Multiple sequence alignment - TraesCS4B01G197200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G197200 chr4B 100.000 4142 0 0 1 4142 424747421 424751562 0.000000e+00 7649.0
1 TraesCS4B01G197200 chr4B 93.478 46 2 1 97 141 562579757 562579802 2.670000e-07 67.6
2 TraesCS4B01G197200 chr4D 93.039 2284 88 21 1153 3416 342790022 342792254 0.000000e+00 3271.0
3 TraesCS4B01G197200 chr4D 95.208 626 22 5 419 1040 342789393 342790014 0.000000e+00 983.0
4 TraesCS4B01G197200 chr4D 91.325 634 32 18 3431 4048 342792243 342792869 0.000000e+00 845.0
5 TraesCS4B01G197200 chr4D 91.358 243 16 3 141 378 342788983 342789225 1.110000e-85 327.0
6 TraesCS4B01G197200 chr4A 89.971 2403 174 46 1727 4086 123075915 123073537 0.000000e+00 3040.0
7 TraesCS4B01G197200 chr4A 91.957 920 47 11 141 1041 123077418 123076507 0.000000e+00 1264.0
8 TraesCS4B01G197200 chr4A 92.562 484 35 1 1145 1627 123076508 123076025 0.000000e+00 693.0
9 TraesCS4B01G197200 chr4A 88.235 136 14 2 2264 2398 655650225 655650359 1.190000e-35 161.0
10 TraesCS4B01G197200 chr7D 97.391 115 3 0 1033 1147 126669811 126669697 3.270000e-46 196.0
11 TraesCS4B01G197200 chr7D 89.437 142 12 2 2258 2397 612141515 612141375 4.260000e-40 176.0
12 TraesCS4B01G197200 chr6D 95.161 124 5 1 1029 1151 81674755 81674632 1.170000e-45 195.0
13 TraesCS4B01G197200 chr5B 98.198 111 2 0 1040 1150 697185041 697184931 1.170000e-45 195.0
14 TraesCS4B01G197200 chr5A 96.610 118 3 1 1037 1154 522062288 522062404 1.170000e-45 195.0
15 TraesCS4B01G197200 chr5A 96.522 115 4 0 1035 1149 632877217 632877103 1.520000e-44 191.0
16 TraesCS4B01G197200 chr5A 88.971 136 13 2 2263 2397 57457629 57457763 2.560000e-37 167.0
17 TraesCS4B01G197200 chr2B 95.833 120 4 1 1040 1158 25365985 25366104 4.230000e-45 193.0
18 TraesCS4B01G197200 chr7B 95.798 119 4 1 1029 1147 274319052 274319169 1.520000e-44 191.0
19 TraesCS4B01G197200 chr3A 95.000 120 6 0 1040 1159 707385967 707385848 5.470000e-44 189.0
20 TraesCS4B01G197200 chrUn 92.366 131 8 2 1032 1161 301836915 301837044 7.070000e-43 185.0
21 TraesCS4B01G197200 chr2A 94.958 119 4 2 1034 1151 635580064 635579947 7.070000e-43 185.0
22 TraesCS4B01G197200 chr2A 95.652 115 4 1 1032 1146 762743636 762743749 2.540000e-42 183.0
23 TraesCS4B01G197200 chr2A 91.473 129 9 2 1020 1148 748822481 748822355 4.260000e-40 176.0
24 TraesCS4B01G197200 chr2A 92.754 69 5 0 13 81 173026378 173026446 2.630000e-17 100.0
25 TraesCS4B01G197200 chr2A 95.745 47 1 1 97 142 612081778 612081824 1.600000e-09 75.0
26 TraesCS4B01G197200 chr2A 94.872 39 1 1 105 142 769637575 769637537 4.470000e-05 60.2
27 TraesCS4B01G197200 chr3B 92.857 126 8 1 1022 1146 512871639 512871764 9.150000e-42 182.0
28 TraesCS4B01G197200 chr3B 86.429 140 18 1 2258 2397 408483237 408483375 7.170000e-33 152.0
29 TraesCS4B01G197200 chr3B 94.737 38 1 1 105 141 815474167 815474204 1.610000e-04 58.4
30 TraesCS4B01G197200 chr1A 90.370 135 11 2 2264 2397 92563421 92563554 4.260000e-40 176.0
31 TraesCS4B01G197200 chr1B 86.765 136 16 2 2264 2398 64515505 64515639 2.580000e-32 150.0
32 TraesCS4B01G197200 chr1B 86.765 136 16 2 2264 2398 292670685 292670551 2.580000e-32 150.0
33 TraesCS4B01G197200 chr1B 97.778 45 1 0 97 141 57026014 57026058 1.230000e-10 78.7
34 TraesCS4B01G197200 chr1B 97.778 45 1 0 97 141 57040831 57040875 1.230000e-10 78.7
35 TraesCS4B01G197200 chr1B 97.778 45 1 0 97 141 57066038 57066082 1.230000e-10 78.7
36 TraesCS4B01G197200 chr3D 93.617 47 2 1 97 142 462453537 462453583 7.430000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G197200 chr4B 424747421 424751562 4141 False 7649.000000 7649 100.000000 1 4142 1 chr4B.!!$F1 4141
1 TraesCS4B01G197200 chr4D 342788983 342792869 3886 False 1356.500000 3271 92.732500 141 4048 4 chr4D.!!$F1 3907
2 TraesCS4B01G197200 chr4A 123073537 123077418 3881 True 1665.666667 3040 91.496667 141 4086 3 chr4A.!!$R1 3945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.321564 CTGAACCATTGGAGCCACGA 60.322 55.0 10.37 0.00 0.00 4.35 F
1055 1197 0.549950 AGATACTCCCTCCGTTCGGA 59.450 55.0 13.34 13.34 0.00 4.55 F
1934 2123 0.737367 TTGCATCCGCGAGTTCTCTG 60.737 55.0 8.23 0.00 42.97 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2188 2381 0.321564 TTGGGAGTGCTGGATGAACG 60.322 55.0 0.0 0.0 0.00 3.95 R
2794 3009 1.163420 ATTGACGCACGTTCTGCCAA 61.163 50.0 0.0 0.0 43.84 4.52 R
3523 3749 0.667487 CTGCAAAGAGAGCGGACGAA 60.667 55.0 0.0 0.0 40.83 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.919385 ATTGAAAATATTACCTGAAGGGCAT 57.081 32.000 0.56 0.00 40.27 4.40
25 26 7.732222 TTGAAAATATTACCTGAAGGGCATT 57.268 32.000 0.56 0.00 40.27 3.56
26 27 8.830915 TTGAAAATATTACCTGAAGGGCATTA 57.169 30.769 0.56 0.00 40.27 1.90
27 28 8.463930 TGAAAATATTACCTGAAGGGCATTAG 57.536 34.615 0.56 0.00 40.27 1.73
28 29 8.278639 TGAAAATATTACCTGAAGGGCATTAGA 58.721 33.333 0.56 0.00 40.27 2.10
29 30 9.131791 GAAAATATTACCTGAAGGGCATTAGAA 57.868 33.333 0.56 0.00 40.27 2.10
30 31 8.465273 AAATATTACCTGAAGGGCATTAGAAC 57.535 34.615 0.56 0.00 40.27 3.01
31 32 5.717119 ATTACCTGAAGGGCATTAGAACT 57.283 39.130 0.56 0.00 40.27 3.01
32 33 5.514500 TTACCTGAAGGGCATTAGAACTT 57.486 39.130 0.56 0.00 40.27 2.66
33 34 6.630203 TTACCTGAAGGGCATTAGAACTTA 57.370 37.500 0.56 0.00 40.27 2.24
34 35 5.514500 ACCTGAAGGGCATTAGAACTTAA 57.486 39.130 0.56 0.00 40.27 1.85
35 36 5.887754 ACCTGAAGGGCATTAGAACTTAAA 58.112 37.500 0.56 0.00 40.27 1.52
36 37 5.946377 ACCTGAAGGGCATTAGAACTTAAAG 59.054 40.000 0.56 0.00 40.27 1.85
37 38 5.358160 CCTGAAGGGCATTAGAACTTAAAGG 59.642 44.000 0.00 0.00 0.00 3.11
38 39 5.887754 TGAAGGGCATTAGAACTTAAAGGT 58.112 37.500 0.00 0.00 0.00 3.50
39 40 5.710099 TGAAGGGCATTAGAACTTAAAGGTG 59.290 40.000 0.00 0.00 0.00 4.00
40 41 5.256806 AGGGCATTAGAACTTAAAGGTGT 57.743 39.130 0.00 0.00 0.00 4.16
41 42 6.382919 AGGGCATTAGAACTTAAAGGTGTA 57.617 37.500 0.00 0.00 0.00 2.90
