Multiple sequence alignment - TraesCS4B01G197500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G197500 chr4B 100.000 6797 0 0 1 6797 426103627 426110423 0.000000e+00 12552.0
1 TraesCS4B01G197500 chr4B 92.141 509 22 7 3778 4273 426141009 426141512 0.000000e+00 702.0
2 TraesCS4B01G197500 chr4B 91.732 508 30 5 3778 4273 623158328 623157821 0.000000e+00 695.0
3 TraesCS4B01G197500 chr4B 89.759 332 32 2 4457 4787 426141552 426141882 2.270000e-114 424.0
4 TraesCS4B01G197500 chr4B 88.822 331 35 2 4457 4786 623157784 623157455 8.210000e-109 405.0
5 TraesCS4B01G197500 chr4B 89.773 264 24 2 2346 2609 426140040 426140300 1.090000e-87 335.0
6 TraesCS4B01G197500 chr4B 85.714 91 6 3 6084 6167 259199177 259199087 9.390000e-14 89.8
7 TraesCS4B01G197500 chr2B 96.825 2457 56 10 2343 4786 579578582 579576135 0.000000e+00 4085.0
8 TraesCS4B01G197500 chr2B 87.273 330 32 3 4457 4786 692457816 692457497 1.080000e-97 368.0
9 TraesCS4B01G197500 chr2B 91.255 263 23 0 2341 2603 150889356 150889094 6.480000e-95 359.0
10 TraesCS4B01G197500 chr2B 83.193 119 13 5 6084 6197 795546080 795545964 1.210000e-17 102.0
11 TraesCS4B01G197500 chr2B 90.625 64 6 0 6407 6470 21539493 21539556 1.210000e-12 86.1
12 TraesCS4B01G197500 chr2B 91.803 61 5 0 5298 5358 756555454 756555394 1.210000e-12 86.1
13 TraesCS4B01G197500 chr3B 89.604 1943 158 22 2346 4273 602286627 602284714 0.000000e+00 2429.0
14 TraesCS4B01G197500 chr3B 92.300 961 56 6 3321 4273 238829282 238828332 0.000000e+00 1349.0
15 TraesCS4B01G197500 chr3B 89.193 805 78 6 2340 3139 238830096 238829296 0.000000e+00 996.0
16 TraesCS4B01G197500 chr3B 90.891 516 38 4 3397 3911 95571808 95571301 0.000000e+00 684.0
17 TraesCS4B01G197500 chr3B 90.606 330 29 2 4457 4786 602284674 602284347 2.910000e-118 436.0
18 TraesCS4B01G197500 chr3B 89.796 294 26 4 4504 4794 238827831 238827539 2.310000e-99 374.0
19 TraesCS4B01G197500 chr3B 89.888 267 24 1 2959 3225 95572188 95571925 2.350000e-89 340.0
20 TraesCS4B01G197500 chr3B 93.443 61 4 0 5298 5358 407185275 407185335 2.610000e-14 91.6
21 TraesCS4B01G197500 chr3B 91.525 59 5 0 5300 5358 310291515 310291457 1.570000e-11 82.4
22 TraesCS4B01G197500 chr3A 88.781 1952 166 24 2346 4273 598542614 598540692 0.000000e+00 2342.0
23 TraesCS4B01G197500 chr3A 89.048 977 79 19 2333 3297 530942006 530942966 0.000000e+00 1186.0
24 TraesCS4B01G197500 chr3A 87.688 333 39 2 4457 4788 531078194 531078525 2.970000e-103 387.0
25 TraesCS4B01G197500 chr3A 89.450 218 23 0 4569 4786 530942235 530942018 6.710000e-70 276.0
26 TraesCS4B01G197500 chr3A 84.146 164 23 3 1143 1304 638074547 638074385 9.130000e-34 156.0
27 TraesCS4B01G197500 chr6B 88.301 1983 162 24 2333 4273 643144704 643142750 0.000000e+00 2313.0
28 TraesCS4B01G197500 chr6B 90.774 336 29 2 4457 4792 643142710 643142377 1.340000e-121 448.0
29 TraesCS4B01G197500 chr4D 94.276 1415 40 17 958 2340 344109715 344111120 0.000000e+00 2126.0
30 TraesCS4B01G197500 chr4D 91.987 1198 43 27 4784 5965 344111112 344112272 0.000000e+00 1631.0
31 TraesCS4B01G197500 chr4D 95.039 383 18 1 446 828 344109028 344109409 9.750000e-168 601.0
32 TraesCS4B01G197500 chr4D 81.886 403 40 13 58 435 344108261 344108655 6.620000e-80 309.0
33 TraesCS4B01G197500 chr4D 92.424 198 14 1 6337 6533 344112731 344112928 1.440000e-71 281.0
34 TraesCS4B01G197500 chr4D 93.814 97 6 0 6700 6796 344113166 344113262 5.490000e-31 147.0
35 TraesCS4B01G197500 chr4D 95.588 68 3 0 5229 5296 344111598 344111665 7.210000e-20 110.0
36 TraesCS4B01G197500 chr4D 96.226 53 2 0 6084 6136 102140751 102140699 3.380000e-13 87.9
37 TraesCS4B01G197500 chr4D 92.063 63 3 2 5298 5358 468691457 468691395 3.380000e-13 87.9
38 TraesCS4B01G197500 chr4A 94.113 1274 42 13 1101 2345 121506161 121504892 0.000000e+00 1906.0
39 TraesCS4B01G197500 chr4A 92.333 600 19 14 5372 5963 121504383 121503803 0.000000e+00 828.0
40 TraesCS4B01G197500 chr4A 92.929 495 13 12 4787 5275 121504900 121504422 0.000000e+00 701.0
41 TraesCS4B01G197500 chr4A 89.116 294 9 10 668 939 121506715 121506423 1.810000e-90 344.0
42 TraesCS4B01G197500 chr4A 95.876 194 8 0 449 642 121506896 121506703 1.420000e-81 315.0
43 TraesCS4B01G197500 chr4A 89.076 238 20 3 201 435 121507508 121507274 2.400000e-74 291.0
44 TraesCS4B01G197500 chr4A 90.500 200 18 1 1 199 121507762 121507563 5.230000e-66 263.0
45 TraesCS4B01G197500 chr4A 91.209 182 15 1 6616 6796 121503048 121502867 5.260000e-61 246.0
46 TraesCS4B01G197500 chr4A 80.745 161 24 5 5983 6136 193958178 193958338 1.200000e-22 119.0
47 TraesCS4B01G197500 chr4A 85.321 109 11 5 6086 6191 119801349 119801243 2.590000e-19 108.0
48 TraesCS4B01G197500 chr4A 90.476 63 5 1 6075 6136 267147048 267146986 1.570000e-11 82.4
49 TraesCS4B01G197500 chr1B 85.460 1795 184 28 2512 4272 442629276 442627525 0.000000e+00 1797.0
50 TraesCS4B01G197500 chr1B 87.156 109 9 4 6084 6189 534448964 534448858 1.200000e-22 119.0
51 TraesCS4B01G197500 chr1B 96.226 53 2 0 6084 6136 392254721 392254773 3.380000e-13 87.9
52 TraesCS4B01G197500 chr6A 90.505 653 51 4 3630 4273 428424033 428424683 0.000000e+00 852.0
53 TraesCS4B01G197500 chr7D 86.427 722 79 15 2337 3044 599400719 599401435 0.000000e+00 773.0
54 TraesCS4B01G197500 chr7D 83.951 162 26 0 1146 1307 134178575 134178414 9.130000e-34 156.0
55 TraesCS4B01G197500 chr7D 84.286 70 9 1 6188 6255 181345057 181344988 4.400000e-07 67.6
56 TraesCS4B01G197500 chr7A 85.775 710 82 13 2337 3038 691524386 691525084 0.000000e+00 734.0
57 TraesCS4B01G197500 chr7A 84.727 622 55 20 3078 3677 691644728 691644125 2.730000e-163 586.0
58 TraesCS4B01G197500 chr7A 88.219 365 32 10 2681 3038 691645094 691644734 6.300000e-115 425.0
59 TraesCS4B01G197500 chr7A 83.333 162 27 0 1146 1307 133058859 133058698 4.250000e-32 150.0
60 TraesCS4B01G197500 chr3D 90.727 550 44 5 2527 3071 481063635 481063088 0.000000e+00 726.0
61 TraesCS4B01G197500 chr3D 83.871 155 22 3 1143 1295 496733042 496733195 1.980000e-30 145.0
62 TraesCS4B01G197500 chr3D 90.625 64 6 0 5295 5358 607079124 607079187 1.210000e-12 86.1
63 TraesCS4B01G197500 chr3D 90.323 62 6 0 5297 5358 43577929 43577868 1.570000e-11 82.4
64 TraesCS4B01G197500 chr3D 90.164 61 6 0 5298 5358 576747459 576747399 5.650000e-11 80.5
65 TraesCS4B01G197500 chrUn 92.553 470 22 4 3816 4273 9636007 9635539 0.000000e+00 662.0
66 TraesCS4B01G197500 chr7B 83.702 724 85 21 2337 3038 678738932 678739644 0.000000e+00 652.0
67 TraesCS4B01G197500 chr7B 82.584 178 29 2 1146 1323 96281871 96281696 9.130000e-34 156.0
68 TraesCS4B01G197500 chr6D 86.600 597 57 14 3081 3675 436233849 436234424 7.430000e-179 638.0
69 TraesCS4B01G197500 chr5D 89.583 144 10 2 4293 4436 371440615 371440477 1.950000e-40 178.0
70 TraesCS4B01G197500 chr2D 85.417 144 19 2 6329 6471 596546169 596546027 1.530000e-31 148.0
71 TraesCS4B01G197500 chr2D 93.750 48 3 0 4345 4392 582494556 582494509 9.460000e-09 73.1
72 TraesCS4B01G197500 chr2A 84.404 109 16 1 5979 6086 719739068 719738960 9.320000e-19 106.0
73 TraesCS4B01G197500 chr2A 93.443 61 4 0 5298 5358 16965349 16965409 2.610000e-14 91.6
74 TraesCS4B01G197500 chr2A 89.062 64 7 0 6407 6470 14279837 14279774 5.650000e-11 80.5
