Multiple sequence alignment - TraesCS4B01G198900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G198900 chr4B 100.000 4927 0 0 1 4927 427498393 427503319 0.000000e+00 9099.0
1 TraesCS4B01G198900 chr4B 100.000 712 0 0 5055 5766 427503447 427504158 0.000000e+00 1315.0
2 TraesCS4B01G198900 chr4B 79.412 170 15 11 378 541 385957703 385957548 1.020000e-17 102.0
3 TraesCS4B01G198900 chr4D 88.553 3407 209 76 290 3598 346453900 346457223 0.000000e+00 3964.0
4 TraesCS4B01G198900 chr4D 93.090 1288 76 9 3651 4927 346457215 346458500 0.000000e+00 1873.0
5 TraesCS4B01G198900 chr4D 94.150 735 16 8 5055 5766 346458557 346459287 0.000000e+00 1094.0
6 TraesCS4B01G198900 chr4D 89.634 164 10 2 114 270 346453745 346453908 9.800000e-48 202.0
7 TraesCS4B01G198900 chr4A 93.380 1284 77 6 3648 4927 119077727 119076448 0.000000e+00 1893.0
8 TraesCS4B01G198900 chr4A 91.742 993 57 13 2611 3594 119078705 119077729 0.000000e+00 1356.0
9 TraesCS4B01G198900 chr4A 85.714 945 55 33 594 1471 119080696 119079765 0.000000e+00 924.0
10 TraesCS4B01G198900 chr4A 88.707 735 27 22 5055 5766 119076391 119075690 0.000000e+00 846.0
11 TraesCS4B01G198900 chr4A 87.786 524 50 6 2009 2524 119079213 119078696 8.270000e-168 601.0
12 TraesCS4B01G198900 chr4A 84.561 570 38 12 1465 2032 119079742 119079221 2.380000e-143 520.0
13 TraesCS4B01G198900 chr4A 83.770 382 33 20 207 567 119081126 119080753 9.260000e-88 335.0
14 TraesCS4B01G198900 chr4A 92.857 70 5 0 108 177 119081256 119081187 1.020000e-17 102.0
15 TraesCS4B01G198900 chr4A 79.651 172 11 11 378 541 538908475 538908630 1.020000e-17 102.0
16 TraesCS4B01G198900 chr7D 86.139 505 63 5 3679 4181 637137419 637136920 6.570000e-149 538.0
17 TraesCS4B01G198900 chr5D 85.972 499 63 5 3679 4175 497175933 497176426 1.420000e-145 527.0
18 TraesCS4B01G198900 chr5D 91.250 80 4 3 5598 5677 497177039 497177115 7.900000e-19 106.0
19 TraesCS4B01G198900 chr5D 97.561 41 0 1 70 110 430447417 430447378 1.040000e-07 69.4
20 TraesCS4B01G198900 chrUn 87.970 266 24 4 3931 4195 88520891 88520633 2.020000e-79 307.0
21 TraesCS4B01G198900 chrUn 81.633 245 43 2 4503 4746 88520504 88520261 9.800000e-48 202.0
22 TraesCS4B01G198900 chr2B 80.000 170 14 8 378 541 17219741 17219896 2.200000e-19 108.0
23 TraesCS4B01G198900 chr2B 80.000 170 14 8 378 541 414953425 414953270 2.200000e-19 108.0
24 TraesCS4B01G198900 chr2B 79.412 170 15 8 378 541 127203102 127202947 1.020000e-17 102.0
25 TraesCS4B01G198900 chr7B 82.796 93 13 3 5212 5303 734792082 734791992 4.790000e-11 80.5
26 TraesCS4B01G198900 chr2D 97.561 41 0 1 70 110 318557731 318557770 1.040000e-07 69.4
27 TraesCS4B01G198900 chr7A 93.182 44 1 2 67 110 227094662 227094703 4.820000e-06 63.9
28 TraesCS4B01G198900 chr3D 90.476 42 0 4 56 95 26681210 26681249 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G198900 chr4B 427498393 427504158 5765 False 5207.000 9099 100.000000 1 5766 2 chr4B.!!$F1 5765
1 TraesCS4B01G198900 chr4D 346453745 346459287 5542 False 1783.250 3964 91.356750 114 5766 4 chr4D.!!$F1 5652
2 TraesCS4B01G198900 chr4A 119075690 119081256 5566 True 822.125 1893 88.564625 108 5766 8 chr4A.!!$R1 5658
3 TraesCS4B01G198900 chr5D 497175933 497177115 1182 False 316.500 527 88.611000 3679 5677 2 chr5D.!!$F1 1998
4 TraesCS4B01G198900 chrUn 88520261 88520891 630 True 254.500 307 84.801500 3931 4746 2 chrUn.!!$R1 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 720 0.254462 CCAAGGAAGGAGAAGGAGGC 59.746 60.0 0.00 0.0 0.00 4.70 F
1621 1836 0.179179 GCTCTTCTTTGGATGCGTGC 60.179 55.0 0.00 0.0 0.00 5.34 F
1881 2098 0.254462 TGGTCTGTGTGCAGGACAAA 59.746 50.0 0.00 0.0 42.78 2.83 F
2292 2559 0.534877 GATGTATGCATGTCCCCGCA 60.535 55.0 10.16 0.0 43.45 5.69 F
3612 3992 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 F
4570 4973 0.712380 AGGCCACCCCTTTGATCAAT 59.288 50.0 9.40 0.0 43.06 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 2540 0.037419 AAATTTGTGCGGGGACATGC 60.037 50.000 0.00 0.0 0.00 4.06 R
3502 3882 0.179702 GCCTCTGGTCATCATCAGCA 59.820 55.000 0.00 0.0 0.00 4.41 R
3878 4258 0.169009 CCAAAGTCGGCTAGCTTTGC 59.831 55.000 15.72 0.0 45.91 3.68 R
4005 4385 5.455392 CAAAGCTGTAAACATCTGACTTGG 58.545 41.667 0.00 0.0 0.00 3.61 R
4633 5036 1.339727 GCAACGGAAAGGACCTGGTAT 60.340 52.381 0.00 0.0 0.00 2.73 R
5412 5839 1.763120 AGGACATGCAACTGCCTGA 59.237 52.632 13.04 0.0 38.67 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.351327 AGAGCAAAGTTATGTATCTTTCGC 57.649 37.500 0.00 0.00 32.52 4.70
25 26 5.874810 AGAGCAAAGTTATGTATCTTTCGCA 59.125 36.000 13.77 0.00 34.05 5.10
26 27 6.371548 AGAGCAAAGTTATGTATCTTTCGCAA 59.628 34.615 13.77 0.00 34.05 4.85
27 28 6.908825 AGCAAAGTTATGTATCTTTCGCAAA 58.091 32.000 13.77 0.00 34.05 3.68
28 29 7.367285 AGCAAAGTTATGTATCTTTCGCAAAA 58.633 30.769 13.77 0.00 34.05 2.44
29 30 7.865385 AGCAAAGTTATGTATCTTTCGCAAAAA 59.135 29.630 13.77 0.00 34.05 1.94
30 31 8.155923 GCAAAGTTATGTATCTTTCGCAAAAAG 58.844 33.333 2.83 2.83 32.52 2.27
31 32 9.393249 CAAAGTTATGTATCTTTCGCAAAAAGA 57.607 29.630 12.24 12.24 40.17 2.52
32 33 9.959749 AAAGTTATGTATCTTTCGCAAAAAGAA 57.040 25.926 13.48 1.05 39.43 2.52
33 34 9.959749 AAGTTATGTATCTTTCGCAAAAAGAAA 57.040 25.926 13.48 0.35 39.43 2.52
79 80 9.896645 TTATACTTATGTATACTACTCCCTCCG 57.103 37.037 4.17 0.00 40.24 4.63
80 81 6.198237 ACTTATGTATACTACTCCCTCCGT 57.802 41.667 4.17 0.00 0.00 4.69
81 82 6.237154 ACTTATGTATACTACTCCCTCCGTC 58.763 44.000 4.17 0.00 0.00 4.79
82 83 3.498774 TGTATACTACTCCCTCCGTCC 57.501 52.381 4.17 0.00 0.00 4.79
83 84 2.107204 TGTATACTACTCCCTCCGTCCC 59.893 54.545 4.17 0.00 0.00 4.46
84 85 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
85 86 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
86 87 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
87 88 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
88 89 1.962100 CTACTCCCTCCGTCCCATAAC 59.038 57.143 0.00 0.00 0.00 1.89
89 90 1.041447 ACTCCCTCCGTCCCATAACG 61.041 60.000 0.00 0.00 42.24 3.18
90 91 1.000739 TCCCTCCGTCCCATAACGT 59.999 57.895 0.00 0.00 41.01 3.99
91 92 0.258484 TCCCTCCGTCCCATAACGTA 59.742 55.000 0.00 0.00 41.01 3.57
92 93 0.672342 CCCTCCGTCCCATAACGTAG 59.328 60.000 0.00 0.00 41.01 3.51
93 94 0.672342 CCTCCGTCCCATAACGTAGG 59.328 60.000 0.00 0.00 41.46 3.18