42 43 6.970191 AGGGCATTAGAACTTAAAGGTGTAT 58.030 36.000 0.00 0.00 0.00 2.29
43 44 6.828785 AGGGCATTAGAACTTAAAGGTGTATG 59.171 38.462 0.00 0.00 0.00 2.39
44 45 6.602009 GGGCATTAGAACTTAAAGGTGTATGT 59.398 38.462 0.00 0.00 0.00 2.29
45 46 7.122204 GGGCATTAGAACTTAAAGGTGTATGTT 59.878 37.037 0.00 0.00 0.00 2.71
46 47 8.182227 GGCATTAGAACTTAAAGGTGTATGTTC 58.818 37.037 0.00 0.00 37.94 3.18
47 48 7.903431 GCATTAGAACTTAAAGGTGTATGTTCG 59.097 37.037 0.00 0.00 40.47 3.95
48 49 7.894376 TTAGAACTTAAAGGTGTATGTTCGG 57.106 36.000 0.00 0.00 40.47 4.30
49 50 4.694037 AGAACTTAAAGGTGTATGTTCGGC 59.306 41.667 0.00 0.00 40.47 5.54
50 51 4.010667 ACTTAAAGGTGTATGTTCGGCA 57.989 40.909 0.00 0.00 0.00 5.69
51 52 4.585879 ACTTAAAGGTGTATGTTCGGCAT 58.414 39.130 0.00 0.00 41.42 4.40
52 53 4.394920 ACTTAAAGGTGTATGTTCGGCATG 59.605 41.667 4.12 0.00 38.47 4.06
53 54 2.779755 AAGGTGTATGTTCGGCATGA 57.220 45.000 0.00 0.00 38.47 3.07
54 55 2.779755 AGGTGTATGTTCGGCATGAA 57.220 45.000 0.00 0.00 38.47 2.57
55 56 3.281727 AGGTGTATGTTCGGCATGAAT 57.718 42.857 0.00 0.00 39.21 2.57
56 57 4.415881 AGGTGTATGTTCGGCATGAATA 57.584 40.909 0.00 0.00 39.21 1.75
57 58 4.380531 AGGTGTATGTTCGGCATGAATAG 58.619 43.478 0.00 0.00 39.21 1.73
58 59 4.127171 GGTGTATGTTCGGCATGAATAGT 58.873 43.478 0.00 0.00 39.21 2.12
59 60 5.069914 AGGTGTATGTTCGGCATGAATAGTA 59.930 40.000 0.00 0.00 39.21 1.82
60 61 5.756347 GGTGTATGTTCGGCATGAATAGTAA 59.244 40.000 0.00 0.00 39.21 2.24
61 62 6.426937 GGTGTATGTTCGGCATGAATAGTAAT 59.573 38.462 0.00 0.00 39.21 1.89
62 63 7.601130 GGTGTATGTTCGGCATGAATAGTAATA 59.399 37.037 0.00 0.00 39.21 0.98
63 64 8.984764 GTGTATGTTCGGCATGAATAGTAATAA 58.015 33.333 0.00 0.00 39.21 1.40
64 65 9.203421 TGTATGTTCGGCATGAATAGTAATAAG 57.797 33.333 0.00 0.00 39.21 1.73
65 66 6.539649 TGTTCGGCATGAATAGTAATAAGC 57.460 37.500 0.00 0.00 39.21 3.09
66 67 6.052360 TGTTCGGCATGAATAGTAATAAGCA 58.948 36.000 0.00 0.00 39.21 3.91
67 68 6.540551 TGTTCGGCATGAATAGTAATAAGCAA 59.459 34.615 0.00 0.00 39.21 3.91
68 69 6.539649 TCGGCATGAATAGTAATAAGCAAC 57.460 37.500 0.00 0.00 0.00 4.17
69 70 6.288294 TCGGCATGAATAGTAATAAGCAACT 58.712 36.000 0.00 0.00 0.00 3.16
70 71 7.438564 TCGGCATGAATAGTAATAAGCAACTA 58.561 34.615 0.00 0.00 32.98 2.24
71 72 7.598869 TCGGCATGAATAGTAATAAGCAACTAG 59.401 37.037 0.00 0.00 32.01 2.57
72 73 7.598869 CGGCATGAATAGTAATAAGCAACTAGA 59.401 37.037 0.00 0.00 32.01 2.43
73 74 9.273016 GGCATGAATAGTAATAAGCAACTAGAA 57.727 33.333 0.00 0.00 32.01 2.10
88 89 8.023050 AGCAACTAGAATATATGTTCATTCGC 57.977 34.615 13.88 9.35 36.48 4.70
89 90 7.657354 AGCAACTAGAATATATGTTCATTCGCA 59.343 33.333 13.88 0.00 36.48 5.10
90 91 8.282592 GCAACTAGAATATATGTTCATTCGCAA 58.717 33.333 13.88 0.00 36.48 4.85
117 118 6.861065 AAAACTAGAATATATGTGCCCGTG 57.139 37.500 0.00 0.00 0.00 4.94
118 119 3.926616 ACTAGAATATATGTGCCCGTGC 58.073 45.455 0.00 0.00 38.26 5.34
133 134 4.036804 TGCAACGCACGGGCATTC 62.037 61.111 11.77 0.00 41.24 2.67
134 135 4.036804 GCAACGCACGGGCATTCA 62.037 61.111 11.77 0.00 41.24 2.57
135 136 2.126888 CAACGCACGGGCATTCAC 60.127 61.111 11.77 0.00 41.24 3.18
136 137 3.361977 AACGCACGGGCATTCACC 61.362 61.111 11.77 0.00 41.24 4.02
137 138 3.842925 AACGCACGGGCATTCACCT 62.843 57.895 11.77 0.00 41.24 4.00
138 139 2.125310 CGCACGGGCATTCACCTA 60.125 61.111 11.77 0.00 41.24 3.08
139 140 2.173669 CGCACGGGCATTCACCTAG 61.174 63.158 11.77 0.00 41.24 3.02
156 157 7.672983 TCACCTAGTCTTTAGAAAATTGCAG 57.327 36.000 0.00 0.00 0.00 4.41
205 206 1.662629 CATCTTGTCTGGATGCGTCAC 59.337 52.381 8.47 0.00 34.97 3.67
275 276 0.321564 CTGAACCATTGGAGCCACGA 60.322 55.000 10.37 0.00 0.00 4.35
291 292 2.264794 GACCACGACGATGGCCTT 59.735 61.111 3.32 0.00 44.33 4.35
294 295 2.741985 CACGACGATGGCCTTGCA 60.742 61.111 3.32 0.00 0.00 4.08
316 317 0.958091 CAAAGGCAATCGGGACAACA 59.042 50.000 0.00 0.00 0.00 3.33
317 318 1.545582 CAAAGGCAATCGGGACAACAT 59.454 47.619 0.00 0.00 0.00 2.71
318 319 1.176527 AAGGCAATCGGGACAACATG 58.823 50.000 0.00 0.00 0.00 3.21
319 320 1.139520 GGCAATCGGGACAACATGC 59.860 57.895 0.00 0.00 0.00 4.06
320 321 1.594194 GGCAATCGGGACAACATGCA 61.594 55.000 0.00 0.00 35.57 3.96
381 409 2.488204 TCAATGAGGTGATTGCGGAA 57.512 45.000 0.00 0.00 33.95 4.30
388 416 1.003580 AGGTGATTGCGGAATGTGTCT 59.996 47.619 6.97 0.00 0.00 3.41
666 807 2.078392 CGTGCGTAAATTACCCACCTT 58.922 47.619 13.39 0.00 34.77 3.50
703 844 2.284625 ATGGAGACCTGCCCGTGA 60.285 61.111 0.00 0.00 0.00 4.35
813 954 6.369005 CCATTATCAGATTTCGCATCTGTTC 58.631 40.000 18.59 0.00 44.30 3.18
815 956 2.270923 TCAGATTTCGCATCTGTTCGG 58.729 47.619 18.59 0.46 44.30 4.30
843 984 9.099454 GTCATAAGTGGAAGAAGTATAAACAGG 57.901 37.037 0.00 0.00 0.00 4.00
848 989 8.567285 AGTGGAAGAAGTATAAACAGGAATTG 57.433 34.615 0.00 0.00 0.00 2.32
851 992 8.336235 TGGAAGAAGTATAAACAGGAATTGGAT 58.664 33.333 0.00 0.00 0.00 3.41
859 1000 9.555727 GTATAAACAGGAATTGGATAGCTGTTA 57.444 33.333 0.00 0.00 33.87 2.41
869 1010 1.001597 GATAGCTGTTACCGAGTCCCG 60.002 57.143 0.00 0.00 38.18 5.14
885 1026 0.900647 CCCGACTCTTCCTCCACTGT 60.901 60.000 0.00 0.00 0.00 3.55
937 1078 1.066454 CCTTGCGGTTTCGAAAAAGGT 59.934 47.619 22.66 0.00 37.79 3.50
971 1113 3.611674 CAACACCAAACCCGCCCC 61.612 66.667 0.00 0.00 0.00 5.80
972 1114 4.926162 AACACCAAACCCGCCCCC 62.926 66.667 0.00 0.00 0.00 5.40
1045 1187 9.847224 TGTATCCTTTTTATCAAAGATACTCCC 57.153 33.333 8.83 0.00 30.54 4.30
1048 1190 7.574607 TCCTTTTTATCAAAGATACTCCCTCC 58.425 38.462 0.00 0.00 0.00 4.30
1049 1191 6.483640 CCTTTTTATCAAAGATACTCCCTCCG 59.516 42.308 0.00 0.00 0.00 4.63
1050 1192 6.555463 TTTTATCAAAGATACTCCCTCCGT 57.445 37.500 0.00 0.00 0.00 4.69
1051 1193 6.555463 TTTATCAAAGATACTCCCTCCGTT 57.445 37.500 0.00 0.00 0.00 4.44
1052 1194 4.674281 ATCAAAGATACTCCCTCCGTTC 57.326 45.455 0.00 0.00 0.00 3.95
1053 1195 2.426024 TCAAAGATACTCCCTCCGTTCG 59.574 50.000 0.00 0.00 0.00 3.95
1054 1196 1.400737 AAGATACTCCCTCCGTTCGG 58.599 55.000 4.74 4.74 0.00 4.30