75 TraesCS4B01G197500 chr2A 85.333 75 7 3 5298 5372 666029877 666029947 2.630000e-09 75.0
76 TraesCS4B01G197500 chr5B 86.598 97 9 2 4293 4389 441446111 441446019 3.350000e-18 104.0
77 TraesCS4B01G197500 chr1A 84.259 108 14 3 6084 6189 573690700 573690594 1.210000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G197500 chr4B 426103627 426110423 6796 False 12552.000000 12552 100.000000 1 6797 1 chr4B.!!$F1 6796
1 TraesCS4B01G197500 chr4B 623157455 623158328 873 True 550.000000 695 90.277000 3778 4786 2 chr4B.!!$R2 1008
2 TraesCS4B01G197500 chr4B 426140040 426141882 1842 False 487.000000 702 90.557667 2346 4787 3 chr4B.!!$F2 2441
3 TraesCS4B01G197500 chr2B 579576135 579578582 2447 True 4085.000000 4085 96.825000 2343 4786 1 chr2B.!!$R2 2443
4 TraesCS4B01G197500 chr3B 602284347 602286627 2280 True 1432.500000 2429 90.105000 2346 4786 2 chr3B.!!$R4 2440
5 TraesCS4B01G197500 chr3B 238827539 238830096 2557 True 906.333333 1349 90.429667 2340 4794 3 chr3B.!!$R3 2454
6 TraesCS4B01G197500 chr3B 95571301 95572188 887 True 512.000000 684 90.389500 2959 3911 2 chr3B.!!$R2 952
7 TraesCS4B01G197500 chr3A 598540692 598542614 1922 True 2342.000000 2342 88.781000 2346 4273 1 chr3A.!!$R2 1927
8 TraesCS4B01G197500 chr3A 530942006 530942966 960 False 1186.000000 1186 89.048000 2333 3297 1 chr3A.!!$F1 964
9 TraesCS4B01G197500 chr6B 643142377 643144704 2327 True 1380.500000 2313 89.537500 2333 4792 2 chr6B.!!$R1 2459
10 TraesCS4B01G197500 chr4D 344108261 344113262 5001 False 743.571429 2126 92.144857 58 6796 7 chr4D.!!$F1 6738
11 TraesCS4B01G197500 chr4A 121502867 121507762 4895 True 611.750000 1906 91.894000 1 6796 8 chr4A.!!$R3 6795
12 TraesCS4B01G197500 chr1B 442627525 442629276 1751 True 1797.000000 1797 85.460000 2512 4272 1 chr1B.!!$R1 1760
13 TraesCS4B01G197500 chr6A 428424033 428424683 650 False 852.000000 852 90.505000 3630 4273 1 chr6A.!!$F1 643
14 TraesCS4B01G197500 chr7D 599400719 599401435 716 False 773.000000 773 86.427000 2337 3044 1 chr7D.!!$F1 707
15 TraesCS4B01G197500 chr7A 691524386 691525084 698 False 734.000000 734 85.775000 2337 3038 1 chr7A.!!$F1 701
16 TraesCS4B01G197500 chr7A 691644125 691645094 969 True 505.500000 586 86.473000 2681 3677 2 chr7A.!!$R2 996
17 TraesCS4B01G197500 chr3D 481063088 481063635 547 True 726.000000 726 90.727000 2527 3071 1 chr3D.!!$R2 544
18 TraesCS4B01G197500 chr7B 678738932 678739644 712 False 652.000000 652 83.702000 2337 3038 1 chr7B.!!$F1 701
19 TraesCS4B01G197500 chr6D 436233849 436234424 575 False 638.000000 638 86.600000 3081 3675 1 chr6D.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 928 0.597377 GTGGAAAAGGCAAACTGCGG 60.597 55.000 0.00 0.0 46.21 5.69 F
1366 2017 0.319555 TGCTAGCTTCTGACGCGTTT 60.320 50.000 15.53 0.0 0.00 3.60 F
1927 2588 0.165079 TCGCGACGGCAATTCTTTTC 59.835 50.000 3.71 0.0 39.92 2.29 F
2292 2972 1.120530 TACCCGATCTGCCTTTCCTC 58.879 55.000 0.00 0.0 0.00 3.71 F
2302 2982 1.157585 GCCTTTCCTCGTCCTGTTTC 58.842 55.000 0.00 0.0 0.00 2.78 F
2562 3249 1.612462 CCCCTCCACCTTTACGGAAAC 60.612 57.143 0.00 0.0 36.31 2.78 F
4051 5323 1.831389 TTTTGTGCTCAGTCGCGCTC 61.831 55.000 5.56 0.0 40.87 5.03 F
5473 7102 0.528901 ACGTGCGACACAGCTTTGTA 60.529 50.000 5.28 0.0 38.13 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 2555 0.526662 TCGCGAGGAGGAAGAAGAAC 59.473 55.000 3.71 0.00 0.00 3.01 R
3362 4611 0.463116 GACAGTGGTGGTGGTTCGTT 60.463 55.000 0.00 0.00 0.00 3.85 R
3363 4612 1.145377 GACAGTGGTGGTGGTTCGT 59.855 57.895 0.00 0.00 0.00 3.85 R
4030 5302 0.442310 GCGCGACTGAGCACAAAATA 59.558 50.000 12.10 0.00 41.01 1.40 R
4051 5323 4.944372 GGGCCATACGAGGACGCG 62.944 72.222 3.53 3.53 43.96 6.01 R
4325 5610 2.033927 TGATGATCTACTGCGACTCAGC 59.966 50.000 0.00 0.00 46.76 4.26 R
5685 7327 1.005630 ACGAGCGCTGCTTCTTCTT 60.006 52.632 18.48 0.00 39.88 2.52 R
6660 8732 0.311790 CAAATCGCACAACTGCAGGT 59.688 50.000 19.93 9.19 44.50 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.954382 GTTCCTCCTTTCACACAACCC 59.046 52.381 0.00 0.00 0.00 4.11
22 23 2.696775 TCCTCCTTTCACACAACCCTA 58.303 47.619 0.00 0.00 0.00 3.53
24 25 2.427506 CTCCTTTCACACAACCCTAGC 58.572 52.381 0.00 0.00 0.00 3.42
38 39 1.153745 CTAGCCGTCACTCCACTGC 60.154 63.158 0.00 0.00 0.00 4.40
55 56 2.434336 ACTGCTCCAGTCACTGTTGTTA 59.566 45.455 3.56 0.00 41.21 2.41
123 125 3.140814 GGAACCCCGCTGATTGCC 61.141 66.667 0.00 0.00 38.78 4.52
141 143 2.109128 TGCCATCCTACACTGGGAAAAA 59.891 45.455 0.00 0.00 36.37 1.94
157 159 4.021807 GGGAAAAAGGCGATAAGGTTTTGA 60.022 41.667 0.00 0.00 0.00 2.69
159 161 4.783764 AAAAGGCGATAAGGTTTTGAGG 57.216 40.909 0.00 0.00 0.00 3.86
164 166 2.939640 GCGATAAGGTTTTGAGGGAGCA 60.940 50.000 0.00 0.00 0.00 4.26
176 178 1.675641 GGGAGCATCTTGGCACGTT 60.676 57.895 0.00 0.00 35.83 3.99
199 201 1.135344 CCCTCTTCGTCTTCGTCCTTC 60.135 57.143 0.00 0.00 38.33 3.46
219 274 2.108976 CGACCCCATGGATGACGG 59.891 66.667 15.22 7.99 34.81 4.79
221 276 3.014538 ACCCCATGGATGACGGCA 61.015 61.111 15.22 0.00 34.81 5.69
289 348 4.857509 ATCCTAGCCTAAACTAGCGAAG 57.142 45.455 0.00 0.00 38.68 3.79
295 354 4.477249 AGCCTAAACTAGCGAAGGGTATA 58.523 43.478 7.56 0.00 38.05 1.47
296 355 4.280425 AGCCTAAACTAGCGAAGGGTATAC 59.720 45.833 7.56 0.00 38.05 1.47
300 359 4.762956 AACTAGCGAAGGGTATACGATC 57.237 45.455 0.00 0.00 0.00 3.69
335 394 7.880195 CCCTATTTAACTGTTCATATGCTAGCT 59.120 37.037 17.23 4.07 0.00 3.32
430 489 5.109210 TGAGTAATACATCCAGCAAACTCG 58.891 41.667 0.00 0.00 35.90 4.18
439 498 3.822607 AGCAAACTCGCTGTAGAGG 57.177 52.632 7.09 0.00 41.85 3.69
442 501 1.336887 GCAAACTCGCTGTAGAGGACA 60.337 52.381 7.09 0.00 42.31 4.02
477 928 0.597377 GTGGAAAAGGCAAACTGCGG 60.597 55.000 0.00 0.00 46.21 5.69
478 929 0.753479 TGGAAAAGGCAAACTGCGGA 60.753 50.000 0.00 0.00 46.21 5.54
634 1085 5.563842 CGCATTTTTCACCTAGATCAGTTC 58.436 41.667 0.00 0.00 0.00 3.01
681 1132 3.131478 GGCCGGTTCATTCCCACG 61.131 66.667 1.90 0.00 0.00 4.94
769 1220 6.037172 CCTCAATAAAAACACCGGATCTACAG 59.963 42.308 9.46 0.00 0.00 2.74
770 1221 5.878116 TCAATAAAAACACCGGATCTACAGG 59.122 40.000 9.46 0.00 39.69 4.00
824 1275 2.584391 GGACACCGGCAGAAGAGGT 61.584 63.158 0.00 0.00 39.12 3.85
936 1409 2.081462 CTGTTTCCGTTATCCACCCAC 58.919 52.381 0.00 0.00 0.00 4.61
939 1412 1.564483 TTCCGTTATCCACCCACCCC 61.564 60.000 0.00 0.00 0.00 4.95
940 1413 2.593420 CGTTATCCACCCACCCCC 59.407 66.667 0.00 0.00 0.00 5.40
955 1428 4.733725 CCCCCTCCACCCTCGGAA 62.734 72.222 0.00 0.00 33.65 4.30
956 1429 2.366972 CCCCTCCACCCTCGGAAT 60.367 66.667 0.00 0.00 33.65 3.01
985 1612 4.039609 ACTCCGGTCTATATAAAAACCCCG 59.960 45.833 0.00 0.00 0.00 5.73
986 1613 3.069289 CCGGTCTATATAAAAACCCCGC 58.931 50.000 0.00 0.00 33.08 6.13
987 1614 3.069289 CGGTCTATATAAAAACCCCGCC 58.931 50.000 0.00 0.00 0.00 6.13
988 1615 3.415212 GGTCTATATAAAAACCCCGCCC 58.585 50.000 0.00 0.00 0.00 6.13
990 1617 2.038820 TCTATATAAAAACCCCGCCCGG 59.961 50.000 0.00 0.00 0.00 5.73
1040 1667 2.890109 GCATCGCCATTCAGCTCCG 61.890 63.158 0.00 0.00 0.00 4.63
1366 2017 0.319555 TGCTAGCTTCTGACGCGTTT 60.320 50.000 15.53 0.00 0.00 3.60
1399 2050 1.446272 GACGTTCAAGGAGGCGGAG 60.446 63.158 0.00 0.00 0.00 4.63
1609 2260 0.451383 CGCTCGCAAATCCAAATCCA 59.549 50.000 0.00 0.00 0.00 3.41
