Multiple sequence alignment - TraesCS4B01G197000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G197000 chr4B 100.000 5472 0 0 1 5472 424290845 424285374 0.000000e+00 10105
1 TraesCS4B01G197000 chr4D 92.200 4372 123 55 591 4893 342091350 342087128 0.000000e+00 5984
2 TraesCS4B01G197000 chr4D 88.020 601 42 11 1 585 342091977 342091391 0.000000e+00 684
3 TraesCS4B01G197000 chr4A 91.121 4494 156 67 591 4968 124204952 124209318 0.000000e+00 5864
4 TraesCS4B01G197000 chr4A 87.273 605 41 17 1 585 124204323 124204911 0.000000e+00 658
5 TraesCS4B01G197000 chr5B 97.379 496 13 0 4977 5472 558705869 558705374 0.000000e+00 845
6 TraesCS4B01G197000 chr5B 97.177 496 14 0 4977 5472 682360605 682361100 0.000000e+00 839
7 TraesCS4B01G197000 chr5B 96.988 498 15 0 4975 5472 445178968 445179465 0.000000e+00 837
8 TraesCS4B01G197000 chr7B 97.379 496 12 1 4977 5472 217303937 217303443 0.000000e+00 843
9 TraesCS4B01G197000 chr7B 97.177 496 14 0 4977 5472 608187057 608187552 0.000000e+00 839
10 TraesCS4B01G197000 chr6B 97.177 496 14 0 4977 5472 502012774 502012279 0.000000e+00 839
11 TraesCS4B01G197000 chr6B 96.573 496 17 0 4977 5472 719411981 719411486 0.000000e+00 822
12 TraesCS4B01G197000 chr3B 97.177 496 14 0 4977 5472 49869367 49869862 0.000000e+00 839
13 TraesCS4B01G197000 chr1B 96.755 493 16 0 4977 5469 69572736 69573228 0.000000e+00 822
14 TraesCS4B01G197000 chr5D 78.131 535 86 20 41 564 448945144 448944630 1.480000e-80 311


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G197000 chr4B 424285374 424290845 5471 True 10105 10105 100.000 1 5472 1 chr4B.!!$R1 5471
1 TraesCS4B01G197000 chr4D 342087128 342091977 4849 True 3334 5984 90.110 1 4893 2 chr4D.!!$R1 4892
2 TraesCS4B01G197000 chr4A 124204323 124209318 4995 False 3261 5864 89.197 1 4968 2 chr4A.!!$F1 4967
3 TraesCS4B01G197000 chr5D 448944630 448945144 514 True 311 311 78.131 41 564 1 chr5D.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 101 0.472471 ACAGTGACGTGATTTGGGGT 59.528 50.0 0.00 0.0 0.0 4.95 F
1974 2070 0.034186 GGGCCATGTGATGTGAGGAA 60.034 55.0 4.39 0.0 0.0 3.36 F
2089 2207 0.394192 CAGTCAGTCAGGCTGGAACA 59.606 55.0 15.73 0.0 46.3 3.18 F
3721 3941 0.655733 CAACTTGTCACGCGTCCTTT 59.344 50.0 9.86 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 2206 0.170561 GCAATGGACTGCTTGCTCTG 59.829 55.0 0.00 0.0 43.41 3.35 R
3644 3864 0.030101 CGTCGAGGCCTTCTCATCTC 59.970 60.0 6.77 0.0 42.55 2.75 R
3750 3970 0.672401 GATGAAACGAACGAGGGCCA 60.672 55.0 6.18 0.0 0.00 5.36 R
5374 5610 0.029834 CAGTGCACCAGAACAGCAAC 59.970 55.0 14.63 0.0 40.35 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 78 2.411628 AACGGGCTAATATGTGCACA 57.588 45.000 24.08 24.08 32.02 4.57
82 84 3.270027 GGCTAATATGTGCACACAGTGA 58.730 45.455 24.37 5.66 45.48 3.41
83 85 3.063997 GGCTAATATGTGCACACAGTGAC 59.936 47.826 24.37 10.17 45.48 3.67
91 97 1.330213 TGCACACAGTGACGTGATTTG 59.670 47.619 17.78 0.00 39.34 2.32
95 101 0.472471 ACAGTGACGTGATTTGGGGT 59.528 50.000 0.00 0.00 0.00 4.95
112 118 3.012730 TGGGGTCATTGGATGAAAATCCT 59.987 43.478 6.33 0.00 41.69 3.24
117 123 4.829492 GTCATTGGATGAAAATCCTAGGGG 59.171 45.833 9.46 0.00 41.69 4.79
128 134 1.137594 TCCTAGGGGTGTGGTTTGGG 61.138 60.000 9.46 0.00 0.00 4.12
134 140 1.076513 GGGGTGTGGTTTGGGTAGAAT 59.923 52.381 0.00 0.00 0.00 2.40
177 183 5.294060 TGCAAAATTGTCCTTCTGCTTTTTC 59.706 36.000 0.00 0.00 0.00 2.29
180 186 5.712152 AATTGTCCTTCTGCTTTTTCGAT 57.288 34.783 0.00 0.00 0.00 3.59
191 197 1.976045 CTTTTTCGATTTGAACCCGCG 59.024 47.619 0.00 0.00 35.97 6.46
215 222 3.963374 TCCACATCTTACTCTCCCATCAG 59.037 47.826 0.00 0.00 0.00 2.90
228 235 7.390027 ACTCTCCCATCAGTAAATATGTATGC 58.610 38.462 0.00 0.00 0.00 3.14
355 365 9.994432 GGAAGAAGAACAATATTGACTATGTTG 57.006 33.333 22.16 5.14 40.18 3.33
393 403 4.119862 GCTTATAGATGTTGCGGTCAAGA 58.880 43.478 0.00 0.00 31.93 3.02
401 411 4.582701 TGTTGCGGTCAAGATTCAAAAT 57.417 36.364 0.00 0.00 31.93 1.82
437 461 6.688385 CCAGCATTAGTATTGTTTCGAACATG 59.312 38.462 0.00 0.00 41.79 3.21
480 504 4.755123 GGTCAAACCATATCTACATTCGGG 59.245 45.833 0.00 0.00 38.42 5.14
585 609 2.030274 GGTGTAGTGCGGCTTGATTTTT 60.030 45.455 0.00 0.00 0.00 1.94
620 679 2.350964 GCTAGACTGAATCCGTCGGATC 60.351 54.545 26.54 18.98 42.27 3.36
795 863 3.239627 TTCCTCCCTCTGGCTCCGT 62.240 63.158 0.00 0.00 0.00 4.69
1670 1741 0.040646 ATCAGGTACCGTCCAGTCCA 59.959 55.000 6.18 0.00 0.00 4.02
1697 1768 2.001803 CCCTTGCATTCTCCCTCCA 58.998 57.895 0.00 0.00 0.00 3.86
1755 1831 5.734855 TTCACTCGAGGAAAACAAGAAAG 57.265 39.130 18.41 0.00 0.00 2.62
1756 1832 3.560068 TCACTCGAGGAAAACAAGAAAGC 59.440 43.478 18.41 0.00 0.00 3.51
1757 1833 3.561725 CACTCGAGGAAAACAAGAAAGCT 59.438 43.478 18.41 0.00 0.00 3.74
1778 1871 1.315981 TTTGCCTTGTGTTGGTGCGA 61.316 50.000 0.00 0.00 0.00 5.10
1779 1872 1.723608 TTGCCTTGTGTTGGTGCGAG 61.724 55.000 0.00 0.00 0.00 5.03
1780 1873 2.639286 CCTTGTGTTGGTGCGAGC 59.361 61.111 0.00 0.00 0.00 5.03
1781 1874 2.186160 CCTTGTGTTGGTGCGAGCA 61.186 57.895 0.00 0.00 0.00 4.26
1782 1875 1.723608 CCTTGTGTTGGTGCGAGCAA 61.724 55.000 0.00 0.00 32.60 3.91
1783 1876 0.100325 CTTGTGTTGGTGCGAGCAAA 59.900 50.000 0.00 0.00 37.34 3.68
1784 1877 0.100325 TTGTGTTGGTGCGAGCAAAG 59.900 50.000 0.00 0.00 37.34 2.77
1785 1878 1.658409 GTGTTGGTGCGAGCAAAGC 60.658 57.895 0.00 0.00 37.34 3.51
1786 1879 2.427410 GTTGGTGCGAGCAAAGCG 60.427 61.111 0.00 0.00 37.34 4.68
1974 2070 0.034186 GGGCCATGTGATGTGAGGAA 60.034 55.000 4.39 0.00 0.00 3.36
2088 2206 3.223661 CAGTCAGTCAGGCTGGAAC 57.776 57.895 15.73 6.44 46.30 3.62
2089 2207 0.394192 CAGTCAGTCAGGCTGGAACA 59.606 55.000 15.73 0.00 46.30 3.18
2150 2278 1.927710 GCGACGTAACGGTCTTGTTCT 60.928 52.381 0.00 0.00 34.75 3.01
2338 2476 1.806542 CACGGCTGCTAACTGTCAAAT 59.193 47.619 0.00 0.00 0.00 2.32
2353 2494 4.793071 TGTCAAATTGGTACTTGCAATCG 58.207 39.130 0.00 0.00 0.00 3.34
2358 2499 2.021380 GTACTTGCAATCGCGGCG 59.979 61.111 17.70 17.70 42.97 6.46
2359 2500 2.433491 TACTTGCAATCGCGGCGT 60.433 55.556 22.90 6.97 42.97 5.68
2360 2501 2.735677 TACTTGCAATCGCGGCGTG 61.736 57.895 22.90 15.42 42.97 5.34
2361 2502 4.088762 CTTGCAATCGCGGCGTGT 62.089 61.111 22.90 9.71 42.97 4.49
2362 2503 4.382114 TTGCAATCGCGGCGTGTG 62.382 61.111 22.90 20.50 42.97 3.82
2364 2505 4.083600 GCAATCGCGGCGTGTGAA 62.084 61.111 22.90 2.20 41.23 3.18