1055 1197 0.549950 AGATACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
1056 1198 1.064166 AGATACTCCCTCCGTTCGGAA 60.064 52.381 14.79 0.00 33.41 4.30
1057 1199 1.962100 GATACTCCCTCCGTTCGGAAT 59.038 52.381 14.79 4.68 33.41 3.01
1058 1200 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
1059 1201 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1060 1202 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1061 1203 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1062 1204 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1063 1205 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1064 1206 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1065 1207 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1066 1208 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1067 1209 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1068 1210 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1069 1211 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
1070 1212 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
1071 1213 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
1072 1214 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
1073 1215 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
1074 1216 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
1075 1217 4.868171 CGGAATTACTTGTCTCGGAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
1076 1218 5.350365 CGGAATTACTTGTCTCGGAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
1077 1219 6.037172 CGGAATTACTTGTCTCGGAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
1078 1220 7.189512 GGAATTACTTGTCTCGGAAATGAATG 58.810 38.462 0.00 0.00 0.00 2.67
1079 1221 7.148239 GGAATTACTTGTCTCGGAAATGAATGT 60.148 37.037 0.00 0.00 0.00 2.71
1080 1222 8.786826 AATTACTTGTCTCGGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
1081 1223 8.964476 ATTACTTGTCTCGGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
1082 1224 6.910536 ACTTGTCTCGGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
1083 1225 6.644347 ACTTGTCTCGGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
1084 1226 7.782049 ACTTGTCTCGGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
1085 1227 7.923344 ACTTGTCTCGGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
1086 1228 7.582667 TGTCTCGGAAATGAATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
1087 1229 8.007405 TGTCTCGGAAATGAATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
1088 1230 7.921214 TGTCTCGGAAATGAATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
1089 1231 8.138712 GTCTCGGAAATGAATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
1090 1232 9.350951 TCTCGGAAATGAATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
1091 1233 9.967346 CTCGGAAATGAATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
1118 1260 6.604735 ACGTTTAGATACATCCATTTCTGC 57.395 37.500 0.00 0.00 0.00 4.26
1119 1261 5.234329 ACGTTTAGATACATCCATTTCTGCG 59.766 40.000 0.00 0.00 0.00 5.18
1120 1262 5.462068 CGTTTAGATACATCCATTTCTGCGA 59.538 40.000 0.00 0.00 0.00 5.10
1121 1263 6.562270 CGTTTAGATACATCCATTTCTGCGAC 60.562 42.308 0.00 0.00 0.00 5.19
1122 1264 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
1123 1265 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
1124 1266 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
1125 1267 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
1126 1268 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
1127 1269 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
1128 1270 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
1129 1271 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
1130 1272 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
1131 1273 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
1132 1274 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
1133 1275 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
1134 1276 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
1135 1277 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
1136 1278 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
1137 1279 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
1138 1280 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
1139 1281 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
1140 1282 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1141 1283 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1142 1284 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1143 1285 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1144 1286 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1145 1287 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1163 1305 6.095440 AGGGAGTATTTGTGTTCATGCAATAC 59.905 38.462 0.00 0.00 0.00 1.89
1174 1316 3.339141 TCATGCAATACCGCTTTGTGTA 58.661 40.909 0.00 0.00 0.00 2.90
1186 1328 3.308053 CGCTTTGTGTACATGATCTCCTG 59.692 47.826 0.00 0.00 0.00 3.86
1206 1348 9.612066 TCTCCTGCTTTTATTTTCATTTTGTTT 57.388 25.926 0.00 0.00 0.00 2.83
1293 1435 2.820787 CCTATGTCGATGGAGGAGGTAC 59.179 54.545 3.94 0.00 0.00 3.34
1304 1446 2.169330 GAGGAGGTACGAAGAACCACT 58.831 52.381 0.00 0.00 39.64 4.00
1341 1484 8.460831 TTCAGAAGTTCTTTTTAGTGTTTTGC 57.539 30.769 1.56 0.00 0.00 3.68
1366 1509 4.558226 TGTGAGATGGTAATTGAGCTGT 57.442 40.909 0.00 0.00 0.00 4.40
1370 1513 3.873952 GAGATGGTAATTGAGCTGTGACC 59.126 47.826 0.00 0.00 0.00 4.02
1380 1523 1.067212 GAGCTGTGACCGGTCGATTAT 59.933 52.381 28.70 15.02 0.00 1.28
1435 1578 2.034104 TCATCAAGATGGAGCAGCAC 57.966 50.000 9.96 0.00 39.24 4.40
1438 1581 1.527034 TCAAGATGGAGCAGCACAAC 58.473 50.000 0.00 0.00 0.00 3.32
1462 1605 4.344865 GGCAAGGAGGGCGTGGAA 62.345 66.667 0.00 0.00 0.00 3.53
1543 1686 7.389330 TCGAAAGTTTATCATTTGCAGAGGTTA 59.611 33.333 0.00 0.00 0.00 2.85