94 95 1.683943 CTCCGTCCCATAACGTAGGA 58.316 55.000 3.41 0.00 41.01 2.94
95 96 1.336125 CTCCGTCCCATAACGTAGGAC 59.664 57.143 13.98 13.98 45.49 3.85
156 157 6.323482 TCACCTTGTCAAATTTTCTGATGGAA 59.677 34.615 0.00 0.00 0.00 3.53
159 160 6.091713 CCTTGTCAAATTTTCTGATGGAATGC 59.908 38.462 0.00 0.00 33.53 3.56
179 180 5.850557 TGCCACCCATTTATTTACAGATG 57.149 39.130 0.00 0.00 0.00 2.90
181 182 6.135454 TGCCACCCATTTATTTACAGATGAT 58.865 36.000 0.00 0.00 0.00 2.45
200 232 4.252878 TGATTACTCGAAGCAAGCATGAA 58.747 39.130 0.00 0.00 28.17 2.57
270 309 5.726397 TCACTAAGTAACAAGTGTGTGTGT 58.274 37.500 2.72 0.00 42.96 3.72
271 310 5.579119 TCACTAAGTAACAAGTGTGTGTGTG 59.421 40.000 2.72 0.00 42.96 3.82
272 311 5.350365 CACTAAGTAACAAGTGTGTGTGTGT 59.650 40.000 0.00 0.00 38.27 3.72
273 312 4.678509 AAGTAACAAGTGTGTGTGTGTG 57.321 40.909 0.00 0.00 38.27 3.82
274 313 3.670625 AGTAACAAGTGTGTGTGTGTGT 58.329 40.909 0.00 0.00 38.27 3.72
275 314 2.987413 AACAAGTGTGTGTGTGTGTG 57.013 45.000 0.00 0.00 38.27 3.82
276 315 1.890876 ACAAGTGTGTGTGTGTGTGT 58.109 45.000 0.00 0.00 36.31 3.72
277 316 1.535028 ACAAGTGTGTGTGTGTGTGTG 59.465 47.619 0.00 0.00 36.31 3.82
278 317 1.535028 CAAGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
279 318 1.155889 AGTGTGTGTGTGTGTGTGTG 58.844 50.000 0.00 0.00 0.00 3.82
280 319 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
281 320 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
282 321 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
283 322 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
284 323 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
285 324 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
286 325 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
287 326 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
288 327 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
289 328 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
290 329 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
291 330 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
292 331 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
293 332 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
294 333 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
295 334 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
296 335 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
297 336 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
298 337 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
324 363 1.208776 AGACCGTGGTTAGGTTATGGC 59.791 52.381 0.00 0.00 43.01 4.40
346 418 2.662596 CTGGTAGCAAGCACGGGA 59.337 61.111 0.00 0.00 0.00 5.14
601 720 0.254462 CCAAGGAAGGAGAAGGAGGC 59.746 60.000 0.00 0.00 0.00 4.70
634 754 6.634436 CGAATTCACAGAGACCAAAGAAAAAG 59.366 38.462 6.22 0.00 0.00 2.27
636 756 3.312421 TCACAGAGACCAAAGAAAAAGCG 59.688 43.478 0.00 0.00 0.00 4.68
663 787 1.640917 AAGGAAGGCGTACTTGGAGA 58.359 50.000 0.00 0.00 40.21 3.71
680 804 2.095059 GGAGAAAGTACGCAACGTAGGA 60.095 50.000 0.00 0.00 43.06 2.94
791 928 1.069765 CAGACGGCACCTGACAGTT 59.930 57.895 0.93 0.00 33.65 3.16
802 943 1.517242 CTGACAGTTGAGCAGTTCCC 58.483 55.000 0.00 0.00 0.00 3.97
836 977 0.396811 CGTGGACAAAAGGGAGGACT 59.603 55.000 0.00 0.00 0.00 3.85
949 1093 0.548510 CACTTCCCTTCCATCCCTCC 59.451 60.000 0.00 0.00 0.00 4.30
979 1124 1.003355 CCTCACCACTGCATTCCGT 60.003 57.895 0.00 0.00 0.00 4.69
980 1125 1.300971 CCTCACCACTGCATTCCGTG 61.301 60.000 0.00 0.00 0.00 4.94
1065 1210 3.854669 ATGAGGAAGGAGCCCGCG 61.855 66.667 0.00 0.00 0.00 6.46
1204 1349 4.775253 TCTTCTCCTTCTTCTTCTTCTCCC 59.225 45.833 0.00 0.00 0.00 4.30
1205 1350 3.445987 TCTCCTTCTTCTTCTTCTCCCC 58.554 50.000 0.00 0.00 0.00 4.81
1219 1364 4.016706 CCCCTGACGCCGGTTCTT 62.017 66.667 1.90 0.00 0.00 2.52
1220 1365 2.032071 CCCTGACGCCGGTTCTTT 59.968 61.111 1.90 0.00 0.00 2.52
1283 1447 1.141019 TCTCTTGGTATCGTGCGGC 59.859 57.895 0.00 0.00 0.00 6.53
1291 1455 3.207547 TATCGTGCGGCTGATCGGG 62.208 63.158 10.74 0.00 0.00 5.14
1301 1465 1.084370 GCTGATCGGGTTCTCGGTTG 61.084 60.000 3.14 0.00 0.00 3.77
1305 1469 1.205417 GATCGGGTTCTCGGTTGGTTA 59.795 52.381 0.00 0.00 0.00 2.85
1335 1499 0.824109 TGGTCTATGAGCGAGGGTTG 59.176 55.000 0.00 0.00 32.15 3.77
1336 1500 1.112113 GGTCTATGAGCGAGGGTTGA 58.888 55.000 0.00 0.00 0.00 3.18
1338 1502 2.288518 GGTCTATGAGCGAGGGTTGATC 60.289 54.545 0.00 0.00 0.00 2.92
1377 1563 4.854399 TGATGTTTGGTTCGTGAAATGTC 58.146 39.130 0.00 0.00 0.00 3.06
1425 1611 3.552384 TGCCCGTGTTCGTTCCCT 61.552 61.111 0.00 0.00 35.01 4.20
1436 1622 1.153353 TCGTTCCCTCAATTTGCGAC 58.847 50.000 0.00 0.00 0.00 5.19
1454 1640 2.577911 GCCGCAATGCTTTCTCGC 60.578 61.111 2.94 0.00 0.00 5.03
1455 1641 2.869646 CCGCAATGCTTTCTCGCA 59.130 55.556 2.94 0.00 45.10 5.10
1490 1705 5.174037 TCTTGGGAATTAGGATTTCGTGT 57.826 39.130 0.00 0.00 0.00 4.49
1492 1707 6.346096 TCTTGGGAATTAGGATTTCGTGTAG 58.654 40.000 0.00 0.00 0.00 2.74
1495 1710 5.045432 TGGGAATTAGGATTTCGTGTAGGTT 60.045 40.000 0.00 0.00 0.00 3.50
1505 1720 6.148811 GGATTTCGTGTAGGTTCATTTCTTCA 59.851 38.462 0.00 0.00 0.00 3.02
1517 1732 8.718734 AGGTTCATTTCTTCACGATTAAGTAAC 58.281 33.333 0.00 0.00 0.00 2.50
1521 1736 8.922676 TCATTTCTTCACGATTAAGTAACTGAC 58.077 33.333 0.00 0.00 0.00 3.51
1523 1738 7.869016 TTCTTCACGATTAAGTAACTGACTG 57.131 36.000 0.00 0.00 38.87 3.51
1530 1745 1.226746 AAGTAACTGACTGCGCCAAC 58.773 50.000 4.18 0.00 38.87 3.77
1539 1754 1.945662 CTGCGCCAACAAAGTGTGC 60.946 57.895 4.18 0.00 0.00 4.57
1544 1759 1.597937 CGCCAACAAAGTGTGCTTCTC 60.598 52.381 0.00 0.00 33.01 2.87
1545 1760 1.678101 GCCAACAAAGTGTGCTTCTCT 59.322 47.619 0.00 0.00 33.01 3.10
1546 1761 2.099756 GCCAACAAAGTGTGCTTCTCTT 59.900 45.455 0.00 0.00 33.01 2.85
1547 1762 3.793465 GCCAACAAAGTGTGCTTCTCTTC 60.793 47.826 0.00 0.00 33.01 2.87
1548 1763 3.629398 CCAACAAAGTGTGCTTCTCTTCT 59.371 43.478 0.00 0.00 33.01 2.85
1574 1789 2.489329 CCTGAAACCGCACAAGATTCAT 59.511 45.455 0.00 0.00 30.39 2.57
1589 1804 2.995466 TTCATGCGCTCCTTTCTTTG 57.005 45.000 9.73 0.00 0.00 2.77
1590 1805 2.183478 TCATGCGCTCCTTTCTTTGA 57.817 45.000 9.73 0.00 0.00 2.69
1591 1806 2.715046 TCATGCGCTCCTTTCTTTGAT 58.285 42.857 9.73 0.00 0.00 2.57
1604 1819 4.859304 TTCTTTGATCTTTGCATGTGCT 57.141 36.364 6.55 0.00 42.66 4.40