2365 2506 2.553770 CAATCGCGGCGTGTGAAA 59.446 55.556 22.90 1.36 41.23 2.69
2366 2507 1.792057 CAATCGCGGCGTGTGAAAC 60.792 57.895 22.90 0.00 41.23 2.78
2397 2538 2.470821 CATGTTCTATTCGGGGTCGAC 58.529 52.381 7.13 7.13 45.92 4.20
2421 2565 0.940126 CCGAGCCAGTACGTACGTAT 59.060 55.000 29.05 14.32 32.82 3.06
2460 2604 2.421424 CTGTTATTTCCAGGCTGCTGAC 59.579 50.000 9.56 2.18 0.00 3.51
2462 2606 0.991146 TATTTCCAGGCTGCTGACCA 59.009 50.000 9.56 0.00 0.00 4.02
2490 2639 2.796032 GCAGCTGACTGGTTTTGTTCAC 60.796 50.000 20.43 0.00 44.63 3.18
2500 2649 2.857748 GGTTTTGTTCACTTCGCCAAAG 59.142 45.455 0.00 0.00 41.08 2.77
2538 2688 4.966965 TCTTCGTCAGATCAGTTCTACC 57.033 45.455 0.00 0.00 31.77 3.18
2539 2689 4.332828 TCTTCGTCAGATCAGTTCTACCA 58.667 43.478 0.00 0.00 31.77 3.25
2540 2690 4.396478 TCTTCGTCAGATCAGTTCTACCAG 59.604 45.833 0.00 0.00 31.77 4.00
2596 2746 1.142474 GTTTCACCCGTCGGTTACTG 58.858 55.000 11.06 0.00 42.04 2.74
2624 2774 9.447040 GTTTACTCCTATTTTGGAAATATTCGC 57.553 33.333 0.00 0.00 35.43 4.70
2683 2833 3.920231 AGCAATCTCCTGCATTAGTGA 57.080 42.857 0.00 0.00 45.18 3.41
2713 2863 3.190118 GTCTGTAACACGGCAGTACTACT 59.810 47.826 0.00 0.00 34.57 2.57
2714 2864 3.438087 TCTGTAACACGGCAGTACTACTC 59.562 47.826 0.00 0.00 34.57 2.59
2715 2865 3.148412 TGTAACACGGCAGTACTACTCA 58.852 45.455 0.00 0.00 0.00 3.41
2716 2866 3.569277 TGTAACACGGCAGTACTACTCAA 59.431 43.478 0.00 0.00 0.00 3.02
2717 2867 3.955650 AACACGGCAGTACTACTCAAT 57.044 42.857 0.00 0.00 0.00 2.57
2718 2868 3.955650 ACACGGCAGTACTACTCAATT 57.044 42.857 0.00 0.00 0.00 2.32
2719 2869 4.267349 ACACGGCAGTACTACTCAATTT 57.733 40.909 0.00 0.00 0.00 1.82
2720 2870 3.994392 ACACGGCAGTACTACTCAATTTG 59.006 43.478 0.00 0.00 0.00 2.32
2721 2871 3.994392 CACGGCAGTACTACTCAATTTGT 59.006 43.478 0.00 0.00 0.00 2.83
2722 2872 4.451096 CACGGCAGTACTACTCAATTTGTT 59.549 41.667 0.00 0.00 0.00 2.83
2723 2873 5.049680 CACGGCAGTACTACTCAATTTGTTT 60.050 40.000 0.00 0.00 0.00 2.83
2724 2874 5.049680 ACGGCAGTACTACTCAATTTGTTTG 60.050 40.000 0.00 0.00 36.61 2.93
2725 2875 5.154222 GGCAGTACTACTCAATTTGTTTGC 58.846 41.667 0.00 0.00 35.16 3.68
2726 2876 4.846137 GCAGTACTACTCAATTTGTTTGCG 59.154 41.667 0.00 0.00 35.16 4.85
2727 2877 4.846137 CAGTACTACTCAATTTGTTTGCGC 59.154 41.667 0.00 0.00 35.16 6.09
2728 2878 3.980646 ACTACTCAATTTGTTTGCGCA 57.019 38.095 5.66 5.66 35.16 6.09
2729 2879 3.888934 ACTACTCAATTTGTTTGCGCAG 58.111 40.909 11.31 0.00 35.16 5.18
2796 2963 4.397103 TCTGCATTTCAGCATACTCCAAAG 59.603 41.667 0.00 0.00 44.68 2.77
2797 2964 4.081406 TGCATTTCAGCATACTCCAAAGT 58.919 39.130 0.00 0.00 40.11 2.66
2798 2965 4.156556 TGCATTTCAGCATACTCCAAAGTC 59.843 41.667 0.00 0.00 40.11 3.01
2799 2966 4.439289 GCATTTCAGCATACTCCAAAGTCC 60.439 45.833 0.00 0.00 36.92 3.85
2800 2967 4.365514 TTTCAGCATACTCCAAAGTCCA 57.634 40.909 0.00 0.00 36.92 4.02
2801 2968 4.365514 TTCAGCATACTCCAAAGTCCAA 57.634 40.909 0.00 0.00 36.92 3.53
2802 2969 4.365514 TCAGCATACTCCAAAGTCCAAA 57.634 40.909 0.00 0.00 36.92 3.28
2927 3094 5.333645 CGATAAGACATGCTTAATCACCAGC 60.334 44.000 11.80 0.00 42.10 4.85
2928 3095 2.283298 AGACATGCTTAATCACCAGCG 58.717 47.619 0.00 0.00 39.04 5.18
2930 3097 1.019673 CATGCTTAATCACCAGCGCT 58.980 50.000 2.64 2.64 39.04 5.92
3017 3184 3.120782 CAGCATCTTTTCAAGCTTTTCGC 59.879 43.478 0.00 0.00 34.61 4.70
3081 3254 1.922570 TCCAAATCTCTAACGCGAGC 58.077 50.000 15.93 0.00 0.00 5.03
3400 3573 1.176527 CCATCAACCCTTCATTGCGT 58.823 50.000 0.00 0.00 0.00 5.24
3639 3859 2.160171 CAGGTGGGGTTGGAAGGGA 61.160 63.158 0.00 0.00 0.00 4.20
3640 3860 1.852626 AGGTGGGGTTGGAAGGGAG 60.853 63.158 0.00 0.00 0.00 4.30
3642 3862 1.850755 GTGGGGTTGGAAGGGAGGA 60.851 63.158 0.00 0.00 0.00 3.71
3643 3863 1.850755 TGGGGTTGGAAGGGAGGAC 60.851 63.158 0.00 0.00 0.00 3.85
3644 3864 2.669240 GGGTTGGAAGGGAGGACG 59.331 66.667 0.00 0.00 0.00 4.79
3645 3865 1.916777 GGGTTGGAAGGGAGGACGA 60.917 63.158 0.00 0.00 0.00 4.20
3653 3873 2.379972 GAAGGGAGGACGAGATGAGAA 58.620 52.381 0.00 0.00 0.00 2.87
3655 3875 1.036707 GGGAGGACGAGATGAGAAGG 58.963 60.000 0.00 0.00 0.00 3.46
3721 3941 0.655733 CAACTTGTCACGCGTCCTTT 59.344 50.000 9.86 0.00 0.00 3.11
3735 3955 4.433304 CGCGTCCTTTAATTTCGCATAAAG 59.567 41.667 0.00 0.00 45.77 1.85
3738 3958 6.357240 GCGTCCTTTAATTTCGCATAAAGATC 59.643 38.462 6.81 0.00 45.01 2.75
3739 3959 6.570058 CGTCCTTTAATTTCGCATAAAGATCG 59.430 38.462 6.81 7.05 40.10 3.69
3741 3961 6.540914 TCCTTTAATTTCGCATAAAGATCGGT 59.459 34.615 6.81 0.00 40.10 4.69
3742 3962 6.632834 CCTTTAATTTCGCATAAAGATCGGTG 59.367 38.462 6.81 0.00 40.10 4.94
3744 3964 2.971660 TTCGCATAAAGATCGGTGGA 57.028 45.000 0.00 0.00 0.00 4.02
3745 3965 2.509052 TCGCATAAAGATCGGTGGAG 57.491 50.000 0.00 0.00 0.00 3.86
3746 3966 1.068588 TCGCATAAAGATCGGTGGAGG 59.931 52.381 0.00 0.00 0.00 4.30
3747 3967 1.230324 GCATAAAGATCGGTGGAGGC 58.770 55.000 0.00 0.00 0.00 4.70
3748 3968 1.884235 CATAAAGATCGGTGGAGGCC 58.116 55.000 0.00 0.00 0.00 5.19
3749 3969 0.765510 ATAAAGATCGGTGGAGGCCC 59.234 55.000 0.00 0.00 0.00 5.80
3750 3970 0.326238 TAAAGATCGGTGGAGGCCCT 60.326 55.000 0.00 0.00 0.00 5.19
3780 4000 5.008217 TCGTTCGTTTCATCAGGAAAATTGT 59.992 36.000 0.00 0.00 46.53 2.71
3781 4001 5.685511 CGTTCGTTTCATCAGGAAAATTGTT 59.314 36.000 0.00 0.00 46.53 2.83
3784 4004 9.191995 GTTCGTTTCATCAGGAAAATTGTTAAT 57.808 29.630 0.00 0.00 46.53 1.40
3785 4005 9.757227 TTCGTTTCATCAGGAAAATTGTTAATT 57.243 25.926 0.00 0.00 46.53 1.40
3786 4006 9.757227 TCGTTTCATCAGGAAAATTGTTAATTT 57.243 25.926 0.00 0.00 46.53 1.82
3794 4014 9.367160 TCAGGAAAATTGTTAATTTCTTCTCCT 57.633 29.630 10.17 10.17 41.58 3.69
3795 4015 9.415544 CAGGAAAATTGTTAATTTCTTCTCCTG 57.584 33.333 20.10 20.10 45.76 3.86
3796 4016 8.090831 AGGAAAATTGTTAATTTCTTCTCCTGC 58.909 33.333 13.27 0.00 40.37 4.85
3797 4017 7.872483 GGAAAATTGTTAATTTCTTCTCCTGCA 59.128 33.333 0.53 0.00 40.05 4.41
3798 4018 9.260002 GAAAATTGTTAATTTCTTCTCCTGCAA 57.740 29.630 0.53 0.00 40.05 4.08
3799 4019 9.612066 AAAATTGTTAATTTCTTCTCCTGCAAA 57.388 25.926 0.53 0.00 40.05 3.68
3800 4020 9.612066 AAATTGTTAATTTCTTCTCCTGCAAAA 57.388 25.926 0.00 0.00 36.38 2.44
3801 4021 9.612066 AATTGTTAATTTCTTCTCCTGCAAAAA 57.388 25.926 0.00 0.00 0.00 1.94
3802 4022 8.647143 TTGTTAATTTCTTCTCCTGCAAAAAG 57.353 30.769 0.00 0.00 0.00 2.27
3803 4023 7.209475 TGTTAATTTCTTCTCCTGCAAAAAGG 58.791 34.615 0.00 0.00 38.84 3.11
