.38 42.21 4.41
1091 1194 1.829096 GACTCCCTACGCTCCTCCC 60.829 68.421 0.00 0.00 0.00 4.30
1093 1196 4.517934 TCCCTACGCTCCTCCCGG 62.518 72.222 0.00 0.00 0.00 5.73
1121 1224 4.815108 GATCCACCCGCCCCCAAC 62.815 72.222 0.00 0.00 0.00 3.77
1140 1243 3.646715 CCCCCAACCCGAGCTTCA 61.647 66.667 0.00 0.00 0.00 3.02
1145 1248 1.318576 CCAACCCGAGCTTCACTTTT 58.681 50.000 0.00 0.00 0.00 2.27
1201 1304 1.141234 GCCCCGTTCCTCTTAGACG 59.859 63.158 0.00 0.00 36.61 4.18
1304 1407 0.616679 AGGTAGCGCCCCTAAACTCA 60.617 55.000 14.20 0.00 38.26 3.41
1305 1408 0.251073 GGTAGCGCCCCTAAACTCAA 59.749 55.000 2.29 0.00 0.00 3.02
1307 1410 2.210961 GTAGCGCCCCTAAACTCAATC 58.789 52.381 2.29 0.00 0.00 2.67
1308 1411 0.912486 AGCGCCCCTAAACTCAATCT 59.088 50.000 2.29 0.00 0.00 2.40
1317 1420 5.454471 CCCCTAAACTCAATCTCCTCTCATG 60.454 48.000 0.00 0.00 0.00 3.07
1350 1453 2.188524 CAGTGCGTGTATACAGAGCAG 58.811 52.381 26.79 16.97 39.96 4.24
1360 1463 3.815856 ATACAGAGCAGTGATCACAGG 57.184 47.619 27.02 18.90 0.00 4.00
1361 1464 0.612229 ACAGAGCAGTGATCACAGGG 59.388 55.000 27.02 16.52 0.00 4.45
1387 1495 5.830457 GGCTATTAAGAATGGGCTTTCTCTT 59.170 40.000 4.19 1.62 40.94 2.85
1448 1558 7.809665 TCATCACAACATACATTTCAAGAGTG 58.190 34.615 0.00 0.00 0.00 3.51
1467 1577 5.721960 AGAGTGTACTAATCTTGGGTGACAT 59.278 40.000 0.00 0.00 27.02 3.06
1509 1620 5.938125 GCTTCTGAACCTAAATTCCAGTGTA 59.062 40.000 0.00 0.00 0.00 2.90
1522 1633 3.362706 TCCAGTGTACCTGACCTCATAC 58.637 50.000 11.58 0.00 44.49 2.39
1528 1639 6.096987 CAGTGTACCTGACCTCATACATTACT 59.903 42.308 5.67 0.00 44.49 2.24
1532 1643 8.496916 TGTACCTGACCTCATACATTACTAGTA 58.503 37.037 0.00 0.00 0.00 1.82
1572 1683 2.354259 CTCCTTGGCTTAGTCTTGCTG 58.646 52.381 0.00 0.00 0.00 4.41
1594 1705 6.420913 TGCTCACCTTTACTAGTCTTTCTT 57.579 37.500 0.00 0.00 0.00 2.52
1599 1710 9.930693 CTCACCTTTACTAGTCTTTCTTGTAAT 57.069 33.333 0.00 0.00 41.31 1.89
1634 1746 3.577649 TTGTCAAACCAAACGAAGCAA 57.422 38.095 0.00 0.00 0.00 3.91
1637 1749 3.119316 TGTCAAACCAAACGAAGCAACAT 60.119 39.130 0.00 0.00 0.00 2.71
1641 1753 7.027161 GTCAAACCAAACGAAGCAACATATAT 58.973 34.615 0.00 0.00 0.00 0.86
1642 1754 8.178964 GTCAAACCAAACGAAGCAACATATATA 58.821 33.333 0.00 0.00 0.00 0.86
1643 1755 8.898761 TCAAACCAAACGAAGCAACATATATAT 58.101 29.630 0.00 0.00 0.00 0.86
1693 1805 2.173669 GTCTGTGCGTGTGCTGTGT 61.174 57.895 0.00 0.00 43.34 3.72
1723 1835 3.313526 GTGTGCTCTGCTAATAATGTGGG 59.686 47.826 0.00 0.00 0.00 4.61
1735 1847 6.014840 GCTAATAATGTGGGCTGGTACTACTA 60.015 42.308 0.00 0.00 0.00 1.82
1792 1904 9.921637 GATAATTGGCTATATAGATGGTAGAGC 57.078 37.037 14.16 0.00 36.06 4.09
1797 1909 5.205056 GCTATATAGATGGTAGAGCCCAGT 58.795 45.833 14.16 0.00 38.07 4.00
1826 1938 2.559998 AACTTTTTGTGAGTGTGCCG 57.440 45.000 0.00 0.00 0.00 5.69
1842 1954 1.965930 CCGCTGCACCAGTAAAGCA 60.966 57.895 0.00 0.00 35.33 3.91
1858 1970 1.780503 AGCATGGAAATAGGCCAACC 58.219 50.000 5.01 0.75 39.21 3.77
1869 1981 1.154430 AGGCCAACCAGGTCCTTAAA 58.846 50.000 5.01 0.00 45.84 1.52
1870 1982 1.716503 AGGCCAACCAGGTCCTTAAAT 59.283 47.619 5.01 0.00 45.84 1.40
1885 1997 5.529800 GTCCTTAAATTCCGCTGGCTATAAA 59.470 40.000 0.00 0.00 0.00 1.40
1903 2015 6.986817 GCTATAAAGGCTTCATGAGTGAGTTA 59.013 38.462 0.00 0.00 35.39 2.24
1915 2027 6.767902 TCATGAGTGAGTTAAAAGCAAAGACT 59.232 34.615 0.00 0.00 0.00 3.24
1916 2028 6.363577 TGAGTGAGTTAAAAGCAAAGACTG 57.636 37.500 0.00 0.00 0.00 3.51
1935 2047 7.554959 AGACTGGGAGAAACTATGTAAAGAA 57.445 36.000 0.00 0.00 0.00 2.52
1940 2052 5.065346 GGGAGAAACTATGTAAAGAAGCAGC 59.935 44.000 0.00 0.00 0.00 5.25
1964 2076 6.260050 GCTTAAGAAATCGTTGGGATGATACA 59.740 38.462 6.67 0.00 34.93 2.29
1968 2080 5.943416 AGAAATCGTTGGGATGATACAAACA 59.057 36.000 0.00 0.00 34.93 2.83
2003 2115 4.024218 GCATGAAAGCTCAGTGATATGGAC 60.024 45.833 0.00 0.00 34.23 4.02
2214 2326 5.010012 CCTCTAACCAATGAGTGCACTTTTT 59.990 40.000 22.65 14.61 0.00 1.94
2216 2328 6.966021 TCTAACCAATGAGTGCACTTTTTAC 58.034 36.000 22.65 8.26 0.00 2.01
2219 2331 4.649218 ACCAATGAGTGCACTTTTTACCTT 59.351 37.500 22.65 4.02 0.00 3.50
2231 2343 3.396260 TTTTACCTTCTCACCCGTCAG 57.604 47.619 0.00 0.00 0.00 3.51
2256 2368 6.204495 GCTCCCATTCAACATCTCTAATTCTC 59.796 42.308 0.00 0.00 0.00 2.87
2257 2369 7.199167 TCCCATTCAACATCTCTAATTCTCA 57.801 36.000 0.00 0.00 0.00 3.27
2258 2370 7.809238 TCCCATTCAACATCTCTAATTCTCAT 58.191 34.615 0.00 0.00 0.00 2.90
2259 2371 7.718314 TCCCATTCAACATCTCTAATTCTCATG 59.282 37.037 0.00 0.00 0.00 3.07
2343 2455 0.322975 GCTGACTGTGGAGGATGTGT 59.677 55.000 0.00 0.00 0.00 3.72
2420 2532 1.914700 GATTCTCTCGCGAACACACTC 59.085 52.381 11.33 0.00 0.00 3.51
2424 2536 1.170290 TCTCGCGAACACACTCCTCA 61.170 55.000 11.33 0.00 0.00 3.86
2470 2582 2.976882 AGGTAGGTAGCTCTCGATCTCT 59.023 50.000 0.00 0.00 0.00 3.10
2489 2601 1.068250 GAATCTCTCTTCCCCGCGG 59.932 63.158 21.04 21.04 0.00 6.46
2508 2620 1.213926 GGCCATCCTCCTGTCTGAATT 59.786 52.381 0.00 0.00 0.00 2.17
2542 2654 3.553715 CCGTACTGATACATGCTGCTCAT 60.554 47.826 0.00 0.00 35.31 2.90
2550 2662 3.047718 ATGCTGCTCATGTGCGTGC 62.048 57.895 22.22 22.22 33.26 5.34
2682 2794 3.195825 TCCTTACTTCTACTTCTGCTGGC 59.804 47.826 0.00 0.00 0.00 4.85
2703 2815 3.181516 GCCTCAGTAATGTTCGCTTCTTG 60.182 47.826 0.00 0.00 0.00 3.02
2845 2957 6.149973 GTGATCTGATTTGTGGACTCAATTCA 59.850 38.462 0.00 9.76 36.73 2.57
2859 2971 6.212888 ACTCAATTCAGTTTCTTGCAACTT 57.787 33.333 0.00 0.00 34.60 2.66
2994 3106 7.013220 TCTGCATATGTCTATCCTAAACTCCT 58.987 38.462 4.29 0.00 0.00 3.69
3045 3157 3.332919 CCTGTTCAGGTCATCTCAACAG 58.667 50.000 10.40 0.00 42.37 3.16
3048 3160 4.380531 TGTTCAGGTCATCTCAACAGTTC 58.619 43.478 0.00 0.00 0.00 3.01