1606 1821 4.077108 TCTTTGATCTTTGCATGTGCTCT 58.923 39.130 6.55 0.00 42.66 4.09
1616 1831 2.490509 TGCATGTGCTCTTCTTTGGATG 59.509 45.455 6.55 0.00 42.66 3.51
1617 1832 2.734492 GCATGTGCTCTTCTTTGGATGC 60.734 50.000 0.00 0.00 38.21 3.91
1618 1833 1.159285 TGTGCTCTTCTTTGGATGCG 58.841 50.000 0.00 0.00 0.00 4.73
1619 1834 1.160137 GTGCTCTTCTTTGGATGCGT 58.840 50.000 0.00 0.00 0.00 5.24
1620 1835 1.135859 GTGCTCTTCTTTGGATGCGTG 60.136 52.381 0.00 0.00 0.00 5.34
1621 1836 0.179179 GCTCTTCTTTGGATGCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
1622 1837 1.159285 CTCTTCTTTGGATGCGTGCA 58.841 50.000 0.00 0.00 0.00 4.57
1623 1838 1.129998 CTCTTCTTTGGATGCGTGCAG 59.870 52.381 0.00 0.00 0.00 4.41
1624 1839 1.159285 CTTCTTTGGATGCGTGCAGA 58.841 50.000 0.00 0.00 0.00 4.26
1625 1840 1.741706 CTTCTTTGGATGCGTGCAGAT 59.258 47.619 0.00 0.00 0.00 2.90
1630 1845 2.455674 TGGATGCGTGCAGATATACC 57.544 50.000 0.00 0.00 0.00 2.73
1642 1857 7.293745 CGTGCAGATATACCATCAAGAAATTC 58.706 38.462 0.00 0.00 0.00 2.17
1643 1858 7.172190 CGTGCAGATATACCATCAAGAAATTCT 59.828 37.037 0.00 0.00 0.00 2.40
1672 1887 7.809806 CACCTTTGGATACTTCAATTCACTTTC 59.190 37.037 0.00 0.00 37.61 2.62
1690 1905 4.466726 ACTTTCTTACCAATCGGCTACTCT 59.533 41.667 0.00 0.00 34.57 3.24
1720 1935 0.385390 ACTTTCAAGTTTGCAGGGCG 59.615 50.000 0.00 0.00 35.21 6.13
1723 1938 2.192664 TTCAAGTTTGCAGGGCGATA 57.807 45.000 0.00 0.00 0.00 2.92
1724 1939 2.192664 TCAAGTTTGCAGGGCGATAA 57.807 45.000 0.00 0.00 0.00 1.75
1725 1940 2.722094 TCAAGTTTGCAGGGCGATAAT 58.278 42.857 0.00 0.00 0.00 1.28
1726 1941 3.879998 TCAAGTTTGCAGGGCGATAATA 58.120 40.909 0.00 0.00 0.00 0.98
1752 1969 3.183754 TGTTCGCTAATGTACCATGACG 58.816 45.455 0.00 0.00 0.00 4.35
1765 1982 7.136289 TGTACCATGACGTTTTTCTTATTCC 57.864 36.000 0.00 0.00 0.00 3.01
1766 1983 5.291293 ACCATGACGTTTTTCTTATTCCG 57.709 39.130 0.00 0.00 0.00 4.30
1771 1988 5.782047 TGACGTTTTTCTTATTCCGGTAGA 58.218 37.500 0.00 0.00 0.00 2.59
1858 2075 9.413048 GTGCATTCTACTAGTCATTTAGTATCC 57.587 37.037 0.00 0.00 36.01 2.59
1881 2098 0.254462 TGGTCTGTGTGCAGGACAAA 59.746 50.000 0.00 0.00 42.78 2.83
1889 2106 5.874810 TCTGTGTGCAGGACAAAATATACTC 59.125 40.000 0.00 0.00 42.78 2.59
1894 2111 2.221055 CAGGACAAAATATACTCGCGGC 59.779 50.000 6.13 0.00 0.00 6.53
1964 2187 2.306219 GTGGTCCTAGGGCTTCTTCTTT 59.694 50.000 14.34 0.00 0.00 2.52
1965 2188 2.572104 TGGTCCTAGGGCTTCTTCTTTC 59.428 50.000 14.34 0.00 0.00 2.62
1969 2192 3.519913 TCCTAGGGCTTCTTCTTTCTTCC 59.480 47.826 9.46 0.00 0.00 3.46
1970 2193 3.521531 CCTAGGGCTTCTTCTTTCTTCCT 59.478 47.826 0.00 0.00 0.00 3.36
1972 2195 4.461450 AGGGCTTCTTCTTTCTTCCTTT 57.539 40.909 0.00 0.00 0.00 3.11
1973 2196 4.402829 AGGGCTTCTTCTTTCTTCCTTTC 58.597 43.478 0.00 0.00 0.00 2.62
1974 2197 4.105537 AGGGCTTCTTCTTTCTTCCTTTCT 59.894 41.667 0.00 0.00 0.00 2.52
1975 2198 5.310857 AGGGCTTCTTCTTTCTTCCTTTCTA 59.689 40.000 0.00 0.00 0.00 2.10
1976 2199 6.012069 AGGGCTTCTTCTTTCTTCCTTTCTAT 60.012 38.462 0.00 0.00 0.00 1.98
1977 2200 7.182930 AGGGCTTCTTCTTTCTTCCTTTCTATA 59.817 37.037 0.00 0.00 0.00 1.31
1978 2201 7.829706 GGGCTTCTTCTTTCTTCCTTTCTATAA 59.170 37.037 0.00 0.00 0.00 0.98
2020 2243 7.010923 GCACAGTCTTGAGGTCTTCTATATTTG 59.989 40.741 0.00 0.00 0.00 2.32
2021 2244 7.493971 CACAGTCTTGAGGTCTTCTATATTTGG 59.506 40.741 0.00 0.00 0.00 3.28
2024 2247 8.606830 AGTCTTGAGGTCTTCTATATTTGGTTT 58.393 33.333 0.00 0.00 0.00 3.27
2031 2285 9.765795 AGGTCTTCTATATTTGGTTTAAGATCG 57.234 33.333 0.00 0.00 29.93 3.69
2060 2314 1.967779 GCCCAAAACCTACACAACCAT 59.032 47.619 0.00 0.00 0.00 3.55
2066 2320 1.344065 ACCTACACAACCATCGTGGA 58.656 50.000 10.46 0.00 40.96 4.02
2093 2349 1.144276 TGACGCCGACCAAAACAGA 59.856 52.632 0.00 0.00 0.00 3.41
2104 2360 1.269051 CCAAAACAGAGCAAACGTCCC 60.269 52.381 0.00 0.00 0.00 4.46
2147 2403 1.260544 GCTGTTCTGGGCCTTGAAAT 58.739 50.000 4.53 0.00 0.00 2.17
2194 2450 8.028938 AGTGAGTAAATGTTATTTGATTGTGGC 58.971 33.333 0.00 0.00 0.00 5.01
2197 2453 9.369904 GAGTAAATGTTATTTGATTGTGGCAAT 57.630 29.630 0.00 0.00 0.00 3.56
2202 2458 9.896263 AATGTTATTTGATTGTGGCAATTTTTC 57.104 25.926 0.00 0.00 0.00 2.29
2203 2459 8.674263 TGTTATTTGATTGTGGCAATTTTTCT 57.326 26.923 0.00 0.00 0.00 2.52
2241 2497 9.574516 AATTAATGTTATTATGAGGAGGACCAC 57.425 33.333 0.00 0.00 38.94 4.16
2242 2498 6.575244 AATGTTATTATGAGGAGGACCACA 57.425 37.500 0.00 0.00 40.66 4.17
2243 2499 6.575244 ATGTTATTATGAGGAGGACCACAA 57.425 37.500 0.00 0.00 39.90 3.33
2244 2500 6.381498 TGTTATTATGAGGAGGACCACAAA 57.619 37.500 0.00 0.00 39.90 2.83
2245 2501 6.969043 TGTTATTATGAGGAGGACCACAAAT 58.031 36.000 0.00 0.00 39.90 2.32
2246 2502 7.054124 TGTTATTATGAGGAGGACCACAAATC 58.946 38.462 0.00 0.00 39.90 2.17
2265 2525 1.212751 CCACTGTGTCTCGCGATGA 59.787 57.895 10.36 6.72 0.00 2.92
2280 2540 4.858692 TCGCGATGATATGTGTGATGTATG 59.141 41.667 3.71 0.00 0.00 2.39
2286 2553 6.790285 TGATATGTGTGATGTATGCATGTC 57.210 37.500 10.16 5.57 35.07 3.06
2292 2559 0.534877 GATGTATGCATGTCCCCGCA 60.535 55.000 10.16 0.00 43.45 5.69
2333 2600 4.199310 TCTTGCTATGGTTGGATTAGTGC 58.801 43.478 0.00 0.00 0.00 4.40
2421 2688 9.819267 TTTTGAATATGTGTGGTACGATATGTA 57.181 29.630 0.00 0.00 0.00 2.29
2509 2776 8.198109 ACAACTGTATACATCTATGTGTTCCTC 58.802 37.037 5.91 0.00 41.89 3.71
2519 2889 7.068348 ACATCTATGTGTTCCTCGTGTATTACT 59.932 37.037 0.00 0.00 40.03 2.24
2520 2890 8.565416 CATCTATGTGTTCCTCGTGTATTACTA 58.435 37.037 0.00 0.00 0.00 1.82
2521 2891 8.151141 TCTATGTGTTCCTCGTGTATTACTAG 57.849 38.462 0.00 0.00 0.00 2.57
2522 2892 5.571784 TGTGTTCCTCGTGTATTACTAGG 57.428 43.478 0.00 0.00 42.22 3.02
2523 2893 5.012239 TGTGTTCCTCGTGTATTACTAGGT 58.988 41.667 0.00 0.00 41.71 3.08
2524 2894 5.106038 TGTGTTCCTCGTGTATTACTAGGTG 60.106 44.000 0.00 0.00 41.71 4.00
2525 2895 5.012239 TGTTCCTCGTGTATTACTAGGTGT 58.988 41.667 0.00 0.00 41.71 4.16
2526 2896 6.094048 GTGTTCCTCGTGTATTACTAGGTGTA 59.906 42.308 0.00 0.00 41.71 2.90
2527 2897 6.094048 TGTTCCTCGTGTATTACTAGGTGTAC 59.906 42.308 0.00 0.00 41.71 2.90
2528 2898 5.744171 TCCTCGTGTATTACTAGGTGTACA 58.256 41.667 0.00 0.00 41.71 2.90
2529 2899 6.359804 TCCTCGTGTATTACTAGGTGTACAT 58.640 40.000 0.00 0.00 41.71 2.29
2530 2900 6.261603 TCCTCGTGTATTACTAGGTGTACATG 59.738 42.308 0.00 12.81 41.71 3.21