3858 4078 0.520404 AGCTGCAGCAATCGACAAAG 59.480 50.000 38.24 0.00 45.16 2.77
3862 4082 1.911293 GCAGCAATCGACAAAGCGGA 61.911 55.000 0.00 0.00 0.00 5.54
4046 4266 4.519612 TTGGCCACAGCACCAGCA 62.520 61.111 3.88 0.00 45.49 4.41
4053 4273 4.641645 CAGCACCAGCACCCGGAA 62.642 66.667 0.73 0.00 45.49 4.30
4054 4274 4.335647 AGCACCAGCACCCGGAAG 62.336 66.667 0.73 0.00 45.49 3.46
4056 4276 4.641645 CACCAGCACCCGGAAGCA 62.642 66.667 18.31 0.00 0.00 3.91
4057 4277 4.335647 ACCAGCACCCGGAAGCAG 62.336 66.667 18.31 11.26 0.00 4.24
4128 4348 1.177401 CCAGGGCTTCTTTTAGGTGC 58.823 55.000 0.00 0.00 0.00 5.01
4129 4349 1.547675 CCAGGGCTTCTTTTAGGTGCA 60.548 52.381 0.00 0.00 0.00 4.57
4180 4400 0.698818 CCACTAAAGCACCCCCTCTT 59.301 55.000 0.00 0.00 0.00 2.85
4220 4440 0.108138 ATGAGAGGCCGTTACAGCAC 60.108 55.000 0.00 0.00 0.00 4.40
4239 4459 3.684788 GCACGTTTCCATCTCTGTAATGT 59.315 43.478 0.00 0.00 0.00 2.71
4271 4493 5.817296 CCAGACGACCTATGATGATTTTTCA 59.183 40.000 0.00 0.00 0.00 2.69
4279 4501 7.669427 ACCTATGATGATTTTTCACTTTTGCA 58.331 30.769 0.00 0.00 0.00 4.08
4280 4502 7.816031 ACCTATGATGATTTTTCACTTTTGCAG 59.184 33.333 0.00 0.00 0.00 4.41
4298 4520 3.753272 TGCAGGAGCTAACATGTTTTCTC 59.247 43.478 17.78 20.41 42.74 2.87
4387 4611 1.925888 GGGCATCCCTCCAGATTGT 59.074 57.895 0.00 0.00 41.34 2.71
4402 4626 5.541953 CAGATTGTCTGGAGATCATGGTA 57.458 43.478 0.00 0.00 40.71 3.25
4417 4641 2.574929 GTATGGGGCGTCGACACA 59.425 61.111 4.95 4.95 0.00 3.72
4488 4716 4.862371 AGGTAGAAGGGAGAGTTGTAGAG 58.138 47.826 0.00 0.00 0.00 2.43
4544 4772 3.709141 TGCCTATACTGTACATGCAAGGA 59.291 43.478 15.11 0.00 0.00 3.36
4573 4801 4.437239 CAGTAAGGTGTTGATGCTCCTAG 58.563 47.826 0.00 0.00 32.65 3.02
4620 4848 2.554142 GTTTTCGTTATAGGGGACGGG 58.446 52.381 0.00 0.00 39.59 5.28
4653 4881 1.954146 CCCGGGCAATATCGTCGTG 60.954 63.158 8.08 0.00 0.00 4.35
4668 4896 2.836733 CGTCGTGTTGTACATCGTACTC 59.163 50.000 0.00 0.00 0.00 2.59
4693 4921 8.531146 TCACCTTTTCTTTTCTCTTCAACAAAT 58.469 29.630 0.00 0.00 0.00 2.32
4734 4963 9.679661 ACTTTCTTTTCTCTTCTTTTCTCTTCT 57.320 29.630 0.00 0.00 0.00 2.85
4821 5051 7.609532 CCCTTGAACTGTCTCTAAAGAATGAAT 59.390 37.037 0.00 0.00 31.93 2.57
4822 5052 8.449397 CCTTGAACTGTCTCTAAAGAATGAATG 58.551 37.037 0.00 0.00 31.93 2.67
4823 5053 9.212641 CTTGAACTGTCTCTAAAGAATGAATGA 57.787 33.333 0.00 0.00 31.93 2.57
4825 5055 8.993121 TGAACTGTCTCTAAAGAATGAATGAAC 58.007 33.333 0.00 0.00 31.93 3.18
4826 5056 8.908786 AACTGTCTCTAAAGAATGAATGAACA 57.091 30.769 0.00 0.00 31.93 3.18
4834 5070 8.084073 TCTAAAGAATGAATGAACAAAAGGCAG 58.916 33.333 0.00 0.00 0.00 4.85
4961 5197 3.206150 CTTACAGGTGTGCTTGAACTGT 58.794 45.455 6.22 6.22 43.95 3.55
4963 5199 3.275617 ACAGGTGTGCTTGAACTGTAA 57.724 42.857 0.00 0.00 40.31 2.41
4964 5200 3.206150 ACAGGTGTGCTTGAACTGTAAG 58.794 45.455 0.00 0.00 40.31 2.34
4979 5215 4.287766 CTGTAAGTTAGGGTTTCTGCCT 57.712 45.455 0.00 0.00 0.00 4.75
4980 5216 4.254492 CTGTAAGTTAGGGTTTCTGCCTC 58.746 47.826 0.00 0.00 0.00 4.70
4981 5217 2.881111 AAGTTAGGGTTTCTGCCTCC 57.119 50.000 0.00 0.00 0.00 4.30
4982 5218 2.046280 AGTTAGGGTTTCTGCCTCCT 57.954 50.000 0.00 0.00 0.00 3.69
4983 5219 1.909986 AGTTAGGGTTTCTGCCTCCTC 59.090 52.381 0.00 0.00 0.00 3.71
4984 5220 1.065345 GTTAGGGTTTCTGCCTCCTCC 60.065 57.143 0.00 0.00 0.00 4.30
4985 5221 0.417841 TAGGGTTTCTGCCTCCTCCT 59.582 55.000 0.00 0.00 0.00 3.69
4986 5222 0.476611 AGGGTTTCTGCCTCCTCCTT 60.477 55.000 0.00 0.00 0.00 3.36
4987 5223 0.034960 GGGTTTCTGCCTCCTCCTTC 60.035 60.000 0.00 0.00 0.00 3.46
4988 5224 0.034960 GGTTTCTGCCTCCTCCTTCC 60.035 60.000 0.00 0.00 0.00 3.46
4989 5225 0.988063 GTTTCTGCCTCCTCCTTCCT 59.012 55.000 0.00 0.00 0.00 3.36
4990 5226 1.352687 GTTTCTGCCTCCTCCTTCCTT 59.647 52.381 0.00 0.00 0.00 3.36
4991 5227 1.280457 TTCTGCCTCCTCCTTCCTTC 58.720 55.000 0.00 0.00 0.00 3.46
4992 5228 0.117140 TCTGCCTCCTCCTTCCTTCA 59.883 55.000 0.00 0.00 0.00 3.02
4993 5229 0.251634 CTGCCTCCTCCTTCCTTCAC 59.748 60.000 0.00 0.00 0.00 3.18
4994 5230 0.473694 TGCCTCCTCCTTCCTTCACA 60.474 55.000 0.00 0.00 0.00 3.58
4995 5231 0.693049 GCCTCCTCCTTCCTTCACAA 59.307 55.000 0.00 0.00 0.00 3.33
4996 5232 1.073923 GCCTCCTCCTTCCTTCACAAA 59.926 52.381 0.00 0.00 0.00 2.83
4997 5233 2.489073 GCCTCCTCCTTCCTTCACAAAA 60.489 50.000 0.00 0.00 0.00 2.44
4998 5234 3.832527 CCTCCTCCTTCCTTCACAAAAA 58.167 45.455 0.00 0.00 0.00 1.94
5017 5253 2.881111 AAGTTAGGGTTTCTGCCTCC 57.119 50.000 0.00 0.00 0.00 4.30
5018 5254 0.992695 AGTTAGGGTTTCTGCCTCCC 59.007 55.000 0.00 0.00 41.36 4.30
5019 5255 0.392595 GTTAGGGTTTCTGCCTCCCG 60.393 60.000 0.00 0.00 45.27 5.14
5020 5256 2.193087 TTAGGGTTTCTGCCTCCCGC 62.193 60.000 0.00 0.00 45.27 6.13
5023 5259 4.699522 GTTTCTGCCTCCCGCCGT 62.700 66.667 0.00 0.00 36.24 5.68
5024 5260 4.388499 TTTCTGCCTCCCGCCGTC 62.388 66.667 0.00 0.00 36.24 4.79
5046 5282 3.775654 CCACAGGTCCGCCTCCTC 61.776 72.222 0.00 0.00 44.97 3.71
5047 5283 2.681778 CACAGGTCCGCCTCCTCT 60.682 66.667 0.00 0.00 44.97 3.69
5048 5284 2.363147 ACAGGTCCGCCTCCTCTC 60.363 66.667 0.00 0.00 44.97 3.20
5049 5285 3.151022 CAGGTCCGCCTCCTCTCC 61.151 72.222 0.00 0.00 44.97 3.71
5050 5286 4.824515 AGGTCCGCCTCCTCTCCG 62.825 72.222 0.00 0.00 42.67 4.63
5058 5294 4.787280 CTCCTCTCCGGTGGCCCT 62.787 72.222 0.00 0.00 0.00 5.19
5059 5295 3.352748 TCCTCTCCGGTGGCCCTA 61.353 66.667 0.00 0.00 0.00 3.53
5060 5296 2.840102 CCTCTCCGGTGGCCCTAG 60.840 72.222 0.00 0.00 0.00 3.02
5061 5297 2.840102 CTCTCCGGTGGCCCTAGG 60.840 72.222 0.06 0.06 0.00 3.02
5062 5298 4.475444 TCTCCGGTGGCCCTAGGG 62.475 72.222 24.89 24.89 38.57 3.53
5089 5325 4.812476 CGCGGTGGATCTCGGCAA 62.812 66.667 0.00 0.00 0.00 4.52
5090 5326 2.892425 GCGGTGGATCTCGGCAAG 60.892 66.667 12.88 0.00 0.00 4.01
5091 5327 2.202932 CGGTGGATCTCGGCAAGG 60.203 66.667 0.00 0.00 0.00 3.61
5092 5328 2.190578 GGTGGATCTCGGCAAGGG 59.809 66.667 0.00 0.00 0.00 3.95
5093 5329 2.514824 GTGGATCTCGGCAAGGGC 60.515 66.667 0.00 0.00 40.13 5.19
5117 5353 3.950869 GGAGGGCTCCGTTTTTAGT 57.049 52.632 0.00 0.00 40.36 2.24
5118 5354 1.735386 GGAGGGCTCCGTTTTTAGTC 58.265 55.000 0.00 0.00 40.36 2.59
5119 5355 1.356938 GAGGGCTCCGTTTTTAGTCG 58.643 55.000 0.00 0.00 0.00 4.18
5120 5356 0.683412 AGGGCTCCGTTTTTAGTCGT 59.317 50.000 0.00 0.00 0.00 4.34
5121 5357 1.071228 AGGGCTCCGTTTTTAGTCGTT 59.929 47.619 0.00 0.00 0.00 3.85