3050 3162 1.728971 CAGGTCATCTCAACAGTTCGC 59.271 52.381 0.00 0.00 0.00 4.70
3078 3190 7.867403 CAGCAGTAATGTGGTTTGTCTTTAAAT 59.133 33.333 0.00 0.00 0.00 1.40
3090 3202 9.556030 GGTTTGTCTTTAAATGTCTGCTATTAC 57.444 33.333 0.00 0.00 0.00 1.89
3104 3216 4.223953 TGCTATTACCCCTCTCTGTTAGG 58.776 47.826 0.00 0.00 0.00 2.69
3244 3360 5.823861 ATTATGTTCCTTTGGCTTTTGGT 57.176 34.783 0.00 0.00 0.00 3.67
3351 3469 8.299570 ACTAGAAAGCCTTGATACAATGTTTTG 58.700 33.333 0.00 0.00 38.86 2.44
3587 3716 7.517417 GCAGGTATTGAATTATCTGTTGACTCG 60.517 40.741 0.00 0.00 33.62 4.18
3708 3838 2.893637 TGCTCGTGCTTTCCTAAGATC 58.106 47.619 11.19 0.00 40.48 2.75
3734 3864 7.413000 CGGTGTCTTATTGGTCTATTTGTTCAG 60.413 40.741 0.00 0.00 0.00 3.02
3759 3889 4.762251 GCTACCAAGTCTGGAATTTCTGTT 59.238 41.667 0.00 0.00 46.92 3.16
3763 3893 5.532779 ACCAAGTCTGGAATTTCTGTTCTTC 59.467 40.000 0.00 0.00 46.92 2.87
3811 3941 3.430895 GTGAGCAATTTCAACCTGCAATG 59.569 43.478 0.00 0.00 38.58 2.82
3819 3949 7.520292 GCAATTTCAACCTGCAATGTTTTGTAT 60.520 33.333 0.00 0.00 36.09 2.29
3872 4002 6.128227 CCCATTGCAATACAAAGGTTGATTTG 60.128 38.462 12.53 0.00 44.12 2.32
3896 4026 0.038890 TGGACCCGATGCAAATTCCA 59.961 50.000 0.00 0.00 0.00 3.53
3903 4033 0.903942 GATGCAAATTCCAAGCCCCA 59.096 50.000 0.00 0.00 0.00 4.96
3970 4100 1.737793 GTACATTGGTGCTACACTGCC 59.262 52.381 0.00 0.00 34.40 4.85
3974 4104 0.250295 TTGGTGCTACACTGCCACTC 60.250 55.000 0.00 0.00 34.40 3.51
4016 4146 2.230864 GCGTTTTGCAAGCTACGTTAG 58.769 47.619 22.85 0.00 45.45 2.34
4277 4738 2.762745 ACTTCGCATAACGTGGTTCTT 58.237 42.857 0.00 0.00 44.19 2.52
4373 4834 9.768662 AAAGTGCAAGATTCATTCTTAACATTT 57.231 25.926 0.00 0.00 42.98 2.32
4374 4835 8.752766 AGTGCAAGATTCATTCTTAACATTTG 57.247 30.769 0.00 0.00 42.98 2.32
4375 4836 8.579006 AGTGCAAGATTCATTCTTAACATTTGA 58.421 29.630 0.00 0.00 42.98 2.69
4376 4837 9.195411 GTGCAAGATTCATTCTTAACATTTGAA 57.805 29.630 0.00 0.00 42.98 2.69
4377 4838 9.761504 TGCAAGATTCATTCTTAACATTTGAAA 57.238 25.926 0.00 0.00 42.98 2.69
4569 5075 1.720894 TGCTTGTGCAGTTGTGACG 59.279 52.632 0.00 0.00 45.31 4.35
4951 5457 0.796312 ACATCGTTGACAATGTCGCC 59.204 50.000 9.00 0.64 34.95 5.54
5159 5669 2.783135 ACATTGAGTGATGGTGGTGTC 58.217 47.619 0.00 0.00 0.00 3.67
5193 5707 6.995686 AGCATAAATGGTCGTAAATCATGGTA 59.004 34.615 0.00 0.00 32.13 3.25
5220 5734 2.710377 TGGCACTGACATTGTGATACC 58.290 47.619 0.00 0.00 37.60 2.73
5322 6082 2.159198 GCTATTTGTGATTGGTGGCCTG 60.159 50.000 3.32 0.00 0.00 4.85
5323 6083 1.269012 ATTTGTGATTGGTGGCCTGG 58.731 50.000 3.32 0.00 0.00 4.45
5324 6084 1.470996 TTTGTGATTGGTGGCCTGGC 61.471 55.000 11.05 11.05 0.00 4.85
5401 6165 3.996150 TCGAGGTGGAAACGATATACC 57.004 47.619 0.00 0.00 0.00 2.73
5412 6176 5.692204 GGAAACGATATACCAGTGACAGATG 59.308 44.000 0.00 0.00 0.00 2.90
5413 6177 4.244425 ACGATATACCAGTGACAGATGC 57.756 45.455 0.00 0.00 0.00 3.91
5426 6190 2.892425 GATGCCTCGCCACTTCCG 60.892 66.667 0.00 0.00 0.00 4.30
5491 6255 3.118482 TCCTGAGACCTCAATGCTTCATC 60.118 47.826 1.08 0.00 39.39 2.92
5541 6306 3.071479 TGTTGCGGGATTTTCAGTAGTC 58.929 45.455 0.00 0.00 0.00 2.59
5675 6462 9.950496 ATCTCTCAAAAACAGATACTAACATGT 57.050 29.630 0.00 0.00 0.00 3.21
5676 6463 9.208022 TCTCTCAAAAACAGATACTAACATGTG 57.792 33.333 0.00 0.00 0.00 3.21
5677 6464 8.322906 TCTCAAAAACAGATACTAACATGTGG 57.677 34.615 0.00 0.00 0.00 4.17
5678 6465 8.154203 TCTCAAAAACAGATACTAACATGTGGA 58.846 33.333 0.00 0.00 0.00 4.02
5679 6466 8.862325 TCAAAAACAGATACTAACATGTGGAT 57.138 30.769 0.00 0.00 0.00 3.41
5680 6467 8.729756 TCAAAAACAGATACTAACATGTGGATG 58.270 33.333 0.00 0.00 35.49 3.51
5681 6468 8.514594 CAAAAACAGATACTAACATGTGGATGT 58.485 33.333 0.00 0.00 45.24 3.06
5682 6469 9.733556 AAAAACAGATACTAACATGTGGATGTA 57.266 29.630 0.00 1.13 42.30 2.29
5683 6470 8.718102 AAACAGATACTAACATGTGGATGTAC 57.282 34.615 0.00 0.00 42.30 2.90
5684 6471 7.661536 ACAGATACTAACATGTGGATGTACT 57.338 36.000 0.00 0.00 42.30 2.73
5722 6509 4.813027 TCGTGTATTCCTTTTACGAGCTT 58.187 39.130 0.00 0.00 38.65 3.74
5744 6531 4.005650 TCATTCAGGTGATCTTGTCAAGC 58.994 43.478 7.78 0.00 38.90 4.01
5778 6565 9.959749 GACTGTTTTGTTTGGACTTAATATCAA 57.040 29.630 0.00 0.00 0.00 2.57
5783 6570 8.770438 TTTGTTTGGACTTAATATCAAATGGC 57.230 30.769 0.00 0.00 32.73 4.40
5800 6587 1.292992 GGCAATTGCTAATGCTTGGC 58.707 50.000 28.42 5.36 42.20 4.52
5811 6598 0.674895 ATGCTTGGCGAGGTTCTCAC 60.675 55.000 3.44 0.00 0.00 3.51
5822 6609 1.355720 AGGTTCTCACCCCAGGAATTG 59.644 52.381 0.00 0.00 45.63 2.32
5825 6612 1.455822 TCTCACCCCAGGAATTGGTT 58.544 50.000 0.00 0.00 46.25 3.67
5826 6613 2.638325 TCTCACCCCAGGAATTGGTTA 58.362 47.619 0.00 0.00 46.25 2.85
5827 6614 3.197983 TCTCACCCCAGGAATTGGTTAT 58.802 45.455 0.00 0.00 46.25 1.89
5828 6615 3.053693 TCTCACCCCAGGAATTGGTTATG 60.054 47.826 0.00 0.00 46.25 1.90
5829 6616 1.756538 CACCCCAGGAATTGGTTATGC 59.243 52.381 0.00 0.00 46.25 3.14
5830 6617 1.645919 ACCCCAGGAATTGGTTATGCT 59.354 47.619 0.00 0.00 46.25 3.79
5831 6618 2.856231 ACCCCAGGAATTGGTTATGCTA 59.144 45.455 0.00 0.00 46.25 3.49
5832 6619 3.222603 CCCCAGGAATTGGTTATGCTAC 58.777 50.000 0.00 0.00 46.25 3.58
5867 6654 7.712797 TGGTTTTGCCAAAGTTGTTTTAAAAA 58.287 26.923 1.31 0.00 45.94 1.94
5878 6665 9.589111 AAAGTTGTTTTAAAAATATGTGTCCGT 57.411 25.926 1.31 0.00 0.00 4.69
5947 6744 2.811431 TGTTCGCCAATCAAACTTCGAT 59.189 40.909 0.00 0.00 0.00 3.59
5955 6752 5.334879 GCCAATCAAACTTCGATTGTACACT 60.335 40.000 10.90 0.00 45.41 3.55
5956 6753 6.128391 GCCAATCAAACTTCGATTGTACACTA 60.128 38.462 10.90 0.00 45.41 2.74
5957 6754 7.414098 GCCAATCAAACTTCGATTGTACACTAT 60.414 37.037 10.90 0.00 45.41 2.12
5958 6755 7.904977 CCAATCAAACTTCGATTGTACACTATG 59.095 37.037 10.90 0.00 45.41 2.23