1678 2333 3.732212 CGATCACATGGCTCTGGAATTA 58.268 45.455 0.00 0.00 0.00 1.40
1686 2341 6.543465 CACATGGCTCTGGAATTAATCAACTA 59.457 38.462 0.00 0.00 0.00 2.24
1894 2555 1.575244 CACCTCCTGCATCACGTATG 58.425 55.000 0.00 0.00 38.74 2.39
1921 2582 2.509336 CTCCTCGCGACGGCAATT 60.509 61.111 3.71 0.00 39.92 2.32
1927 2588 0.165079 TCGCGACGGCAATTCTTTTC 59.835 50.000 3.71 0.00 39.92 2.29
1931 2592 1.782023 CGACGGCAATTCTTTTCGACG 60.782 52.381 0.00 0.00 33.83 5.12
1965 2626 2.931325 CGAGAGTTCTCTGCTACGTAGT 59.069 50.000 22.98 1.00 42.34 2.73
1966 2627 4.111198 CGAGAGTTCTCTGCTACGTAGTA 58.889 47.826 22.98 18.10 40.73 1.82
2292 2972 1.120530 TACCCGATCTGCCTTTCCTC 58.879 55.000 0.00 0.00 0.00 3.71
2302 2982 1.157585 GCCTTTCCTCGTCCTGTTTC 58.842 55.000 0.00 0.00 0.00 2.78
2326 3010 8.370493 TCTACAGCATCAATATTAAACTGAGC 57.630 34.615 11.66 0.00 0.00 4.26
2451 3135 6.072175 TCCCTAAACTTGCAATGTATGTGAAC 60.072 38.462 0.00 0.00 0.00 3.18
2562 3249 1.612462 CCCCTCCACCTTTACGGAAAC 60.612 57.143 0.00 0.00 36.31 2.78
2961 4130 6.526325 TGCACGAGTAACATTTTCAATTATGC 59.474 34.615 0.00 0.00 0.00 3.14
3149 4328 4.057428 GACAGTCACGCCCTCGCT 62.057 66.667 0.00 0.00 39.84 4.93
3190 4373 2.186826 GTGTTGTGCGAGCCCAACT 61.187 57.895 20.38 0.00 41.16 3.16
3355 4604 9.911788 ACTATGACCATTAGAAACATTTCATCT 57.088 29.630 7.10 0.00 39.61 2.90
3360 4609 9.512435 GACCATTAGAAACATTTCATCTGAATG 57.488 33.333 7.10 7.61 39.61 2.67
3361 4610 7.977853 ACCATTAGAAACATTTCATCTGAATGC 59.022 33.333 7.10 0.00 39.61 3.56
3362 4611 7.977293 CCATTAGAAACATTTCATCTGAATGCA 59.023 33.333 7.10 0.00 39.61 3.96
3363 4612 9.361315 CATTAGAAACATTTCATCTGAATGCAA 57.639 29.630 7.10 0.00 39.61 4.08
3364 4613 8.746922 TTAGAAACATTTCATCTGAATGCAAC 57.253 30.769 7.10 0.00 39.61 4.17
3534 4789 3.570125 TGCCACCGTTTATGTGAAAATGA 59.430 39.130 0.00 0.00 35.74 2.57
3748 5010 4.580580 GCAGGAATAATTCTTAGGTGTGGG 59.419 45.833 0.00 0.00 0.00 4.61
4051 5323 1.831389 TTTTGTGCTCAGTCGCGCTC 61.831 55.000 5.56 0.00 40.87 5.03
4377 5662 7.389330 CGTCTTCTAGATGGCCTATATATCGAT 59.611 40.741 3.32 2.16 0.00 3.59
4682 6241 6.418057 TGATTGGCTTTGGACTAAATGTTT 57.582 33.333 0.00 0.00 0.00 2.83
4755 6314 6.009589 TGGACTAAACCATCACATTCATTGT 58.990 36.000 0.00 0.00 35.29 2.71
4828 6387 6.035843 CACTAATTTGTCTGCTTTGTGTGTT 58.964 36.000 0.00 0.00 0.00 3.32
4829 6388 6.197096 CACTAATTTGTCTGCTTTGTGTGTTC 59.803 38.462 0.00 0.00 0.00 3.18
4830 6389 4.717233 ATTTGTCTGCTTTGTGTGTTCA 57.283 36.364 0.00 0.00 0.00 3.18
4895 6454 1.474077 ACGCGGTAAGTTACCTACCAG 59.526 52.381 25.91 13.44 46.81 4.00
4896 6455 1.202336 CGCGGTAAGTTACCTACCAGG 60.202 57.143 25.91 12.81 46.81 4.45
4897 6456 2.102578 GCGGTAAGTTACCTACCAGGA 58.897 52.381 25.91 0.00 46.81 3.86
4898 6457 2.697229 GCGGTAAGTTACCTACCAGGAT 59.303 50.000 25.91 0.00 46.81 3.24
4966 6525 3.829948 TCGAGAATTAACGAGTGTCACC 58.170 45.455 0.00 0.00 34.49 4.02
5074 6633 2.508663 GGCACTTCTCGTACCCGC 60.509 66.667 0.00 0.00 0.00 6.13
5257 6871 1.075482 CCCACAGTCATGGTGCCTT 59.925 57.895 0.00 0.00 38.16 4.35
5275 6889 4.848562 CCTTCCAAAGGTAACCAACTTC 57.151 45.455 0.00 0.00 43.95 3.01
5296 6919 5.330455 TCGTCATCTCAAAGCTAGATTGT 57.670 39.130 0.00 0.00 31.22 2.71
5301 6927 7.043722 CGTCATCTCAAAGCTAGATTGTTACTC 60.044 40.741 0.00 0.00 31.22 2.59
5302 6928 7.223777 GTCATCTCAAAGCTAGATTGTTACTCC 59.776 40.741 0.00 0.00 31.22 3.85
5303 6929 5.978814 TCTCAAAGCTAGATTGTTACTCCC 58.021 41.667 0.00 0.00 0.00 4.30
5304 6930 5.721960 TCTCAAAGCTAGATTGTTACTCCCT 59.278 40.000 0.00 0.00 0.00 4.20
5305 6931 6.213600 TCTCAAAGCTAGATTGTTACTCCCTT 59.786 38.462 0.00 0.00 0.00 3.95
5306 6932 6.407202 TCAAAGCTAGATTGTTACTCCCTTC 58.593 40.000 0.00 0.00 0.00 3.46
5307 6933 4.657436 AGCTAGATTGTTACTCCCTTCG 57.343 45.455 0.00 0.00 0.00 3.79
5308 6934 4.024670 AGCTAGATTGTTACTCCCTTCGT 58.975 43.478 0.00 0.00 0.00 3.85
5309 6935 4.098196 AGCTAGATTGTTACTCCCTTCGTC 59.902 45.833 0.00 0.00 0.00 4.20
5310 6936 3.889520 AGATTGTTACTCCCTTCGTCC 57.110 47.619 0.00 0.00 0.00 4.79
5311 6937 2.500504 AGATTGTTACTCCCTTCGTCCC 59.499 50.000 0.00 0.00 0.00 4.46
5312 6938 1.719529 TTGTTACTCCCTTCGTCCCA 58.280 50.000 0.00 0.00 0.00 4.37
5313 6939 1.946984 TGTTACTCCCTTCGTCCCAT 58.053 50.000 0.00 0.00 0.00 4.00
5314 6940 3.104519 TGTTACTCCCTTCGTCCCATA 57.895 47.619 0.00 0.00 0.00 2.74
5315 6941 3.443052 TGTTACTCCCTTCGTCCCATAA 58.557 45.455 0.00 0.00 0.00 1.90
5316 6942 4.035112 TGTTACTCCCTTCGTCCCATAAT 58.965 43.478 0.00 0.00 0.00 1.28
5317 6943 4.141801 TGTTACTCCCTTCGTCCCATAATG 60.142 45.833 0.00 0.00 0.00 1.90
5318 6944 2.478292 ACTCCCTTCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
5319 6945 3.649843 ACTCCCTTCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
5320 6946 4.035112 ACTCCCTTCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
5321 6947 4.101119 ACTCCCTTCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
5322 6948 4.291792 TCCCTTCGTCCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
5323 6949 4.100498 TCCCTTCGTCCCATAATGTAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
5328 6954 5.789710 CGTCCCATAATGTAAGACGTTTT 57.210 39.130 0.00 0.00 43.89 2.43
5329 6955 6.890663 CGTCCCATAATGTAAGACGTTTTA 57.109 37.500 2.88 0.00 43.89 1.52
5330 6956 6.699063 CGTCCCATAATGTAAGACGTTTTAC 58.301 40.000 19.19 19.19 43.89 2.01
5332 6958 6.531240 GTCCCATAATGTAAGACGTTTTACGA 59.469 38.462 20.22 12.04 46.05 3.43
5333 6959 6.531240 TCCCATAATGTAAGACGTTTTACGAC 59.469 38.462 20.22 4.27 46.05 4.34
5334 6960 6.310956 CCCATAATGTAAGACGTTTTACGACA 59.689 38.462 20.22 9.37 46.05 4.35
5335 6961 7.010738 CCCATAATGTAAGACGTTTTACGACAT 59.989 37.037 20.22 11.03 46.05 3.06
5336 6962 8.385111 CCATAATGTAAGACGTTTTACGACATT 58.615 33.333 20.22 18.70 46.05 2.71
5339 6965 7.872163 ATGTAAGACGTTTTACGACATTACA 57.128 32.000 20.22 19.58 46.05 2.41
5340 6966 7.092710 TGTAAGACGTTTTACGACATTACAC 57.907 36.000 20.22 0.42 46.05 2.90
5341 6967 6.917477 TGTAAGACGTTTTACGACATTACACT 59.083 34.615 20.22 0.00 46.05 3.55
5342 6968 8.073167 TGTAAGACGTTTTACGACATTACACTA 58.927 33.333 20.22 0.21 46.05 2.74
5343 6969 7.558435 AAGACGTTTTACGACATTACACTAG 57.442 36.000 6.19 0.00 46.05 2.57
5344 6970 6.902341 AGACGTTTTACGACATTACACTAGA 58.098 36.000 6.19 0.00 46.05 2.43
5345 6971 7.020010 AGACGTTTTACGACATTACACTAGAG 58.980 38.462 6.19 0.00 46.05 2.43
5346 6972 6.672147 ACGTTTTACGACATTACACTAGAGT 58.328 36.000 6.19 0.00 46.05 3.24
5347 6973 6.798959 ACGTTTTACGACATTACACTAGAGTC 59.201 38.462 6.19 0.00 46.05 3.36
5348 6974 6.798476 CGTTTTACGACATTACACTAGAGTCA 59.202 38.462 0.00 0.00 46.05 3.41
5349 6975 7.324375 CGTTTTACGACATTACACTAGAGTCAA 59.676 37.037 0.00 0.00 46.05 3.18
5350 6976 8.971321 GTTTTACGACATTACACTAGAGTCAAA 58.029 33.333 0.00 0.00 0.00 2.69
5351 6977 9.531942 TTTTACGACATTACACTAGAGTCAAAA 57.468 29.630 0.00 0.00 0.00 2.44
5352 6978 9.531942 TTTACGACATTACACTAGAGTCAAAAA 57.468 29.630 0.00 0.00 0.00 1.94
5451 7080 1.448540 CGTCCCAGCTAGCAACCAG 60.449 63.158 18.83 0.54 0.00 4.00
5473 7102 0.528901 ACGTGCGACACAGCTTTGTA 60.529 50.000 5.28 0.00 38.13 2.41
5530 7171 2.941720 GCTGGCGAGATCTGATCTTTTT 59.058 45.455 20.40 0.00 40.38 1.94
5585 7226 3.745803 GCTGGGTGCAGCTGAAGC 61.746 66.667 20.43 18.08 44.31 3.86