5122 5358 1.875514 GGGCTCCGTTTTTAGTCGTTT 59.124 47.619 0.00 0.00 0.00 3.60
5123 5359 2.096069 GGGCTCCGTTTTTAGTCGTTTC 60.096 50.000 0.00 0.00 0.00 2.78
5124 5360 2.804527 GGCTCCGTTTTTAGTCGTTTCT 59.195 45.455 0.00 0.00 0.00 2.52
5125 5361 3.249320 GGCTCCGTTTTTAGTCGTTTCTT 59.751 43.478 0.00 0.00 0.00 2.52
5126 5362 4.260907 GGCTCCGTTTTTAGTCGTTTCTTT 60.261 41.667 0.00 0.00 0.00 2.52
5127 5363 4.902448 GCTCCGTTTTTAGTCGTTTCTTTC 59.098 41.667 0.00 0.00 0.00 2.62
5128 5364 5.502869 GCTCCGTTTTTAGTCGTTTCTTTCA 60.503 40.000 0.00 0.00 0.00 2.69
5129 5365 6.039781 TCCGTTTTTAGTCGTTTCTTTCAG 57.960 37.500 0.00 0.00 0.00 3.02
5130 5366 5.581874 TCCGTTTTTAGTCGTTTCTTTCAGT 59.418 36.000 0.00 0.00 0.00 3.41
5131 5367 6.092533 TCCGTTTTTAGTCGTTTCTTTCAGTT 59.907 34.615 0.00 0.00 0.00 3.16
5132 5368 6.744082 CCGTTTTTAGTCGTTTCTTTCAGTTT 59.256 34.615 0.00 0.00 0.00 2.66
5133 5369 7.271868 CCGTTTTTAGTCGTTTCTTTCAGTTTT 59.728 33.333 0.00 0.00 0.00 2.43
5134 5370 8.093723 CGTTTTTAGTCGTTTCTTTCAGTTTTG 58.906 33.333 0.00 0.00 0.00 2.44
5135 5371 7.500807 TTTTAGTCGTTTCTTTCAGTTTTGC 57.499 32.000 0.00 0.00 0.00 3.68
5136 5372 4.965119 AGTCGTTTCTTTCAGTTTTGCT 57.035 36.364 0.00 0.00 0.00 3.91
5137 5373 7.542534 TTAGTCGTTTCTTTCAGTTTTGCTA 57.457 32.000 0.00 0.00 0.00 3.49
5138 5374 6.049263 AGTCGTTTCTTTCAGTTTTGCTAG 57.951 37.500 0.00 0.00 0.00 3.42
5139 5375 5.007724 AGTCGTTTCTTTCAGTTTTGCTAGG 59.992 40.000 0.00 0.00 0.00 3.02
5140 5376 4.274950 TCGTTTCTTTCAGTTTTGCTAGGG 59.725 41.667 0.00 0.00 0.00 3.53
5141 5377 4.036380 CGTTTCTTTCAGTTTTGCTAGGGT 59.964 41.667 0.00 0.00 0.00 4.34
5142 5378 5.449999 CGTTTCTTTCAGTTTTGCTAGGGTT 60.450 40.000 0.00 0.00 0.00 4.11
5143 5379 6.338146 GTTTCTTTCAGTTTTGCTAGGGTTT 58.662 36.000 0.00 0.00 0.00 3.27
5144 5380 5.514274 TCTTTCAGTTTTGCTAGGGTTTG 57.486 39.130 0.00 0.00 0.00 2.93
5145 5381 4.953579 TCTTTCAGTTTTGCTAGGGTTTGT 59.046 37.500 0.00 0.00 0.00 2.83
5146 5382 4.647424 TTCAGTTTTGCTAGGGTTTGTG 57.353 40.909 0.00 0.00 0.00 3.33
5147 5383 3.626930 TCAGTTTTGCTAGGGTTTGTGT 58.373 40.909 0.00 0.00 0.00 3.72
5148 5384 3.630312 TCAGTTTTGCTAGGGTTTGTGTC 59.370 43.478 0.00 0.00 0.00 3.67
5149 5385 2.956333 AGTTTTGCTAGGGTTTGTGTCC 59.044 45.455 0.00 0.00 0.00 4.02
5150 5386 2.956333 GTTTTGCTAGGGTTTGTGTCCT 59.044 45.455 0.00 0.00 37.18 3.85
5151 5387 2.270352 TTGCTAGGGTTTGTGTCCTG 57.730 50.000 0.00 0.00 34.75 3.86
5152 5388 0.250727 TGCTAGGGTTTGTGTCCTGC 60.251 55.000 0.00 0.00 34.75 4.85
5153 5389 0.036875 GCTAGGGTTTGTGTCCTGCT 59.963 55.000 0.00 0.00 34.75 4.24
5154 5390 1.545651 GCTAGGGTTTGTGTCCTGCTT 60.546 52.381 0.00 0.00 34.75 3.91
5155 5391 2.290071 GCTAGGGTTTGTGTCCTGCTTA 60.290 50.000 0.00 0.00 34.75 3.09
5156 5392 2.568623 AGGGTTTGTGTCCTGCTTAG 57.431 50.000 0.00 0.00 31.11 2.18
5157 5393 2.054799 AGGGTTTGTGTCCTGCTTAGA 58.945 47.619 0.00 0.00 31.11 2.10
5158 5394 2.441750 AGGGTTTGTGTCCTGCTTAGAA 59.558 45.455 0.00 0.00 31.11 2.10
5159 5395 3.117663 AGGGTTTGTGTCCTGCTTAGAAA 60.118 43.478 0.00 0.00 31.11 2.52
5160 5396 3.253432 GGGTTTGTGTCCTGCTTAGAAAG 59.747 47.826 0.00 0.00 0.00 2.62
5161 5397 4.134563 GGTTTGTGTCCTGCTTAGAAAGA 58.865 43.478 0.00 0.00 0.00 2.52
5162 5398 4.023963 GGTTTGTGTCCTGCTTAGAAAGAC 60.024 45.833 0.00 0.00 0.00 3.01
5163 5399 3.026630 TGTGTCCTGCTTAGAAAGACG 57.973 47.619 0.00 0.00 0.00 4.18
5164 5400 2.626266 TGTGTCCTGCTTAGAAAGACGA 59.374 45.455 0.00 0.00 0.00 4.20
5165 5401 3.246619 GTGTCCTGCTTAGAAAGACGAG 58.753 50.000 0.00 0.00 0.00 4.18
5166 5402 3.057456 GTGTCCTGCTTAGAAAGACGAGA 60.057 47.826 0.00 0.00 0.00 4.04
5167 5403 3.057456 TGTCCTGCTTAGAAAGACGAGAC 60.057 47.826 0.00 0.00 0.00 3.36
5168 5404 2.161808 TCCTGCTTAGAAAGACGAGACG 59.838 50.000 0.00 0.00 0.00 4.18
5169 5405 2.520979 CTGCTTAGAAAGACGAGACGG 58.479 52.381 0.00 0.00 0.00 4.79
5170 5406 1.270068 GCTTAGAAAGACGAGACGGC 58.730 55.000 0.00 0.00 33.59 5.68
5171 5407 1.536149 CTTAGAAAGACGAGACGGCG 58.464 55.000 4.80 4.80 41.28 6.46
5172 5408 0.169672 TTAGAAAGACGAGACGGCGG 59.830 55.000 13.24 0.00 41.28 6.13
5173 5409 2.262471 TAGAAAGACGAGACGGCGGC 62.262 60.000 13.24 8.92 41.28 6.53
5187 5423 3.854669 CGGCGGCTCCCTGAAGAT 61.855 66.667 7.61 0.00 0.00 2.40
5188 5424 2.203126 GGCGGCTCCCTGAAGATG 60.203 66.667 0.00 0.00 0.00 2.90
5189 5425 2.203126 GCGGCTCCCTGAAGATGG 60.203 66.667 0.00 0.00 0.00 3.51
5190 5426 2.735772 GCGGCTCCCTGAAGATGGA 61.736 63.158 0.00 0.00 0.00 3.41
5191 5427 1.907739 CGGCTCCCTGAAGATGGAA 59.092 57.895 0.00 0.00 0.00 3.53
5192 5428 0.471617 CGGCTCCCTGAAGATGGAAT 59.528 55.000 0.00 0.00 0.00 3.01
5193 5429 1.694150 CGGCTCCCTGAAGATGGAATA 59.306 52.381 0.00 0.00 0.00 1.75
5194 5430 2.104792 CGGCTCCCTGAAGATGGAATAA 59.895 50.000 0.00 0.00 0.00 1.40
5195 5431 3.433598 CGGCTCCCTGAAGATGGAATAAA 60.434 47.826 0.00 0.00 0.00 1.40
5196 5432 4.140536 GGCTCCCTGAAGATGGAATAAAG 58.859 47.826 0.00 0.00 0.00 1.85
5197 5433 4.140536 GCTCCCTGAAGATGGAATAAAGG 58.859 47.826 0.00 0.00 0.00 3.11
5198 5434 4.385754 GCTCCCTGAAGATGGAATAAAGGT 60.386 45.833 0.00 0.00 0.00 3.50
5199 5435 5.372373 CTCCCTGAAGATGGAATAAAGGTC 58.628 45.833 0.00 0.00 0.00 3.85
5200 5436 5.039645 TCCCTGAAGATGGAATAAAGGTCT 58.960 41.667 0.00 0.00 0.00 3.85
5201 5437 5.131142 TCCCTGAAGATGGAATAAAGGTCTC 59.869 44.000 0.00 0.00 0.00 3.36
5202 5438 5.372373 CCTGAAGATGGAATAAAGGTCTCC 58.628 45.833 0.00 0.00 0.00 3.71
5203 5439 5.372373 CTGAAGATGGAATAAAGGTCTCCC 58.628 45.833 0.00 0.00 0.00 4.30
5204 5440 4.166144 TGAAGATGGAATAAAGGTCTCCCC 59.834 45.833 0.00 0.00 0.00 4.81
5205 5441 2.706190 AGATGGAATAAAGGTCTCCCCG 59.294 50.000 0.00 0.00 38.74 5.73
5206 5442 0.544697 TGGAATAAAGGTCTCCCCGC 59.455 55.000 0.00 0.00 38.74 6.13
5207 5443 0.837940 GGAATAAAGGTCTCCCCGCT 59.162 55.000 0.00 0.00 38.74 5.52
5208 5444 1.212195 GGAATAAAGGTCTCCCCGCTT 59.788 52.381 0.00 0.00 38.74 4.68
5209 5445 2.436911 GGAATAAAGGTCTCCCCGCTTA 59.563 50.000 0.00 0.00 38.74 3.09
5210 5446 3.494573 GGAATAAAGGTCTCCCCGCTTAG 60.495 52.174 0.00 0.00 38.74 2.18
5211 5447 2.242882 TAAAGGTCTCCCCGCTTAGT 57.757 50.000 0.00 0.00 38.74 2.24
5212 5448 0.903236 AAAGGTCTCCCCGCTTAGTC 59.097 55.000 0.00 0.00 38.74 2.59
5213 5449 0.976590 AAGGTCTCCCCGCTTAGTCC 60.977 60.000 0.00 0.00 38.74 3.85
5214 5450 2.433146 GGTCTCCCCGCTTAGTCCC 61.433 68.421 0.00 0.00 0.00 4.46
5215 5451 2.042230 TCTCCCCGCTTAGTCCCC 60.042 66.667 0.00 0.00 0.00 4.81