5960 6757 7.956420 TCAAACTTCGATTGTACACTATGTT 57.044 32.000 0.00 0.00 0.00 2.71
5961 6758 9.647797 ATCAAACTTCGATTGTACACTATGTTA 57.352 29.630 0.00 0.00 0.00 2.41
5962 6759 9.135843 TCAAACTTCGATTGTACACTATGTTAG 57.864 33.333 0.00 0.00 0.00 2.34
5963 6760 8.922676 CAAACTTCGATTGTACACTATGTTAGT 58.077 33.333 0.00 0.00 40.28 2.24
5965 6762 9.565213 AACTTCGATTGTACACTATGTTAGTAC 57.435 33.333 0.00 0.00 37.23 2.73
5966 6763 8.733458 ACTTCGATTGTACACTATGTTAGTACA 58.267 33.333 0.00 0.00 44.38 2.90
6070 6867 6.579865 TCGGAAGATCAAATTAAGTACTCCC 58.420 40.000 0.00 0.00 33.31 4.30
6071 6868 6.383147 TCGGAAGATCAAATTAAGTACTCCCT 59.617 38.462 0.00 0.00 33.31 4.20
6072 6869 6.702282 CGGAAGATCAAATTAAGTACTCCCTC 59.298 42.308 0.00 0.00 0.00 4.30
6073 6870 6.993308 GGAAGATCAAATTAAGTACTCCCTCC 59.007 42.308 0.00 0.00 0.00 4.30
6074 6871 6.163135 AGATCAAATTAAGTACTCCCTCCG 57.837 41.667 0.00 0.00 0.00 4.63
6075 6872 5.661759 AGATCAAATTAAGTACTCCCTCCGT 59.338 40.000 0.00 0.00 0.00 4.69
6076 6873 5.750352 TCAAATTAAGTACTCCCTCCGTT 57.250 39.130 0.00 0.00 0.00 4.44
6077 6874 5.727434 TCAAATTAAGTACTCCCTCCGTTC 58.273 41.667 0.00 0.00 0.00 3.95
6078 6875 5.246656 TCAAATTAAGTACTCCCTCCGTTCA 59.753 40.000 0.00 0.00 0.00 3.18
6079 6876 4.732672 ATTAAGTACTCCCTCCGTTCAC 57.267 45.455 0.00 0.00 0.00 3.18
6080 6877 2.305858 AAGTACTCCCTCCGTTCACT 57.694 50.000 0.00 0.00 0.00 3.41
6081 6878 2.305858 AGTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
6082 6879 2.606378 AGTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
6083 6880 2.970640 AGTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
6084 6881 4.154942 AGTACTCCCTCCGTTCACTTTTA 58.845 43.478 0.00 0.00 0.00 1.52
6085 6882 4.776308 AGTACTCCCTCCGTTCACTTTTAT 59.224 41.667 0.00 0.00 0.00 1.40
6086 6883 5.954150 AGTACTCCCTCCGTTCACTTTTATA 59.046 40.000 0.00 0.00 0.00 0.98
6087 6884 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
6088 6885 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
6089 6886 5.247792 ACTCCCTCCGTTCACTTTTATAAGT 59.752 40.000 0.00 0.00 45.40 2.24
6090 6887 5.727434 TCCCTCCGTTCACTTTTATAAGTC 58.273 41.667 0.00 0.00 42.67 3.01
6091 6888 5.246656 TCCCTCCGTTCACTTTTATAAGTCA 59.753 40.000 0.00 0.00 42.67 3.41
6092 6889 6.070424 TCCCTCCGTTCACTTTTATAAGTCAT 60.070 38.462 0.00 0.00 42.67 3.06
6093 6890 6.598064 CCCTCCGTTCACTTTTATAAGTCATT 59.402 38.462 0.00 0.00 42.67 2.57
6094 6891 7.120726 CCCTCCGTTCACTTTTATAAGTCATTT 59.879 37.037 0.00 0.00 42.67 2.32
6095 6892 8.175716 CCTCCGTTCACTTTTATAAGTCATTTC 58.824 37.037 0.00 0.00 42.67 2.17
6096 6893 8.610248 TCCGTTCACTTTTATAAGTCATTTCA 57.390 30.769 0.00 0.00 42.67 2.69
6097 6894 8.717821 TCCGTTCACTTTTATAAGTCATTTCAG 58.282 33.333 0.00 0.00 42.67 3.02
6098 6895 8.717821 CCGTTCACTTTTATAAGTCATTTCAGA 58.282 33.333 0.00 0.00 42.67 3.27
6099 6896 9.530129 CGTTCACTTTTATAAGTCATTTCAGAC 57.470 33.333 0.00 0.00 42.67 3.51
6103 6900 9.612620 CACTTTTATAAGTCATTTCAGACAACC 57.387 33.333 0.00 0.00 42.67 3.77
6104 6901 9.349713 ACTTTTATAAGTCATTTCAGACAACCA 57.650 29.630 0.00 0.00 40.60 3.67
6108 6905 9.513906 TTATAAGTCATTTCAGACAACCAATCA 57.486 29.630 0.00 0.00 40.98 2.57
6109 6906 6.713762 AAGTCATTTCAGACAACCAATCAA 57.286 33.333 0.00 0.00 40.98 2.57
6110 6907 6.323203 AGTCATTTCAGACAACCAATCAAG 57.677 37.500 0.00 0.00 40.98 3.02
6111 6908 4.919754 GTCATTTCAGACAACCAATCAAGC 59.080 41.667 0.00 0.00 38.40 4.01
6112 6909 4.828939 TCATTTCAGACAACCAATCAAGCT 59.171 37.500 0.00 0.00 0.00 3.74
6113 6910 4.572985 TTTCAGACAACCAATCAAGCTG 57.427 40.909 0.00 0.00 0.00 4.24
6114 6911 3.213206 TCAGACAACCAATCAAGCTGT 57.787 42.857 0.00 0.00 0.00 4.40
6115 6912 3.554934 TCAGACAACCAATCAAGCTGTT 58.445 40.909 0.00 0.00 0.00 3.16
6116 6913 3.953612 TCAGACAACCAATCAAGCTGTTT 59.046 39.130 0.00 0.00 0.00 2.83
6117 6914 4.402155 TCAGACAACCAATCAAGCTGTTTT 59.598 37.500 0.00 0.00 0.00 2.43
6118 6915 5.592282 TCAGACAACCAATCAAGCTGTTTTA 59.408 36.000 0.00 0.00 0.00 1.52
6119 6916 5.687285 CAGACAACCAATCAAGCTGTTTTAC 59.313 40.000 0.00 0.00 0.00 2.01
6120 6917 5.359576 AGACAACCAATCAAGCTGTTTTACA 59.640 36.000 0.00 0.00 0.00 2.41
6121 6918 5.348164 ACAACCAATCAAGCTGTTTTACAC 58.652 37.500 0.00 0.00 0.00 2.90
6122 6919 5.105554 ACAACCAATCAAGCTGTTTTACACA 60.106 36.000 0.00 0.00 0.00 3.72
6123 6920 4.932146 ACCAATCAAGCTGTTTTACACAC 58.068 39.130 0.00 0.00 0.00 3.82
6124 6921 4.644685 ACCAATCAAGCTGTTTTACACACT 59.355 37.500 0.00 0.00 0.00 3.55
6125 6922 4.977963 CCAATCAAGCTGTTTTACACACTG 59.022 41.667 0.00 0.00 0.00 3.66
6126 6923 5.450412 CCAATCAAGCTGTTTTACACACTGT 60.450 40.000 0.00 0.00 0.00 3.55
6127 6924 4.875544 TCAAGCTGTTTTACACACTGTC 57.124 40.909 0.00 0.00 0.00 3.51
6128 6925 4.513442 TCAAGCTGTTTTACACACTGTCT 58.487 39.130 0.00 0.00 0.00 3.41
6129 6926 4.332543 TCAAGCTGTTTTACACACTGTCTG 59.667 41.667 0.00 0.00 0.00 3.51
6130 6927 4.137116 AGCTGTTTTACACACTGTCTGA 57.863 40.909 0.00 0.00 0.00 3.27
6131 6928 4.513442 AGCTGTTTTACACACTGTCTGAA 58.487 39.130 0.00 0.00 0.00 3.02
6132 6929 4.941263 AGCTGTTTTACACACTGTCTGAAA 59.059 37.500 0.00 0.00 0.00 2.69
6133 6930 5.590259 AGCTGTTTTACACACTGTCTGAAAT 59.410 36.000 0.00 0.00 0.00 2.17
6134 6931 5.682862 GCTGTTTTACACACTGTCTGAAATG 59.317 40.000 0.00 0.00 0.00 2.32
6135 6932 6.677920 GCTGTTTTACACACTGTCTGAAATGT 60.678 38.462 0.00 0.00 0.00 2.71
6136 6933 6.781138 TGTTTTACACACTGTCTGAAATGTC 58.219 36.000 0.00 0.00 0.00 3.06
6137 6934 6.597672 TGTTTTACACACTGTCTGAAATGTCT 59.402 34.615 0.00 0.00 0.00 3.41
6138 6935 7.766738 TGTTTTACACACTGTCTGAAATGTCTA 59.233 33.333 0.00 0.00 0.00 2.59
6139 6936 8.774586 GTTTTACACACTGTCTGAAATGTCTAT 58.225 33.333 0.00 0.00 0.00 1.98