2531 2901 6.039047 CCTCGTGTATTACTAGGTGTACATGT 59.961 42.308 2.69 2.69 37.45 3.21
2532 2902 7.019774 TCGTGTATTACTAGGTGTACATGTC 57.980 40.000 0.00 0.00 36.16 3.06
2533 2903 6.825213 TCGTGTATTACTAGGTGTACATGTCT 59.175 38.462 0.00 0.00 36.16 3.41
2534 2904 6.910972 CGTGTATTACTAGGTGTACATGTCTG 59.089 42.308 0.00 0.00 32.25 3.51
2535 2905 7.414873 CGTGTATTACTAGGTGTACATGTCTGT 60.415 40.741 0.00 0.00 39.49 3.41
2536 2906 7.914346 GTGTATTACTAGGTGTACATGTCTGTC 59.086 40.741 0.00 0.00 36.79 3.51
2537 2907 7.832685 TGTATTACTAGGTGTACATGTCTGTCT 59.167 37.037 0.00 0.00 36.79 3.41
2538 2908 7.719871 ATTACTAGGTGTACATGTCTGTCTT 57.280 36.000 0.00 0.00 36.79 3.01
2539 2909 5.392767 ACTAGGTGTACATGTCTGTCTTG 57.607 43.478 0.00 0.68 36.79 3.02
2540 2910 5.077564 ACTAGGTGTACATGTCTGTCTTGA 58.922 41.667 0.00 0.00 36.79 3.02
2541 2911 5.717178 ACTAGGTGTACATGTCTGTCTTGAT 59.283 40.000 0.00 0.00 36.79 2.57
2542 2912 5.489792 AGGTGTACATGTCTGTCTTGATT 57.510 39.130 0.00 0.00 36.79 2.57
2543 2913 5.869579 AGGTGTACATGTCTGTCTTGATTT 58.130 37.500 0.00 0.00 36.79 2.17
2544 2914 7.004555 AGGTGTACATGTCTGTCTTGATTTA 57.995 36.000 0.00 0.00 36.79 1.40
2545 2915 7.624549 AGGTGTACATGTCTGTCTTGATTTAT 58.375 34.615 0.00 0.00 36.79 1.40
2546 2916 8.103305 AGGTGTACATGTCTGTCTTGATTTATT 58.897 33.333 0.00 0.00 36.79 1.40
2547 2917 9.378551 GGTGTACATGTCTGTCTTGATTTATTA 57.621 33.333 0.00 0.00 36.79 0.98
2564 2934 9.461312 TGATTTATTACTATTTCCACTTGCTGT 57.539 29.630 0.00 0.00 0.00 4.40
2607 2977 9.708092 GGAGTCTACCCATAAAATTACTATGTC 57.292 37.037 6.69 0.00 0.00 3.06
2608 2978 9.708092 GAGTCTACCCATAAAATTACTATGTCC 57.292 37.037 6.69 0.00 0.00 4.02
2609 2979 9.220906 AGTCTACCCATAAAATTACTATGTCCA 57.779 33.333 6.69 0.00 0.00 4.02
2610 2980 9.841295 GTCTACCCATAAAATTACTATGTCCAA 57.159 33.333 6.69 0.00 0.00 3.53
2677 3047 5.698832 TCAAAAGATTACATGGTTGCTTCG 58.301 37.500 0.00 0.00 0.00 3.79
2759 3132 9.469807 TTTACAATAAACCTTGTTGTTGCATAG 57.530 29.630 6.80 0.00 41.36 2.23
2762 3135 8.079809 ACAATAAACCTTGTTGTTGCATAGTAC 58.920 33.333 0.00 0.00 41.36 2.73
2769 3142 6.071952 CCTTGTTGTTGCATAGTACTTGGAAT 60.072 38.462 0.00 0.00 0.00 3.01
2799 3172 5.572896 CGGTTCCTTTTTGCTGATTCATAAC 59.427 40.000 0.00 0.00 0.00 1.89
2817 3190 2.963599 ACTTCCCACATAAACGGGTT 57.036 45.000 0.00 0.00 43.57 4.11
2825 3198 4.542735 CCACATAAACGGGTTTTGTTCTC 58.457 43.478 1.70 0.00 34.23 2.87
2827 3200 3.251487 ACATAAACGGGTTTTGTTCTCGG 59.749 43.478 1.70 0.00 34.23 4.63
2873 3246 5.410924 TCATGTGATAGCTGACAACTACAC 58.589 41.667 0.00 9.67 0.00 2.90
2919 3292 5.890419 TCTGCAGAGATGTCAAGATTAGAGA 59.110 40.000 13.74 0.00 0.00 3.10
2948 3321 2.474712 GCCGTGCGCACTAAGTTC 59.525 61.111 35.27 15.16 37.47 3.01
2970 3343 3.136123 CAAGCCCTGGTCCGCATG 61.136 66.667 0.00 0.00 0.00 4.06
2994 3367 3.057526 CGATCGCCTATCATTCACCTACA 60.058 47.826 0.26 0.00 33.87 2.74
3077 3450 6.016024 GGTTCGGAAAGGTTTATAAAGGTGTT 60.016 38.462 0.00 0.00 0.00 3.32
3080 3453 7.678837 TCGGAAAGGTTTATAAAGGTGTTCTA 58.321 34.615 0.00 0.00 0.00 2.10
3104 3477 1.130561 GGCAACGAGGTGAGTTAATGC 59.869 52.381 0.00 0.00 0.00 3.56
3120 3497 5.183140 AGTTAATGCGTTCTATTGGCAGTTT 59.817 36.000 0.00 0.00 40.44 2.66
3122 3499 4.882671 ATGCGTTCTATTGGCAGTTTAG 57.117 40.909 0.00 0.00 40.44 1.85
3152 3529 5.237127 GGAATTGCAGTCATGTTCGATGATA 59.763 40.000 0.00 0.00 0.00 2.15
3184 3561 9.535878 AACTCGGAAGATATTTTCTAGCTAAAG 57.464 33.333 6.01 0.00 40.84 1.85
3205 3582 2.949714 GTTGGTCACATGAACGACAG 57.050 50.000 11.73 0.00 43.89 3.51
3230 3607 7.172190 AGTGTGATGAGAAGTTAAACTGATGTG 59.828 37.037 0.00 0.00 0.00 3.21
3231 3608 6.427853 TGTGATGAGAAGTTAAACTGATGTGG 59.572 38.462 0.00 0.00 0.00 4.17
3232 3609 6.428159 GTGATGAGAAGTTAAACTGATGTGGT 59.572 38.462 0.00 0.00 0.00 4.16
3252 3629 3.002791 GTGAGTTCAAGAATGGATCGCA 58.997 45.455 0.00 0.00 0.00 5.10
3264 3641 1.401552 TGGATCGCAGTAGCATTTTGC 59.598 47.619 0.00 0.00 45.46 3.68
3320 3697 6.999272 TGCTATGGTTTACTGAGGTTGTTTTA 59.001 34.615 0.00 0.00 0.00 1.52
3355 3734 3.389329 AGGCTTGTGAGGATATGGTGTAG 59.611 47.826 0.00 0.00 0.00 2.74
3429 3809 2.302445 CCAATGGATTGCAAGGGAACAA 59.698 45.455 4.94 0.00 36.48 2.83
3459 3839 4.203226 TGCACAGAAGTTATGGTGTTGAA 58.797 39.130 2.04 0.00 33.88 2.69
3514 3894 1.669779 GGCTTCTGTGCTGATGATGAC 59.330 52.381 0.00 0.00 0.00 3.06
3524 3904 2.836262 CTGATGATGACCAGAGGCTTC 58.164 52.381 0.00 0.00 32.37 3.86
3601 3981 9.899661 ATGTTAAACTACCATATATGTGTGTGT 57.100 29.630 11.73 4.66 0.00 3.72
3602 3982 9.157104 TGTTAAACTACCATATATGTGTGTGTG 57.843 33.333 11.73 3.82 0.00 3.82
3603 3983 9.158233 GTTAAACTACCATATATGTGTGTGTGT 57.842 33.333 11.73 9.64 0.00 3.72
3604 3984 7.609760 AAACTACCATATATGTGTGTGTGTG 57.390 36.000 11.73 3.24 0.00 3.82
3605 3985 6.294361 ACTACCATATATGTGTGTGTGTGT 57.706 37.500 11.73 2.03 0.00 3.72
3606 3986 6.106003 ACTACCATATATGTGTGTGTGTGTG 58.894 40.000 11.73 2.12 0.00 3.82
3607 3987 4.905429 ACCATATATGTGTGTGTGTGTGT 58.095 39.130 11.73 0.00 0.00 3.72
3608 3988 4.694982 ACCATATATGTGTGTGTGTGTGTG 59.305 41.667 11.73 0.00 0.00 3.82
3609 3989 4.694982 CCATATATGTGTGTGTGTGTGTGT 59.305 41.667 11.73 0.00 0.00 3.72
3610 3990 5.390779 CCATATATGTGTGTGTGTGTGTGTG 60.391 44.000 11.73 0.00 0.00 3.82
3611 3991 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
3612 3992 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3613 3993 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3614 3994 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3615 3995 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3616 3996 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3617 3997 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3618 3998 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3619 3999 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3620 4000 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3621 4001 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3622 4002 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3623 4003 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3624 4004 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3625 4005 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3626 4006 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3627 4007 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3628 4008 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3629 4009 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3630 4010 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3631 4011 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3632 4012 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3633 4013 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3634 4014 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3635 4015 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3636 4016 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3637 4017 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3640 4020 1.804151 GTGTGTGTGTGTGTGTGTCTT 59.196 47.619 0.00 0.00 0.00 3.01