5216 5452 3.537874 CTCCCCGCTTAGTCCCCG 61.538 72.222 0.00 0.00 0.00 5.73
5217 5453 4.387343 TCCCCGCTTAGTCCCCGT 62.387 66.667 0.00 0.00 0.00 5.28
5218 5454 3.396570 CCCCGCTTAGTCCCCGTT 61.397 66.667 0.00 0.00 0.00 4.44
5219 5455 2.186125 CCCGCTTAGTCCCCGTTC 59.814 66.667 0.00 0.00 0.00 3.95
5220 5456 2.186125 CCGCTTAGTCCCCGTTCC 59.814 66.667 0.00 0.00 0.00 3.62
5221 5457 2.202703 CGCTTAGTCCCCGTTCCG 60.203 66.667 0.00 0.00 0.00 4.30
5223 5459 2.186125 CTTAGTCCCCGTTCCGGC 59.814 66.667 0.00 0.00 46.86 6.13
5224 5460 3.711541 CTTAGTCCCCGTTCCGGCG 62.712 68.421 0.00 0.00 46.86 6.46
5255 5491 4.920112 CGTTGGTGGGCGTGTGGA 62.920 66.667 0.00 0.00 0.00 4.02
5256 5492 2.978010 GTTGGTGGGCGTGTGGAG 60.978 66.667 0.00 0.00 0.00 3.86
5257 5493 4.263572 TTGGTGGGCGTGTGGAGG 62.264 66.667 0.00 0.00 0.00 4.30
5260 5496 4.250305 GTGGGCGTGTGGAGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
5261 5497 4.248842 TGGGCGTGTGGAGGTGTG 62.249 66.667 0.00 0.00 0.00 3.82
5262 5498 4.250305 GGGCGTGTGGAGGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
5263 5499 2.665185 GGCGTGTGGAGGTGTGTC 60.665 66.667 0.00 0.00 0.00 3.67
5264 5500 2.421739 GCGTGTGGAGGTGTGTCT 59.578 61.111 0.00 0.00 0.00 3.41
5265 5501 1.664965 GCGTGTGGAGGTGTGTCTC 60.665 63.158 0.00 0.00 0.00 3.36
5270 5506 2.657237 GGAGGTGTGTCTCCGGTG 59.343 66.667 0.00 0.00 43.19 4.94
5271 5507 2.657237 GAGGTGTGTCTCCGGTGG 59.343 66.667 0.00 0.00 0.00 4.61
5272 5508 1.906824 GAGGTGTGTCTCCGGTGGA 60.907 63.158 0.00 0.00 0.00 4.02
5273 5509 1.229209 AGGTGTGTCTCCGGTGGAT 60.229 57.895 0.00 0.00 0.00 3.41
5274 5510 1.218316 GGTGTGTCTCCGGTGGATC 59.782 63.158 0.00 0.63 0.00 3.36
5275 5511 1.258445 GGTGTGTCTCCGGTGGATCT 61.258 60.000 0.00 0.00 0.00 2.75
5276 5512 1.471119 GTGTGTCTCCGGTGGATCTA 58.529 55.000 0.00 0.00 0.00 1.98
5277 5513 2.032620 GTGTGTCTCCGGTGGATCTAT 58.967 52.381 0.00 0.00 0.00 1.98
5278 5514 2.034812 GTGTGTCTCCGGTGGATCTATC 59.965 54.545 0.00 0.00 0.00 2.08
5279 5515 2.091830 TGTGTCTCCGGTGGATCTATCT 60.092 50.000 0.00 0.00 0.00 1.98
5280 5516 2.959707 GTGTCTCCGGTGGATCTATCTT 59.040 50.000 0.00 0.00 0.00 2.40
5281 5517 3.385111 GTGTCTCCGGTGGATCTATCTTT 59.615 47.826 0.00 0.00 0.00 2.52
5282 5518 3.384789 TGTCTCCGGTGGATCTATCTTTG 59.615 47.826 0.00 0.00 0.00 2.77
5283 5519 2.965831 TCTCCGGTGGATCTATCTTTGG 59.034 50.000 0.00 0.00 0.00 3.28
5284 5520 2.700897 CTCCGGTGGATCTATCTTTGGT 59.299 50.000 0.00 0.00 0.00 3.67
5285 5521 2.434336 TCCGGTGGATCTATCTTTGGTG 59.566 50.000 0.00 0.00 0.00 4.17
5286 5522 2.485479 CCGGTGGATCTATCTTTGGTGG 60.485 54.545 0.00 0.00 0.00 4.61
5287 5523 2.434336 CGGTGGATCTATCTTTGGTGGA 59.566 50.000 0.00 0.00 0.00 4.02
5288 5524 3.071602 CGGTGGATCTATCTTTGGTGGAT 59.928 47.826 0.00 0.00 0.00 3.41
5289 5525 4.444876 CGGTGGATCTATCTTTGGTGGATT 60.445 45.833 0.00 0.00 0.00 3.01
5290 5526 5.449553 GGTGGATCTATCTTTGGTGGATTT 58.550 41.667 0.00 0.00 0.00 2.17
5291 5527 5.300286 GGTGGATCTATCTTTGGTGGATTTG 59.700 44.000 0.00 0.00 0.00 2.32
5292 5528 4.889409 TGGATCTATCTTTGGTGGATTTGC 59.111 41.667 0.00 0.00 0.00 3.68
5293 5529 5.136105 GGATCTATCTTTGGTGGATTTGCT 58.864 41.667 0.00 0.00 0.00 3.91
5294 5530 5.240403 GGATCTATCTTTGGTGGATTTGCTC 59.760 44.000 0.00 0.00 0.00 4.26
5295 5531 4.191544 TCTATCTTTGGTGGATTTGCTCG 58.808 43.478 0.00 0.00 0.00 5.03
5296 5532 1.533625 TCTTTGGTGGATTTGCTCGG 58.466 50.000 0.00 0.00 0.00 4.63
5297 5533 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
5298 5534 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
5299 5535 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
5300 5536 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
5301 5537 1.134401 TGGTGGATTTGCTCGGATCTC 60.134 52.381 0.00 0.00 0.00 2.75
5302 5538 1.212616 GTGGATTTGCTCGGATCTCG 58.787 55.000 0.00 0.00 40.90 4.04
5303 5539 0.824109 TGGATTTGCTCGGATCTCGT 59.176 50.000 0.00 0.00 40.32 4.18
5304 5540 1.202417 TGGATTTGCTCGGATCTCGTC 60.202 52.381 0.00 0.00 40.32 4.20
5305 5541 1.124462 GATTTGCTCGGATCTCGTCG 58.876 55.000 0.00 0.00 40.32 5.12
5306 5542 0.456221 ATTTGCTCGGATCTCGTCGT 59.544 50.000 0.00 0.00 40.32 4.34
5307 5543 0.242825 TTTGCTCGGATCTCGTCGTT 59.757 50.000 0.00 0.00 40.32 3.85
5308 5544 0.456142 TTGCTCGGATCTCGTCGTTG 60.456 55.000 0.00 0.00 40.32 4.10
5309 5545 1.136984 GCTCGGATCTCGTCGTTGT 59.863 57.895 0.00 0.00 40.32 3.32
5310 5546 0.456312 GCTCGGATCTCGTCGTTGTT 60.456 55.000 0.00 0.00 40.32 2.83
5311 5547 1.536149 CTCGGATCTCGTCGTTGTTC 58.464 55.000 0.00 0.00 40.32 3.18
5312 5548 0.179207 TCGGATCTCGTCGTTGTTCG 60.179 55.000 0.00 0.00 40.32 3.95
5313 5549 0.453950 CGGATCTCGTCGTTGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
5314 5550 1.257539 GGATCTCGTCGTTGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
5315 5551 1.135746 GGATCTCGTCGTTGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
5316 5552 2.094894 GGATCTCGTCGTTGTTCGTCTA 59.905 50.000 0.00 0.00 40.80 2.59
5317 5553 2.584166 TCTCGTCGTTGTTCGTCTAC 57.416 50.000 0.00 0.00 40.80 2.59
5318 5554 1.136529 TCTCGTCGTTGTTCGTCTACG 60.137 52.381 0.00 0.00 44.05 3.51
5319 5555 0.581529 TCGTCGTTGTTCGTCTACGT 59.418 50.000 2.02 0.00 43.41 3.57
5320 5556 1.003972 TCGTCGTTGTTCGTCTACGTT 60.004 47.619 0.00 0.00 43.41 3.99
5321 5557 1.376856 CGTCGTTGTTCGTCTACGTTC 59.623 52.381 0.00 0.00 43.41 3.95
5322 5558 1.376856 GTCGTTGTTCGTCTACGTTCG 59.623 52.381 0.00 0.00 43.41 3.95
5323 5559 0.088530 CGTTGTTCGTCTACGTTCGC 59.911 55.000 0.00 0.00 39.58 4.70
5324 5560 3.420685 CGTTGTTCGTCTACGTTCGCG 62.421 57.143 0.00 0.00 39.58 5.87
5334 5570 2.427905 CGTTCGCGTGTCTTCGGA 60.428 61.111 5.77 0.00 35.57 4.55
5335 5571 1.800315 CGTTCGCGTGTCTTCGGAT 60.800 57.895 5.77 0.00 35.57 4.18
5336 5572 1.342082 CGTTCGCGTGTCTTCGGATT 61.342 55.000 5.77 0.00 35.57 3.01
5337 5573 0.093026 GTTCGCGTGTCTTCGGATTG 59.907 55.000 5.77 0.00 0.00 2.67
5338 5574 1.011968 TTCGCGTGTCTTCGGATTGG 61.012 55.000 5.77 0.00 0.00 3.16
5339 5575 1.445410 CGCGTGTCTTCGGATTGGA 60.445 57.895 0.00 0.00 0.00 3.53
5340 5576 0.806102 CGCGTGTCTTCGGATTGGAT 60.806 55.000 0.00 0.00 0.00 3.41
5341 5577 0.931005 GCGTGTCTTCGGATTGGATC 59.069 55.000 0.00 0.00 0.00 3.36
5342 5578 1.471676 GCGTGTCTTCGGATTGGATCT 60.472 52.381 0.00 0.00 0.00 2.75
5343 5579 2.893637 CGTGTCTTCGGATTGGATCTT 58.106 47.619 0.00 0.00 0.00 2.40
5344 5580 3.262420 CGTGTCTTCGGATTGGATCTTT 58.738 45.455 0.00 0.00 0.00 2.52