6140 6937 9.990360 TTTTACACACTGTCTGAAATGTCTATA 57.010 29.630 0.00 0.00 0.00 1.31
6141 6938 9.639601 TTTACACACTGTCTGAAATGTCTATAG 57.360 33.333 0.00 0.00 0.00 1.31
6142 6939 6.102663 ACACACTGTCTGAAATGTCTATAGC 58.897 40.000 0.00 0.00 0.00 2.97
6143 6940 5.230936 CACACTGTCTGAAATGTCTATAGCG 59.769 44.000 0.00 0.00 0.00 4.26
6144 6941 4.208047 CACTGTCTGAAATGTCTATAGCGC 59.792 45.833 0.00 0.00 0.00 5.92
6145 6942 3.717707 TGTCTGAAATGTCTATAGCGCC 58.282 45.455 2.29 0.00 0.00 6.53
6146 6943 3.384789 TGTCTGAAATGTCTATAGCGCCT 59.615 43.478 2.29 0.00 0.00 5.52
6147 6944 4.141937 TGTCTGAAATGTCTATAGCGCCTT 60.142 41.667 2.29 0.00 0.00 4.35
6148 6945 5.068591 TGTCTGAAATGTCTATAGCGCCTTA 59.931 40.000 2.29 0.00 0.00 2.69
6149 6946 6.159988 GTCTGAAATGTCTATAGCGCCTTAT 58.840 40.000 2.29 0.00 0.00 1.73
6150 6947 7.039993 TGTCTGAAATGTCTATAGCGCCTTATA 60.040 37.037 2.29 0.00 0.00 0.98
6151 6948 7.813148 GTCTGAAATGTCTATAGCGCCTTATAA 59.187 37.037 2.29 0.00 0.00 0.98
6152 6949 8.364894 TCTGAAATGTCTATAGCGCCTTATAAA 58.635 33.333 2.29 0.00 0.00 1.40
6153 6950 8.896320 TGAAATGTCTATAGCGCCTTATAAAA 57.104 30.769 2.29 0.00 0.00 1.52
6154 6951 8.988934 TGAAATGTCTATAGCGCCTTATAAAAG 58.011 33.333 2.29 0.00 0.00 2.27
6155 6952 8.904099 AAATGTCTATAGCGCCTTATAAAAGT 57.096 30.769 2.29 0.00 0.00 2.66
6156 6953 9.991906 AAATGTCTATAGCGCCTTATAAAAGTA 57.008 29.630 2.29 0.00 0.00 2.24
6157 6954 9.991906 AATGTCTATAGCGCCTTATAAAAGTAA 57.008 29.630 2.29 0.00 0.00 2.24
6158 6955 9.991906 ATGTCTATAGCGCCTTATAAAAGTAAA 57.008 29.630 2.29 0.00 0.00 2.01
6159 6956 9.252962 TGTCTATAGCGCCTTATAAAAGTAAAC 57.747 33.333 2.29 0.00 0.00 2.01
6160 6957 9.252962 GTCTATAGCGCCTTATAAAAGTAAACA 57.747 33.333 2.29 0.00 0.00 2.83
6161 6958 9.472361 TCTATAGCGCCTTATAAAAGTAAACAG 57.528 33.333 2.29 0.00 0.00 3.16
6162 6959 9.472361 CTATAGCGCCTTATAAAAGTAAACAGA 57.528 33.333 2.29 0.00 0.00 3.41
6163 6960 6.663944 AGCGCCTTATAAAAGTAAACAGAG 57.336 37.500 2.29 0.00 0.00 3.35
6164 6961 5.585047 AGCGCCTTATAAAAGTAAACAGAGG 59.415 40.000 2.29 0.00 0.00 3.69
6165 6962 5.220796 GCGCCTTATAAAAGTAAACAGAGGG 60.221 44.000 0.00 0.00 0.00 4.30
6166 6963 6.110707 CGCCTTATAAAAGTAAACAGAGGGA 58.889 40.000 0.00 0.00 0.00 4.20
6167 6964 6.258068 CGCCTTATAAAAGTAAACAGAGGGAG 59.742 42.308 0.00 0.00 0.00 4.30
6168 6965 7.110810 GCCTTATAAAAGTAAACAGAGGGAGT 58.889 38.462 0.00 0.00 0.00 3.85
6169 6966 8.262933 GCCTTATAAAAGTAAACAGAGGGAGTA 58.737 37.037 0.00 0.00 0.00 2.59
6170 6967 9.597170 CCTTATAAAAGTAAACAGAGGGAGTAC 57.403 37.037 0.00 0.00 0.00 2.73
6240 7038 1.756538 CGGCTTTAGGGCATTTCCAAT 59.243 47.619 0.00 0.00 40.90 3.16
6246 7044 5.302823 GCTTTAGGGCATTTCCAATATCTGT 59.697 40.000 0.00 0.00 36.21 3.41
6248 7046 4.803329 AGGGCATTTCCAATATCTGTCT 57.197 40.909 0.00 0.00 36.21 3.41
6252 7050 4.098349 GGCATTTCCAATATCTGTCTGCAA 59.902 41.667 0.00 0.00 34.01 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.744666 AATATTTGCAGCATCAAATTGGC 57.255 34.783 17.40 0.00 42.21 4.52
3 4 9.613957 TTCAAAAATATTTGCAGCATCAAATTG 57.386 25.926 17.40 11.88 42.21 2.32
21 22 9.325150 CGTGTGATCGTTAGTATTTTCAAAAAT 57.675 29.630 6.04 6.04 41.24 1.82
22 23 8.336806 ACGTGTGATCGTTAGTATTTTCAAAAA 58.663 29.630 0.00 0.00 41.37 1.94
23 24 7.794810 CACGTGTGATCGTTAGTATTTTCAAAA 59.205 33.333 7.58 0.00 42.27 2.44
24 25 7.042590 ACACGTGTGATCGTTAGTATTTTCAAA 60.043 33.333 22.71 0.00 42.27 2.69
25 26 6.421501 ACACGTGTGATCGTTAGTATTTTCAA 59.578 34.615 22.71 0.00 42.27 2.69
26 27 5.921976 ACACGTGTGATCGTTAGTATTTTCA 59.078 36.000 22.71 0.00 42.27 2.69
27 28 6.385537 ACACGTGTGATCGTTAGTATTTTC 57.614 37.500 22.71 0.00 42.27 2.29
42 43 1.398739 TGCAAAACTACCACACGTGTG 59.601 47.619 36.13 36.13 45.23 3.82
43 44 1.740297 TGCAAAACTACCACACGTGT 58.260 45.000 17.22 17.22 0.00 4.49
44 45 2.096819 AGTTGCAAAACTACCACACGTG 59.903 45.455 15.48 15.48 0.00 4.49
45 46 2.353579 GAGTTGCAAAACTACCACACGT 59.646 45.455 0.00 0.00 32.22 4.49
46 47 2.598907 CGAGTTGCAAAACTACCACACG 60.599 50.000 0.00 0.00 32.22 4.49
47 48 2.353579 ACGAGTTGCAAAACTACCACAC 59.646 45.455 0.00 0.00 32.22 3.82
48 49 2.610374 GACGAGTTGCAAAACTACCACA 59.390 45.455 0.00 0.00 32.22 4.17
49 50 2.032290 GGACGAGTTGCAAAACTACCAC 60.032 50.000 0.00 0.00 32.22 4.16
50 51 2.215196 GGACGAGTTGCAAAACTACCA 58.785 47.619 0.00 0.00 32.22 3.25
51 52 2.032290 GTGGACGAGTTGCAAAACTACC 60.032 50.000 0.00 3.48 32.22 3.18
52 53 2.610374 TGTGGACGAGTTGCAAAACTAC 59.390 45.455 0.00 0.29 32.22 2.73
53 54 2.907634 TGTGGACGAGTTGCAAAACTA 58.092 42.857 0.00 0.00 32.22 2.24
54 55 1.745232 TGTGGACGAGTTGCAAAACT 58.255 45.000 0.00 0.00 35.34 2.66
55 56 2.384382 CATGTGGACGAGTTGCAAAAC 58.616 47.619 0.00 0.00 0.00 2.43
56 57 1.268999 GCATGTGGACGAGTTGCAAAA 60.269 47.619 0.00 0.00 33.58 2.44
57 58 0.310543 GCATGTGGACGAGTTGCAAA 59.689 50.000 0.00 0.00 33.58 3.68
58 59 0.817229 TGCATGTGGACGAGTTGCAA 60.817 50.000 0.00 0.00 40.11 4.08
59 60 1.227793 TGCATGTGGACGAGTTGCA 60.228 52.632 0.00 0.00 40.73 4.08
60 61 1.207593 GTGCATGTGGACGAGTTGC 59.792 57.895 0.00 0.00 0.00 4.17
67 68 0.385974 GCAAACTCGTGCATGTGGAC 60.386 55.000 12.32 0.00 44.29 4.02
68 69 1.948508 GCAAACTCGTGCATGTGGA 59.051 52.632 12.32 0.00 44.29 4.02
69 70 4.539152 GCAAACTCGTGCATGTGG 57.461 55.556 12.32 6.53 44.29 4.17
75 76 0.041312 ACATTCGTGCAAACTCGTGC 60.041 50.000 0.00 0.00 45.15 5.34
76 77 2.036217 CAACATTCGTGCAAACTCGTG 58.964 47.619 0.00 0.00 34.50 4.35
77 78 1.937223 TCAACATTCGTGCAAACTCGT 59.063 42.857 0.00 0.00 34.50 4.18
93 94 6.089820 CACAAATTATGCCTCAATGTGTCAAC 59.910 38.462 0.00 0.00 32.62 3.18
128 129 2.202878 CCATACACCAGCCCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
142 146 1.079127 CGAACTCTCCAACGCCCAT 60.079 57.895 0.00 0.00 0.00 4.00