3642 4022 2.482336 TGTGTGTGTGTGTGTGTCTTTC 59.518 45.455 0.00 0.00 0.00 2.62
3644 4024 3.000041 TGTGTGTGTGTGTGTCTTTCTC 59.000 45.455 0.00 0.00 0.00 2.87
3646 4026 3.684788 GTGTGTGTGTGTGTCTTTCTCTT 59.315 43.478 0.00 0.00 0.00 2.85
3763 4143 6.125029 ACCTCTTGATTGGAATACAAGGATG 58.875 40.000 0.00 0.00 43.48 3.51
3810 4190 3.431207 GGCCTGAAGCATTTGCATGTTAT 60.431 43.478 5.20 0.00 46.50 1.89
3847 4227 2.953640 TAAACCGTGACGTGAAATGC 57.046 45.000 3.64 0.00 0.00 3.56
3850 4230 2.202171 CGTGACGTGAAATGCGCC 60.202 61.111 4.18 0.00 0.00 6.53
3878 4258 2.497138 TGCTTGGCGAGGAATATCATG 58.503 47.619 3.44 0.00 0.00 3.07
3886 4266 3.748048 GCGAGGAATATCATGCAAAGCTA 59.252 43.478 0.00 0.00 0.00 3.32
4005 4385 1.540267 TGAGAGCGGTCAGTTGACTAC 59.460 52.381 18.15 4.93 44.20 2.73
4063 4444 5.073144 ACTGGAGGTTATCACAGGAAGAAAA 59.927 40.000 0.00 0.00 33.13 2.29
4127 4508 3.010027 TGAATGGGTAAGCATCACTTCCA 59.990 43.478 0.00 0.00 39.97 3.53
4130 4511 1.065126 GGGTAAGCATCACTTCCAGCT 60.065 52.381 0.00 0.00 39.97 4.24
4250 4632 8.510505 GTGAGTTCTGATTTCTATTTGCTTCTT 58.489 33.333 0.00 0.00 0.00 2.52
4259 4641 9.914131 GATTTCTATTTGCTTCTTAAAACTGGT 57.086 29.630 0.00 0.00 0.00 4.00
4470 4872 6.711277 TGCTCCTTCAATGTACATCTTAAGT 58.289 36.000 9.23 0.00 0.00 2.24
4570 4973 0.712380 AGGCCACCCCTTTGATCAAT 59.288 50.000 9.40 0.00 43.06 2.57
4594 4997 1.077915 GGGATTTTGCAATGTTGGCG 58.922 50.000 0.00 0.00 0.00 5.69
4633 5036 7.657354 GGTAATCAGTACAGCATGACATCATTA 59.343 37.037 0.00 0.00 39.69 1.90
4793 5196 1.149627 CAAGTTCACCAACCCGGGA 59.850 57.895 32.02 0.00 40.22 5.14
4920 5332 0.760945 AGCTCTACTCCCCATTCCGG 60.761 60.000 0.00 0.00 0.00 5.14
5078 5490 2.301346 GCAAATATCCCTGTGTCCCTG 58.699 52.381 0.00 0.00 0.00 4.45
5112 5532 4.813161 GTCATATGTGGTCTTGGAGACATG 59.187 45.833 9.99 0.00 46.79 3.21
5183 5603 4.318332 CTCCTCTTGTTGACATGTTGCTA 58.682 43.478 0.00 0.00 0.00 3.49
5190 5610 4.698575 TGTTGACATGTTGCTACTGTACA 58.301 39.130 0.00 0.00 0.00 2.90
5302 5728 9.063615 TCCTTTCTAAAACAAAACATCTAGGTC 57.936 33.333 0.00 0.00 0.00 3.85
5394 5821 8.370182 GCCATTTTCAGGTGATTATTATCCAAT 58.630 33.333 0.00 0.00 0.00 3.16
5412 5839 3.885297 CCAATTGTTCCTGACTCTTGTGT 59.115 43.478 4.43 0.00 0.00 3.72
5588 6027 0.878416 GTTGCAAGCCAACGGTATCA 59.122 50.000 0.00 0.00 43.85 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.039270 TGCGAAAGATACATAACTTTGCTCTA 58.961 34.615 0.00 0.00 36.63 2.43
1 2 5.874810 TGCGAAAGATACATAACTTTGCTCT 59.125 36.000 0.00 0.00 36.63 4.09
2 3 6.106877 TGCGAAAGATACATAACTTTGCTC 57.893 37.500 0.00 0.00 36.63 4.26
3 4 6.494893 TTGCGAAAGATACATAACTTTGCT 57.505 33.333 0.00 0.00 36.63 3.91
5 6 9.393249 TCTTTTTGCGAAAGATACATAACTTTG 57.607 29.630 10.11 0.00 36.63 2.77
6 7 9.959749 TTCTTTTTGCGAAAGATACATAACTTT 57.040 25.926 13.73 0.00 38.74 2.66
7 8 9.959749 TTTCTTTTTGCGAAAGATACATAACTT 57.040 25.926 13.73 0.00 36.30 2.66
8 9 9.612620 CTTTCTTTTTGCGAAAGATACATAACT 57.387 29.630 13.73 0.00 46.37 2.24
9 10 9.607285 TCTTTCTTTTTGCGAAAGATACATAAC 57.393 29.630 13.73 0.00 46.71 1.89
53 54 9.896645 CGGAGGGAGTAGTATACATAAGTATAA 57.103 37.037 5.50 0.00 46.26 0.98
54 55 9.051259 ACGGAGGGAGTAGTATACATAAGTATA 57.949 37.037 5.50 0.00 46.26 1.47
55 56 7.926705 ACGGAGGGAGTAGTATACATAAGTAT 58.073 38.462 5.50 0.00 46.26 2.12
56 57 7.321717 ACGGAGGGAGTAGTATACATAAGTA 57.678 40.000 5.50 0.00 46.26 2.24
57 58 6.198237 ACGGAGGGAGTAGTATACATAAGT 57.802 41.667 5.50 0.00 46.26 2.24
58 59 5.647225 GGACGGAGGGAGTAGTATACATAAG 59.353 48.000 5.50 0.00 46.26 1.73
59 60 5.515534 GGGACGGAGGGAGTAGTATACATAA 60.516 48.000 5.50 0.00 46.26 1.90
60 61 4.018960 GGGACGGAGGGAGTAGTATACATA 60.019 50.000 5.50 0.00 46.26 2.29
61 62 3.245193 GGGACGGAGGGAGTAGTATACAT 60.245 52.174 5.50 0.00 46.26 2.29
62 63 2.107204 GGGACGGAGGGAGTAGTATACA 59.893 54.545 5.50 0.00 46.26 2.29
63 64 2.107204 TGGGACGGAGGGAGTAGTATAC 59.893 54.545 0.00 0.00 43.47 1.47
64 65 2.421725 TGGGACGGAGGGAGTAGTATA 58.578 52.381 0.00 0.00 0.00 1.47
65 66 1.229131 TGGGACGGAGGGAGTAGTAT 58.771 55.000 0.00 0.00 0.00 2.12
66 67 1.229131 ATGGGACGGAGGGAGTAGTA 58.771 55.000 0.00 0.00 0.00 1.82
67 68 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
68 69 1.962100 GTTATGGGACGGAGGGAGTAG 59.038 57.143 0.00 0.00 0.00 2.57
69 70 1.751733 CGTTATGGGACGGAGGGAGTA 60.752 57.143 0.00 0.00 39.27 2.59
70 71 1.041447 CGTTATGGGACGGAGGGAGT 61.041 60.000 0.00 0.00 39.27 3.85
71 72 1.041447 ACGTTATGGGACGGAGGGAG 61.041 60.000 2.39 0.00 46.77 4.30
72 73 0.258484 TACGTTATGGGACGGAGGGA 59.742 55.000 0.00 0.00 46.77 4.20
73 74 2.811307 TACGTTATGGGACGGAGGG 58.189 57.895 0.00 0.00 46.77 4.30
76 77 3.901087 TCCTACGTTATGGGACGGA 57.099 52.632 0.00 0.00 46.77 4.69
100 101 9.352191 GGTATAGAATCTACTCCTAGTGTCAAA 57.648 37.037 0.00 0.00 0.00 2.69
101 102 7.943447 GGGTATAGAATCTACTCCTAGTGTCAA 59.057 40.741 10.73 0.00 0.00 3.18
102 103 7.073343 TGGGTATAGAATCTACTCCTAGTGTCA 59.927 40.741 10.73 0.46 0.00 3.58
103 104 7.460071 TGGGTATAGAATCTACTCCTAGTGTC 58.540 42.308 10.73 0.00 0.00 3.67
104 105 7.295196 TCTGGGTATAGAATCTACTCCTAGTGT 59.705 40.741 17.96 0.00 0.00 3.55
105 106 7.691213 TCTGGGTATAGAATCTACTCCTAGTG 58.309 42.308 17.96 3.88 0.00 2.74
106 107 7.891825 TCTGGGTATAGAATCTACTCCTAGT 57.108 40.000 17.96 0.00 0.00 2.57
107 108 8.553153 TGATCTGGGTATAGAATCTACTCCTAG 58.447 40.741 14.82 14.82 0.00 3.02
108 109 8.330247 GTGATCTGGGTATAGAATCTACTCCTA 58.670 40.741 10.73 5.81 0.00 2.94
109 110 7.179269 GTGATCTGGGTATAGAATCTACTCCT 58.821 42.308 10.73 0.00 0.00 3.69