5345 5581 3.307242 CGTGTCTTCGGATTGGATCTTTC 59.693 47.826 0.00 0.00 0.00 2.62
5346 5582 4.508662 GTGTCTTCGGATTGGATCTTTCT 58.491 43.478 0.00 0.00 0.00 2.52
5347 5583 4.331168 GTGTCTTCGGATTGGATCTTTCTG 59.669 45.833 0.00 0.00 0.00 3.02
5348 5584 4.222810 TGTCTTCGGATTGGATCTTTCTGA 59.777 41.667 0.00 0.00 0.00 3.27
5349 5585 5.104776 TGTCTTCGGATTGGATCTTTCTGAT 60.105 40.000 0.00 0.00 38.27 2.90
5364 5600 9.737427 GATCTTTCTGATCTACGTTATTCTTCA 57.263 33.333 0.00 0.00 46.05 3.02
5366 5602 9.737427 TCTTTCTGATCTACGTTATTCTTCATC 57.263 33.333 0.00 0.00 0.00 2.92
5367 5603 9.743057 CTTTCTGATCTACGTTATTCTTCATCT 57.257 33.333 0.00 0.00 0.00 2.90
5368 5604 9.521503 TTTCTGATCTACGTTATTCTTCATCTG 57.478 33.333 0.00 0.00 0.00 2.90
5369 5605 7.142021 TCTGATCTACGTTATTCTTCATCTGC 58.858 38.462 0.00 0.00 0.00 4.26
5370 5606 5.915196 TGATCTACGTTATTCTTCATCTGCG 59.085 40.000 0.00 0.00 0.00 5.18
5371 5607 4.607955 TCTACGTTATTCTTCATCTGCGG 58.392 43.478 0.00 0.00 0.00 5.69
5372 5608 1.933853 ACGTTATTCTTCATCTGCGGC 59.066 47.619 0.00 0.00 0.00 6.53
5373 5609 1.071239 CGTTATTCTTCATCTGCGGCG 60.071 52.381 0.51 0.51 0.00 6.46
5374 5610 1.261619 GTTATTCTTCATCTGCGGCGG 59.738 52.381 9.78 1.35 0.00 6.13
5375 5611 0.464036 TATTCTTCATCTGCGGCGGT 59.536 50.000 9.78 0.00 0.00 5.68
5376 5612 0.392998 ATTCTTCATCTGCGGCGGTT 60.393 50.000 9.78 0.00 0.00 4.44
5377 5613 1.298157 TTCTTCATCTGCGGCGGTTG 61.298 55.000 9.78 12.61 0.00 3.77
5378 5614 3.386867 CTTCATCTGCGGCGGTTGC 62.387 63.158 9.78 0.00 41.71 4.17
5379 5615 3.899981 TTCATCTGCGGCGGTTGCT 62.900 57.895 9.78 0.00 42.25 3.91
5386 5622 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
5387 5623 2.594592 GGCGGTTGCTGTTCTGGT 60.595 61.111 0.00 0.00 42.25 4.00
5388 5624 2.639286 GCGGTTGCTGTTCTGGTG 59.361 61.111 0.00 0.00 38.39 4.17
5389 5625 2.639286 CGGTTGCTGTTCTGGTGC 59.361 61.111 0.00 0.00 0.00 5.01
5390 5626 2.186160 CGGTTGCTGTTCTGGTGCA 61.186 57.895 0.00 0.00 34.69 4.57
5391 5627 1.360192 GGTTGCTGTTCTGGTGCAC 59.640 57.895 8.80 8.80 36.37 4.57
5392 5628 1.103398 GGTTGCTGTTCTGGTGCACT 61.103 55.000 17.98 0.00 36.37 4.40
5393 5629 0.029834 GTTGCTGTTCTGGTGCACTG 59.970 55.000 17.98 10.30 36.37 3.66
5394 5630 1.102809 TTGCTGTTCTGGTGCACTGG 61.103 55.000 17.98 9.89 36.37 4.00
5395 5631 1.526917 GCTGTTCTGGTGCACTGGT 60.527 57.895 17.98 0.00 0.00 4.00
5396 5632 1.510480 GCTGTTCTGGTGCACTGGTC 61.510 60.000 17.98 0.00 0.00 4.02
5397 5633 0.886490 CTGTTCTGGTGCACTGGTCC 60.886 60.000 17.98 0.00 0.00 4.46
5398 5634 1.344953 TGTTCTGGTGCACTGGTCCT 61.345 55.000 17.98 0.00 0.00 3.85
5399 5635 0.685097 GTTCTGGTGCACTGGTCCTA 59.315 55.000 17.98 0.00 0.00 2.94
5400 5636 0.685097 TTCTGGTGCACTGGTCCTAC 59.315 55.000 17.98 0.00 0.00 3.18
5401 5637 1.079819 CTGGTGCACTGGTCCTACG 60.080 63.158 17.98 0.00 0.00 3.51
5402 5638 2.264794 GGTGCACTGGTCCTACGG 59.735 66.667 17.98 0.00 0.00 4.02
5403 5639 2.264794 GTGCACTGGTCCTACGGG 59.735 66.667 10.32 0.00 0.00 5.28
5404 5640 3.000819 TGCACTGGTCCTACGGGG 61.001 66.667 0.00 0.00 0.00 5.73
5405 5641 4.468689 GCACTGGTCCTACGGGGC 62.469 72.222 0.00 0.00 39.25 5.80
5411 5647 2.820261 GTCCTACGGGGCCTTAGC 59.180 66.667 0.84 0.00 38.76 3.09
5412 5648 2.062177 GTCCTACGGGGCCTTAGCA 61.062 63.158 0.84 0.00 42.56 3.49
5413 5649 2.062177 TCCTACGGGGCCTTAGCAC 61.062 63.158 0.84 0.00 43.97 4.40
5414 5650 2.106332 CTACGGGGCCTTAGCACG 59.894 66.667 0.84 0.00 46.55 5.34
5415 5651 2.362760 TACGGGGCCTTAGCACGA 60.363 61.111 0.84 0.00 46.55 4.35
5416 5652 2.624437 CTACGGGGCCTTAGCACGAC 62.624 65.000 0.84 0.00 46.55 4.34
5418 5654 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
5419 5655 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
5420 5656 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
5421 5657 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
5422 5658 0.669625 GGCCTTAGCACGACGACTTT 60.670 55.000 0.00 0.00 42.56 2.66
5423 5659 0.714439 GCCTTAGCACGACGACTTTC 59.286 55.000 0.00 0.00 39.53 2.62
5424 5660 1.347320 CCTTAGCACGACGACTTTCC 58.653 55.000 0.00 0.00 0.00 3.13
5425 5661 0.982673 CTTAGCACGACGACTTTCCG 59.017 55.000 0.00 0.00 0.00 4.30
5426 5662 0.592637 TTAGCACGACGACTTTCCGA 59.407 50.000 0.00 0.00 0.00 4.55
5427 5663 0.110056 TAGCACGACGACTTTCCGAC 60.110 55.000 0.00 0.00 0.00 4.79
5428 5664 1.371389 GCACGACGACTTTCCGACT 60.371 57.895 0.00 0.00 0.00 4.18
5429 5665 1.606350 GCACGACGACTTTCCGACTG 61.606 60.000 0.00 0.00 0.00 3.51
5430 5666 0.317603 CACGACGACTTTCCGACTGT 60.318 55.000 0.00 0.00 0.00 3.55
5431 5667 0.040603 ACGACGACTTTCCGACTGTC 60.041 55.000 0.00 0.00 0.00 3.51
5432 5668 0.237761 CGACGACTTTCCGACTGTCT 59.762 55.000 6.21 0.00 0.00 3.41
5433 5669 1.462283 CGACGACTTTCCGACTGTCTA 59.538 52.381 6.21 0.00 0.00 2.59
5434 5670 2.724228 CGACGACTTTCCGACTGTCTAC 60.724 54.545 6.21 0.00 0.00 2.59
5435 5671 2.483491 GACGACTTTCCGACTGTCTACT 59.517 50.000 6.21 0.00 0.00 2.57
5436 5672 3.668447 ACGACTTTCCGACTGTCTACTA 58.332 45.455 6.21 0.00 0.00 1.82
5437 5673 3.434984 ACGACTTTCCGACTGTCTACTAC 59.565 47.826 6.21 0.00 0.00 2.73
5438 5674 3.434641 CGACTTTCCGACTGTCTACTACA 59.565 47.826 6.21 0.00 36.42 2.74
5439 5675 4.083643 CGACTTTCCGACTGTCTACTACAA 60.084 45.833 6.21 0.00 37.74 2.41
5440 5676 5.118642 ACTTTCCGACTGTCTACTACAAC 57.881 43.478 6.21 0.00 37.74 3.32
5441 5677 4.581824 ACTTTCCGACTGTCTACTACAACA 59.418 41.667 6.21 0.00 37.74 3.33
5442 5678 5.068198 ACTTTCCGACTGTCTACTACAACAA 59.932 40.000 6.21 0.00 37.74 2.83
5443 5679 4.761235 TCCGACTGTCTACTACAACAAG 57.239 45.455 6.21 0.00 37.74 3.16
5444 5680 4.139786 TCCGACTGTCTACTACAACAAGT 58.860 43.478 6.21 0.00 37.74 3.16
5445 5681 4.581824 TCCGACTGTCTACTACAACAAGTT 59.418 41.667 6.21 0.00 37.74 2.66
5446 5682 4.680110 CCGACTGTCTACTACAACAAGTTG 59.320 45.833 11.16 11.16 45.58 3.16
5455 5691 2.404083 CAACAAGTTGTGCCCGACT 58.596 52.632 9.79 0.00 36.86 4.18
5456 5692 0.307760 CAACAAGTTGTGCCCGACTC 59.692 55.000 9.79 0.00 34.00 3.36
5457 5693 0.818040 AACAAGTTGTGCCCGACTCC 60.818 55.000 9.79 0.00 34.00 3.85
5458 5694 2.030562 AAGTTGTGCCCGACTCCG 59.969 61.111 0.00 0.00 34.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 0.179086 TCACGTCACTGTGTGCACAT 60.179 50.000 24.69 3.77 41.01 3.21
76 78 0.472471 ACCCCAAATCACGTCACTGT 59.528 50.000 0.00 0.00 0.00 3.55
82 84 1.074727 TCCAATGACCCCAAATCACGT 59.925 47.619 0.00 0.00 0.00 4.49