221 225 2.904866 GGCTGTGTGGGCGAACAA 60.905 61.111 0.00 0.00 0.00 2.83
222 226 3.705934 TTGGCTGTGTGGGCGAACA 62.706 57.895 0.00 0.00 34.31 3.18
223 227 2.904866 TTGGCTGTGTGGGCGAAC 60.905 61.111 0.00 0.00 34.31 3.95
224 228 2.904866 GTTGGCTGTGTGGGCGAA 60.905 61.111 0.00 0.00 34.31 4.70
225 229 4.182433 TGTTGGCTGTGTGGGCGA 62.182 61.111 0.00 0.00 34.31 5.54
226 230 3.964875 GTGTTGGCTGTGTGGGCG 61.965 66.667 0.00 0.00 34.31 6.13
227 231 2.690653 TAGGTGTTGGCTGTGTGGGC 62.691 60.000 0.00 0.00 0.00 5.36
228 232 0.606401 CTAGGTGTTGGCTGTGTGGG 60.606 60.000 0.00 0.00 0.00 4.61
299 333 6.747931 GCAGTTTGCAGTTGTCATCCAACA 62.748 45.833 7.82 0.00 46.57 3.33
300 334 4.340400 GCAGTTTGCAGTTGTCATCCAAC 61.340 47.826 0.00 0.00 43.95 3.77
314 348 0.509499 TACGCGTAACTGCAGTTTGC 59.491 50.000 35.20 32.79 45.29 3.68
315 349 1.459624 CGTACGCGTAACTGCAGTTTG 60.460 52.381 35.20 27.12 39.31 2.93
316 350 0.780002 CGTACGCGTAACTGCAGTTT 59.220 50.000 35.20 20.18 39.31 2.66
366 400 0.800683 TGCCGTCTAGCAACGAATCG 60.801 55.000 0.00 0.00 45.37 3.34
540 622 8.046708 TGTCATGTCTAATTTATGGTAGTTGCT 58.953 33.333 0.00 0.00 0.00 3.91
597 679 7.220741 TGGCAAATGTAGTTGTAAAAGCATA 57.779 32.000 0.00 0.00 0.00 3.14
688 775 2.359107 CACATGTCCTGGCGCAGT 60.359 61.111 10.83 0.00 0.00 4.40
725 813 1.735376 ATCTCTATCCCGCGCGTGTT 61.735 55.000 29.95 15.45 0.00 3.32
750 839 2.546368 GTGTCATGCGTCCAACAAGTAA 59.454 45.455 0.00 0.00 0.00 2.24
764 854 0.642291 CGCAGCTACTTCGTGTCATG 59.358 55.000 0.00 0.00 0.00 3.07
765 855 3.036026 CGCAGCTACTTCGTGTCAT 57.964 52.632 0.00 0.00 0.00 3.06
792 882 5.065090 TGGACGAACATTAGAATTGCTCATG 59.935 40.000 0.00 0.00 34.95 3.07
793 883 5.065218 GTGGACGAACATTAGAATTGCTCAT 59.935 40.000 0.00 0.00 0.00 2.90
796 886 4.154195 GTGTGGACGAACATTAGAATTGCT 59.846 41.667 0.00 0.00 31.49 3.91
813 903 1.295101 CATACGGGCTGTGTGTGGA 59.705 57.895 14.41 0.00 35.19 4.02
844 936 6.074034 CGTCAACATATTATACGTGGCATGAA 60.074 38.462 14.82 0.00 0.00 2.57
865 957 4.577693 GTGTGGTATACTAGACATCCGTCA 59.422 45.833 11.08 0.00 45.23 4.35
895 987 4.829064 AAATATTGCATGCCGATAACGT 57.171 36.364 16.68 1.67 37.88 3.99
908 1000 1.570813 GCCTCCCGCAAAAATATTGC 58.429 50.000 3.16 3.16 41.71 3.56
920 1012 0.966920 ATCGTTATACAGGCCTCCCG 59.033 55.000 0.00 0.00 35.76 5.14
921 1013 2.550208 CCAATCGTTATACAGGCCTCCC 60.550 54.545 0.00 0.00 0.00 4.30
922 1014 2.367567 TCCAATCGTTATACAGGCCTCC 59.632 50.000 0.00 0.00 0.00 4.30
923 1015 3.746045 TCCAATCGTTATACAGGCCTC 57.254 47.619 0.00 0.00 0.00 4.70
924 1016 4.706842 AATCCAATCGTTATACAGGCCT 57.293 40.909 0.00 0.00 0.00 5.19
925 1017 5.302360 TGTAATCCAATCGTTATACAGGCC 58.698 41.667 0.00 0.00 0.00 5.19
926 1018 5.107065 GCTGTAATCCAATCGTTATACAGGC 60.107 44.000 11.40 2.60 40.17 4.85
927 1019 5.989168 TGCTGTAATCCAATCGTTATACAGG 59.011 40.000 11.40 0.00 40.17 4.00
928 1020 6.478673 TGTGCTGTAATCCAATCGTTATACAG 59.521 38.462 6.42 6.42 41.81 2.74
929 1021 6.342111 TGTGCTGTAATCCAATCGTTATACA 58.658 36.000 0.00 0.00 0.00 2.29
930 1022 6.838198 TGTGCTGTAATCCAATCGTTATAC 57.162 37.500 0.00 0.00 0.00 1.47
931 1023 7.441836 AGATGTGCTGTAATCCAATCGTTATA 58.558 34.615 0.00 0.00 0.00 0.98
932 1024 6.291377 AGATGTGCTGTAATCCAATCGTTAT 58.709 36.000 0.00 0.00 0.00 1.89
933 1025 5.670485 AGATGTGCTGTAATCCAATCGTTA 58.330 37.500 0.00 0.00 0.00 3.18
934 1026 4.517285 AGATGTGCTGTAATCCAATCGTT 58.483 39.130 0.00 0.00 0.00 3.85
935 1027 4.142609 AGATGTGCTGTAATCCAATCGT 57.857 40.909 0.00 0.00 0.00 3.73
936 1028 5.532557 TCTAGATGTGCTGTAATCCAATCG 58.467 41.667 0.00 0.00 0.00 3.34
937 1029 6.753180 TCTCTAGATGTGCTGTAATCCAATC 58.247 40.000 0.00 0.00 0.00 2.67
938 1030 6.737720 TCTCTAGATGTGCTGTAATCCAAT 57.262 37.500 0.00 0.00 0.00 3.16
939 1031 6.519382 CATCTCTAGATGTGCTGTAATCCAA 58.481 40.000 11.14 0.00 45.10 3.53
940 1032 6.094193 CATCTCTAGATGTGCTGTAATCCA 57.906 41.667 11.14 0.00 45.10 3.41
967 1062 3.772025 GGAGTCTAGCACATGCCCTATAT 59.228 47.826 0.00 0.00 43.38 0.86
972 1067 0.105778 GAGGAGTCTAGCACATGCCC 59.894 60.000 0.00 0.00 43.38 5.36
1033 1136 3.800833 TGGATGCAGCTGCGGGAT 61.801 61.111 32.11 21.06 45.83 3.85
1046 1149 0.538516 CGGAGATCTCTCGGGTGGAT 60.539 60.000 21.81 0.00 43.76 3.41
1129 1232 1.143073 AGGAAAAAGTGAAGCTCGGGT 59.857 47.619 0.00 0.00 0.00 5.28
1140 1243 0.106419 TTGGGCGTGGAGGAAAAAGT 60.106 50.000 0.00 0.00 0.00 2.66
1145 1248 4.323477 CCGTTGGGCGTGGAGGAA 62.323 66.667 0.00 0.00 39.32 3.36
1304 1407 2.159128 CGCACAGACATGAGAGGAGATT 60.159 50.000 0.00 0.00 0.00 2.40
1305 1408 1.408340 CGCACAGACATGAGAGGAGAT 59.592 52.381 0.00 0.00 0.00 2.75
1307 1410 0.529833 ACGCACAGACATGAGAGGAG 59.470 55.000 0.00 0.00 0.00 3.69
1308 1411 0.244721 CACGCACAGACATGAGAGGA 59.755 55.000 0.00 0.00 0.00 3.71
1317 1420 2.628106 CACTGCACACGCACAGAC 59.372 61.111 0.00 0.00 45.36 3.51
1331 1434 1.819288 ACTGCTCTGTATACACGCACT 59.181 47.619 16.93 8.88 0.00 4.40
1350 1453 4.345257 TCTTAATAGCCTCCCTGTGATCAC 59.655 45.833 19.27 19.27 0.00 3.06
1360 1463 3.797559 AGCCCATTCTTAATAGCCTCC 57.202 47.619 0.00 0.00 0.00 4.30
1361 1464 5.380900 AGAAAGCCCATTCTTAATAGCCTC 58.619 41.667 0.00 0.00 36.23 4.70
1422 1531 8.291740 CACTCTTGAAATGTATGTTGTGATGAA 58.708 33.333 0.00 0.00 0.00 2.57
1441 1550 5.869888 GTCACCCAAGATTAGTACACTCTTG 59.130 44.000 18.11 18.11 43.46 3.02
1442 1551 5.542635 TGTCACCCAAGATTAGTACACTCTT 59.457 40.000 0.00 0.00 0.00 2.85
1480 1591 6.924111 TGGAATTTAGGTTCAGAAGCATTTC 58.076 36.000 14.73 10.38 0.00 2.17
1509 1620 8.834004 TTTACTAGTAATGTATGAGGTCAGGT 57.166 34.615 15.92 0.00 0.00 4.00
1528 1639 7.630082 AGCATCCTCAACCTGTATTTTTACTA 58.370 34.615 0.00 0.00 0.00 1.82
1532 1643 5.904362 GAGCATCCTCAACCTGTATTTTT 57.096 39.130 0.00 0.00 38.03 1.94