5685 7327 3.136763 CTGCTGCACAAGAAGAAGAAGA 58.863 45.455 0.00 0.00 32.35 2.87
5686 7328 3.544684 TGCTGCACAAGAAGAAGAAGAA 58.455 40.909 0.00 0.00 0.00 2.52
5687 7329 3.562973 TGCTGCACAAGAAGAAGAAGAAG 59.437 43.478 0.00 0.00 0.00 2.85
5688 7330 3.812053 GCTGCACAAGAAGAAGAAGAAGA 59.188 43.478 0.00 0.00 0.00 2.87
5689 7331 4.274459 GCTGCACAAGAAGAAGAAGAAGAA 59.726 41.667 0.00 0.00 0.00 2.52
5690 7332 5.560567 GCTGCACAAGAAGAAGAAGAAGAAG 60.561 44.000 0.00 0.00 0.00 2.85
5694 7336 6.657888 CACAAGAAGAAGAAGAAGAAGAAGC 58.342 40.000 0.00 0.00 0.00 3.86
5794 7436 6.231211 AGTCTGTAACAAAGATTCATTCCGT 58.769 36.000 0.00 0.00 0.00 4.69
5802 7449 5.186797 ACAAAGATTCATTCCGTCTCTCTCT 59.813 40.000 0.00 0.00 0.00 3.10
5803 7450 5.514274 AAGATTCATTCCGTCTCTCTCTC 57.486 43.478 0.00 0.00 0.00 3.20
5804 7451 4.792068 AGATTCATTCCGTCTCTCTCTCT 58.208 43.478 0.00 0.00 0.00 3.10
5805 7452 4.821805 AGATTCATTCCGTCTCTCTCTCTC 59.178 45.833 0.00 0.00 0.00 3.20
5953 7600 0.455972 GTGTCTGAGCTCGCTGAGTC 60.456 60.000 9.64 0.92 31.39 3.36
5965 7612 1.199327 CGCTGAGTCGGTGAACTTAGA 59.801 52.381 6.68 0.00 35.48 2.10
5966 7613 2.729467 CGCTGAGTCGGTGAACTTAGAG 60.729 54.545 6.68 0.00 35.48 2.43
5967 7614 2.416162 GCTGAGTCGGTGAACTTAGAGG 60.416 54.545 0.00 0.00 35.48 3.69
5968 7615 2.820787 CTGAGTCGGTGAACTTAGAGGT 59.179 50.000 0.00 0.00 35.48 3.85
5969 7616 3.228453 TGAGTCGGTGAACTTAGAGGTT 58.772 45.455 0.00 0.00 0.00 3.50
5970 7617 3.005472 TGAGTCGGTGAACTTAGAGGTTG 59.995 47.826 0.00 0.00 0.00 3.77
5971 7618 2.963782 AGTCGGTGAACTTAGAGGTTGT 59.036 45.455 0.00 0.00 0.00 3.32
5972 7619 3.387050 AGTCGGTGAACTTAGAGGTTGTT 59.613 43.478 0.00 0.00 0.00 2.83
5973 7620 4.124970 GTCGGTGAACTTAGAGGTTGTTT 58.875 43.478 0.00 0.00 0.00 2.83
5974 7621 4.025145 GTCGGTGAACTTAGAGGTTGTTTG 60.025 45.833 0.00 0.00 0.00 2.93
5975 7622 3.250040 CGGTGAACTTAGAGGTTGTTTGG 59.750 47.826 0.00 0.00 0.00 3.28
5976 7623 4.204799 GGTGAACTTAGAGGTTGTTTGGT 58.795 43.478 0.00 0.00 0.00 3.67
5977 7624 4.643334 GGTGAACTTAGAGGTTGTTTGGTT 59.357 41.667 0.00 0.00 0.00 3.67
5978 7625 5.126545 GGTGAACTTAGAGGTTGTTTGGTTT 59.873 40.000 0.00 0.00 0.00 3.27
5979 7626 6.319405 GGTGAACTTAGAGGTTGTTTGGTTTA 59.681 38.462 0.00 0.00 0.00 2.01
5980 7627 7.013942 GGTGAACTTAGAGGTTGTTTGGTTTAT 59.986 37.037 0.00 0.00 0.00 1.40
5981 7628 9.059260 GTGAACTTAGAGGTTGTTTGGTTTATA 57.941 33.333 0.00 0.00 0.00 0.98
5982 7629 9.280174 TGAACTTAGAGGTTGTTTGGTTTATAG 57.720 33.333 0.00 0.00 0.00 1.31
5983 7630 7.683437 ACTTAGAGGTTGTTTGGTTTATAGC 57.317 36.000 0.00 0.00 0.00 2.97
5984 7631 6.657966 ACTTAGAGGTTGTTTGGTTTATAGCC 59.342 38.462 0.00 0.00 0.00 3.93
5985 7632 4.993028 AGAGGTTGTTTGGTTTATAGCCA 58.007 39.130 0.00 0.00 0.00 4.75
5986 7633 4.765339 AGAGGTTGTTTGGTTTATAGCCAC 59.235 41.667 0.00 0.00 35.46 5.01
5987 7634 4.475345 AGGTTGTTTGGTTTATAGCCACA 58.525 39.130 0.00 0.00 35.46 4.17
5988 7635 5.083821 AGGTTGTTTGGTTTATAGCCACAT 58.916 37.500 0.00 0.00 35.46 3.21
5989 7636 5.542251 AGGTTGTTTGGTTTATAGCCACATT 59.458 36.000 0.00 0.00 35.46 2.71
5990 7637 6.042666 AGGTTGTTTGGTTTATAGCCACATTT 59.957 34.615 0.00 0.00 35.46 2.32
5991 7638 6.708502 GGTTGTTTGGTTTATAGCCACATTTT 59.291 34.615 0.00 0.00 35.46 1.82
5992 7639 7.307692 GGTTGTTTGGTTTATAGCCACATTTTG 60.308 37.037 0.00 0.00 35.46 2.44
5993 7640 5.698545 TGTTTGGTTTATAGCCACATTTTGC 59.301 36.000 0.00 0.00 35.46 3.68
5994 7641 4.464069 TGGTTTATAGCCACATTTTGCC 57.536 40.909 0.00 0.00 0.00 4.52
5995 7642 3.834813 TGGTTTATAGCCACATTTTGCCA 59.165 39.130 0.00 0.00 0.00 4.92
5996 7643 4.469227 TGGTTTATAGCCACATTTTGCCAT 59.531 37.500 0.00 0.00 0.00 4.40
5997 7644 5.658634 TGGTTTATAGCCACATTTTGCCATA 59.341 36.000 0.00 0.00 0.00 2.74
5998 7645 5.983118 GGTTTATAGCCACATTTTGCCATAC 59.017 40.000 0.00 0.00 0.00 2.39
5999 7646 5.782893 TTATAGCCACATTTTGCCATACC 57.217 39.130 0.00 0.00 0.00 2.73
6000 7647 2.236489 AGCCACATTTTGCCATACCT 57.764 45.000 0.00 0.00 0.00 3.08
6001 7648 2.102578 AGCCACATTTTGCCATACCTC 58.897 47.619 0.00 0.00 0.00 3.85
6002 7649 1.824230 GCCACATTTTGCCATACCTCA 59.176 47.619 0.00 0.00 0.00 3.86
6003 7650 2.431782 GCCACATTTTGCCATACCTCAT 59.568 45.455 0.00 0.00 0.00 2.90
6004 7651 3.491447 GCCACATTTTGCCATACCTCATC 60.491 47.826 0.00 0.00 0.00 2.92
6005 7652 3.956199 CCACATTTTGCCATACCTCATCT 59.044 43.478 0.00 0.00 0.00 2.90
6006 7653 4.403432 CCACATTTTGCCATACCTCATCTT 59.597 41.667 0.00 0.00 0.00 2.40
6007 7654 5.593909 CCACATTTTGCCATACCTCATCTTA 59.406 40.000 0.00 0.00 0.00 2.10
6008 7655 6.238842 CCACATTTTGCCATACCTCATCTTAG 60.239 42.308 0.00 0.00 0.00 2.18
6009 7656 6.543465 CACATTTTGCCATACCTCATCTTAGA 59.457 38.462 0.00 0.00 0.00 2.10
6010 7657 6.543831 ACATTTTGCCATACCTCATCTTAGAC 59.456 38.462 0.00 0.00 0.00 2.59
6011 7658 5.692115 TTTGCCATACCTCATCTTAGACA 57.308 39.130 0.00 0.00 0.00 3.41
6012 7659 5.894298 TTGCCATACCTCATCTTAGACAT 57.106 39.130 0.00 0.00 0.00 3.06
6013 7660 6.994421 TTGCCATACCTCATCTTAGACATA 57.006 37.500 0.00 0.00 0.00 2.29
6014 7661 7.559335 TTGCCATACCTCATCTTAGACATAT 57.441 36.000 0.00 0.00 0.00 1.78
6015 7662 7.559335 TGCCATACCTCATCTTAGACATATT 57.441 36.000 0.00 0.00 0.00 1.28
6016 7663 7.977818 TGCCATACCTCATCTTAGACATATTT 58.022 34.615 0.00 0.00 0.00 1.40
6017 7664 7.879677 TGCCATACCTCATCTTAGACATATTTG 59.120 37.037 0.00 0.00 0.00 2.32
6018 7665 8.097038 GCCATACCTCATCTTAGACATATTTGA 58.903 37.037 0.00 0.00 0.00 2.69
6023 7670 9.775854 ACCTCATCTTAGACATATTTGATCAAG 57.224 33.333 8.41 0.00 0.00 3.02
6024 7671 9.775854 CCTCATCTTAGACATATTTGATCAAGT 57.224 33.333 8.41 8.52 0.00 3.16
6032 7679 8.915057 AGACATATTTGATCAAGTTAGATGGG 57.085 34.615 8.90 0.00 0.00 4.00
6033 7680 8.497745 AGACATATTTGATCAAGTTAGATGGGT 58.502 33.333 8.90 2.70 0.00 4.51
6034 7681 8.455903 ACATATTTGATCAAGTTAGATGGGTG 57.544 34.615 8.90 3.88 0.00 4.61
6035 7682 8.055181 ACATATTTGATCAAGTTAGATGGGTGT 58.945 33.333 8.90 4.40 0.00 4.16
6036 7683 8.906867 CATATTTGATCAAGTTAGATGGGTGTT 58.093 33.333 8.90 0.00 0.00 3.32
6037 7684 7.781324 ATTTGATCAAGTTAGATGGGTGTTT 57.219 32.000 8.41 0.00 0.00 2.83
6038 7685 6.573664 TTGATCAAGTTAGATGGGTGTTTG 57.426 37.500 3.38 0.00 0.00 2.93
6039 7686 5.009631 TGATCAAGTTAGATGGGTGTTTGG 58.990 41.667 0.00 0.00 0.00 3.28
6040 7687 4.447138 TCAAGTTAGATGGGTGTTTGGT 57.553 40.909 0.00 0.00 0.00 3.67
6041 7688 4.798882 TCAAGTTAGATGGGTGTTTGGTT 58.201 39.130 0.00 0.00 0.00 3.67
6042 7689 5.205056 TCAAGTTAGATGGGTGTTTGGTTT 58.795 37.500 0.00 0.00 0.00 3.27
6043 7690 5.659079 TCAAGTTAGATGGGTGTTTGGTTTT 59.341 36.000 0.00 0.00 0.00 2.43
6044 7691 6.834451 TCAAGTTAGATGGGTGTTTGGTTTTA 59.166 34.615 0.00 0.00 0.00 1.52
6045 7692 6.894339 AGTTAGATGGGTGTTTGGTTTTAG 57.106 37.500 0.00 0.00 0.00 1.85
6046 7693 5.243060 AGTTAGATGGGTGTTTGGTTTTAGC 59.757 40.000 0.00 0.00 0.00 3.09
6047 7694 3.844640 AGATGGGTGTTTGGTTTTAGCT 58.155 40.909 0.00 0.00 0.00 3.32
6048 7695 4.993028 AGATGGGTGTTTGGTTTTAGCTA 58.007 39.130 0.00 0.00 0.00 3.32
6049 7696 5.580022 AGATGGGTGTTTGGTTTTAGCTAT 58.420 37.500 0.00 0.00 0.00 2.97
6050 7697 6.727394 AGATGGGTGTTTGGTTTTAGCTATA 58.273 36.000 0.00 0.00 0.00 1.31
6051 7698 6.602009 AGATGGGTGTTTGGTTTTAGCTATAC 59.398 38.462 0.00 0.00 0.00 1.47
6052 7699 5.883180 TGGGTGTTTGGTTTTAGCTATACT 58.117 37.500 0.00 0.00 0.00 2.12