83 85 1.832883 TCCAATGACCCCAAATCACG 58.167 50.000 0.00 0.00 0.00 4.35
112 118 1.132462 TCTACCCAAACCACACCCCTA 60.132 52.381 0.00 0.00 0.00 3.53
117 123 3.482436 TCACATTCTACCCAAACCACAC 58.518 45.455 0.00 0.00 0.00 3.82
128 134 5.119931 TGTGCCAACAATTCACATTCTAC 57.880 39.130 0.00 0.00 35.99 2.59
134 140 2.871022 GCAAATGTGCCAACAATTCACA 59.129 40.909 0.00 0.00 45.68 3.58
177 183 2.399611 GAGCGCGGGTTCAAATCG 59.600 61.111 8.83 0.00 0.00 3.34
180 186 2.975799 GTGGAGCGCGGGTTCAAA 60.976 61.111 17.64 2.98 0.00 2.69
191 197 2.111384 TGGGAGAGTAAGATGTGGAGC 58.889 52.381 0.00 0.00 0.00 4.70
284 294 7.054124 AGATTATAGCCAAAACAGATCCGAAA 58.946 34.615 0.00 0.00 0.00 3.46
361 371 6.018425 CGCAACATCTATAAGCTCAAGTCATT 60.018 38.462 0.00 0.00 0.00 2.57
362 372 5.464722 CGCAACATCTATAAGCTCAAGTCAT 59.535 40.000 0.00 0.00 0.00 3.06
363 373 4.805719 CGCAACATCTATAAGCTCAAGTCA 59.194 41.667 0.00 0.00 0.00 3.41
364 374 4.210120 CCGCAACATCTATAAGCTCAAGTC 59.790 45.833 0.00 0.00 0.00 3.01
365 375 4.122776 CCGCAACATCTATAAGCTCAAGT 58.877 43.478 0.00 0.00 0.00 3.16
366 376 4.122776 ACCGCAACATCTATAAGCTCAAG 58.877 43.478 0.00 0.00 0.00 3.02
368 378 3.132111 TGACCGCAACATCTATAAGCTCA 59.868 43.478 0.00 0.00 0.00 4.26
393 403 9.895138 AATGCTGGCTATTTTTCTATTTTGAAT 57.105 25.926 0.00 0.00 0.00 2.57
401 411 9.627123 ACAATACTAATGCTGGCTATTTTTCTA 57.373 29.630 0.00 0.00 0.00 2.10
415 426 7.240674 TGACATGTTCGAAACAATACTAATGC 58.759 34.615 0.00 0.00 45.86 3.56
480 504 8.436778 TGGCCATATATGTTGGACCATATATAC 58.563 37.037 0.00 4.30 43.91 1.47
491 515 5.068198 GCATAGGAATGGCCATATATGTTGG 59.932 44.000 28.65 15.62 40.02 3.77
608 667 0.969894 GGATGGAGATCCGACGGATT 59.030 55.000 29.24 18.78 43.27 3.01
620 679 1.803334 TTTTCGACCGTTGGATGGAG 58.197 50.000 0.00 0.00 0.00 3.86
947 1015 1.064946 GCAGACGACGATCTCCCTG 59.935 63.158 0.00 0.30 0.00 4.45
1194 1265 1.956170 CACTTGCGGCGTCTTCACT 60.956 57.895 9.37 0.00 0.00 3.41
1356 1427 2.440599 GTGTGGGCCATCCTGGTT 59.559 61.111 10.70 0.00 40.46 3.67
1670 1741 1.287146 AGAATGCAAGGGCTGAGGAAT 59.713 47.619 0.00 0.00 41.91 3.01
1697 1768 3.842923 CTGCTGGGAGGACGCGAT 61.843 66.667 15.93 0.00 0.00 4.58
1755 1831 1.665169 CACCAACACAAGGCAAAAAGC 59.335 47.619 0.00 0.00 44.65 3.51
1756 1832 1.665169 GCACCAACACAAGGCAAAAAG 59.335 47.619 0.00 0.00 0.00 2.27
1757 1833 1.731720 GCACCAACACAAGGCAAAAA 58.268 45.000 0.00 0.00 0.00 1.94
1974 2070 3.586225 ATGGGGAGGGTGAGTGGCT 62.586 63.158 0.00 0.00 0.00 4.75
2087 2205 1.531423 CAATGGACTGCTTGCTCTGT 58.469 50.000 0.00 0.00 0.00 3.41
2088 2206 0.170561 GCAATGGACTGCTTGCTCTG 59.829 55.000 0.00 0.00 43.41 3.35
2089 2207 2.564471 GCAATGGACTGCTTGCTCT 58.436 52.632 0.00 0.00 43.41 4.09
2112 2240 3.062514 GTCGCCGTCGTAGTAAAATAACG 60.063 47.826 0.00 0.00 37.96 3.18
2150 2278 1.228831 CCATTGGCACCCAAGGACA 60.229 57.895 9.95 0.00 46.65 4.02
2338 2476 1.917782 GCCGCGATTGCAAGTACCAA 61.918 55.000 8.23 0.00 42.97 3.67
2353 2494 2.248431 GTCTGTTTCACACGCCGC 59.752 61.111 0.00 0.00 0.00 6.53
2358 2499 0.317020 GCAAGGCGTCTGTTTCACAC 60.317 55.000 0.00 0.00 0.00 3.82
2359 2500 0.746204 TGCAAGGCGTCTGTTTCACA 60.746 50.000 0.00 0.00 0.00 3.58
2360 2501 0.593128 ATGCAAGGCGTCTGTTTCAC 59.407 50.000 0.00 0.00 0.00 3.18
2361 2502 0.592637 CATGCAAGGCGTCTGTTTCA 59.407 50.000 0.00 0.00 0.00 2.69
2362 2503 0.593128 ACATGCAAGGCGTCTGTTTC 59.407 50.000 0.00 0.00 0.00 2.78
2363 2504 1.001378 GAACATGCAAGGCGTCTGTTT 60.001 47.619 0.00 0.00 31.83 2.83
2364 2505 0.593128 GAACATGCAAGGCGTCTGTT 59.407 50.000 0.00 0.00 33.41 3.16
2365 2506 0.250467 AGAACATGCAAGGCGTCTGT 60.250 50.000 0.00 0.00 0.00 3.41
2366 2507 1.725641 TAGAACATGCAAGGCGTCTG 58.274 50.000 0.00 0.00 0.00 3.51
2397 2538 0.659427 TACGTACTGGCTCGGATTCG 59.341 55.000 0.00 0.00 37.82 3.34
2421 2565 2.259204 CGAGAAACCCGTGCCGTA 59.741 61.111 0.00 0.00 0.00 4.02
2490 2639 2.185004 TCCTTTCCTCTTTGGCGAAG 57.815 50.000 8.26 8.26 36.67 3.79
2538 2688 6.808008 ATCAGAACCAACAAGACAATACTG 57.192 37.500 0.00 0.00 0.00 2.74
2539 2689 7.227156 AGAATCAGAACCAACAAGACAATACT 58.773 34.615 0.00 0.00 0.00 2.12
2540 2690 7.440523 AGAATCAGAACCAACAAGACAATAC 57.559 36.000 0.00 0.00 0.00 1.89
2624 2774 1.138337 GAGCGATGCTGCAGATACTG 58.862 55.000 20.43 3.34 39.88 2.74
2713 2863 3.371168 GAGAACTGCGCAAACAAATTGA 58.629 40.909 13.05 0.00 41.85 2.57
2714 2864 2.472488 GGAGAACTGCGCAAACAAATTG 59.528 45.455 13.05 0.00 42.21 2.32
2715 2865 2.742774 GGAGAACTGCGCAAACAAATT 58.257 42.857 13.05 0.00 0.00 1.82
2716 2866 1.334960 CGGAGAACTGCGCAAACAAAT 60.335 47.619 13.05 0.00 37.65 2.32
2717 2867 0.028770 CGGAGAACTGCGCAAACAAA 59.971 50.000 13.05 0.00 37.65 2.83
2718 2868 0.812014 TCGGAGAACTGCGCAAACAA 60.812 50.000 13.05 0.00 44.21 2.83
2719 2869 1.221466 CTCGGAGAACTGCGCAAACA 61.221 55.000 13.05 0.00 44.21 2.83
2720 2870 1.222115 ACTCGGAGAACTGCGCAAAC 61.222 55.000 13.05 5.75 44.21 2.93
2721 2871 0.315886 TACTCGGAGAACTGCGCAAA 59.684 50.000 13.05 0.00 44.21 3.68
2722 2872 0.530744 ATACTCGGAGAACTGCGCAA 59.469 50.000 13.05 0.00 44.21 4.85
2723 2873 1.385528 TATACTCGGAGAACTGCGCA 58.614 50.000 10.98 10.98 44.21 6.09
2724 2874 2.708386 ATATACTCGGAGAACTGCGC 57.292 50.000 12.86 0.00 44.21 6.09
2725 2875 7.282200 CGTATATATATACTCGGAGAACTGCG 58.718 42.308 23.98 9.28 38.10 5.18
2726 2876 7.307870 CCCGTATATATATACTCGGAGAACTGC 60.308 44.444 25.86 2.33 37.10 4.40
2727 2877 7.714377 ACCCGTATATATATACTCGGAGAACTG 59.286 40.741 26.97 15.73 37.10 3.16
2728 2878 7.800092 ACCCGTATATATATACTCGGAGAACT 58.200 38.462 26.97 12.49 37.10 3.01
2729 2879 8.983724 GTACCCGTATATATATACTCGGAGAAC 58.016 40.741 26.97 20.47 37.10 3.01
2796 2963 4.036734 TCAATTTCTGACAGCAGTTTGGAC 59.963 41.667 0.00 0.00 42.84 4.02
2797 2964 4.206375 TCAATTTCTGACAGCAGTTTGGA 58.794 39.130 0.00 0.00 42.84 3.53
2798 2965 4.572985 TCAATTTCTGACAGCAGTTTGG 57.427 40.909 0.00 0.00 42.84 3.28
2848 3015 6.837992 TGAAGCATTAATTCGTAGAAACACC 58.162 36.000 0.00 0.00 45.90 4.16
2927 3094 4.389077 GGCTTGCTAAATATGGTACTAGCG 59.611 45.833 5.42 0.00 39.72 4.26
2928 3095 5.179555 GTGGCTTGCTAAATATGGTACTAGC 59.820 44.000 3.30 3.30 37.79 3.42
2930 3097 6.494666 AGTGGCTTGCTAAATATGGTACTA 57.505 37.500 0.00 0.00 0.00 1.82
3081 3254 2.873170 TCGCGTAAAAGCAACAGATG 57.127 45.000 5.77 0.00 36.85 2.90
3275 3448 2.022902 CCGTGGACGTCGATCTCG 59.977 66.667 9.92 8.45 37.74 4.04
3400 3573 3.377485 GTGCTACTGCTACTGTACTGCTA 59.623 47.826 0.00 0.00 40.48 3.49