1572 1683 6.224584 ACAAGAAAGACTAGTAAAGGTGAGC 58.775 40.000 0.00 0.00 0.00 4.26
1594 1705 7.202016 GACAAAATCACTTGTCCTGATTACA 57.798 36.000 5.36 0.00 46.29 2.41
1616 1728 2.869897 TGTTGCTTCGTTTGGTTTGAC 58.130 42.857 0.00 0.00 0.00 3.18
1622 1734 9.546909 GAATCATATATATGTTGCTTCGTTTGG 57.453 33.333 19.78 0.00 35.26 3.28
1634 1746 7.201670 CGCCAAGCACATGAATCATATATATGT 60.202 37.037 19.78 4.32 35.26 2.29
1637 1749 6.092533 CACGCCAAGCACATGAATCATATATA 59.907 38.462 0.00 0.00 0.00 0.86
1641 1753 2.355444 CACGCCAAGCACATGAATCATA 59.645 45.455 0.00 0.00 0.00 2.15
1642 1754 1.133598 CACGCCAAGCACATGAATCAT 59.866 47.619 0.00 0.00 0.00 2.45
1643 1755 0.522626 CACGCCAAGCACATGAATCA 59.477 50.000 0.00 0.00 0.00 2.57
1693 1805 1.003355 GCAGAGCACACCCAAGCTA 60.003 57.895 0.00 0.00 42.04 3.32
1792 1904 2.359478 GTTACGGTGGCCACTGGG 60.359 66.667 40.68 28.38 41.89 4.45
1793 1905 0.536460 AAAGTTACGGTGGCCACTGG 60.536 55.000 40.68 30.60 41.89 4.00
1794 1906 1.314730 AAAAGTTACGGTGGCCACTG 58.685 50.000 37.89 37.89 43.20 3.66
1797 1909 1.405821 CACAAAAAGTTACGGTGGCCA 59.594 47.619 0.00 0.00 0.00 5.36
1805 1917 3.359654 CGGCACACTCACAAAAAGTTAC 58.640 45.455 0.00 0.00 0.00 2.50
1826 1938 0.171903 CCATGCTTTACTGGTGCAGC 59.828 55.000 9.47 9.47 40.18 5.25
1833 1945 3.953612 TGGCCTATTTCCATGCTTTACTG 59.046 43.478 3.32 0.00 0.00 2.74
1836 1948 3.704061 GGTTGGCCTATTTCCATGCTTTA 59.296 43.478 3.32 0.00 32.92 1.85
1842 1954 1.645919 ACCTGGTTGGCCTATTTCCAT 59.354 47.619 3.32 0.00 40.22 3.41
1858 1970 2.017049 CCAGCGGAATTTAAGGACCTG 58.983 52.381 0.00 0.00 0.00 4.00
1869 1981 1.421646 AGCCTTTATAGCCAGCGGAAT 59.578 47.619 0.00 0.00 0.00 3.01
1870 1982 0.837272 AGCCTTTATAGCCAGCGGAA 59.163 50.000 0.00 0.00 0.00 4.30
1885 1997 4.457257 GCTTTTAACTCACTCATGAAGCCT 59.543 41.667 0.00 0.00 33.30 4.58
1891 2003 6.854892 CAGTCTTTGCTTTTAACTCACTCATG 59.145 38.462 0.00 0.00 0.00 3.07
1895 2007 4.580580 CCCAGTCTTTGCTTTTAACTCACT 59.419 41.667 0.00 0.00 0.00 3.41
1903 2015 4.281657 AGTTTCTCCCAGTCTTTGCTTTT 58.718 39.130 0.00 0.00 0.00 2.27
1915 2027 6.121776 TGCTTCTTTACATAGTTTCTCCCA 57.878 37.500 0.00 0.00 0.00 4.37
1916 2028 5.065346 GCTGCTTCTTTACATAGTTTCTCCC 59.935 44.000 0.00 0.00 0.00 4.30
1935 2047 2.749621 CCCAACGATTTCTTAAGCTGCT 59.250 45.455 0.00 0.00 0.00 4.24
1940 2052 7.786178 TGTATCATCCCAACGATTTCTTAAG 57.214 36.000 0.00 0.00 0.00 1.85
1964 2076 9.347240 AGCTTTCATGCTGAATATATAGTGTTT 57.653 29.630 0.00 0.00 42.33 2.83
1968 2080 8.373981 ACTGAGCTTTCATGCTGAATATATAGT 58.626 33.333 0.00 0.00 44.17 2.12
2003 2115 7.946918 TTGAACGATTTTTGAATATACAGCG 57.053 32.000 0.00 0.00 0.00 5.18
2086 2198 6.142817 GTCAAACAGGACACACAATACATTC 58.857 40.000 0.00 0.00 37.73 2.67
2173 2285 3.969553 AGAGGAAATGGGAGTTTAAGGC 58.030 45.455 0.00 0.00 0.00 4.35
2214 2326 0.251653 AGCTGACGGGTGAGAAGGTA 60.252 55.000 0.00 0.00 0.00 3.08
2216 2328 1.216710 GAGCTGACGGGTGAGAAGG 59.783 63.158 0.00 0.00 0.00 3.46
2219 2331 2.680352 GGGAGCTGACGGGTGAGA 60.680 66.667 0.00 0.00 0.00 3.27
2231 2343 6.060788 AGAATTAGAGATGTTGAATGGGAGC 58.939 40.000 0.00 0.00 0.00 4.70
2256 2368 5.174398 GCAAGACAGTGTGTTTGATTTCATG 59.826 40.000 17.13 1.10 0.00 3.07
2257 2369 5.284079 GCAAGACAGTGTGTTTGATTTCAT 58.716 37.500 17.13 0.00 0.00 2.57
2258 2370 4.671377 GCAAGACAGTGTGTTTGATTTCA 58.329 39.130 17.13 0.00 0.00 2.69
2259 2371 3.725740 CGCAAGACAGTGTGTTTGATTTC 59.274 43.478 17.13 3.24 43.02 2.17
2343 2455 2.281484 GCTGCCGTTCACCCTCAA 60.281 61.111 0.00 0.00 0.00 3.02
2411 2523 1.668151 GGCGGTGAGGAGTGTGTTC 60.668 63.158 0.00 0.00 0.00 3.18
2470 2582 1.676678 CCGCGGGGAAGAGAGATTCA 61.677 60.000 20.10 0.00 34.06 2.57
2489 2601 2.570135 GAATTCAGACAGGAGGATGGC 58.430 52.381 0.00 0.00 0.00 4.40
2508 2620 0.613853 CAGTACGGGAAGTGAGGGGA 60.614 60.000 0.00 0.00 0.00 4.81
2542 2654 2.046411 ATCCCGATTGCACGCACA 60.046 55.556 0.00 0.00 0.00 4.57
2543 2655 2.709475 GATCCCGATTGCACGCAC 59.291 61.111 0.00 0.00 0.00 5.34
2550 2662 2.916502 TTCCACGCCGATCCCGATTG 62.917 60.000 7.35 0.00 38.22 2.67
2682 2794 3.181516 GCAAGAAGCGAACATTACTGAGG 60.182 47.826 0.00 0.00 0.00 3.86
2794 2906 2.016318 CAAGGAACACAGTGAACAGCA 58.984 47.619 7.81 0.00 0.00 4.41
2859 2971 0.468226 ACTCGGACAACTCCTGCAAA 59.532 50.000 0.00 0.00 33.79 3.68
3045 3157 0.519175 CACATTACTGCTGCGCGAAC 60.519 55.000 12.10 0.00 0.00 3.95
3048 3160 1.911293 AACCACATTACTGCTGCGCG 61.911 55.000 0.00 0.00 0.00 6.86
3050 3162 1.266718 ACAAACCACATTACTGCTGCG 59.733 47.619 0.00 0.00 0.00 5.18
3061 3173 5.359576 AGCAGACATTTAAAGACAAACCACA 59.640 36.000 0.00 0.00 0.00 4.17
3078 3190 3.300388 CAGAGAGGGGTAATAGCAGACA 58.700 50.000 0.00 0.00 0.00 3.41
3090 3202 2.165845 CGTAACACCTAACAGAGAGGGG 59.834 54.545 0.00 0.00 43.79 4.79
3104 3216 4.328983 CCACAGATCACAATACCGTAACAC 59.671 45.833 0.00 0.00 0.00 3.32
3147 3262 3.005155 AGAAAACAGCAGTTCTTCCATGC 59.995 43.478 0.00 0.00 36.84 4.06
3244 3360 8.340757 ACTCAAAATTAAATACCCCAGGTGATA 58.659 33.333 0.00 0.00 36.19 2.15
3297 3415 7.634671 ATGATTTTGTGATCAAGTCATAGCA 57.365 32.000 0.00 0.00 39.33 3.49
3376 3494 7.895759 AGAGAAGCAGGATGATAAGATAACTC 58.104 38.462 0.00 0.00 39.69 3.01
3587 3716 6.595716 AGCAGATGTCTATTTTACCACAGAAC 59.404 38.462 0.00 0.00 0.00 3.01
3708 3838 6.370442 TGAACAAATAGACCAATAAGACACCG 59.630 38.462 0.00 0.00 0.00 4.94
3734 3864 4.154918 CAGAAATTCCAGACTTGGTAGCAC 59.845 45.833 0.00 0.00 45.26 4.40
3759 3889 6.009589 TGAACTGGCTTATGAAAATGGAAGA 58.990 36.000 0.00 0.00 0.00 2.87
3763 3893 7.098477 TCAATTGAACTGGCTTATGAAAATGG 58.902 34.615 5.45 0.00 0.00 3.16
3819 3949 8.498575 TCCAATACCAATACAGATGTTTGGATA 58.501 33.333 22.49 15.23 38.43 2.59
3882 4012 0.179103 GGGCTTGGAATTTGCATCGG 60.179 55.000 0.00 0.00 0.00 4.18