6053 7700 6.308566 TGGGTGTTTGGTTTTAGCTATACTT 58.691 36.000 0.00 0.00 0.00 2.24
6054 7701 7.460071 TGGGTGTTTGGTTTTAGCTATACTTA 58.540 34.615 0.00 0.00 0.00 2.24
6055 7702 7.943447 TGGGTGTTTGGTTTTAGCTATACTTAA 59.057 33.333 0.00 0.00 0.00 1.85
6056 7703 8.456471 GGGTGTTTGGTTTTAGCTATACTTAAG 58.544 37.037 0.00 0.00 0.00 1.85
6057 7704 9.223099 GGTGTTTGGTTTTAGCTATACTTAAGA 57.777 33.333 10.09 0.00 0.00 2.10
6090 7737 6.648879 TTTCATGAAAAGTGAACCCTTAGG 57.351 37.500 18.45 0.00 35.47 2.69
6091 7738 4.079253 TCATGAAAAGTGAACCCTTAGGC 58.921 43.478 0.00 0.00 36.11 3.93
6092 7739 3.586470 TGAAAAGTGAACCCTTAGGCA 57.414 42.857 0.00 0.00 36.11 4.75
6093 7740 3.904717 TGAAAAGTGAACCCTTAGGCAA 58.095 40.909 0.00 0.00 36.11 4.52
6094 7741 4.282496 TGAAAAGTGAACCCTTAGGCAAA 58.718 39.130 0.00 0.00 36.11 3.68
6095 7742 4.098807 TGAAAAGTGAACCCTTAGGCAAAC 59.901 41.667 0.00 0.00 36.11 2.93
6096 7743 2.287977 AGTGAACCCTTAGGCAAACC 57.712 50.000 0.00 0.00 36.11 3.27
6097 7744 1.497286 AGTGAACCCTTAGGCAAACCA 59.503 47.619 0.00 0.00 39.06 3.67
6098 7745 2.091555 AGTGAACCCTTAGGCAAACCAA 60.092 45.455 0.00 0.00 39.06 3.67
6099 7746 2.696187 GTGAACCCTTAGGCAAACCAAA 59.304 45.455 0.00 0.00 39.06 3.28
6100 7747 2.962421 TGAACCCTTAGGCAAACCAAAG 59.038 45.455 0.00 0.00 39.06 2.77
6101 7748 2.767644 ACCCTTAGGCAAACCAAAGT 57.232 45.000 0.00 0.00 39.06 2.66
6102 7749 2.316108 ACCCTTAGGCAAACCAAAGTG 58.684 47.619 0.00 0.00 39.06 3.16
6103 7750 2.316108 CCCTTAGGCAAACCAAAGTGT 58.684 47.619 0.00 0.00 39.06 3.55
6104 7751 2.035832 CCCTTAGGCAAACCAAAGTGTG 59.964 50.000 0.00 0.00 39.06 3.82
6119 7766 3.923017 AGTGTGGCTAACAATTTGAGC 57.077 42.857 2.79 2.51 41.57 4.26
6120 7767 3.221771 AGTGTGGCTAACAATTTGAGCA 58.778 40.909 2.79 0.00 41.57 4.26
6121 7768 3.636300 AGTGTGGCTAACAATTTGAGCAA 59.364 39.130 2.79 0.00 41.57 3.91
6122 7769 3.735746 GTGTGGCTAACAATTTGAGCAAC 59.264 43.478 9.59 9.59 41.57 4.17
6123 7770 3.636300 TGTGGCTAACAATTTGAGCAACT 59.364 39.130 15.05 0.00 40.27 3.16
6124 7771 4.229876 GTGGCTAACAATTTGAGCAACTC 58.770 43.478 2.79 0.00 37.21 3.01
6125 7772 3.888323 TGGCTAACAATTTGAGCAACTCA 59.112 39.130 2.79 0.00 38.87 3.41
6126 7773 4.340666 TGGCTAACAATTTGAGCAACTCAA 59.659 37.500 5.94 5.94 46.93 3.02
6127 7774 9.751134 TGTGGCTAACAATTTGAGCAACTCAAG 62.751 40.741 15.05 2.58 42.48 3.02
6133 7780 0.670162 TTGAGCAACTCAAGCAAGGC 59.330 50.000 5.94 0.00 44.27 4.35
6134 7781 0.466007 TGAGCAACTCAAGCAAGGCA 60.466 50.000 0.00 0.00 37.57 4.75
6135 7782 0.670162 GAGCAACTCAAGCAAGGCAA 59.330 50.000 0.00 0.00 0.00 4.52
6136 7783 1.067516 GAGCAACTCAAGCAAGGCAAA 59.932 47.619 0.00 0.00 0.00 3.68
6137 7784 1.481772 AGCAACTCAAGCAAGGCAAAA 59.518 42.857 0.00 0.00 0.00 2.44
6138 7785 2.093553 AGCAACTCAAGCAAGGCAAAAA 60.094 40.909 0.00 0.00 0.00 1.94
6170 7817 7.320443 TGACAATATGTGGCAAAGATAAGTC 57.680 36.000 9.59 9.59 44.65 3.01
6171 7818 6.883756 TGACAATATGTGGCAAAGATAAGTCA 59.116 34.615 13.37 13.37 44.65 3.41
6172 7819 7.088589 ACAATATGTGGCAAAGATAAGTCAC 57.911 36.000 0.00 0.00 40.61 3.67
6176 7823 5.627499 TGTGGCAAAGATAAGTCACAATC 57.373 39.130 0.00 0.00 46.20 2.67
6177 7824 4.458989 TGTGGCAAAGATAAGTCACAATCC 59.541 41.667 0.00 0.00 46.20 3.01
6178 7825 4.458989 GTGGCAAAGATAAGTCACAATCCA 59.541 41.667 0.00 0.00 39.99 3.41
6179 7826 5.048083 GTGGCAAAGATAAGTCACAATCCAA 60.048 40.000 0.00 0.00 39.99 3.53
6180 7827 5.538053 TGGCAAAGATAAGTCACAATCCAAA 59.462 36.000 0.00 0.00 0.00 3.28
6181 7828 5.863935 GGCAAAGATAAGTCACAATCCAAAC 59.136 40.000 0.00 0.00 0.00 2.93
6182 7829 6.446318 GCAAAGATAAGTCACAATCCAAACA 58.554 36.000 0.00 0.00 0.00 2.83
6183 7830 6.583806 GCAAAGATAAGTCACAATCCAAACAG 59.416 38.462 0.00 0.00 0.00 3.16
6184 7831 5.886960 AGATAAGTCACAATCCAAACAGC 57.113 39.130 0.00 0.00 0.00 4.40
6185 7832 4.702131 AGATAAGTCACAATCCAAACAGCC 59.298 41.667 0.00 0.00 0.00 4.85
6186 7833 2.664402 AGTCACAATCCAAACAGCCT 57.336 45.000 0.00 0.00 0.00 4.58
6187 7834 2.508526 AGTCACAATCCAAACAGCCTC 58.491 47.619 0.00 0.00 0.00 4.70
6188 7835 2.107204 AGTCACAATCCAAACAGCCTCT 59.893 45.455 0.00 0.00 0.00 3.69
6192 7839 4.074970 CACAATCCAAACAGCCTCTTAGT 58.925 43.478 0.00 0.00 0.00 2.24
6213 7860 6.354794 AGTATCACACTGTTAAACTGCCTA 57.645 37.500 0.00 0.00 35.62 3.93
6232 7882 4.731773 GCCTATATGCTGTTCAAGTTGTGC 60.732 45.833 2.11 4.65 0.00 4.57
6255 7905 5.343249 CCTCCACTTTGAAAACAGAACTTG 58.657 41.667 0.00 0.00 0.00 3.16
6256 7906 5.125417 CCTCCACTTTGAAAACAGAACTTGA 59.875 40.000 0.00 0.00 0.00 3.02
6257 7907 6.194796 TCCACTTTGAAAACAGAACTTGAG 57.805 37.500 0.00 0.00 0.00 3.02
6258 7908 4.800471 CCACTTTGAAAACAGAACTTGAGC 59.200 41.667 0.00 0.00 0.00 4.26
6259 7909 4.496895 CACTTTGAAAACAGAACTTGAGCG 59.503 41.667 0.00 0.00 0.00 5.03
6260 7910 4.156008 ACTTTGAAAACAGAACTTGAGCGT 59.844 37.500 0.00 0.00 0.00 5.07
6262 7912 6.038271 ACTTTGAAAACAGAACTTGAGCGTAT 59.962 34.615 0.00 0.00 0.00 3.06
6269 8005 5.598769 ACAGAACTTGAGCGTATATTACCC 58.401 41.667 0.00 0.00 0.00 3.69
6315 8087 6.823689 ACAGGATACCAGATTTGTATCACAAC 59.176 38.462 11.30 0.00 44.08 3.32
6327 8100 2.198827 ATCACAACAAATCGGCTCCA 57.801 45.000 0.00 0.00 0.00 3.86
6332 8105 2.693074 ACAACAAATCGGCTCCAAAACT 59.307 40.909 0.00 0.00 0.00 2.66
6333 8106 3.886505 ACAACAAATCGGCTCCAAAACTA 59.113 39.130 0.00 0.00 0.00 2.24
6334 8107 4.226761 CAACAAATCGGCTCCAAAACTAC 58.773 43.478 0.00 0.00 0.00 2.73
6353 8389 1.154413 CATGCGAACGACAGTTGCC 60.154 57.895 0.00 0.00 41.34 4.52
6383 8419 2.969443 CACACGATGGAGGTTTCAAC 57.031 50.000 0.00 0.00 0.00 3.18
6405 8441 2.421424 GGTGCTATCCACTTTTGCTCAG 59.579 50.000 0.00 0.00 44.08 3.35
6443 8480 1.916000 GTGCTGCATCGCTTCAAAATC 59.084 47.619 5.27 0.00 0.00 2.17
6482 8519 0.739462 TGTAGCAGCGTTCAATCGGG 60.739 55.000 0.00 0.00 0.00 5.14
6490 8527 1.076332 CGTTCAATCGGGTCAACTCC 58.924 55.000 0.00 0.00 0.00 3.85
6497 8534 4.712829 TCAATCGGGTCAACTCCACTATTA 59.287 41.667 0.00 0.00 0.00 0.98
6500 8537 3.317149 TCGGGTCAACTCCACTATTATCG 59.683 47.826 0.00 0.00 0.00 2.92
6576 8648 4.100344 TCTCCTGTATTTAGGCACGCAATA 59.900 41.667 0.00 0.00 37.76 1.90
6589 8661 4.044426 GCACGCAATAGGATTTTGGAATC 58.956 43.478 0.00 0.00 40.78 2.52
6610 8682 7.042658 GGAATCGGCTAGTCAAACTGTATTTAG 60.043 40.741 0.00 0.00 0.00 1.85
6648 8720 5.066593 AGAGAAAAATCTTGATATCGGCCC 58.933 41.667 0.00 0.00 0.00 5.80
6660 8732 3.838271 CGGCCCGAGCTCTGCTTA 61.838 66.667 20.26 0.00 39.88 3.09
6689 8761 1.501292 TGCGATTTGTCATGCACCG 59.499 52.632 0.00 0.00 31.31 4.94
6710 8782 1.860950 CGATATTCTCGCACAACCCTG 59.139 52.381 0.00 0.00 41.14 4.45
6727 8841 0.669619 CTGCATGGAAGTGTGTTGCA 59.330 50.000 0.00 0.00 40.73 4.08
6754 8868 8.648557 AGAAAGTTTTAGCTTGAAATTTGTCC 57.351 30.769 10.56 0.37 0.00 4.02
6796 8910 7.855784 TGAATACCTGAGTCATATACATGGT 57.144 36.000 0.00 0.00 33.66 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.153745 GCAGTGGAGTGACGGCTAG 60.154 63.158 0.00 0.00 34.58 3.42
22 23 2.919856 AGCAGTGGAGTGACGGCT 60.920 61.111 0.00 0.00 41.79 5.52
24 25 2.262915 GGAGCAGTGGAGTGACGG 59.737 66.667 0.00 0.00 0.00 4.79
38 39 4.058817 GGAAGTAACAACAGTGACTGGAG 58.941 47.826 17.92 10.99 35.51 3.86
117 118 1.490490 TCCCAGTGTAGGATGGCAATC 59.510 52.381 0.00 0.00 35.10 2.67
118 119 1.595311 TCCCAGTGTAGGATGGCAAT 58.405 50.000 0.00 0.00 35.10 3.56