1545 1688 7.396540 AAGTTTATCATTTGCAGAGGTTAGG 57.603 36.000 0.00 0.00 0.00 2.69
1636 1779 8.902540 TTCACAGATTTTGTAGTGACAATACT 57.097 30.769 13.68 0.00 44.96 2.12
1637 1780 8.902540 TCACAGATTTTGTAGTGACAATACTT 57.097 30.769 13.68 0.00 44.96 2.24
1638 1781 9.337396 TCACAGATTTTGTAGTGACAATACTTT 57.663 29.630 13.68 0.00 44.96 2.66
1639 1782 9.950680 CACAGATTTTGTAGTGACAATACTTTT 57.049 29.630 13.68 0.00 44.96 2.27
1725 1907 9.734984 GCCTATTTAGAATTAAGGCCATTACTA 57.265 33.333 5.01 0.00 35.15 1.82
1754 1937 6.024552 TCATGAAAGGTATGAAAAAGCACC 57.975 37.500 0.00 0.00 31.98 5.01
1874 2063 6.828785 TGAACTAGGAGCAATTATTTCCCTTC 59.171 38.462 0.00 0.00 0.00 3.46
1934 2123 0.737367 TTGCATCCGCGAGTTCTCTG 60.737 55.000 8.23 0.00 42.97 3.35
1989 2178 5.278022 CCAAAGAGCAGAACAGGTTAGAAAC 60.278 44.000 0.00 0.00 0.00 2.78
1991 2180 2.737252 GAGCAGAACAGGTTAGAAACGG 59.263 50.000 0.00 0.00 0.00 4.44
2089 2280 5.719563 CCATTTGTAACTTTGTATCCCCCTT 59.280 40.000 0.00 0.00 0.00 3.95
2143 2335 2.099921 CCCTCGTCAGTGATCAAGGTAG 59.900 54.545 14.03 0.00 0.00 3.18
2188 2381 4.583489 TGTCTTCGAATCCTACATACCTCC 59.417 45.833 0.00 0.00 0.00 4.30
2216 2414 3.649023 TCCAGCACTCCCAAACTAACTTA 59.351 43.478 0.00 0.00 0.00 2.24
2554 2752 3.391382 CGGACCGAGGCCCTCTTT 61.391 66.667 8.64 0.00 0.00 2.52
2585 2783 4.274459 GTGGATGGTATGCAGATTCTGAAC 59.726 45.833 17.87 10.91 32.44 3.18
2635 2850 4.164843 AGTTTGACTGTACATGGGTTGT 57.835 40.909 0.00 0.00 42.62 3.32
2636 2851 4.532834 AGTTTGACTGTACATGGGTTGTT 58.467 39.130 0.00 0.00 39.87 2.83
2637 2852 5.686753 AGTTTGACTGTACATGGGTTGTTA 58.313 37.500 0.00 0.00 39.87 2.41
2794 3009 0.729116 CGCACCGCTTGATCTGAATT 59.271 50.000 0.00 0.00 0.00 2.17
2818 3033 2.721797 GCAGAACGTGCGTCAATACTTG 60.722 50.000 0.00 0.00 43.99 3.16
2981 3196 0.605589 ACTCCTCAAGAAGGTCAGCG 59.394 55.000 0.00 0.00 46.32 5.18
3006 3221 5.765576 TTGGGTTTTACTGCCTGTATCTA 57.234 39.130 0.00 0.00 0.00 1.98
3007 3222 5.968676 TGGGTTTTACTGCCTGTATCTAT 57.031 39.130 0.00 0.00 0.00 1.98
3008 3223 5.925509 TGGGTTTTACTGCCTGTATCTATC 58.074 41.667 0.00 0.00 0.00 2.08
3009 3224 5.665812 TGGGTTTTACTGCCTGTATCTATCT 59.334 40.000 0.00 0.00 0.00 1.98
3026 3241 9.962783 GTATCTATCTATGTTCTTACGTTTGGT 57.037 33.333 0.00 0.00 0.00 3.67
3174 3389 4.113354 GTGAGATGGTCCGTCTATTTCAC 58.887 47.826 13.89 13.27 40.06 3.18
3206 3421 1.546029 GCTGAATTCCCAAACCAGGAC 59.454 52.381 2.27 0.00 31.50 3.85
3327 3542 0.245539 GGCTGTAAGTGCGTCTGGTA 59.754 55.000 0.00 0.00 35.30 3.25
3328 3543 1.630148 GCTGTAAGTGCGTCTGGTAG 58.370 55.000 0.00 0.00 35.30 3.18
3329 3544 1.067776 GCTGTAAGTGCGTCTGGTAGT 60.068 52.381 0.00 0.00 35.30 2.73
3330 3545 2.163010 GCTGTAAGTGCGTCTGGTAGTA 59.837 50.000 0.00 0.00 35.30 1.82
3334 3549 5.883661 TGTAAGTGCGTCTGGTAGTATAAC 58.116 41.667 0.00 0.00 0.00 1.89
3484 3709 4.465512 GGCCGCGACACAGCAATG 62.466 66.667 8.23 0.00 36.85 2.82
3486 3711 3.725459 CCGCGACACAGCAATGCA 61.725 61.111 8.23 0.00 36.85 3.96
3523 3749 2.358737 CCCGTTCGCTCCAGCTTT 60.359 61.111 0.00 0.00 39.32 3.51
3907 4152 8.757164 AAAGTTCACGAATTTGAAGAAAGTTT 57.243 26.923 0.00 0.00 36.15 2.66
3987 4232 1.021968 AGTGACGAAAAACAGGCCAC 58.978 50.000 5.01 0.00 0.00 5.01
3989 4234 1.133407 GTGACGAAAAACAGGCCACAA 59.867 47.619 5.01 0.00 0.00 3.33
4018 4263 4.757149 CCAGAGTGTTCTTTTCAGGGTTAG 59.243 45.833 0.00 0.00 0.00 2.34
4042 4287 2.873170 TGACGCGCAACAAAGAATAG 57.127 45.000 5.73 0.00 0.00 1.73
4043 4288 2.409012 TGACGCGCAACAAAGAATAGA 58.591 42.857 5.73 0.00 0.00 1.98
4066 4311 2.902705 AACAGCAGGTAGACACGAAA 57.097 45.000 0.00 0.00 0.00 3.46
4069 4314 2.889045 ACAGCAGGTAGACACGAAACTA 59.111 45.455 0.00 0.00 0.00 2.24
4080 4325 2.028385 ACACGAAACTATGAGGTGTCCC 60.028 50.000 0.00 0.00 37.25 4.46
4081 4326 2.028476 CACGAAACTATGAGGTGTCCCA 60.028 50.000 0.00 0.00 0.00 4.37
4082 4327 2.233922 ACGAAACTATGAGGTGTCCCAG 59.766 50.000 0.00 0.00 0.00 4.45
4084 4329 3.306780 CGAAACTATGAGGTGTCCCAGTT 60.307 47.826 0.00 0.00 30.66 3.16
4085 4330 3.703001 AACTATGAGGTGTCCCAGTTG 57.297 47.619 0.00 0.00 29.12 3.16
4086 4331 1.909302 ACTATGAGGTGTCCCAGTTGG 59.091 52.381 0.00 0.00 0.00 3.77
4087 4332 0.618458 TATGAGGTGTCCCAGTTGGC 59.382 55.000 0.00 0.00 0.00 4.52
4088 4333 1.136329 ATGAGGTGTCCCAGTTGGCT 61.136 55.000 0.00 0.00 0.00 4.75
4089 4334 0.472925 TGAGGTGTCCCAGTTGGCTA 60.473 55.000 0.00 0.00 0.00 3.93
4090 4335 0.912486 GAGGTGTCCCAGTTGGCTAT 59.088 55.000 0.00 0.00 0.00 2.97
4091 4336 0.912486 AGGTGTCCCAGTTGGCTATC 59.088 55.000 0.00 0.00 0.00 2.08
4092 4337 0.618458 GGTGTCCCAGTTGGCTATCA 59.382 55.000 0.00 0.00 0.00 2.15
4093 4338 1.679032 GGTGTCCCAGTTGGCTATCAC 60.679 57.143 0.00 0.00 0.00 3.06
4094 4339 1.003118 GTGTCCCAGTTGGCTATCACA 59.997 52.381 0.00 0.00 0.00 3.58
4095 4340 1.278985 TGTCCCAGTTGGCTATCACAG 59.721 52.381 0.00 0.00 0.00 3.66
4113 4358 9.838975 CTATCACAGCTAGTACTGAAATATGAG 57.161 37.037 5.39 0.00 40.25 2.90
4114 4359 7.043961 TCACAGCTAGTACTGAAATATGAGG 57.956 40.000 5.39 0.00 40.25 3.86
4115 4360 6.607600 TCACAGCTAGTACTGAAATATGAGGT 59.392 38.462 5.39 0.00 40.25 3.85
4116 4361 6.920758 CACAGCTAGTACTGAAATATGAGGTC 59.079 42.308 5.39 0.00 40.25 3.85
4117 4362 6.836527 ACAGCTAGTACTGAAATATGAGGTCT 59.163 38.462 5.39 0.00 40.25 3.85
4118 4363 7.999545 ACAGCTAGTACTGAAATATGAGGTCTA 59.000 37.037 5.39 0.00 40.25 2.59
4119 4364 8.511321 CAGCTAGTACTGAAATATGAGGTCTAG 58.489 40.741 5.39 0.00 40.25 2.43
4120 4365 7.668052 AGCTAGTACTGAAATATGAGGTCTAGG 59.332 40.741 5.39 0.00 0.00 3.02
4121 4366 7.094118 GCTAGTACTGAAATATGAGGTCTAGGG 60.094 44.444 5.39 0.00 0.00 3.53
4122 4367 6.078664 AGTACTGAAATATGAGGTCTAGGGG 58.921 44.000 0.00 0.00 0.00 4.79
4123 4368 4.897051 ACTGAAATATGAGGTCTAGGGGT 58.103 43.478 0.00 0.00 0.00 4.95
4124 4369 5.289510 ACTGAAATATGAGGTCTAGGGGTT 58.710 41.667 0.00 0.00 0.00 4.11
4125 4370 5.131142 ACTGAAATATGAGGTCTAGGGGTTG 59.869 44.000 0.00 0.00 0.00 3.77
4126 4371 5.285401 TGAAATATGAGGTCTAGGGGTTGA 58.715 41.667 0.00 0.00 0.00 3.18