110 111 6.378848 GGTGATCTGGGTATAGAATCTACTCC 59.621 46.154 0.00 0.00 0.00 3.85
156 157 6.135454 TCATCTGTAAATAAATGGGTGGCAT 58.865 36.000 0.00 0.00 0.00 4.40
159 160 9.354673 AGTAATCATCTGTAAATAAATGGGTGG 57.645 33.333 0.00 0.00 0.00 4.61
179 180 4.093408 TGTTCATGCTTGCTTCGAGTAATC 59.907 41.667 0.00 0.00 0.00 1.75
181 182 3.186409 GTGTTCATGCTTGCTTCGAGTAA 59.814 43.478 0.00 0.00 0.00 2.24
222 254 4.822026 ACTGCAGAGTTGTATGTCCTTAC 58.178 43.478 23.35 0.00 0.00 2.34
227 259 4.859798 GTGAGTACTGCAGAGTTGTATGTC 59.140 45.833 23.35 4.81 33.21 3.06
270 309 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
271 310 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
272 311 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
273 312 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
274 313 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
275 314 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
276 315 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
277 316 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
278 317 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
279 318 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
280 319 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
281 320 1.136085 GTCACACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
282 321 1.152510 GTCACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
283 322 1.128507 CTGTCACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
284 323 1.001406 TCTGTCACACACACACACACA 59.999 47.619 0.00 0.00 0.00 3.72
285 324 1.660607 CTCTGTCACACACACACACAC 59.339 52.381 0.00 0.00 0.00 3.82
286 325 1.548269 TCTCTGTCACACACACACACA 59.452 47.619 0.00 0.00 0.00 3.72
287 326 1.927174 GTCTCTGTCACACACACACAC 59.073 52.381 0.00 0.00 0.00 3.82
288 327 1.134818 GGTCTCTGTCACACACACACA 60.135 52.381 0.00 0.00 0.00 3.72
289 328 1.571919 GGTCTCTGTCACACACACAC 58.428 55.000 0.00 0.00 0.00 3.82
290 329 0.102300 CGGTCTCTGTCACACACACA 59.898 55.000 0.00 0.00 0.00 3.72
291 330 0.102481 ACGGTCTCTGTCACACACAC 59.898 55.000 0.00 0.00 0.00 3.82
292 331 0.102300 CACGGTCTCTGTCACACACA 59.898 55.000 0.00 0.00 0.00 3.72
293 332 0.597637 CCACGGTCTCTGTCACACAC 60.598 60.000 0.00 0.00 0.00 3.82
294 333 1.040893 ACCACGGTCTCTGTCACACA 61.041 55.000 0.00 0.00 0.00 3.72
295 334 0.104304 AACCACGGTCTCTGTCACAC 59.896 55.000 0.00 0.00 0.00 3.82
296 335 1.611977 CTAACCACGGTCTCTGTCACA 59.388 52.381 0.00 0.00 0.00 3.58
297 336 1.067776 CCTAACCACGGTCTCTGTCAC 60.068 57.143 0.00 0.00 0.00 3.67
298 337 1.254026 CCTAACCACGGTCTCTGTCA 58.746 55.000 0.00 0.00 0.00 3.58
324 363 1.878775 GTGCTTGCTACCAGCCTTG 59.121 57.895 0.00 0.00 41.51 3.61
346 418 1.134788 CCTCCGAAAGATGGTAAGCGT 60.135 52.381 0.00 0.00 0.00 5.07
381 453 4.069232 CTCGCGCACCCCTTCTCA 62.069 66.667 8.75 0.00 0.00 3.27
634 754 1.876664 GCCTTCCTTTGGACTTCGC 59.123 57.895 0.00 0.00 0.00 4.70
636 756 2.074576 GTACGCCTTCCTTTGGACTTC 58.925 52.381 0.00 0.00 0.00 3.01
663 787 1.666888 CGGTCCTACGTTGCGTACTTT 60.667 52.381 0.00 0.00 41.54 2.66
671 795 1.804326 CGCCTTCGGTCCTACGTTG 60.804 63.158 0.00 0.00 34.94 4.10
680 804 4.814294 GGTCGATGCGCCTTCGGT 62.814 66.667 23.95 0.00 37.22 4.69
836 977 0.038435 AGACGAGACGAGACGACTCA 60.038 55.000 14.99 0.00 45.49 3.41
949 1093 2.041405 GTGAGGGAGGGAGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
1065 1210 1.443828 GATCTGGGACGGCTTCTCC 59.556 63.158 0.00 0.00 32.53 3.71
1204 1349 2.966309 GCAAAGAACCGGCGTCAGG 61.966 63.158 6.01 0.00 0.00 3.86
1205 1350 2.556287 GCAAAGAACCGGCGTCAG 59.444 61.111 6.01 0.00 0.00 3.51
1235 1399 2.675075 GCGGGGCCAAACTAGCAA 60.675 61.111 4.39 0.00 0.00 3.91
1283 1447 0.460284 CCAACCGAGAACCCGATCAG 60.460 60.000 0.00 0.00 0.00 2.90
1291 1455 2.056577 CGTCAGTAACCAACCGAGAAC 58.943 52.381 0.00 0.00 0.00 3.01
1301 1465 0.387750 GACCACCGACGTCAGTAACC 60.388 60.000 17.16 0.00 0.00 2.85
1305 1469 0.809385 CATAGACCACCGACGTCAGT 59.191 55.000 17.16 7.63 32.41 3.41
1335 1499 0.250513 AGTGAAGAAGCCACGGGATC 59.749 55.000 0.00 0.00 39.38 3.36
1336 1500 0.693049 AAGTGAAGAAGCCACGGGAT 59.307 50.000 0.00 0.00 39.38 3.85
1338 1502 0.250295 TCAAGTGAAGAAGCCACGGG 60.250 55.000 0.00 0.00 39.38 5.28
1340 1504 2.146342 ACATCAAGTGAAGAAGCCACG 58.854 47.619 0.00 0.00 39.38 4.94
1341 1505 4.293415 CAAACATCAAGTGAAGAAGCCAC 58.707 43.478 0.00 0.00 34.89 5.01
1342 1506 3.318839 CCAAACATCAAGTGAAGAAGCCA 59.681 43.478 0.00 0.00 0.00 4.75
1377 1563 1.512926 GCCATGGCACTATTCCGTAG 58.487 55.000 32.08 0.00 41.49 3.51
1415 1601 1.533731 TCGCAAATTGAGGGAACGAAC 59.466 47.619 0.00 0.00 0.00 3.95
1436 1622 2.276868 CGAGAAAGCATTGCGGCG 60.277 61.111 0.51 0.51 39.27 6.46
1454 1640 4.018484 TCCCAAGAATGCCCAAAAATTG 57.982 40.909 0.00 0.00 0.00 2.32
1455 1641 4.720775 TTCCCAAGAATGCCCAAAAATT 57.279 36.364 0.00 0.00 0.00 1.82
1490 1705 9.932207 TTACTTAATCGTGAAGAAATGAACCTA 57.068 29.630 1.67 0.00 0.00 3.08
1492 1707 8.718734 AGTTACTTAATCGTGAAGAAATGAACC 58.281 33.333 1.67 0.00 0.00 3.62
1495 1710 8.922676 GTCAGTTACTTAATCGTGAAGAAATGA 58.077 33.333 0.00 0.00 0.00 2.57
1505 1720 2.921754 GCGCAGTCAGTTACTTAATCGT 59.078 45.455 0.30 0.00 35.76 3.73
1521 1736 1.945662 GCACACTTTGTTGGCGCAG 60.946 57.895 10.83 0.00 0.00 5.18
1523 1738 1.208642 GAAGCACACTTTGTTGGCGC 61.209 55.000 0.00 0.00 35.82 6.53
1530 1745 2.478134 CCGAGAAGAGAAGCACACTTTG 59.522 50.000 0.00 0.00 35.82 2.77
1539 1754 0.898320 TTCAGGGCCGAGAAGAGAAG 59.102 55.000 9.90 0.00 0.00 2.85
1544 1759 4.303257 GGTTTCAGGGCCGAGAAG 57.697 61.111 12.94 0.00 0.00 2.85
1574 1789 2.479566 AGATCAAAGAAAGGAGCGCA 57.520 45.000 11.47 0.00 0.00 6.09
1578 1793 5.862323 CACATGCAAAGATCAAAGAAAGGAG 59.138 40.000 0.00 0.00 0.00 3.69
1589 1804 4.698583 AAGAAGAGCACATGCAAAGATC 57.301 40.909 6.64 0.00 45.16 2.75
1590 1805 4.321750 CCAAAGAAGAGCACATGCAAAGAT 60.322 41.667 6.64 0.00 45.16 2.40
1591 1806 3.005050 CCAAAGAAGAGCACATGCAAAGA 59.995 43.478 6.64 0.00 45.16 2.52
1604 1819 1.159285 CTGCACGCATCCAAAGAAGA 58.841 50.000 0.00 0.00 0.00 2.87
1606 1821 1.825090 ATCTGCACGCATCCAAAGAA 58.175 45.000 0.00 0.00 0.00 2.52
1616 1831 3.653344 TCTTGATGGTATATCTGCACGC 58.347 45.455 0.00 0.00 0.00 5.34
1617 1832 6.791887 ATTTCTTGATGGTATATCTGCACG 57.208 37.500 0.00 0.00 0.00 5.34
1618 1833 8.388484 AGAATTTCTTGATGGTATATCTGCAC 57.612 34.615 0.00 0.00 0.00 4.57