123 125 2.755103 GCCTTTTTCCCAGTGTAGGATG 59.245 50.000 0.00 0.00 32.10 3.51
141 143 1.913419 TCCCTCAAAACCTTATCGCCT 59.087 47.619 0.00 0.00 0.00 5.52
157 159 2.129555 AACGTGCCAAGATGCTCCCT 62.130 55.000 0.00 0.00 0.00 4.20
159 161 0.109597 CAAACGTGCCAAGATGCTCC 60.110 55.000 0.00 0.00 0.00 4.70
176 178 0.038526 GACGAAGACGAAGAGGGCAA 60.039 55.000 0.00 0.00 42.66 4.52
199 201 1.153168 GTCATCCATGGGGTCGGTG 60.153 63.158 13.02 2.18 34.93 4.94
221 276 1.078848 CAGCCTTCTTAGCAGCGGT 60.079 57.895 0.00 0.00 0.00 5.68
256 315 1.069049 GGCTAGGATAAAACCGCGGTA 59.931 52.381 34.44 17.84 34.73 4.02
289 348 2.036862 GGGGTGAACAGATCGTATACCC 59.963 54.545 21.03 21.03 46.20 3.69
295 354 2.176247 ATAGGGGGTGAACAGATCGT 57.824 50.000 0.00 0.00 0.00 3.73
296 355 3.560636 AAATAGGGGGTGAACAGATCG 57.439 47.619 0.00 0.00 0.00 3.69
300 359 4.918588 ACAGTTAAATAGGGGGTGAACAG 58.081 43.478 0.00 0.00 0.00 3.16
335 394 9.357652 GAAATATTTACGTGGACAGTAAGTACA 57.642 33.333 0.00 0.00 39.29 2.90
406 465 5.755375 CGAGTTTGCTGGATGTATTACTCAT 59.245 40.000 0.00 0.00 32.40 2.90
409 468 3.871594 GCGAGTTTGCTGGATGTATTACT 59.128 43.478 0.00 0.00 0.00 2.24
435 494 1.301244 CGTGCTTGCACTGTCCTCT 60.301 57.895 21.17 0.00 0.00 3.69
436 495 1.160329 AACGTGCTTGCACTGTCCTC 61.160 55.000 21.17 0.00 0.00 3.71
439 498 0.589729 CACAACGTGCTTGCACTGTC 60.590 55.000 21.17 0.00 32.41 3.51
442 501 1.429021 CACACAACGTGCTTGCACT 59.571 52.632 21.17 7.78 39.19 4.40
444 503 1.308783 TTCCACACAACGTGCTTGCA 61.309 50.000 0.00 0.00 44.91 4.08
445 504 0.179150 TTTCCACACAACGTGCTTGC 60.179 50.000 0.00 0.00 44.91 4.01
446 505 2.184448 CTTTTCCACACAACGTGCTTG 58.816 47.619 0.00 0.00 44.91 4.01
447 506 1.134175 CCTTTTCCACACAACGTGCTT 59.866 47.619 0.00 0.00 44.91 3.91
651 1102 7.404671 AATGAACCGGCCCATTATTATTATC 57.595 36.000 17.25 0.00 31.83 1.75
660 1111 1.381191 GGGAATGAACCGGCCCATT 60.381 57.895 18.37 18.37 40.39 3.16
663 1114 2.754254 GTGGGAATGAACCGGCCC 60.754 66.667 0.00 2.84 41.08 5.80
859 1328 3.149338 CTCTAGCCTGGCGCCTCTG 62.149 68.421 29.70 16.72 38.78 3.35
939 1412 0.693092 TAATTCCGAGGGTGGAGGGG 60.693 60.000 0.00 0.00 39.72 4.79
940 1413 1.435256 ATAATTCCGAGGGTGGAGGG 58.565 55.000 0.00 0.00 39.72 4.30
942 1415 5.291905 AGTTTATAATTCCGAGGGTGGAG 57.708 43.478 0.00 0.00 39.72 3.86
943 1416 4.102054 GGAGTTTATAATTCCGAGGGTGGA 59.898 45.833 1.92 0.00 35.83 4.02
944 1417 4.386711 GGAGTTTATAATTCCGAGGGTGG 58.613 47.826 1.92 0.00 0.00 4.61
967 1594 3.415212 GGGCGGGGTTTTTATATAGACC 58.585 50.000 0.00 0.00 0.00 3.85
986 1613 3.155167 GTGAGGAGGCTACCCGGG 61.155 72.222 22.25 22.25 35.76 5.73
987 1614 3.155167 GGTGAGGAGGCTACCCGG 61.155 72.222 0.00 0.00 35.76 5.73
988 1615 2.363795 TGGTGAGGAGGCTACCCG 60.364 66.667 0.00 0.00 35.76 5.28
990 1617 1.668101 CGACTGGTGAGGAGGCTACC 61.668 65.000 0.00 0.00 35.05 3.18
991 1618 1.810532 CGACTGGTGAGGAGGCTAC 59.189 63.158 0.00 0.00 0.00 3.58
992 1619 2.052690 GCGACTGGTGAGGAGGCTA 61.053 63.158 0.00 0.00 0.00 3.93
993 1620 3.386237 GCGACTGGTGAGGAGGCT 61.386 66.667 0.00 0.00 0.00 4.58
1366 2017 1.100463 ACGTCACCTGTTGCATGCAA 61.100 50.000 28.80 28.80 0.00 4.08
1543 2194 4.783621 GGGAGCGCTGGCATGTGA 62.784 66.667 18.48 0.00 43.41 3.58
1678 2333 1.303309 GCGATGGCTGCTAGTTGATT 58.697 50.000 0.00 0.00 35.83 2.57
1894 2555 0.526662 TCGCGAGGAGGAAGAAGAAC 59.473 55.000 3.71 0.00 0.00 3.01
2302 2982 7.286508 CGCTCAGTTTAATATTGATGCTGTAG 58.713 38.462 0.00 3.87 0.00 2.74
2338 3022 7.739825 TCTATAGTGCTCTTGCCTCATAATTT 58.260 34.615 0.00 0.00 38.71 1.82
2451 3135 5.389859 TGTGATTGGCTTTGGACTAAATG 57.610 39.130 0.00 0.00 0.00 2.32
2562 3249 3.750639 AAAAATATACCGTGCGTGTGG 57.249 42.857 0.00 0.00 0.00 4.17
3149 4328 0.464036 CGTATGCTGGACCAGGCTTA 59.536 55.000 23.09 13.66 31.21 3.09
3190 4373 3.560481 CAGGCGAGACGTCTATCTAGAAA 59.440 47.826 20.09 0.00 40.90 2.52
3256 4443 3.904136 ACTTGCTGCATCTACACAAAC 57.096 42.857 1.84 0.00 0.00 2.93
3355 4604 0.665835 GTGGTGGTTCGTTGCATTCA 59.334 50.000 0.00 0.00 0.00 2.57
3360 4609 1.822186 AGTGGTGGTGGTTCGTTGC 60.822 57.895 0.00 0.00 0.00 4.17
3361 4610 0.746563 ACAGTGGTGGTGGTTCGTTG 60.747 55.000 0.00 0.00 0.00 4.10
3362 4611 0.463116 GACAGTGGTGGTGGTTCGTT 60.463 55.000 0.00 0.00 0.00 3.85
3363 4612 1.145377 GACAGTGGTGGTGGTTCGT 59.855 57.895 0.00 0.00 0.00 3.85
3364 4613 1.597027 GGACAGTGGTGGTGGTTCG 60.597 63.158 0.00 0.00 0.00 3.95
3534 4789 9.113838 CCTACTAAACAAGCACAAGATAATGAT 57.886 33.333 0.00 0.00 0.00 2.45
3748 5010 7.775561 ACATGGTTTTCTCCTTGATAGTTATCC 59.224 37.037 0.00 0.00 36.74 2.59
4030 5302 0.442310 GCGCGACTGAGCACAAAATA 59.558 50.000 12.10 0.00 41.01 1.40
4051 5323 4.944372 GGGCCATACGAGGACGCG 62.944 72.222 3.53 3.53 43.96 6.01
4325 5610 2.033927 TGATGATCTACTGCGACTCAGC 59.966 50.000 0.00 0.00 46.76 4.26
4644 6203 6.594788 AGCCAATCATAAGTTGACAAATGT 57.405 33.333 0.00 0.00 37.11 2.71
4658 6217 6.610075 AACATTTAGTCCAAAGCCAATCAT 57.390 33.333 0.00 0.00 0.00 2.45
4755 6314 4.528920 AGCACTACAAACCCACAAACTTA 58.471 39.130 0.00 0.00 0.00 2.24
4808 6367 5.070770 TGAACACACAAAGCAGACAAATT 57.929 34.783 0.00 0.00 0.00 1.82
4828 6387 3.114606 TGGGGAGTAGCTGAATGAATGA 58.885 45.455 0.00 0.00 0.00 2.57
4829 6388 3.565764 TGGGGAGTAGCTGAATGAATG 57.434 47.619 0.00 0.00 0.00 2.67
4830 6389 4.018050 AGTTTGGGGAGTAGCTGAATGAAT 60.018 41.667 0.00 0.00 0.00 2.57
4897 6456 9.490379 GCAGCATAAGGTAGTAGTAACATTTAT 57.510 33.333 0.00 0.00 0.00 1.40
4898 6457 8.701895 AGCAGCATAAGGTAGTAGTAACATTTA 58.298 33.333 0.00 0.00 0.00 1.40
4966 6525 1.956170 ACGTCACGGAAGCAGCAAG 60.956 57.895 0.35 0.00 0.00 4.01
5257 6871 3.564053 ACGAAGTTGGTTACCTTTGGA 57.436 42.857 2.07 0.00 37.78 3.53
5275 6889 6.754209 AGTAACAATCTAGCTTTGAGATGACG 59.246 38.462 3.66 0.00 33.85 4.35
5296 6919 4.035112 ACATTATGGGACGAAGGGAGTAA 58.965 43.478 0.00 0.00 0.00 2.24
5301 6927 4.377897 GTCTTACATTATGGGACGAAGGG 58.622 47.826 0.00 0.00 0.00 3.95
5307 6933 6.531240 TCGTAAAACGTCTTACATTATGGGAC 59.469 38.462 12.03 1.75 43.14 4.46
5308 6934 6.531240 GTCGTAAAACGTCTTACATTATGGGA 59.469 38.462 12.03 0.00 43.14 4.37
5309 6935 6.310956 TGTCGTAAAACGTCTTACATTATGGG 59.689 38.462 12.03 0.00 43.14 4.00
5310 6936 7.280730 TGTCGTAAAACGTCTTACATTATGG 57.719 36.000 12.03 0.00 43.14 2.74
5313 6939 9.404348 TGTAATGTCGTAAAACGTCTTACATTA 57.596 29.630 12.03 14.92 40.81 1.90
5314 6940 8.216453 GTGTAATGTCGTAAAACGTCTTACATT 58.784 33.333 12.03 16.30 43.16 2.71
5315 6941 7.596248 AGTGTAATGTCGTAAAACGTCTTACAT 59.404 33.333 12.03 0.00 43.14 2.29
5316 6942 6.917477 AGTGTAATGTCGTAAAACGTCTTACA 59.083 34.615 12.03 14.15 43.14 2.41
5317 6943 7.325599 AGTGTAATGTCGTAAAACGTCTTAC 57.674 36.000 1.52 1.52 43.14 2.34
5318 6944 8.503196 TCTAGTGTAATGTCGTAAAACGTCTTA 58.497 33.333 0.00 0.00 43.14 2.10
5319 6945 7.362662 TCTAGTGTAATGTCGTAAAACGTCTT 58.637 34.615 0.00 0.00 43.14 3.01
5320 6946 6.902341 TCTAGTGTAATGTCGTAAAACGTCT 58.098 36.000 0.00 0.00 43.14 4.18
5321 6947 6.798959 ACTCTAGTGTAATGTCGTAAAACGTC 59.201 38.462 0.00 0.00 43.14 4.34
5322 6948 6.672147 ACTCTAGTGTAATGTCGTAAAACGT 58.328 36.000 0.00 0.00 43.14 3.99
5323 6949 6.798476 TGACTCTAGTGTAATGTCGTAAAACG 59.202 38.462 0.00 0.00 44.19 3.60
5324 6950 8.511465 TTGACTCTAGTGTAATGTCGTAAAAC 57.489 34.615 0.00 0.00 0.00 2.43