4127 4372 5.729229 TGAAATATGAGGTCTAGGGGTTGAA 59.271 40.000 0.00 0.00 0.00 2.69
4128 4373 5.896073 AATATGAGGTCTAGGGGTTGAAG 57.104 43.478 0.00 0.00 0.00 3.02
4129 4374 2.715763 TGAGGTCTAGGGGTTGAAGT 57.284 50.000 0.00 0.00 0.00 3.01
4130 4375 2.537143 TGAGGTCTAGGGGTTGAAGTC 58.463 52.381 0.00 0.00 0.00 3.01
4131 4376 1.832366 GAGGTCTAGGGGTTGAAGTCC 59.168 57.143 0.00 0.00 0.00 3.85
4132 4377 0.535797 GGTCTAGGGGTTGAAGTCCG 59.464 60.000 0.00 0.00 0.00 4.79
4133 4378 0.108281 GTCTAGGGGTTGAAGTCCGC 60.108 60.000 0.00 0.00 38.04 5.54
4134 4379 1.153628 CTAGGGGTTGAAGTCCGCG 60.154 63.158 0.00 0.00 41.75 6.46
4135 4380 1.885163 CTAGGGGTTGAAGTCCGCGT 61.885 60.000 4.92 0.00 41.75 6.01
4136 4381 0.611618 TAGGGGTTGAAGTCCGCGTA 60.612 55.000 4.92 0.00 41.75 4.42
4137 4382 1.739196 GGGGTTGAAGTCCGCGTAC 60.739 63.158 4.92 0.00 0.00 3.67
4138 4383 2.090524 GGGTTGAAGTCCGCGTACG 61.091 63.158 11.84 11.84 39.67 3.67
4139 4384 1.081242 GGTTGAAGTCCGCGTACGA 60.081 57.895 21.65 0.00 43.93 3.43
4140 4385 0.664166 GGTTGAAGTCCGCGTACGAA 60.664 55.000 21.65 0.00 43.93 3.85
4141 4386 0.432361 GTTGAAGTCCGCGTACGAAC 59.568 55.000 21.65 13.25 43.93 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.919385 ATGCCCTTCAGGTAATATTTTCAAT 57.081 32.000 0.00 0.00 38.26 2.57
1 2 7.732222 AATGCCCTTCAGGTAATATTTTCAA 57.268 32.000 0.00 0.00 38.26 2.69
2 3 8.278639 TCTAATGCCCTTCAGGTAATATTTTCA 58.721 33.333 0.00 0.00 38.26 2.69
3 4 8.691661 TCTAATGCCCTTCAGGTAATATTTTC 57.308 34.615 0.00 0.00 38.26 2.29
4 5 8.914011 GTTCTAATGCCCTTCAGGTAATATTTT 58.086 33.333 0.00 0.00 38.26 1.82
5 6 8.282256 AGTTCTAATGCCCTTCAGGTAATATTT 58.718 33.333 0.00 0.00 38.26 1.40
6 7 7.816411 AGTTCTAATGCCCTTCAGGTAATATT 58.184 34.615 0.00 0.00 38.26 1.28
7 8 7.394144 AGTTCTAATGCCCTTCAGGTAATAT 57.606 36.000 0.00 0.00 38.26 1.28
8 9 6.824958 AGTTCTAATGCCCTTCAGGTAATA 57.175 37.500 0.00 0.00 38.26 0.98
9 10 5.717119 AGTTCTAATGCCCTTCAGGTAAT 57.283 39.130 0.00 0.00 38.26 1.89
10 11 5.514500 AAGTTCTAATGCCCTTCAGGTAA 57.486 39.130 0.00 0.00 38.26 2.85
11 12 6.630203 TTAAGTTCTAATGCCCTTCAGGTA 57.370 37.500 0.00 0.00 38.26 3.08
12 13 5.514500 TTAAGTTCTAATGCCCTTCAGGT 57.486 39.130 0.00 0.00 38.26 4.00
13 14 5.358160 CCTTTAAGTTCTAATGCCCTTCAGG 59.642 44.000 0.00 0.00 39.47 3.86
14 15 5.946377 ACCTTTAAGTTCTAATGCCCTTCAG 59.054 40.000 0.00 0.00 0.00 3.02
15 16 5.710099 CACCTTTAAGTTCTAATGCCCTTCA 59.290 40.000 0.00 0.00 0.00 3.02
16 17 5.710567 ACACCTTTAAGTTCTAATGCCCTTC 59.289 40.000 0.00 0.00 0.00 3.46
17 18 5.641155 ACACCTTTAAGTTCTAATGCCCTT 58.359 37.500 0.00 0.00 0.00 3.95
18 19 5.256806 ACACCTTTAAGTTCTAATGCCCT 57.743 39.130 0.00 0.00 0.00 5.19
19 20 6.602009 ACATACACCTTTAAGTTCTAATGCCC 59.398 38.462 0.00 0.00 0.00 5.36
20 21 7.625828 ACATACACCTTTAAGTTCTAATGCC 57.374 36.000 0.00 0.00 0.00 4.40
21 22 7.903431 CGAACATACACCTTTAAGTTCTAATGC 59.097 37.037 0.00 0.00 34.71 3.56
22 23 8.388103 CCGAACATACACCTTTAAGTTCTAATG 58.612 37.037 0.00 0.00 34.71 1.90
23 24 7.065443 GCCGAACATACACCTTTAAGTTCTAAT 59.935 37.037 0.00 0.00 34.71 1.73
24 25 6.369615 GCCGAACATACACCTTTAAGTTCTAA 59.630 38.462 0.00 0.00 34.71 2.10
25 26 5.870978 GCCGAACATACACCTTTAAGTTCTA 59.129 40.000 0.00 0.00 34.71 2.10
26 27 4.694037 GCCGAACATACACCTTTAAGTTCT 59.306 41.667 0.00 0.00 34.71 3.01
27 28 4.453136 TGCCGAACATACACCTTTAAGTTC 59.547 41.667 0.00 0.00 33.82 3.01
28 29 4.391155 TGCCGAACATACACCTTTAAGTT 58.609 39.130 0.00 0.00 0.00 2.66
29 30 4.010667 TGCCGAACATACACCTTTAAGT 57.989 40.909 0.00 0.00 0.00 2.24
30 31 4.634004 TCATGCCGAACATACACCTTTAAG 59.366 41.667 0.00 0.00 36.64 1.85
31 32 4.580868 TCATGCCGAACATACACCTTTAA 58.419 39.130 0.00 0.00 36.64 1.52
32 33 4.209307 TCATGCCGAACATACACCTTTA 57.791 40.909 0.00 0.00 36.64 1.85
33 34 3.066291 TCATGCCGAACATACACCTTT 57.934 42.857 0.00 0.00 36.64 3.11
34 35 2.779755 TCATGCCGAACATACACCTT 57.220 45.000 0.00 0.00 36.64 3.50
35 36 2.779755 TTCATGCCGAACATACACCT 57.220 45.000 0.00 0.00 36.64 4.00
36 37 4.127171 ACTATTCATGCCGAACATACACC 58.873 43.478 0.00 0.00 36.64 4.16
37 38 6.838198 TTACTATTCATGCCGAACATACAC 57.162 37.500 0.00 0.00 36.64 2.90
38 39 9.203421 CTTATTACTATTCATGCCGAACATACA 57.797 33.333 0.00 0.00 36.64 2.29
39 40 8.169268 GCTTATTACTATTCATGCCGAACATAC 58.831 37.037 0.00 0.00 36.64 2.39
40 41 7.875554 TGCTTATTACTATTCATGCCGAACATA 59.124 33.333 0.00 0.00 36.64 2.29
41 42 6.710295 TGCTTATTACTATTCATGCCGAACAT 59.290 34.615 0.00 0.00 40.66 2.71
42 43 6.052360 TGCTTATTACTATTCATGCCGAACA 58.948 36.000 0.00 0.00 36.12 3.18
43 44 6.539649 TGCTTATTACTATTCATGCCGAAC 57.460 37.500 0.00 0.00 36.12 3.95
44 45 6.765989 AGTTGCTTATTACTATTCATGCCGAA 59.234 34.615 0.00 0.00 38.22 4.30
45 46 6.288294 AGTTGCTTATTACTATTCATGCCGA 58.712 36.000 0.00 0.00 0.00 5.54
46 47 6.545504 AGTTGCTTATTACTATTCATGCCG 57.454 37.500 0.00 0.00 0.00 5.69
47 48 8.833231 TCTAGTTGCTTATTACTATTCATGCC 57.167 34.615 0.00 0.00 0.00 4.40
62 63 8.499162 GCGAATGAACATATATTCTAGTTGCTT 58.501 33.333 0.00 0.00 32.48 3.91
63 64 7.657354 TGCGAATGAACATATATTCTAGTTGCT 59.343 33.333 0.00 0.00 32.48 3.91
64 65 7.796838 TGCGAATGAACATATATTCTAGTTGC 58.203 34.615 0.00 0.00 32.48 4.17
93 94 6.238648 GCACGGGCACATATATTCTAGTTTTT 60.239 38.462 3.77 0.00 40.72 1.94
94 95 5.238650 GCACGGGCACATATATTCTAGTTTT 59.761 40.000 3.77 0.00 40.72 2.43
95 96 4.755123 GCACGGGCACATATATTCTAGTTT 59.245 41.667 3.77 0.00 40.72 2.66
96 97 4.315803 GCACGGGCACATATATTCTAGTT 58.684 43.478 3.77 0.00 40.72 2.24
97 98 3.926616 GCACGGGCACATATATTCTAGT 58.073 45.455 3.77 0.00 40.72 2.57
116 117 4.036804 GAATGCCCGTGCGTTGCA 62.037 61.111 0.86 8.11 46.55 4.08
117 118 4.036804 TGAATGCCCGTGCGTTGC 62.037 61.111 0.86 0.00 46.55 4.17
118 119 2.126888 GTGAATGCCCGTGCGTTG 60.127 61.111 0.86 0.00 46.55 4.10
120 121 2.852495 CTAGGTGAATGCCCGTGCGT 62.852 60.000 0.00 0.00 41.78 5.24
121 122 2.125310 TAGGTGAATGCCCGTGCG 60.125 61.111 0.00 0.00 41.78 5.34