1619 1834 8.985315 AAGAATTTCTTGATGGTATATCTGCA 57.015 30.769 10.82 0.00 34.98 4.41
1642 1857 5.649782 ATTGAAGTATCCAAAGGTGCAAG 57.350 39.130 0.00 0.00 0.00 4.01
1643 1858 5.538053 TGAATTGAAGTATCCAAAGGTGCAA 59.462 36.000 0.00 0.00 0.00 4.08
1648 1863 8.115490 AGAAAGTGAATTGAAGTATCCAAAGG 57.885 34.615 0.00 0.00 0.00 3.11
1672 1887 3.886505 AGAGAGAGTAGCCGATTGGTAAG 59.113 47.826 0.00 0.00 37.67 2.34
1720 1935 8.913656 GGTACATTAGCGAACAAGACTATTATC 58.086 37.037 0.00 0.00 0.00 1.75
1723 1938 6.636705 TGGTACATTAGCGAACAAGACTATT 58.363 36.000 0.00 0.00 0.00 1.73
1724 1939 6.216801 TGGTACATTAGCGAACAAGACTAT 57.783 37.500 0.00 0.00 0.00 2.12
1725 1940 5.648178 TGGTACATTAGCGAACAAGACTA 57.352 39.130 0.00 0.00 0.00 2.59
1726 1941 4.530710 TGGTACATTAGCGAACAAGACT 57.469 40.909 0.00 0.00 0.00 3.24
1765 1982 8.882415 ATGTACCACTACATATTTTTCTACCG 57.118 34.615 0.00 0.00 41.12 4.02
1766 1983 8.975439 CGATGTACCACTACATATTTTTCTACC 58.025 37.037 0.00 0.00 42.66 3.18
1833 2050 8.585881 GGGATACTAAATGACTAGTAGAATGCA 58.414 37.037 3.59 0.00 37.70 3.96
1881 2098 3.936372 ACTGTATGCCGCGAGTATATT 57.064 42.857 8.23 0.00 0.00 1.28
1889 2106 4.983215 TGAAAATATACTGTATGCCGCG 57.017 40.909 10.51 0.00 0.00 6.46
1978 2201 2.080693 TGTGCTCTGACGTGTGTTTTT 58.919 42.857 0.00 0.00 0.00 1.94
2020 2243 3.487563 CCACTTTGGCGATCTTAAACC 57.512 47.619 0.00 0.00 0.00 3.27
2077 2333 2.251642 GCTCTGTTTTGGTCGGCGT 61.252 57.895 6.85 0.00 0.00 5.68
2093 2349 0.763035 AGGTTAGTGGGACGTTTGCT 59.237 50.000 0.00 0.00 0.00 3.91
2104 2360 6.159988 CACTTTCTGTTCTAGGAGGTTAGTG 58.840 44.000 0.00 0.00 0.00 2.74
2147 2403 9.098355 CTCACTAGCTAGTAAAATAATGTGCAA 57.902 33.333 25.63 0.00 34.13 4.08
2190 2446 8.880878 TTACTTCCTAAAAGAAAAATTGCCAC 57.119 30.769 0.00 0.00 0.00 5.01
2229 2485 0.991920 GGGATTTGTGGTCCTCCTCA 59.008 55.000 0.00 0.00 36.00 3.86
2234 2490 1.149101 ACAGTGGGATTTGTGGTCCT 58.851 50.000 0.00 0.00 36.00 3.85
2237 2493 1.494721 AGACACAGTGGGATTTGTGGT 59.505 47.619 0.00 0.00 46.83 4.16
2238 2494 2.154462 GAGACACAGTGGGATTTGTGG 58.846 52.381 0.00 0.00 46.83 4.17
2240 2496 1.878102 GCGAGACACAGTGGGATTTGT 60.878 52.381 0.00 0.00 0.00 2.83
2241 2497 0.798776 GCGAGACACAGTGGGATTTG 59.201 55.000 0.00 0.00 0.00 2.32
2242 2498 0.670546 CGCGAGACACAGTGGGATTT 60.671 55.000 0.00 0.00 0.00 2.17
2243 2499 1.079819 CGCGAGACACAGTGGGATT 60.080 57.895 0.00 0.00 0.00 3.01
2244 2500 1.323271 ATCGCGAGACACAGTGGGAT 61.323 55.000 16.66 0.00 46.97 3.85
2245 2501 1.977009 ATCGCGAGACACAGTGGGA 60.977 57.895 16.66 0.00 46.97 4.37
2246 2502 1.807165 CATCGCGAGACACAGTGGG 60.807 63.158 16.66 0.00 46.97 4.61
2265 2525 5.005740 GGGACATGCATACATCACACATAT 58.994 41.667 0.00 0.00 32.87 1.78
2280 2540 0.037419 AAATTTGTGCGGGGACATGC 60.037 50.000 0.00 0.00 0.00 4.06
2292 2559 5.418676 CAAGAACAAGGGACACAAATTTGT 58.581 37.500 18.13 18.13 43.36 2.83
2309 2576 5.449177 GCACTAATCCAACCATAGCAAGAAC 60.449 44.000 0.00 0.00 0.00 3.01
2350 2617 8.786826 TTAAGTTTTCATCTACATCACCGAAT 57.213 30.769 0.00 0.00 0.00 3.34
2360 2627 7.656137 TGGTGTCTCACTTAAGTTTTCATCTAC 59.344 37.037 5.07 0.00 34.40 2.59
2408 2675 7.825270 ACCTGTTTCATTTTACATATCGTACCA 59.175 33.333 0.00 0.00 0.00 3.25
2409 2676 8.205131 ACCTGTTTCATTTTACATATCGTACC 57.795 34.615 0.00 0.00 0.00 3.34
2421 2688 6.385649 ACGACATGTAACCTGTTTCATTTT 57.614 33.333 0.00 0.00 29.87 1.82
2442 2709 2.038387 AACAGGGGCAGCTATAAACG 57.962 50.000 0.00 0.00 0.00 3.60
2509 2776 6.910972 CAGACATGTACACCTAGTAATACACG 59.089 42.308 0.00 0.00 33.72 4.49
2519 2889 6.605471 AATCAAGACAGACATGTACACCTA 57.395 37.500 0.00 0.00 40.68 3.08
2520 2890 5.489792 AATCAAGACAGACATGTACACCT 57.510 39.130 0.00 0.00 40.68 4.00
2521 2891 7.849804 ATAAATCAAGACAGACATGTACACC 57.150 36.000 0.00 0.00 40.68 4.16
2538 2908 9.461312 ACAGCAAGTGGAAATAGTAATAAATCA 57.539 29.630 0.00 0.00 0.00 2.57
2581 2951 9.708092 GACATAGTAATTTTATGGGTAGACTCC 57.292 37.037 11.89 0.00 33.74 3.85
2582 2952 9.708092 GGACATAGTAATTTTATGGGTAGACTC 57.292 37.037 11.89 2.45 33.74 3.36
2583 2953 9.220906 TGGACATAGTAATTTTATGGGTAGACT 57.779 33.333 11.89 0.00 33.74 3.24
2584 2954 9.841295 TTGGACATAGTAATTTTATGGGTAGAC 57.159 33.333 11.89 0.00 33.74 2.59
2655 3025 5.569059 GTCGAAGCAACCATGTAATCTTTTG 59.431 40.000 0.00 0.00 0.00 2.44
2657 3027 4.759693 TGTCGAAGCAACCATGTAATCTTT 59.240 37.500 0.00 0.00 0.00 2.52
2658 3028 4.323417 TGTCGAAGCAACCATGTAATCTT 58.677 39.130 0.00 0.00 0.00 2.40
2669 3039 4.882671 ACAATATCCATGTCGAAGCAAC 57.117 40.909 0.00 0.00 0.00 4.17
2732 3102 8.900983 ATGCAACAACAAGGTTTATTGTAAAT 57.099 26.923 0.00 0.00 42.49 1.40
2748 3118 7.145323 ACAAATTCCAAGTACTATGCAACAAC 58.855 34.615 0.00 0.00 0.00 3.32
2759 3132 4.517832 AGGAACCGAACAAATTCCAAGTAC 59.482 41.667 5.13 0.00 43.75 2.73
2762 3135 4.584327 AAGGAACCGAACAAATTCCAAG 57.416 40.909 5.13 0.00 43.75 3.61
2769 3142 3.193691 TCAGCAAAAAGGAACCGAACAAA 59.806 39.130 0.00 0.00 0.00 2.83
2817 3190 4.710324 ACACTTCCATTACCGAGAACAAA 58.290 39.130 0.00 0.00 0.00 2.83
2825 3198 3.606687 AGCCTAAACACTTCCATTACCG 58.393 45.455 0.00 0.00 0.00 4.02
2827 3200 7.430441 TGAAAAAGCCTAAACACTTCCATTAC 58.570 34.615 0.00 0.00 0.00 1.89
2873 3246 4.789012 AACAAAATAGATGCACCACCAG 57.211 40.909 0.00 0.00 0.00 4.00
2948 3321 1.153289 CGGACCAGGGCTTGAGATG 60.153 63.158 0.00 0.00 0.00 2.90
2970 3343 1.071605 GTGAATGATAGGCGATCGGC 58.928 55.000 32.17 32.17 37.38 5.54
2973 3346 4.521130 TGTAGGTGAATGATAGGCGATC 57.479 45.455 0.10 0.10 34.84 3.69
2994 3367 2.821366 CGCCGCATTCAGCTCCTT 60.821 61.111 0.00 0.00 42.61 3.36
3077 3450 0.607217 TCACCTCGTTGCCGTCTAGA 60.607 55.000 0.00 0.00 35.01 2.43
3080 3453 1.745320 AACTCACCTCGTTGCCGTCT 61.745 55.000 0.00 0.00 35.01 4.18
3100 3473 4.700213 ACTAAACTGCCAATAGAACGCATT 59.300 37.500 0.00 0.00 0.00 3.56
3104 3477 7.065324 TCCAATTACTAAACTGCCAATAGAACG 59.935 37.037 0.00 0.00 0.00 3.95
3120 3497 7.413988 CGAACATGACTGCAATTCCAATTACTA 60.414 37.037 0.00 0.00 0.00 1.82
3122 3499 5.512788 CGAACATGACTGCAATTCCAATTAC 59.487 40.000 0.00 0.00 0.00 1.89
3161 3538 8.475639 ACACTTTAGCTAGAAAATATCTTCCGA 58.524 33.333 0.00 0.00 39.71 4.55
3189 3566 1.526887 CACACTGTCGTTCATGTGACC 59.473 52.381 11.17 0.00 44.20 4.02
3205 3582 7.293745 CACATCAGTTTAACTTCTCATCACAC 58.706 38.462 0.00 0.00 0.00 3.82