5325 6951 9.531942 TTTTGACTCTAGTGTAATGTCGTAAAA 57.468 29.630 0.00 0.00 0.00 1.52
5326 6952 9.531942 TTTTTGACTCTAGTGTAATGTCGTAAA 57.468 29.630 0.00 0.00 0.00 2.01
5349 6975 9.760077 CCTACCATAATACTACTCGACATTTTT 57.240 33.333 0.00 0.00 0.00 1.94
5350 6976 9.139734 TCCTACCATAATACTACTCGACATTTT 57.860 33.333 0.00 0.00 0.00 1.82
5351 6977 8.701908 TCCTACCATAATACTACTCGACATTT 57.298 34.615 0.00 0.00 0.00 2.32
5352 6978 8.880991 ATCCTACCATAATACTACTCGACATT 57.119 34.615 0.00 0.00 0.00 2.71
5353 6979 8.880991 AATCCTACCATAATACTACTCGACAT 57.119 34.615 0.00 0.00 0.00 3.06
5354 6980 9.797642 TTAATCCTACCATAATACTACTCGACA 57.202 33.333 0.00 0.00 0.00 4.35
5368 6994 9.225682 TCACTCTTCCTAAATTAATCCTACCAT 57.774 33.333 0.00 0.00 0.00 3.55
5369 6995 8.618240 TCACTCTTCCTAAATTAATCCTACCA 57.382 34.615 0.00 0.00 0.00 3.25
5370 6996 9.901172 TTTCACTCTTCCTAAATTAATCCTACC 57.099 33.333 0.00 0.00 0.00 3.18
5397 7023 2.490991 ACTGCTACTGGTTTTCGTTCC 58.509 47.619 0.00 0.00 0.00 3.62
5451 7080 2.646799 AAAGCTGTGTCGCACGTTGC 62.647 55.000 0.00 8.91 40.69 4.17
5460 7089 5.640732 CCCATACAATTACAAAGCTGTGTC 58.359 41.667 14.28 0.00 36.96 3.67
5473 7102 2.071778 AAGATGGCGCCCATACAATT 57.928 45.000 26.77 6.13 45.26 2.32
5530 7171 2.282026 CACACGTACGTACAGTGCAAAA 59.718 45.455 31.65 0.00 35.60 2.44
5685 7327 1.005630 ACGAGCGCTGCTTCTTCTT 60.006 52.632 18.48 0.00 39.88 2.52
5686 7328 1.445238 GACGAGCGCTGCTTCTTCT 60.445 57.895 18.48 0.00 39.88 2.85
5687 7329 2.448705 GGACGAGCGCTGCTTCTTC 61.449 63.158 18.48 3.05 39.88 2.87
5688 7330 2.433318 GGACGAGCGCTGCTTCTT 60.433 61.111 18.48 0.00 39.88 2.52
5689 7331 3.684990 TGGACGAGCGCTGCTTCT 61.685 61.111 18.48 0.00 39.88 2.85
5690 7332 3.482783 GTGGACGAGCGCTGCTTC 61.483 66.667 18.48 7.92 39.88 3.86
5694 7336 3.470567 GAACGTGGACGAGCGCTG 61.471 66.667 18.48 10.31 43.02 5.18
5953 7600 3.250040 CCAAACAACCTCTAAGTTCACCG 59.750 47.826 0.00 0.00 0.00 4.94
5965 7612 4.475345 TGTGGCTATAAACCAAACAACCT 58.525 39.130 0.00 0.00 39.39 3.50
5966 7613 4.857509 TGTGGCTATAAACCAAACAACC 57.142 40.909 0.00 0.00 39.39 3.77
5967 7614 7.571892 CAAAATGTGGCTATAAACCAAACAAC 58.428 34.615 0.00 0.00 39.39 3.32
5968 7615 6.203723 GCAAAATGTGGCTATAAACCAAACAA 59.796 34.615 0.00 0.00 39.39 2.83
5969 7616 5.698545 GCAAAATGTGGCTATAAACCAAACA 59.301 36.000 0.00 0.00 39.39 2.83
5970 7617 6.164408 GCAAAATGTGGCTATAAACCAAAC 57.836 37.500 0.00 0.00 39.39 2.93
5983 7630 3.956199 AGATGAGGTATGGCAAAATGTGG 59.044 43.478 0.00 0.00 0.00 4.17
5984 7631 5.587388 AAGATGAGGTATGGCAAAATGTG 57.413 39.130 0.00 0.00 0.00 3.21
5985 7632 6.543831 GTCTAAGATGAGGTATGGCAAAATGT 59.456 38.462 0.00 0.00 0.00 2.71
5986 7633 6.543465 TGTCTAAGATGAGGTATGGCAAAATG 59.457 38.462 0.00 0.00 0.00 2.32
5987 7634 6.662755 TGTCTAAGATGAGGTATGGCAAAAT 58.337 36.000 0.00 0.00 0.00 1.82
5988 7635 6.061022 TGTCTAAGATGAGGTATGGCAAAA 57.939 37.500 0.00 0.00 0.00 2.44
5989 7636 5.692115 TGTCTAAGATGAGGTATGGCAAA 57.308 39.130 0.00 0.00 0.00 3.68
5990 7637 5.894298 ATGTCTAAGATGAGGTATGGCAA 57.106 39.130 0.00 0.00 0.00 4.52
5991 7638 7.559335 AATATGTCTAAGATGAGGTATGGCA 57.441 36.000 0.00 0.00 0.00 4.92
5992 7639 8.097038 TCAAATATGTCTAAGATGAGGTATGGC 58.903 37.037 0.00 0.00 0.00 4.40
5997 7644 9.775854 CTTGATCAAATATGTCTAAGATGAGGT 57.224 33.333 9.88 0.00 0.00 3.85
5998 7645 9.775854 ACTTGATCAAATATGTCTAAGATGAGG 57.224 33.333 9.88 0.00 0.00 3.86
6007 7654 8.497745 ACCCATCTAACTTGATCAAATATGTCT 58.502 33.333 9.88 0.00 0.00 3.41
6008 7655 8.562892 CACCCATCTAACTTGATCAAATATGTC 58.437 37.037 9.88 0.00 0.00 3.06
6009 7656 8.055181 ACACCCATCTAACTTGATCAAATATGT 58.945 33.333 9.88 0.74 0.00 2.29
6010 7657 8.455903 ACACCCATCTAACTTGATCAAATATG 57.544 34.615 9.88 8.43 0.00 1.78
6011 7658 9.479549 AAACACCCATCTAACTTGATCAAATAT 57.520 29.630 9.88 1.33 0.00 1.28
6012 7659 8.739039 CAAACACCCATCTAACTTGATCAAATA 58.261 33.333 9.88 5.17 0.00 1.40
6013 7660 7.309990 CCAAACACCCATCTAACTTGATCAAAT 60.310 37.037 9.88 0.00 0.00 2.32
6014 7661 6.015519 CCAAACACCCATCTAACTTGATCAAA 60.016 38.462 9.88 0.00 0.00 2.69
6015 7662 5.476599 CCAAACACCCATCTAACTTGATCAA 59.523 40.000 8.12 8.12 0.00 2.57
6016 7663 5.009631 CCAAACACCCATCTAACTTGATCA 58.990 41.667 0.00 0.00 0.00 2.92
6017 7664 5.010282 ACCAAACACCCATCTAACTTGATC 58.990 41.667 0.00 0.00 0.00 2.92
6018 7665 4.998051 ACCAAACACCCATCTAACTTGAT 58.002 39.130 0.00 0.00 0.00 2.57
6019 7666 4.447138 ACCAAACACCCATCTAACTTGA 57.553 40.909 0.00 0.00 0.00 3.02
6020 7667 5.529581 AAACCAAACACCCATCTAACTTG 57.470 39.130 0.00 0.00 0.00 3.16
6021 7668 6.239204 GCTAAAACCAAACACCCATCTAACTT 60.239 38.462 0.00 0.00 0.00 2.66
6022 7669 5.243060 GCTAAAACCAAACACCCATCTAACT 59.757 40.000 0.00 0.00 0.00 2.24
6023 7670 5.243060 AGCTAAAACCAAACACCCATCTAAC 59.757 40.000 0.00 0.00 0.00 2.34
6024 7671 5.390387 AGCTAAAACCAAACACCCATCTAA 58.610 37.500 0.00 0.00 0.00 2.10
6025 7672 4.993028 AGCTAAAACCAAACACCCATCTA 58.007 39.130 0.00 0.00 0.00 1.98
6026 7673 3.844640 AGCTAAAACCAAACACCCATCT 58.155 40.909 0.00 0.00 0.00 2.90
6027 7674 5.914898 ATAGCTAAAACCAAACACCCATC 57.085 39.130 0.00 0.00 0.00 3.51
6028 7675 6.490492 AGTATAGCTAAAACCAAACACCCAT 58.510 36.000 0.00 0.00 0.00 4.00
6029 7676 5.883180 AGTATAGCTAAAACCAAACACCCA 58.117 37.500 0.00 0.00 0.00 4.51
6030 7677 6.829229 AAGTATAGCTAAAACCAAACACCC 57.171 37.500 0.00 0.00 0.00 4.61
6031 7678 9.223099 TCTTAAGTATAGCTAAAACCAAACACC 57.777 33.333 0.00 0.00 0.00 4.16
6065 7712 7.496747 CCTAAGGGTTCACTTTTCATGAAAAA 58.503 34.615 28.49 15.38 39.49 1.94
6066 7713 6.462347 GCCTAAGGGTTCACTTTTCATGAAAA 60.462 38.462 27.39 27.39 37.80 2.29
6067 7714 5.010617 GCCTAAGGGTTCACTTTTCATGAAA 59.989 40.000 16.91 16.91 37.80 2.69
6068 7715 4.522789 GCCTAAGGGTTCACTTTTCATGAA 59.477 41.667 3.38 3.38 33.68 2.57
6069 7716 4.079253 GCCTAAGGGTTCACTTTTCATGA 58.921 43.478 0.00 0.00 34.45 3.07
6070 7717 3.826157 TGCCTAAGGGTTCACTTTTCATG 59.174 43.478 0.00 0.00 34.45 3.07
6071 7718 4.112634 TGCCTAAGGGTTCACTTTTCAT 57.887 40.909 0.00 0.00 34.45 2.57
6072 7719 3.586470 TGCCTAAGGGTTCACTTTTCA 57.414 42.857 0.00 0.00 34.45 2.69
6073 7720 4.500887 GGTTTGCCTAAGGGTTCACTTTTC 60.501 45.833 0.00 0.00 34.45 2.29
6074 7721 3.386726 GGTTTGCCTAAGGGTTCACTTTT 59.613 43.478 0.00 0.00 34.45 2.27
6075 7722 2.963101 GGTTTGCCTAAGGGTTCACTTT 59.037 45.455 0.00 0.00 34.45 2.66
6076 7723 2.091555 TGGTTTGCCTAAGGGTTCACTT 60.092 45.455 0.00 0.00 35.27 3.16
6077 7724 1.497286 TGGTTTGCCTAAGGGTTCACT 59.503 47.619 0.00 0.00 35.27 3.41
6078 7725 1.989706 TGGTTTGCCTAAGGGTTCAC 58.010 50.000 0.00 0.00 35.27 3.18
6079 7726 2.757894 TTGGTTTGCCTAAGGGTTCA 57.242 45.000 0.00 0.00 35.27 3.18
6080 7727 2.963101 ACTTTGGTTTGCCTAAGGGTTC 59.037 45.455 11.26 0.00 46.94 3.62
6081 7728 2.698274 CACTTTGGTTTGCCTAAGGGTT 59.302 45.455 11.26 0.00 46.94 4.11
6082 7729 2.316108 CACTTTGGTTTGCCTAAGGGT 58.684 47.619 11.26 0.00 46.94 4.34
6084 7731 2.035832 CCACACTTTGGTTTGCCTAAGG 59.964 50.000 11.26 4.61 46.94 2.69
6097 7744 4.099266 TGCTCAAATTGTTAGCCACACTTT 59.901 37.500 4.54 0.00 38.47 2.66
6098 7745 3.636300 TGCTCAAATTGTTAGCCACACTT 59.364 39.130 4.54 0.00 33.98 3.16
6099 7746 3.221771 TGCTCAAATTGTTAGCCACACT 58.778 40.909 4.54 0.00 33.98 3.55