122 123 1.078426 ACTAGGTGAATGCCCGTGC 60.078 57.895 0.00 0.00 38.26 5.34
123 124 0.537188 AGACTAGGTGAATGCCCGTG 59.463 55.000 0.00 0.00 0.00 4.94
124 125 1.276622 AAGACTAGGTGAATGCCCGT 58.723 50.000 0.00 0.00 0.00 5.28
125 126 2.403252 AAAGACTAGGTGAATGCCCG 57.597 50.000 0.00 0.00 0.00 6.13
126 127 4.755266 TCTAAAGACTAGGTGAATGCCC 57.245 45.455 0.00 0.00 0.00 5.36
127 128 7.631717 ATTTTCTAAAGACTAGGTGAATGCC 57.368 36.000 0.00 0.00 0.00 4.40
128 129 7.486232 GCAATTTTCTAAAGACTAGGTGAATGC 59.514 37.037 0.00 0.00 0.00 3.56
129 130 8.514594 TGCAATTTTCTAAAGACTAGGTGAATG 58.485 33.333 0.00 0.00 0.00 2.67
130 131 8.635765 TGCAATTTTCTAAAGACTAGGTGAAT 57.364 30.769 0.00 0.00 0.00 2.57
131 132 7.174946 CCTGCAATTTTCTAAAGACTAGGTGAA 59.825 37.037 0.00 0.00 0.00 3.18
132 133 6.655003 CCTGCAATTTTCTAAAGACTAGGTGA 59.345 38.462 0.00 0.00 0.00 4.02
133 134 6.431234 ACCTGCAATTTTCTAAAGACTAGGTG 59.569 38.462 0.00 0.00 32.82 4.00
134 135 6.431234 CACCTGCAATTTTCTAAAGACTAGGT 59.569 38.462 0.00 0.00 34.22 3.08
135 136 6.623767 GCACCTGCAATTTTCTAAAGACTAGG 60.624 42.308 0.00 0.00 41.59 3.02
136 137 6.317857 GCACCTGCAATTTTCTAAAGACTAG 58.682 40.000 0.00 0.00 41.59 2.57
137 138 5.183140 GGCACCTGCAATTTTCTAAAGACTA 59.817 40.000 0.00 0.00 44.36 2.59
138 139 4.021981 GGCACCTGCAATTTTCTAAAGACT 60.022 41.667 0.00 0.00 44.36 3.24
139 140 4.237724 GGCACCTGCAATTTTCTAAAGAC 58.762 43.478 0.00 0.00 44.36 3.01
217 218 2.095853 AGACTTGTGTGCGAACTTTGTG 59.904 45.455 0.00 0.00 0.00 3.33
275 276 2.047274 CAAGGCCATCGTCGTGGT 60.047 61.111 5.01 0.00 41.47 4.16
291 292 1.243342 CCCGATTGCCTTTGAGTGCA 61.243 55.000 0.00 0.00 35.27 4.57
294 295 0.400213 TGTCCCGATTGCCTTTGAGT 59.600 50.000 0.00 0.00 0.00 3.41
316 317 2.817844 GGGTCGAAAAAGTACCTTGCAT 59.182 45.455 0.00 0.00 33.59 3.96
317 318 2.223745 GGGTCGAAAAAGTACCTTGCA 58.776 47.619 0.00 0.00 33.59 4.08
318 319 2.031420 GTGGGTCGAAAAAGTACCTTGC 60.031 50.000 0.00 0.00 33.59 4.01
319 320 3.207778 TGTGGGTCGAAAAAGTACCTTG 58.792 45.455 0.00 0.00 33.59 3.61
320 321 3.564053 TGTGGGTCGAAAAAGTACCTT 57.436 42.857 0.00 0.00 33.59 3.50
365 376 2.019249 CACATTCCGCAATCACCTCAT 58.981 47.619 0.00 0.00 0.00 2.90
431 569 4.684724 AGGGTGTTGACTACCTGATCTAA 58.315 43.478 0.00 0.00 38.30 2.10
482 623 3.274288 GAGGAACCTATGTGGCTTCAAG 58.726 50.000 0.00 0.00 40.22 3.02
531 672 0.687920 TTGTATTGCTGTCCCGTGGA 59.312 50.000 0.00 0.00 0.00 4.02
666 807 3.916359 TCAACAGGGTTGTGACTTGTA 57.084 42.857 8.75 0.00 37.67 2.41
703 844 1.202463 CGAATGTGCGAAGGATCCTCT 60.202 52.381 16.52 5.38 0.00 3.69
786 927 5.646793 CAGATGCGAAATCTGATAATGGGAT 59.353 40.000 18.73 0.00 46.25 3.85
813 954 2.236395 ACTTCTTCCACTTATGACCCCG 59.764 50.000 0.00 0.00 0.00 5.73
815 956 8.044908 TGTTTATACTTCTTCCACTTATGACCC 58.955 37.037 0.00 0.00 0.00 4.46
843 984 4.694339 ACTCGGTAACAGCTATCCAATTC 58.306 43.478 0.00 0.00 0.00 2.17
848 989 1.340568 GGGACTCGGTAACAGCTATCC 59.659 57.143 0.00 0.00 0.00 2.59
851 992 0.035152 TCGGGACTCGGTAACAGCTA 60.035 55.000 0.00 0.00 39.77 3.32
869 1010 3.161866 AGAAGACAGTGGAGGAAGAGTC 58.838 50.000 0.00 0.00 0.00 3.36
885 1026 0.250727 CTGCCCGTTTCCCAAGAAGA 60.251 55.000 0.00 0.00 32.35 2.87
937 1078 1.825474 GTTGGGAGGACGAAGATGAGA 59.175 52.381 0.00 0.00 0.00 3.27
971 1113 1.043816 AGTATCGAGATGGTGGCTGG 58.956 55.000 0.00 0.00 0.00 4.85
972 1114 1.871408 GCAGTATCGAGATGGTGGCTG 60.871 57.143 0.00 0.00 0.00 4.85
1041 1183 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1042 1184 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1043 1185 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1044 1186 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1045 1187 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
1046 1188 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
1047 1189 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
1048 1190 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
1049 1191 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
1050 1192 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
1051 1193 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
1052 1194 4.868171 TCATTTCCGAGACAAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
1053 1195 6.737254 TTCATTTCCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
1054 1196 7.752695 ACATTCATTTCCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
1055 1197 7.687941 ACATTCATTTCCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
1056 1198 8.964476 ATACATTCATTTCCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
1057 1199 8.258007 AGATACATTCATTTCCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
1058 1200 7.782049 AGATACATTCATTTCCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
1059 1201 6.644347 AGATACATTCATTTCCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
1060 1202 8.138074 TCTAGATACATTCATTTCCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
1061 1203 8.007405 TCTAGATACATTCATTTCCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
1062 1204 7.582667 TCTAGATACATTCATTTCCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
1063 1205 8.138712 AGTTCTAGATACATTCATTTCCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
1064 1206 8.239038 AGTTCTAGATACATTCATTTCCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
1065 1207 9.967346 TTAGTTCTAGATACATTCATTTCCGAG 57.033 33.333 0.00 0.00 0.00 4.63
1092 1234 8.774586 GCAGAAATGGATGTATCTAAACGTATT 58.225 33.333 0.00 0.00 0.00 1.89
1093 1235 7.116376 CGCAGAAATGGATGTATCTAAACGTAT 59.884 37.037 0.00 0.00 0.00 3.06
1094 1236 6.419710 CGCAGAAATGGATGTATCTAAACGTA 59.580 38.462 0.00 0.00 0.00 3.57
1095 1237 5.234329 CGCAGAAATGGATGTATCTAAACGT 59.766 40.000 0.00 0.00 0.00 3.99
1096 1238 5.462068 TCGCAGAAATGGATGTATCTAAACG 59.538 40.000 0.00 0.00 0.00 3.60
1097 1239 6.257849 TGTCGCAGAAATGGATGTATCTAAAC 59.742 38.462 0.00 0.00 39.69 2.01