3884 4014 0.903942 TGGGGCTTGGAATTTGCATC 59.096 50.000 0.00 0.00 0.00 3.91
3896 4026 5.074377 TGGATATGTATGTATTGTGGGGCTT 59.926 40.000 0.00 0.00 0.00 4.35
3903 4033 7.041372 GGCTTCGTTTGGATATGTATGTATTGT 60.041 37.037 0.00 0.00 0.00 2.71
3970 4100 1.553690 ATTGTGGGACGGAGGGAGTG 61.554 60.000 0.00 0.00 0.00 3.51
3974 4104 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4011 4141 4.474226 AAGAGAGTTTTGCAAGCTAACG 57.526 40.909 0.00 0.00 0.00 3.18
4016 4146 6.749118 CCACAATATAAGAGAGTTTTGCAAGC 59.251 38.462 0.00 0.00 0.00 4.01
4027 4157 3.895656 CCTCCGTCCCACAATATAAGAGA 59.104 47.826 0.00 0.00 0.00 3.10
4237 4698 9.481800 GCGAAGTTATTGTTTGTAAGGTAATAC 57.518 33.333 0.00 0.00 0.00 1.89
4239 4700 8.101654 TGCGAAGTTATTGTTTGTAAGGTAAT 57.898 30.769 0.00 0.00 0.00 1.89
4241 4702 7.675962 ATGCGAAGTTATTGTTTGTAAGGTA 57.324 32.000 0.00 0.00 0.00 3.08
4277 4738 6.096141 TCAGTTGCCTTCAGATAAACAAACAA 59.904 34.615 0.00 0.00 0.00 2.83
4380 4841 8.908903 TGACAAACTATTTTCATGGTGTTAACT 58.091 29.630 7.22 0.00 0.00 2.24
4381 4842 9.691362 ATGACAAACTATTTTCATGGTGTTAAC 57.309 29.630 0.00 0.00 0.00 2.01
4383 4844 9.689976 CAATGACAAACTATTTTCATGGTGTTA 57.310 29.630 0.00 0.00 0.00 2.41
4384 4845 7.171337 GCAATGACAAACTATTTTCATGGTGTT 59.829 33.333 0.00 0.00 0.00 3.32
4388 4862 7.092079 TCAGCAATGACAAACTATTTTCATGG 58.908 34.615 0.00 0.00 0.00 3.66
4646 5152 6.238211 CCAATAATCCGCATCCGATCTATTTC 60.238 42.308 0.00 0.00 36.29 2.17
5159 5669 4.082787 ACGACCATTTATGCTTGTTTCAGG 60.083 41.667 0.00 0.00 0.00 3.86
5193 5707 4.826733 TCACAATGTCAGTGCCAACTTAAT 59.173 37.500 0.00 0.00 36.93 1.40
5196 5710 2.653726 TCACAATGTCAGTGCCAACTT 58.346 42.857 0.00 0.00 36.93 2.66
5220 5734 6.966632 CCATTACACGGAACAACATTATTCAG 59.033 38.462 0.00 0.00 0.00 3.02
5322 6082 2.785562 TGTAATACCACACACAAGGCC 58.214 47.619 0.00 0.00 0.00 5.19
5323 6083 4.261801 AGATGTAATACCACACACAAGGC 58.738 43.478 0.00 0.00 0.00 4.35
5324 6084 4.876107 GGAGATGTAATACCACACACAAGG 59.124 45.833 0.00 0.00 0.00 3.61
5325 6085 5.351465 GTGGAGATGTAATACCACACACAAG 59.649 44.000 0.00 0.00 46.26 3.16
5326 6086 5.242434 GTGGAGATGTAATACCACACACAA 58.758 41.667 0.00 0.00 46.26 3.33
5401 6165 1.812922 GGCGAGGCATCTGTCACTG 60.813 63.158 0.00 0.00 0.00 3.66
5412 6176 4.821589 CTCCGGAAGTGGCGAGGC 62.822 72.222 5.23 0.00 0.00 4.70
5413 6177 4.821589 GCTCCGGAAGTGGCGAGG 62.822 72.222 5.23 0.00 0.00 4.63
5457 6221 0.323451 TCTCAGGAAGTGGCGAGCTA 60.323 55.000 0.00 0.00 0.00 3.32
5458 6222 1.607756 TCTCAGGAAGTGGCGAGCT 60.608 57.895 0.00 0.00 0.00 4.09
5459 6223 1.446966 GTCTCAGGAAGTGGCGAGC 60.447 63.158 0.00 0.00 0.00 5.03
5460 6224 1.216710 GGTCTCAGGAAGTGGCGAG 59.783 63.158 0.00 0.00 0.00 5.03
5461 6225 1.228894 AGGTCTCAGGAAGTGGCGA 60.229 57.895 0.00 0.00 0.00 5.54
5462 6226 1.216710 GAGGTCTCAGGAAGTGGCG 59.783 63.158 0.00 0.00 0.00 5.69
5491 6255 5.859114 GCACGTCATCATCTAGTTACCATAG 59.141 44.000 0.00 0.00 0.00 2.23
5512 6276 2.400896 AATCCCGCAACAACGTGCAC 62.401 55.000 6.82 6.82 45.19 4.57
5513 6277 1.729470 AAATCCCGCAACAACGTGCA 61.729 50.000 0.00 0.00 45.19 4.57
5651 6416 8.446273 CCACATGTTAGTATCTGTTTTTGAGAG 58.554 37.037 0.00 0.00 0.00 3.20
5670 6457 7.121168 CCACTGAAAATTAGTACATCCACATGT 59.879 37.037 0.00 0.00 45.73 3.21
5672 6459 6.095440 GCCACTGAAAATTAGTACATCCACAT 59.905 38.462 0.00 0.00 0.00 3.21
5673 6460 5.414454 GCCACTGAAAATTAGTACATCCACA 59.586 40.000 0.00 0.00 0.00 4.17
5674 6461 5.447279 CGCCACTGAAAATTAGTACATCCAC 60.447 44.000 0.00 0.00 0.00 4.02
5675 6462 4.634004 CGCCACTGAAAATTAGTACATCCA 59.366 41.667 0.00 0.00 0.00 3.41
5676 6463 4.634443 ACGCCACTGAAAATTAGTACATCC 59.366 41.667 0.00 0.00 0.00 3.51
5677 6464 5.796350 ACGCCACTGAAAATTAGTACATC 57.204 39.130 0.00 0.00 0.00 3.06
5678 6465 5.163893 CGAACGCCACTGAAAATTAGTACAT 60.164 40.000 0.00 0.00 0.00 2.29
5679 6466 4.150980 CGAACGCCACTGAAAATTAGTACA 59.849 41.667 0.00 0.00 0.00 2.90
5680 6467 4.151157 ACGAACGCCACTGAAAATTAGTAC 59.849 41.667 0.00 0.00 0.00 2.73
5681 6468 4.150980 CACGAACGCCACTGAAAATTAGTA 59.849 41.667 0.00 0.00 0.00 1.82
5682 6469 3.059188 CACGAACGCCACTGAAAATTAGT 60.059 43.478 0.00 0.00 0.00 2.24
5683 6470 3.059188 ACACGAACGCCACTGAAAATTAG 60.059 43.478 0.00 0.00 0.00 1.73
5684 6471 2.873472 ACACGAACGCCACTGAAAATTA 59.127 40.909 0.00 0.00 0.00 1.40
5722 6509 4.005650 GCTTGACAAGATCACCTGAATGA 58.994 43.478 19.51 0.00 36.92 2.57
5744 6531 5.118510 GTCCAAACAAAACAGTCAACACTTG 59.881 40.000 0.00 0.00 0.00 3.16
5778 6565 3.537580 CCAAGCATTAGCAATTGCCATT 58.462 40.909 26.45 11.28 45.49 3.16
5783 6570 2.456989 CTCGCCAAGCATTAGCAATTG 58.543 47.619 0.00 0.00 45.49 2.32
5800 6587 1.192146 TTCCTGGGGTGAGAACCTCG 61.192 60.000 0.00 0.00 32.35 4.63
5829 6616 3.498082 GCAAAACCAAAGGTATGCGTAG 58.502 45.455 10.00 0.00 38.32 3.51
5830 6617 2.229302 GGCAAAACCAAAGGTATGCGTA 59.771 45.455 15.99 0.00 44.38 4.42
5831 6618 1.000394 GGCAAAACCAAAGGTATGCGT 60.000 47.619 15.99 0.00 44.38 5.24
5832 6619 1.708822 GGCAAAACCAAAGGTATGCG 58.291 50.000 15.99 0.00 44.38 4.73
5867 6654 4.687901 TGGATGAATCACGGACACATAT 57.312 40.909 0.00 0.00 0.00 1.78
5878 6665 8.888836 ATCCTGCATAATTATTGGATGAATCA 57.111 30.769 17.12 0.00 33.59 2.57
5970 6767 9.595823 GGCTACTGATTTTCTTACATGTAACTA 57.404 33.333 14.35 3.21 0.00 2.24
6046 6843 6.383147 AGGGAGTACTTAATTTGATCTTCCGA 59.617 38.462 0.00 0.00 0.00 4.55
6065 6862 5.247792 ACTTATAAAAGTGAACGGAGGGAGT 59.752 40.000 0.00 0.00 44.40 3.85
6068 6865 5.484715 TGACTTATAAAAGTGAACGGAGGG 58.515 41.667 0.00 0.00 46.09 4.30
6069 6866 7.611213 AATGACTTATAAAAGTGAACGGAGG 57.389 36.000 0.00 0.00 46.09 4.30
6070 6867 8.717821 TGAAATGACTTATAAAAGTGAACGGAG 58.282 33.333 0.00 0.00 46.09 4.63