6100 7747 3.641437 TGCTCAAATTGTTAGCCACAC 57.359 42.857 4.54 0.00 33.98 3.82
6101 7748 3.636300 AGTTGCTCAAATTGTTAGCCACA 59.364 39.130 11.51 0.00 35.09 4.17
6102 7749 4.229876 GAGTTGCTCAAATTGTTAGCCAC 58.770 43.478 4.54 4.08 35.33 5.01
6103 7750 3.888323 TGAGTTGCTCAAATTGTTAGCCA 59.112 39.130 4.54 0.00 37.57 4.75
6104 7751 4.503741 TGAGTTGCTCAAATTGTTAGCC 57.496 40.909 4.54 0.00 37.57 3.93
6114 7761 0.670162 GCCTTGCTTGAGTTGCTCAA 59.330 50.000 10.61 10.61 46.50 3.02
6115 7762 0.466007 TGCCTTGCTTGAGTTGCTCA 60.466 50.000 0.00 0.00 38.87 4.26
6116 7763 0.670162 TTGCCTTGCTTGAGTTGCTC 59.330 50.000 0.00 0.00 0.00 4.26
6117 7764 1.113788 TTTGCCTTGCTTGAGTTGCT 58.886 45.000 0.00 0.00 0.00 3.91
6118 7765 1.938625 TTTTGCCTTGCTTGAGTTGC 58.061 45.000 0.00 0.00 0.00 4.17
6135 7782 9.499479 TTGCCACATATTGTCACATTAATTTTT 57.501 25.926 0.00 0.00 0.00 1.94
6136 7783 9.499479 TTTGCCACATATTGTCACATTAATTTT 57.501 25.926 0.00 0.00 0.00 1.82
6137 7784 9.153721 CTTTGCCACATATTGTCACATTAATTT 57.846 29.630 0.00 0.00 0.00 1.82
6138 7785 8.530311 TCTTTGCCACATATTGTCACATTAATT 58.470 29.630 0.00 0.00 0.00 1.40
6139 7786 8.065473 TCTTTGCCACATATTGTCACATTAAT 57.935 30.769 0.00 0.00 0.00 1.40
6140 7787 7.459795 TCTTTGCCACATATTGTCACATTAA 57.540 32.000 0.00 0.00 0.00 1.40
6141 7788 7.643569 ATCTTTGCCACATATTGTCACATTA 57.356 32.000 0.00 0.00 0.00 1.90
6142 7789 5.981088 TCTTTGCCACATATTGTCACATT 57.019 34.783 0.00 0.00 0.00 2.71
6143 7790 7.340232 ACTTATCTTTGCCACATATTGTCACAT 59.660 33.333 0.00 0.00 0.00 3.21
6144 7791 6.658816 ACTTATCTTTGCCACATATTGTCACA 59.341 34.615 0.00 0.00 0.00 3.58
6145 7792 7.088589 ACTTATCTTTGCCACATATTGTCAC 57.911 36.000 0.00 0.00 0.00 3.67
6146 7793 6.883756 TGACTTATCTTTGCCACATATTGTCA 59.116 34.615 0.00 0.00 0.00 3.58
6147 7794 7.148255 TGTGACTTATCTTTGCCACATATTGTC 60.148 37.037 0.00 0.00 30.67 3.18
6148 7795 6.658816 TGTGACTTATCTTTGCCACATATTGT 59.341 34.615 0.00 0.00 30.67 2.71
6149 7796 7.087409 TGTGACTTATCTTTGCCACATATTG 57.913 36.000 0.00 0.00 30.67 1.90
6150 7797 7.701539 TTGTGACTTATCTTTGCCACATATT 57.298 32.000 0.00 0.00 34.95 1.28
6151 7798 7.013655 GGATTGTGACTTATCTTTGCCACATAT 59.986 37.037 0.00 0.00 34.95 1.78
6152 7799 6.318648 GGATTGTGACTTATCTTTGCCACATA 59.681 38.462 0.00 0.00 34.95 2.29
6153 7800 5.126061 GGATTGTGACTTATCTTTGCCACAT 59.874 40.000 0.00 0.00 34.95 3.21
6154 7801 4.458989 GGATTGTGACTTATCTTTGCCACA 59.541 41.667 0.00 0.00 33.38 4.17
6155 7802 4.458989 TGGATTGTGACTTATCTTTGCCAC 59.541 41.667 0.00 0.00 0.00 5.01
6156 7803 4.661222 TGGATTGTGACTTATCTTTGCCA 58.339 39.130 0.00 0.00 0.00 4.92
6157 7804 5.643379 TTGGATTGTGACTTATCTTTGCC 57.357 39.130 0.00 0.00 0.00 4.52
6158 7805 6.446318 TGTTTGGATTGTGACTTATCTTTGC 58.554 36.000 0.00 0.00 0.00 3.68
6159 7806 6.583806 GCTGTTTGGATTGTGACTTATCTTTG 59.416 38.462 0.00 0.00 0.00 2.77
6160 7807 6.294731 GGCTGTTTGGATTGTGACTTATCTTT 60.295 38.462 0.00 0.00 0.00 2.52
6161 7808 5.183904 GGCTGTTTGGATTGTGACTTATCTT 59.816 40.000 0.00 0.00 0.00 2.40
6162 7809 4.702131 GGCTGTTTGGATTGTGACTTATCT 59.298 41.667 0.00 0.00 0.00 1.98
6163 7810 4.702131 AGGCTGTTTGGATTGTGACTTATC 59.298 41.667 0.00 0.00 0.00 1.75
6164 7811 4.666512 AGGCTGTTTGGATTGTGACTTAT 58.333 39.130 0.00 0.00 0.00 1.73
6165 7812 4.072131 GAGGCTGTTTGGATTGTGACTTA 58.928 43.478 0.00 0.00 0.00 2.24
6166 7813 2.887152 GAGGCTGTTTGGATTGTGACTT 59.113 45.455 0.00 0.00 0.00 3.01
6167 7814 2.107204 AGAGGCTGTTTGGATTGTGACT 59.893 45.455 0.00 0.00 0.00 3.41
6168 7815 2.508526 AGAGGCTGTTTGGATTGTGAC 58.491 47.619 0.00 0.00 0.00 3.67
6169 7816 2.957402 AGAGGCTGTTTGGATTGTGA 57.043 45.000 0.00 0.00 0.00 3.58
6170 7817 4.074970 ACTAAGAGGCTGTTTGGATTGTG 58.925 43.478 0.90 0.00 0.00 3.33
6171 7818 4.373156 ACTAAGAGGCTGTTTGGATTGT 57.627 40.909 0.90 0.00 0.00 2.71
6172 7819 6.037610 GTGATACTAAGAGGCTGTTTGGATTG 59.962 42.308 0.90 0.00 0.00 2.67
6173 7820 6.116126 GTGATACTAAGAGGCTGTTTGGATT 58.884 40.000 0.90 0.00 0.00 3.01
6174 7821 5.189736 TGTGATACTAAGAGGCTGTTTGGAT 59.810 40.000 0.90 2.24 0.00 3.41
6175 7822 4.530553 TGTGATACTAAGAGGCTGTTTGGA 59.469 41.667 0.90 0.00 0.00 3.53
6176 7823 4.631813 GTGTGATACTAAGAGGCTGTTTGG 59.368 45.833 0.90 0.00 0.00 3.28
6177 7824 5.349817 CAGTGTGATACTAAGAGGCTGTTTG 59.650 44.000 0.90 2.91 37.60 2.93
6178 7825 5.012148 ACAGTGTGATACTAAGAGGCTGTTT 59.988 40.000 0.90 0.00 37.60 2.83
6179 7826 4.528596 ACAGTGTGATACTAAGAGGCTGTT 59.471 41.667 1.39 1.39 37.60 3.16
6180 7827 4.090090 ACAGTGTGATACTAAGAGGCTGT 58.910 43.478 0.00 0.00 37.60 4.40
6181 7828 4.727507 ACAGTGTGATACTAAGAGGCTG 57.272 45.455 0.00 0.00 37.60 4.85
6182 7829 6.852420 TTAACAGTGTGATACTAAGAGGCT 57.148 37.500 0.00 0.00 37.60 4.58
6183 7830 7.063544 CAGTTTAACAGTGTGATACTAAGAGGC 59.936 40.741 3.62 0.00 37.60 4.70
6184 7831 7.063544 GCAGTTTAACAGTGTGATACTAAGAGG 59.936 40.741 3.62 0.00 37.60 3.69
6185 7832 7.063544 GGCAGTTTAACAGTGTGATACTAAGAG 59.936 40.741 3.62 0.00 37.60 2.85
6186 7833 6.872020 GGCAGTTTAACAGTGTGATACTAAGA 59.128 38.462 3.62 0.00 37.60 2.10
6187 7834 6.874134 AGGCAGTTTAACAGTGTGATACTAAG 59.126 38.462 3.62 0.00 37.60 2.18
6188 7835 6.765403 AGGCAGTTTAACAGTGTGATACTAA 58.235 36.000 3.62 0.00 37.60 2.24
6192 7839 7.441157 GCATATAGGCAGTTTAACAGTGTGATA 59.559 37.037 4.13 0.00 0.00 2.15
6213 7860 3.424703 AGGCACAACTTGAACAGCATAT 58.575 40.909 0.00 0.00 0.00 1.78
6232 7882 5.125417 TCAAGTTCTGTTTTCAAAGTGGAGG 59.875 40.000 0.00 0.00 0.00 4.30
6258 7908 2.847901 CGTGAGAGCGGGTAATATACG 58.152 52.381 0.00 0.00 0.00 3.06
6259 7909 2.593257 GCGTGAGAGCGGGTAATATAC 58.407 52.381 0.00 0.00 0.00 1.47
6315 8087 2.817258 TGGTAGTTTTGGAGCCGATTTG 59.183 45.455 0.00 0.00 0.00 2.32
6327 8100 2.478894 CTGTCGTTCGCATGGTAGTTTT 59.521 45.455 0.00 0.00 0.00 2.43
6332 8105 1.424403 CAACTGTCGTTCGCATGGTA 58.576 50.000 0.00 0.00 0.00 3.25
6333 8106 1.841663 GCAACTGTCGTTCGCATGGT 61.842 55.000 0.00 0.00 0.00 3.55
6334 8107 1.154413 GCAACTGTCGTTCGCATGG 60.154 57.895 0.00 0.00 0.00 3.66
6353 8389 3.605749 ATCGTGTGGAGTTGGGCCG 62.606 63.158 0.00 0.00 0.00 6.13
6383 8419 1.398390 GAGCAAAAGTGGATAGCACCG 59.602 52.381 0.00 0.00 0.00 4.94
6405 8441 0.523072 ACATCAAGCCGTTCATGTGC 59.477 50.000 0.00 0.00 0.00 4.57
6443 8480 0.934901 CACACGACACAGTCTGGACG 60.935 60.000 4.53 9.06 36.20 4.79
6482 8519 7.426410 TCTCATTCGATAATAGTGGAGTTGAC 58.574 38.462 0.00 0.00 0.00 3.18
6548 8620 5.739358 GCGTGCCTAAATACAGGAGAATAGT 60.739 44.000 0.00 0.00 38.00 2.12
6555 8627 2.772077 TTGCGTGCCTAAATACAGGA 57.228 45.000 0.00 0.00 38.00 3.86
6576 8648 3.199946 TGACTAGCCGATTCCAAAATCCT 59.800 43.478 0.00 0.00 38.46 3.24
6589 8661 4.270325 GCCTAAATACAGTTTGACTAGCCG 59.730 45.833 0.00 0.00 0.00 5.52
6634 8706 0.827925 AGCTCGGGCCGATATCAAGA 60.828 55.000 31.23 3.96 39.73 3.02
6648 8720 1.216444 TGCAGGTAAGCAGAGCTCG 59.784 57.895 8.37 4.60 38.25 5.03
6660 8732 0.311790 CAAATCGCACAACTGCAGGT 59.688 50.000 19.93 9.19 44.50 4.00
6674 8746 0.378257 ATCGCGGTGCATGACAAATC 59.622 50.000 6.13 0.00 0.00 2.17
6710 8782 0.953727 TCTGCAACACACTTCCATGC 59.046 50.000 0.00 0.00 37.52 4.06
6727 8841 9.521503 GACAAATTTCAAGCTAAAACTTTCTCT 57.478 29.630 0.00 0.00 0.00 3.10
6754 8868 7.551974 AGGTATTCATCTCTTGATTTGTCTGTG 59.448 37.037 0.00 0.00 33.34 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.