1098 1240 6.345298 TGTCGCAGAAATGGATGTATCTAAA 58.655 36.000 0.00 0.00 39.69 1.85
1099 1241 5.912892 TGTCGCAGAAATGGATGTATCTAA 58.087 37.500 0.00 0.00 39.69 2.10
1100 1242 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
1101 1243 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
1102 1244 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
1103 1245 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
1104 1246 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
1105 1247 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
1106 1248 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
1107 1249 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
1108 1250 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
1109 1251 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
1110 1252 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
1111 1253 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
1112 1254 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
1113 1255 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
1114 1256 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
1115 1257 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
1116 1258 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
1117 1259 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
1118 1260 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
1119 1261 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1120 1262 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1121 1263 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1122 1264 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1123 1265 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1124 1266 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1125 1267 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1126 1268 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
1127 1269 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
1128 1270 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
1129 1271 1.479323 CAAATACTCCCTCCGTTCGGA 59.521 52.381 13.34 13.34 0.00 4.55
1130 1272 1.206371 ACAAATACTCCCTCCGTTCGG 59.794 52.381 4.74 4.74 0.00 4.30
1131 1273 2.268298 CACAAATACTCCCTCCGTTCG 58.732 52.381 0.00 0.00 0.00 3.95
1132 1274 3.329929 ACACAAATACTCCCTCCGTTC 57.670 47.619 0.00 0.00 0.00 3.95
1133 1275 3.071892 TGAACACAAATACTCCCTCCGTT 59.928 43.478 0.00 0.00 0.00 4.44
1134 1276 2.635915 TGAACACAAATACTCCCTCCGT 59.364 45.455 0.00 0.00 0.00 4.69
1135 1277 3.328382 TGAACACAAATACTCCCTCCG 57.672 47.619 0.00 0.00 0.00 4.63
1136 1278 3.378427 GCATGAACACAAATACTCCCTCC 59.622 47.826 0.00 0.00 0.00 4.30
1137 1279 4.009675 TGCATGAACACAAATACTCCCTC 58.990 43.478 0.00 0.00 0.00 4.30
1138 1280 4.032960 TGCATGAACACAAATACTCCCT 57.967 40.909 0.00 0.00 0.00 4.20
1139 1281 4.782019 TTGCATGAACACAAATACTCCC 57.218 40.909 0.00 0.00 0.00 4.30
1140 1282 6.265577 GGTATTGCATGAACACAAATACTCC 58.734 40.000 0.00 0.00 0.00 3.85
1141 1283 5.965334 CGGTATTGCATGAACACAAATACTC 59.035 40.000 0.00 0.00 0.00 2.59
1142 1284 5.676079 GCGGTATTGCATGAACACAAATACT 60.676 40.000 0.00 0.00 34.15 2.12
1143 1285 4.499040 GCGGTATTGCATGAACACAAATAC 59.501 41.667 0.00 0.79 34.15 1.89
1144 1286 4.397730 AGCGGTATTGCATGAACACAAATA 59.602 37.500 0.00 0.00 37.31 1.40
1145 1287 3.193267 AGCGGTATTGCATGAACACAAAT 59.807 39.130 0.00 0.00 37.31 2.32
1163 1305 2.609459 GGAGATCATGTACACAAAGCGG 59.391 50.000 0.00 0.00 0.00 5.52
1174 1316 7.707624 TGAAAATAAAAGCAGGAGATCATGT 57.292 32.000 0.00 0.00 0.00 3.21
1293 1435 8.342634 TGAAATTCTTTCTTTAGTGGTTCTTCG 58.657 33.333 0.00 0.00 40.32 3.79
1322 1464 7.116233 CACAACAGCAAAACACTAAAAAGAACT 59.884 33.333 0.00 0.00 0.00 3.01
1326 1469 6.806249 TCTCACAACAGCAAAACACTAAAAAG 59.194 34.615 0.00 0.00 0.00 2.27
1331 1474 4.275689 CCATCTCACAACAGCAAAACACTA 59.724 41.667 0.00 0.00 0.00 2.74
1341 1484 4.940046 AGCTCAATTACCATCTCACAACAG 59.060 41.667 0.00 0.00 0.00 3.16
1366 1509 3.805422 GCAATACAATAATCGACCGGTCA 59.195 43.478 32.80 20.42 0.00 4.02
1370 1513 6.364976 TCATACTGCAATACAATAATCGACCG 59.635 38.462 0.00 0.00 0.00 4.79
1380 1523 5.307976 AGCCCTATCTCATACTGCAATACAA 59.692 40.000 0.00 0.00 0.00 2.41
1435 1578 1.001181 CCCTCCTTGCCATTTGTGTTG 59.999 52.381 0.00 0.00 0.00 3.33
1438 1581 1.593265 GCCCTCCTTGCCATTTGTG 59.407 57.895 0.00 0.00 0.00 3.33
1639 1782 9.715121 GATGTATTATCACTATCCCCGTAAAAA 57.285 33.333 0.00 0.00 0.00 1.94
1640 1783 8.316214 GGATGTATTATCACTATCCCCGTAAAA 58.684 37.037 0.00 0.00 32.93 1.52
1641 1784 7.676893 AGGATGTATTATCACTATCCCCGTAAA 59.323 37.037 0.00 0.00 38.42 2.01
1642 1785 7.186972 AGGATGTATTATCACTATCCCCGTAA 58.813 38.462 0.00 0.00 38.42 3.18
1643 1786 6.738635 AGGATGTATTATCACTATCCCCGTA 58.261 40.000 0.00 0.00 38.42 4.02
1644 1787 5.590818 AGGATGTATTATCACTATCCCCGT 58.409 41.667 0.00 0.00 38.42 5.28
1645 1788 7.342284 ACTTAGGATGTATTATCACTATCCCCG 59.658 40.741 0.00 0.00 38.42 5.73
1646 1789 8.611051 ACTTAGGATGTATTATCACTATCCCC 57.389 38.462 0.00 0.00 38.42 4.81
1647 1790 9.877178 CAACTTAGGATGTATTATCACTATCCC 57.123 37.037 0.00 0.00 38.42 3.85
1725 1907 8.411683 GCTTTTTCATACCTTTCATGATCATCT 58.588 33.333 4.86 0.00 32.63 2.90
1729 1911 6.753744 GGTGCTTTTTCATACCTTTCATGATC 59.246 38.462 0.00 0.00 32.63 2.92
1743 1925 0.816018 TCGCTTCCGGTGCTTTTTCA 60.816 50.000 17.12 0.00 34.56 2.69
1754 1937 6.577427 GCTAATTAACCAATTATTCGCTTCCG 59.423 38.462 0.00 0.00 36.32 4.30
1833 2016 9.522804 CTCCTAGTTCATTCAGTAATCTGTTAC 57.477 37.037 0.00 0.00 41.91 2.50
1847 2036 7.357471 AGGGAAATAATTGCTCCTAGTTCATT 58.643 34.615 0.00 0.00 0.00 2.57
1874 2063 4.494526 GGAATTTTGCTGCACACAGTTTTG 60.495 41.667 0.00 0.00 46.30 2.44
1934 2123 1.812922 CGAGTCCTCATGCACAGCC 60.813 63.158 0.00 0.00 0.00 4.85
2143 2335 6.861144 ACATAAGGGTTTCTCTACTTCGTAC 58.139 40.000 0.00 0.00 0.00 3.67
2188 2381 0.321564 TTGGGAGTGCTGGATGAACG 60.322 55.000 0.00 0.00 0.00 3.95