6071 6868 8.610248 TGAAATGACTTATAAAAGTGAACGGA 57.390 30.769 0.00 0.00 46.09 4.69
6072 6869 8.717821 TCTGAAATGACTTATAAAAGTGAACGG 58.282 33.333 0.00 0.00 46.09 4.44
6073 6870 9.530129 GTCTGAAATGACTTATAAAAGTGAACG 57.470 33.333 0.00 0.00 46.09 3.95
6077 6874 9.612620 GGTTGTCTGAAATGACTTATAAAAGTG 57.387 33.333 0.00 0.00 46.09 3.16
6082 6879 9.513906 TGATTGGTTGTCTGAAATGACTTATAA 57.486 29.630 0.00 0.00 37.79 0.98
6083 6880 9.513906 TTGATTGGTTGTCTGAAATGACTTATA 57.486 29.630 0.00 0.00 37.79 0.98
6084 6881 8.408043 TTGATTGGTTGTCTGAAATGACTTAT 57.592 30.769 0.00 0.00 37.79 1.73
6085 6882 7.522073 GCTTGATTGGTTGTCTGAAATGACTTA 60.522 37.037 0.00 0.00 37.79 2.24
6086 6883 6.713762 TTGATTGGTTGTCTGAAATGACTT 57.286 33.333 0.00 0.00 37.79 3.01
6087 6884 5.278660 GCTTGATTGGTTGTCTGAAATGACT 60.279 40.000 0.00 0.00 37.79 3.41
6088 6885 4.919754 GCTTGATTGGTTGTCTGAAATGAC 59.080 41.667 0.00 0.00 37.47 3.06
6089 6886 4.828939 AGCTTGATTGGTTGTCTGAAATGA 59.171 37.500 0.00 0.00 0.00 2.57
6090 6887 4.921515 CAGCTTGATTGGTTGTCTGAAATG 59.078 41.667 0.00 0.00 0.00 2.32
6091 6888 4.586001 ACAGCTTGATTGGTTGTCTGAAAT 59.414 37.500 0.00 0.00 0.00 2.17
6092 6889 3.953612 ACAGCTTGATTGGTTGTCTGAAA 59.046 39.130 0.00 0.00 0.00 2.69
6093 6890 3.554934 ACAGCTTGATTGGTTGTCTGAA 58.445 40.909 0.00 0.00 0.00 3.02
6094 6891 3.213206 ACAGCTTGATTGGTTGTCTGA 57.787 42.857 0.00 0.00 0.00 3.27
6095 6892 3.996150 AACAGCTTGATTGGTTGTCTG 57.004 42.857 0.00 0.00 0.00 3.51
6096 6893 5.359576 TGTAAAACAGCTTGATTGGTTGTCT 59.640 36.000 0.00 0.00 0.00 3.41
6097 6894 5.458779 GTGTAAAACAGCTTGATTGGTTGTC 59.541 40.000 0.00 0.00 0.00 3.18
6098 6895 5.105554 TGTGTAAAACAGCTTGATTGGTTGT 60.106 36.000 0.00 0.00 33.78 3.32
6099 6896 5.231991 GTGTGTAAAACAGCTTGATTGGTTG 59.768 40.000 0.00 0.00 40.26 3.77
6100 6897 5.127031 AGTGTGTAAAACAGCTTGATTGGTT 59.873 36.000 0.00 0.00 40.26 3.67
6101 6898 4.644685 AGTGTGTAAAACAGCTTGATTGGT 59.355 37.500 0.00 0.00 40.26 3.67
6102 6899 4.977963 CAGTGTGTAAAACAGCTTGATTGG 59.022 41.667 0.00 0.00 40.26 3.16
6103 6900 5.581605 ACAGTGTGTAAAACAGCTTGATTG 58.418 37.500 0.00 0.00 40.26 2.67
6104 6901 5.590259 AGACAGTGTGTAAAACAGCTTGATT 59.410 36.000 0.00 0.00 40.26 2.57
6105 6902 5.008019 CAGACAGTGTGTAAAACAGCTTGAT 59.992 40.000 0.00 0.00 40.26 2.57
6106 6903 4.332543 CAGACAGTGTGTAAAACAGCTTGA 59.667 41.667 0.00 0.00 40.26 3.02
6107 6904 4.332543 TCAGACAGTGTGTAAAACAGCTTG 59.667 41.667 0.00 0.00 40.26 4.01
6108 6905 4.513442 TCAGACAGTGTGTAAAACAGCTT 58.487 39.130 0.00 0.00 40.26 3.74
6109 6906 4.137116 TCAGACAGTGTGTAAAACAGCT 57.863 40.909 0.00 0.00 40.26 4.24
6110 6907 4.875544 TTCAGACAGTGTGTAAAACAGC 57.124 40.909 0.00 0.00 40.26 4.40
6111 6908 6.785191 ACATTTCAGACAGTGTGTAAAACAG 58.215 36.000 0.00 0.00 40.26 3.16
6112 6909 6.597672 AGACATTTCAGACAGTGTGTAAAACA 59.402 34.615 0.00 0.00 36.04 2.83
6113 6910 7.016361 AGACATTTCAGACAGTGTGTAAAAC 57.984 36.000 0.00 0.00 0.00 2.43
6114 6911 8.902540 ATAGACATTTCAGACAGTGTGTAAAA 57.097 30.769 0.00 0.00 0.00 1.52
6115 6912 9.639601 CTATAGACATTTCAGACAGTGTGTAAA 57.360 33.333 0.00 0.00 0.00 2.01
6116 6913 7.759886 GCTATAGACATTTCAGACAGTGTGTAA 59.240 37.037 0.00 0.00 0.00 2.41
6117 6914 7.258441 GCTATAGACATTTCAGACAGTGTGTA 58.742 38.462 0.00 0.00 0.00 2.90
6118 6915 6.102663 GCTATAGACATTTCAGACAGTGTGT 58.897 40.000 0.00 0.00 0.00 3.72
6119 6916 5.230936 CGCTATAGACATTTCAGACAGTGTG 59.769 44.000 0.00 0.00 0.00 3.82
6120 6917 5.344066 CGCTATAGACATTTCAGACAGTGT 58.656 41.667 3.21 0.00 0.00 3.55
6121 6918 4.208047 GCGCTATAGACATTTCAGACAGTG 59.792 45.833 3.21 0.00 0.00 3.66
6122 6919 4.363999 GCGCTATAGACATTTCAGACAGT 58.636 43.478 3.21 0.00 0.00 3.55
6123 6920 3.738282 GGCGCTATAGACATTTCAGACAG 59.262 47.826 7.64 0.00 0.00 3.51
6124 6921 3.384789 AGGCGCTATAGACATTTCAGACA 59.615 43.478 7.64 0.00 0.00 3.41
6125 6922 3.983741 AGGCGCTATAGACATTTCAGAC 58.016 45.455 7.64 0.00 0.00 3.51
6126 6923 4.672587 AAGGCGCTATAGACATTTCAGA 57.327 40.909 7.64 0.00 0.00 3.27
6127 6924 8.534333 TTTATAAGGCGCTATAGACATTTCAG 57.466 34.615 7.64 0.00 0.00 3.02
6128 6925 8.896320 TTTTATAAGGCGCTATAGACATTTCA 57.104 30.769 7.64 0.00 0.00 2.69
6129 6926 8.989980 ACTTTTATAAGGCGCTATAGACATTTC 58.010 33.333 7.64 0.00 35.61 2.17
6130 6927 8.904099 ACTTTTATAAGGCGCTATAGACATTT 57.096 30.769 7.64 0.00 35.61 2.32
6131 6928 9.991906 TTACTTTTATAAGGCGCTATAGACATT 57.008 29.630 7.64 1.21 35.61 2.71
6132 6929 9.991906 TTTACTTTTATAAGGCGCTATAGACAT 57.008 29.630 7.64 0.00 35.61 3.06
6133 6930 9.252962 GTTTACTTTTATAAGGCGCTATAGACA 57.747 33.333 7.64 0.00 35.61 3.41
6134 6931 9.252962 TGTTTACTTTTATAAGGCGCTATAGAC 57.747 33.333 7.64 0.00 35.61 2.59
6135 6932 9.472361 CTGTTTACTTTTATAAGGCGCTATAGA 57.528 33.333 7.64 0.00 35.61 1.98
6136 6933 9.472361 TCTGTTTACTTTTATAAGGCGCTATAG 57.528 33.333 7.64 0.00 35.61 1.31
6137 6934 9.472361 CTCTGTTTACTTTTATAAGGCGCTATA 57.528 33.333 7.64 0.00 35.61 1.31
6138 6935 7.441458 CCTCTGTTTACTTTTATAAGGCGCTAT 59.559 37.037 7.64 0.01 35.61 2.97
6139 6936 6.759827 CCTCTGTTTACTTTTATAAGGCGCTA 59.240 38.462 7.64 0.00 35.61 4.26
6140 6937 5.585047 CCTCTGTTTACTTTTATAAGGCGCT 59.415 40.000 7.64 0.00 35.61 5.92
6141 6938 5.220796 CCCTCTGTTTACTTTTATAAGGCGC 60.221 44.000 0.00 0.00 35.61 6.53
6142 6939 6.110707 TCCCTCTGTTTACTTTTATAAGGCG 58.889 40.000 0.00 0.00 35.61 5.52
6143 6940 7.110810 ACTCCCTCTGTTTACTTTTATAAGGC 58.889 38.462 0.00 0.00 35.61 4.35
6144 6941 9.597170 GTACTCCCTCTGTTTACTTTTATAAGG 57.403 37.037 0.00 0.00 35.61 2.69
6181 6978 6.769134 TCTATGTTTCTGACGTATCCTTGA 57.231 37.500 0.00 0.00 0.00 3.02
6240 7038 9.409312 CAAATTTGTTTGTATTGCAGACAGATA 57.591 29.630 10.15 0.00 42.12 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.