3230 3607 2.352960 GCGATCCATTCTTGAACTCACC 59.647 50.000 0.00 0.00 0.00 4.02
3231 3608 3.002791 TGCGATCCATTCTTGAACTCAC 58.997 45.455 0.00 0.00 0.00 3.51
3232 3609 3.264947 CTGCGATCCATTCTTGAACTCA 58.735 45.455 0.00 0.00 0.00 3.41
3288 3665 6.554982 ACCTCAGTAAACCATAGCATAGATCA 59.445 38.462 0.00 0.00 0.00 2.92
3320 3697 5.416952 CCTCACAAGCCTCACTTTTCATAAT 59.583 40.000 0.00 0.00 36.04 1.28
3355 3734 5.062683 CAGCACATACAAGCGGATCATATAC 59.937 44.000 0.00 0.00 35.48 1.47
3429 3809 4.999950 CCATAACTTCTGTGCAGAACTCTT 59.000 41.667 10.26 5.59 42.06 2.85
3459 3839 0.548031 ATTCGGGTGATGCATCCTGT 59.452 50.000 23.67 0.00 31.31 4.00
3502 3882 0.179702 GCCTCTGGTCATCATCAGCA 59.820 55.000 0.00 0.00 0.00 4.41
3514 3894 6.491745 TGTATTCATAGACTAGAAGCCTCTGG 59.508 42.308 0.00 0.00 36.28 3.86
3524 3904 6.350864 CCCAGAGGCATGTATTCATAGACTAG 60.351 46.154 0.00 0.00 32.47 2.57
3581 3961 6.593770 CACACACACACACATATATGGTAGTT 59.406 38.462 16.96 0.00 0.00 2.24
3582 3962 6.106003 CACACACACACACATATATGGTAGT 58.894 40.000 16.96 9.32 0.00 2.73
3583 3963 6.035975 CACACACACACACACATATATGGTAG 59.964 42.308 16.96 8.73 0.00 3.18
3584 3964 5.872070 CACACACACACACACATATATGGTA 59.128 40.000 16.96 0.00 0.00 3.25
3587 3967 5.179182 ACACACACACACACACACATATATG 59.821 40.000 11.29 11.29 0.00 1.78
3589 3969 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
3590 3970 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
3591 3971 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
3592 3972 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
3593 3973 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3594 3974 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3595 3975 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3596 3976 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3597 3977 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3598 3978 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3599 3979 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3600 3980 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3601 3981 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3602 3982 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3603 3983 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3604 3984 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3605 3985 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3606 3986 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3607 3987 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3608 3988 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3609 3989 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3610 3990 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3611 3991 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3612 3992 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3613 3993 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3614 3994 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3615 3995 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3616 3996 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3617 3997 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3618 3998 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3619 3999 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
3620 4000 1.438651 AGACACACACACACACACAC 58.561 50.000 0.00 0.00 0.00 3.82
3621 4001 2.177394 AAGACACACACACACACACA 57.823 45.000 0.00 0.00 0.00 3.72
3622 4002 2.742053 AGAAAGACACACACACACACAC 59.258 45.455 0.00 0.00 0.00 3.82
3623 4003 3.000041 GAGAAAGACACACACACACACA 59.000 45.455 0.00 0.00 0.00 3.72
3624 4004 3.262420 AGAGAAAGACACACACACACAC 58.738 45.455 0.00 0.00 0.00 3.82
3625 4005 3.610040 AGAGAAAGACACACACACACA 57.390 42.857 0.00 0.00 0.00 3.72
3626 4006 4.946784 AAAGAGAAAGACACACACACAC 57.053 40.909 0.00 0.00 0.00 3.82
3739 4119 5.779241 TCCTTGTATTCCAATCAAGAGGT 57.221 39.130 5.83 0.00 40.35 3.85
3787 4167 0.461339 CATGCAAATGCTTCAGGCCC 60.461 55.000 0.00 0.00 42.66 5.80
3810 4190 1.951209 TATGACAGGAGGGTTGCAGA 58.049 50.000 0.00 0.00 0.00 4.26
3850 4230 3.781079 TCCTCGCCAAGCAAAATATTG 57.219 42.857 0.00 0.00 39.65 1.90
3878 4258 0.169009 CCAAAGTCGGCTAGCTTTGC 59.831 55.000 15.72 0.00 45.91 3.68
4005 4385 5.455392 CAAAGCTGTAAACATCTGACTTGG 58.545 41.667 0.00 0.00 0.00 3.61
4063 4444 5.592282 TCTGATTCGACTCTGATCTAAAGCT 59.408 40.000 8.05 0.00 0.00 3.74
4127 4508 9.929180 AGTTCTACAAAAGAAAAAGAAAAAGCT 57.071 25.926 0.00 0.00 45.78 3.74
4250 4632 9.515226 AAACTTATGATGCTTCTACCAGTTTTA 57.485 29.630 0.88 0.00 29.71 1.52
4345 4747 5.236911 GCCAAGAAGAATCTTATCTCAGCAG 59.763 44.000 0.00 0.00 44.11 4.24
4449 4851 7.402071 AGGGTACTTAAGATGTACATTGAAGGA 59.598 37.037 20.49 14.14 41.27 3.36
4454 4856 8.041323 AGACAAGGGTACTTAAGATGTACATTG 58.959 37.037 10.30 12.38 41.27 2.82
4470 4872 7.986889 ACTCGTTTTACTTTTTAGACAAGGGTA 59.013 33.333 0.00 0.00 0.00 3.69
4570 4973 3.768757 CCAACATTGCAAAATCCCTCCTA 59.231 43.478 1.71 0.00 0.00 2.94
4601 5004 2.028476 TGCTGTACTGATTACCAAGCGT 60.028 45.455 3.61 0.00 34.03 5.07
4633 5036 1.339727 GCAACGGAAAGGACCTGGTAT 60.340 52.381 0.00 0.00 0.00 2.73
4763 5166 2.289072 GGTGAACTTGAGCTGCTGACTA 60.289 50.000 7.01 0.00 0.00 2.59
4893 5302 6.270231 GGAATGGGGAGTAGAGCTTTCTTATA 59.730 42.308 0.00 0.00 0.00 0.98
4896 5305 3.201045 GGAATGGGGAGTAGAGCTTTCTT 59.799 47.826 0.00 0.00 0.00 2.52
4898 5307 2.483889 CGGAATGGGGAGTAGAGCTTTC 60.484 54.545 0.00 0.00 0.00 2.62
4899 5308 1.486726 CGGAATGGGGAGTAGAGCTTT 59.513 52.381 0.00 0.00 0.00 3.51
5078 5490 1.945394 CACATATGACAAGCCTCAGCC 59.055 52.381 10.38 0.00 41.25 4.85
5112 5532 7.519032 AGTATCCTCAACTACTATGAAGCTC 57.481 40.000 0.00 0.00 0.00 4.09
5183 5603 2.693069 GCTGAAGAGCACATGTACAGT 58.307 47.619 0.00 0.00 45.46 3.55
5286 5712 4.957296 AGTGACGACCTAGATGTTTTGTT 58.043 39.130 0.00 0.00 0.00 2.83
5293 5719 3.577649 ACACAAGTGACGACCTAGATG 57.422 47.619 7.28 0.00 0.00 2.90
5302 5728 6.434596 TGGAAATATGAAAACACAAGTGACG 58.565 36.000 7.28 0.00 0.00 4.35
5394 5821 3.904800 TGACACAAGAGTCAGGAACAA 57.095 42.857 0.00 0.00 43.18 2.83
5412 5839 1.763120 AGGACATGCAACTGCCTGA 59.237 52.632 13.04 0.00 38.67 3.86
5588 6027 8.062065 TGTTCCAGTGTCTTATTTGTTCTTTT 57.938 30.769 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.