2554 2752 2.024560 TGCATACCATCCACCCATTCAA 60.025 45.455 0.00 0.00 0.00 2.69
2585 2783 5.767665 AGTAGCAGTACACATAGATCTCTGG 59.232 44.000 12.29 4.52 0.00 3.86
2635 2850 5.163663 GGCATGAATCCTGAAACGAATGTAA 60.164 40.000 0.00 0.00 0.00 2.41
2636 2851 4.335315 GGCATGAATCCTGAAACGAATGTA 59.665 41.667 0.00 0.00 0.00 2.29
2637 2852 3.129287 GGCATGAATCCTGAAACGAATGT 59.871 43.478 0.00 0.00 0.00 2.71
2794 3009 1.163420 ATTGACGCACGTTCTGCCAA 61.163 50.000 0.00 0.00 43.84 4.52
2981 3196 6.120220 AGATACAGGCAGTAAAACCCAATAC 58.880 40.000 0.00 0.00 36.05 1.89
3007 3222 9.979578 TTAGTAAACCAAACGTAAGAACATAGA 57.020 29.630 0.00 0.00 43.62 1.98
3009 3224 9.762933 AGTTAGTAAACCAAACGTAAGAACATA 57.237 29.630 0.00 0.00 37.22 2.29
3026 3241 5.179368 GTCTGCAGCAACATCAGTTAGTAAA 59.821 40.000 9.47 0.00 35.85 2.01
3206 3421 3.241553 CGCACACTTAATCTGAGATGTCG 59.758 47.826 0.00 0.00 0.00 4.35
3268 3483 1.941294 CAGCAGCATCTTCACTGGATC 59.059 52.381 0.00 0.00 34.38 3.36
3327 3542 9.706691 CCATCATCCAATACTTTACGTTATACT 57.293 33.333 0.00 0.00 0.00 2.12
3328 3543 9.701098 TCCATCATCCAATACTTTACGTTATAC 57.299 33.333 0.00 0.00 0.00 1.47
3330 3545 9.793259 ATTCCATCATCCAATACTTTACGTTAT 57.207 29.630 0.00 0.00 0.00 1.89
3334 3549 6.017192 TGCATTCCATCATCCAATACTTTACG 60.017 38.462 0.00 0.00 0.00 3.18
3391 3607 4.229639 TCCATTCTATGATGCAGAGGTCT 58.770 43.478 0.00 0.00 0.00 3.85
3420 3636 6.596888 CAGCTCTCCATTCTATGTCTCAAAAA 59.403 38.462 0.00 0.00 0.00 1.94
3422 3638 5.396101 CCAGCTCTCCATTCTATGTCTCAAA 60.396 44.000 0.00 0.00 0.00 2.69
3425 3641 3.554752 GCCAGCTCTCCATTCTATGTCTC 60.555 52.174 0.00 0.00 0.00 3.36
3426 3642 2.368221 GCCAGCTCTCCATTCTATGTCT 59.632 50.000 0.00 0.00 0.00 3.41
3428 3644 1.069823 CGCCAGCTCTCCATTCTATGT 59.930 52.381 0.00 0.00 0.00 2.29
3429 3645 1.793258 CGCCAGCTCTCCATTCTATG 58.207 55.000 0.00 0.00 0.00 2.23
3476 3701 1.577922 CGAACTGCTGCATTGCTGT 59.422 52.632 15.71 4.87 44.83 4.40
3523 3749 0.667487 CTGCAAAGAGAGCGGACGAA 60.667 55.000 0.00 0.00 40.83 3.85
3863 4107 8.463607 TGAACTTTTTCTTTAAAATCCGTGACT 58.536 29.630 0.00 0.00 35.29 3.41
3864 4108 8.529102 GTGAACTTTTTCTTTAAAATCCGTGAC 58.471 33.333 0.00 0.00 35.29 3.67
3876 4121 8.980143 TCTTCAAATTCGTGAACTTTTTCTTT 57.020 26.923 0.00 0.00 33.92 2.52
3952 4197 9.545611 TTTTCGTCACTTGTTACTCTTTTTAAC 57.454 29.630 0.00 0.00 0.00 2.01
3970 4215 1.464734 TTGTGGCCTGTTTTTCGTCA 58.535 45.000 3.32 0.00 0.00 4.35
3989 4234 5.105351 CCTGAAAAGAACACTCTGGGTTTTT 60.105 40.000 0.00 0.00 30.03 1.94
4052 4297 4.158025 ACCTCATAGTTTCGTGTCTACCTG 59.842 45.833 0.00 0.00 0.00 4.00
4059 4304 2.028385 GGGACACCTCATAGTTTCGTGT 60.028 50.000 0.00 0.00 40.24 4.49
4066 4311 1.909302 CCAACTGGGACACCTCATAGT 59.091 52.381 0.00 0.00 40.01 2.12
4069 4314 1.136329 AGCCAACTGGGACACCTCAT 61.136 55.000 0.00 0.00 40.01 2.90
4087 4332 9.838975 CTCATATTTCAGTACTAGCTGTGATAG 57.161 37.037 0.00 0.00 37.70 2.08
4088 4333 8.797438 CCTCATATTTCAGTACTAGCTGTGATA 58.203 37.037 0.00 0.00 37.70 2.15
4089 4334 7.288852 ACCTCATATTTCAGTACTAGCTGTGAT 59.711 37.037 0.00 0.00 37.70 3.06
4090 4335 6.607600 ACCTCATATTTCAGTACTAGCTGTGA 59.392 38.462 0.00 0.00 37.70 3.58
4091 4336 6.810911 ACCTCATATTTCAGTACTAGCTGTG 58.189 40.000 0.00 0.00 37.70 3.66
4092 4337 6.836527 AGACCTCATATTTCAGTACTAGCTGT 59.163 38.462 0.00 0.00 37.70 4.40
4093 4338 7.283625 AGACCTCATATTTCAGTACTAGCTG 57.716 40.000 0.00 0.00 37.81 4.24
4094 4339 7.668052 CCTAGACCTCATATTTCAGTACTAGCT 59.332 40.741 0.00 0.00 0.00 3.32
4095 4340 7.094118 CCCTAGACCTCATATTTCAGTACTAGC 60.094 44.444 0.00 0.00 0.00 3.42
4096 4341 7.394923 CCCCTAGACCTCATATTTCAGTACTAG 59.605 44.444 0.00 0.00 0.00 2.57
4097 4342 7.146997 ACCCCTAGACCTCATATTTCAGTACTA 60.147 40.741 0.00 0.00 0.00 1.82
4098 4343 6.078664 CCCCTAGACCTCATATTTCAGTACT 58.921 44.000 0.00 0.00 0.00 2.73
4099 4344 5.839606 ACCCCTAGACCTCATATTTCAGTAC 59.160 44.000 0.00 0.00 0.00 2.73
4100 4345 6.039415 ACCCCTAGACCTCATATTTCAGTA 57.961 41.667 0.00 0.00 0.00 2.74
4101 4346 4.897051 ACCCCTAGACCTCATATTTCAGT 58.103 43.478 0.00 0.00 0.00 3.41
4102 4347 5.366768 TCAACCCCTAGACCTCATATTTCAG 59.633 44.000 0.00 0.00 0.00 3.02
4103 4348 5.285401 TCAACCCCTAGACCTCATATTTCA 58.715 41.667 0.00 0.00 0.00 2.69
4104 4349 5.888982 TCAACCCCTAGACCTCATATTTC 57.111 43.478 0.00 0.00 0.00 2.17
4105 4350 5.731678 ACTTCAACCCCTAGACCTCATATTT 59.268 40.000 0.00 0.00 0.00 1.40
4106 4351 5.289510 ACTTCAACCCCTAGACCTCATATT 58.710 41.667 0.00 0.00 0.00 1.28
4107 4352 4.897051 ACTTCAACCCCTAGACCTCATAT 58.103 43.478 0.00 0.00 0.00 1.78
4108 4353 4.287552 GACTTCAACCCCTAGACCTCATA 58.712 47.826 0.00 0.00 0.00 2.15
4109 4354 3.108376 GACTTCAACCCCTAGACCTCAT 58.892 50.000 0.00 0.00 0.00 2.90
4110 4355 2.537143 GACTTCAACCCCTAGACCTCA 58.463 52.381 0.00 0.00 0.00 3.86
4111 4356 1.832366 GGACTTCAACCCCTAGACCTC 59.168 57.143 0.00 0.00 0.00 3.85
4112 4357 1.895866 CGGACTTCAACCCCTAGACCT 60.896 57.143 0.00 0.00 0.00 3.85
4113 4358 0.535797 CGGACTTCAACCCCTAGACC 59.464 60.000 0.00 0.00 0.00 3.85
4114 4359 0.108281 GCGGACTTCAACCCCTAGAC 60.108 60.000 0.00 0.00 0.00 2.59
4115 4360 1.601419 CGCGGACTTCAACCCCTAGA 61.601 60.000 0.00 0.00 0.00 2.43
4116 4361 1.153628 CGCGGACTTCAACCCCTAG 60.154 63.158 0.00 0.00 0.00 3.02
4117 4362 0.611618 TACGCGGACTTCAACCCCTA 60.612 55.000 12.47 0.00 0.00 3.53
4118 4363 1.909781 TACGCGGACTTCAACCCCT 60.910 57.895 12.47 0.00 0.00 4.79
4119 4364 1.739196 GTACGCGGACTTCAACCCC 60.739 63.158 15.95 0.00 0.00 4.95
4120 4365 2.090524 CGTACGCGGACTTCAACCC 61.091 63.158 21.13 0.00 0.00 4.11
4121 4366 0.664166 TTCGTACGCGGACTTCAACC 60.664 55.000 21.13 0.00 38.89 3.77
4122 4367 0.432361 GTTCGTACGCGGACTTCAAC 59.568 55.000 21.13 15.08 43.02 3.18
4123 4368 2.800096 GTTCGTACGCGGACTTCAA 58.200 52.632 21.13 6.59 43.02 2.69
4124 4369 4.539152 GTTCGTACGCGGACTTCA 57.461 55.556 21.13 0.00 43.02 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.