3403 3576 3.191581 AGTGTGCTACTGCTACTGTACTG 59.808 47.826 0.00 0.00 38.49 2.74
3405 3578 3.851976 AGTGTGCTACTGCTACTGTAC 57.148 47.619 0.00 0.00 38.49 2.90
3477 3668 1.740296 CTGTTAGTTCCGGGCGTGG 60.740 63.158 0.00 0.00 0.00 4.94
3605 3825 1.003118 ACCTGTACCACATGCACGAAT 59.997 47.619 0.00 0.00 0.00 3.34
3639 3859 0.032615 AGGCCTTCTCATCTCGTCCT 60.033 55.000 0.00 0.00 0.00 3.85
3640 3860 0.387565 GAGGCCTTCTCATCTCGTCC 59.612 60.000 6.77 0.00 42.02 4.79
3642 3862 0.394488 TCGAGGCCTTCTCATCTCGT 60.394 55.000 6.77 0.00 46.17 4.18
3644 3864 0.030101 CGTCGAGGCCTTCTCATCTC 59.970 60.000 6.77 0.00 42.55 2.75
3645 3865 2.010582 GCGTCGAGGCCTTCTCATCT 62.011 60.000 19.08 0.00 42.55 2.90
3721 3941 5.361427 TCCACCGATCTTTATGCGAAATTA 58.639 37.500 0.00 0.00 0.00 1.40
3735 3955 3.866582 CCAGGGCCTCCACCGATC 61.867 72.222 0.95 0.00 34.83 3.69
3747 3967 3.546714 AAACGAACGAGGGCCAGGG 62.547 63.158 6.18 0.00 0.00 4.45
3748 3968 2.032071 AAACGAACGAGGGCCAGG 59.968 61.111 6.18 0.00 0.00 4.45
3749 3969 0.673644 ATGAAACGAACGAGGGCCAG 60.674 55.000 6.18 0.96 0.00 4.85
3750 3970 0.672401 GATGAAACGAACGAGGGCCA 60.672 55.000 6.18 0.00 0.00 5.36
3758 3978 8.568732 TTAACAATTTTCCTGATGAAACGAAC 57.431 30.769 0.00 0.00 42.56 3.95
3780 4000 7.595819 TCCTTTTTGCAGGAGAAGAAATTAA 57.404 32.000 0.00 0.00 38.11 1.40
3781 4001 7.595819 TTCCTTTTTGCAGGAGAAGAAATTA 57.404 32.000 0.00 0.00 44.18 1.40
3784 4004 5.930837 TTTCCTTTTTGCAGGAGAAGAAA 57.069 34.783 0.00 0.00 44.18 2.52
3785 4005 5.930837 TTTTCCTTTTTGCAGGAGAAGAA 57.069 34.783 0.00 0.00 44.18 2.52
3786 4006 5.930837 TTTTTCCTTTTTGCAGGAGAAGA 57.069 34.783 0.00 0.00 44.18 2.87
3845 4065 1.009829 GATCCGCTTTGTCGATTGCT 58.990 50.000 0.00 0.00 0.00 3.91
4046 4266 1.913762 AGTACTGCTGCTTCCGGGT 60.914 57.895 0.00 0.00 0.00 5.28
4047 4267 1.448540 CAGTACTGCTGCTTCCGGG 60.449 63.158 10.54 0.00 38.52 5.73
4048 4268 4.192000 CAGTACTGCTGCTTCCGG 57.808 61.111 10.54 0.00 38.52 5.14
4069 4289 2.330216 AGCTATTAGCCAGGGGTACTG 58.670 52.381 12.05 0.00 43.77 2.74
4220 4440 5.812127 TCATCACATTACAGAGATGGAAACG 59.188 40.000 0.00 0.00 37.26 3.60
4239 4459 1.775385 TAGGTCGTCTGGCATCATCA 58.225 50.000 0.00 0.00 0.00 3.07
4271 4493 3.490348 ACATGTTAGCTCCTGCAAAAGT 58.510 40.909 0.00 0.00 42.74 2.66
4279 4501 4.273148 ACGAGAAAACATGTTAGCTCCT 57.727 40.909 23.88 15.47 0.00 3.69
4280 4502 5.810587 TGATACGAGAAAACATGTTAGCTCC 59.189 40.000 23.88 15.44 0.00 4.70
4298 4520 2.930040 AGTCCTGCGAAACAATGATACG 59.070 45.455 0.00 0.00 0.00 3.06
4387 4611 2.624495 CCCCATACCATGATCTCCAGA 58.376 52.381 0.00 0.00 0.00 3.86
4402 4626 2.358247 GTTGTGTCGACGCCCCAT 60.358 61.111 25.28 0.00 0.00 4.00
4427 4651 2.852075 TTGCGAGGAAGTGGGGGT 60.852 61.111 0.00 0.00 0.00 4.95
4429 4653 0.821711 TTTGTTGCGAGGAAGTGGGG 60.822 55.000 0.00 0.00 0.00 4.96
4430 4654 0.310854 GTTTGTTGCGAGGAAGTGGG 59.689 55.000 0.00 0.00 0.00 4.61
4433 4657 1.594331 GGAGTTTGTTGCGAGGAAGT 58.406 50.000 0.00 0.00 0.00 3.01
4488 4716 2.353605 GCTCTTGGATCCGATGATCTCC 60.354 54.545 7.39 0.00 45.62 3.71
4512 4740 2.208431 CAGTATAGGCAGCAGCTTGTC 58.792 52.381 0.00 0.00 41.70 3.18
4573 4801 7.930513 AAAAAGTTCTTATGTTTGCAGCTAC 57.069 32.000 0.00 0.00 0.00 3.58
4653 4881 5.924825 AGAAAAGGTGAGTACGATGTACAAC 59.075 40.000 0.00 0.00 0.00 3.32
4668 4896 8.707938 ATTTGTTGAAGAGAAAAGAAAAGGTG 57.292 30.769 0.00 0.00 0.00 4.00
4821 5051 2.360801 GCTTGTACCTGCCTTTTGTTCA 59.639 45.455 0.00 0.00 0.00 3.18
4822 5052 2.623416 AGCTTGTACCTGCCTTTTGTTC 59.377 45.455 3.94 0.00 0.00 3.18
4823 5053 2.362077 CAGCTTGTACCTGCCTTTTGTT 59.638 45.455 3.94 0.00 0.00 2.83
4825 5055 2.229792 TCAGCTTGTACCTGCCTTTTG 58.770 47.619 3.94 0.00 0.00 2.44
4826 5056 2.656947 TCAGCTTGTACCTGCCTTTT 57.343 45.000 3.94 0.00 0.00 2.27
4834 5070 8.286097 GCAAAAGATATATCTTCAGCTTGTACC 58.714 37.037 27.90 15.17 45.83 3.34
4908 5144 0.930310 CCGGTGTGCATCGTAATGAG 59.070 55.000 4.11 0.00 34.61 2.90
4936 5172 2.649190 TCAAGCACACCTGTAAGCAAA 58.351 42.857 0.00 0.00 0.00 3.68
4945 5181 3.560636 ACTTACAGTTCAAGCACACCT 57.439 42.857 0.00 0.00 0.00 4.00
4961 5197 3.518303 GAGGAGGCAGAAACCCTAACTTA 59.482 47.826 0.00 0.00 31.41 2.24
4963 5199 1.909986 GAGGAGGCAGAAACCCTAACT 59.090 52.381 0.00 0.00 31.41 2.24
4964 5200 1.065345 GGAGGAGGCAGAAACCCTAAC 60.065 57.143 0.00 0.00 31.41 2.34
4966 5202 0.417841 AGGAGGAGGCAGAAACCCTA 59.582 55.000 0.00 0.00 31.41 3.53
4967 5203 0.476611 AAGGAGGAGGCAGAAACCCT 60.477 55.000 0.00 0.00 34.77 4.34
4968 5204 0.034960 GAAGGAGGAGGCAGAAACCC 60.035 60.000 0.00 0.00 0.00 4.11
4969 5205 0.034960 GGAAGGAGGAGGCAGAAACC 60.035 60.000 0.00 0.00 0.00 3.27
4970 5206 0.988063 AGGAAGGAGGAGGCAGAAAC 59.012 55.000 0.00 0.00 0.00 2.78
4971 5207 1.630878 GAAGGAAGGAGGAGGCAGAAA 59.369 52.381 0.00 0.00 0.00 2.52
4972 5208 1.280457 GAAGGAAGGAGGAGGCAGAA 58.720 55.000 0.00 0.00 0.00 3.02
4973 5209 0.117140 TGAAGGAAGGAGGAGGCAGA 59.883 55.000 0.00 0.00 0.00 4.26
4974 5210 0.251634 GTGAAGGAAGGAGGAGGCAG 59.748 60.000 0.00 0.00 0.00 4.85
4975 5211 0.473694 TGTGAAGGAAGGAGGAGGCA 60.474 55.000 0.00 0.00 0.00 4.75
4976 5212 0.693049 TTGTGAAGGAAGGAGGAGGC 59.307 55.000 0.00 0.00 0.00 4.70
4977 5213 3.508845 TTTTGTGAAGGAAGGAGGAGG 57.491 47.619 0.00 0.00 0.00 4.30
4995 5231 3.895656 GGAGGCAGAAACCCTAACTTTTT 59.104 43.478 0.00 0.00 31.41 1.94
4996 5232 3.497332 GGAGGCAGAAACCCTAACTTTT 58.503 45.455 0.00 0.00 31.41 2.27
4997 5233 2.225041 GGGAGGCAGAAACCCTAACTTT 60.225 50.000 0.00 0.00 40.39 2.66
4998 5234 1.354705 GGGAGGCAGAAACCCTAACTT 59.645 52.381 0.00 0.00 40.39 2.66
4999 5235 0.992695 GGGAGGCAGAAACCCTAACT 59.007 55.000 0.00 0.00 40.39 2.24
5000 5236 0.392595 CGGGAGGCAGAAACCCTAAC 60.393 60.000 0.00 0.00 41.28 2.34
5001 5237 1.988015 CGGGAGGCAGAAACCCTAA 59.012 57.895 0.00 0.00 41.28 2.69
5002 5238 2.666098 GCGGGAGGCAGAAACCCTA 61.666 63.158 0.00 0.00 42.87 3.53
5003 5239 4.035102 GCGGGAGGCAGAAACCCT 62.035 66.667 0.00 0.00 42.87 4.34
5041 5277 3.375443 TAGGGCCACCGGAGAGGAG 62.375 68.421 9.46 0.00 45.00 3.69
5042 5278 3.352748 TAGGGCCACCGGAGAGGA 61.353 66.667 9.46 0.00 45.00 3.71
5044 5280 2.840102 CCTAGGGCCACCGGAGAG 60.840 72.222 9.46 0.00 43.47 3.20
5045 5281 4.475444 CCCTAGGGCCACCGGAGA 62.475 72.222 16.90 0.00 43.47 3.71
5072 5308 4.812476 TTGCCGAGATCCACCGCG 62.812 66.667 0.00 0.00 0.00 6.46
5073 5309 2.892425 CTTGCCGAGATCCACCGC 60.892 66.667 0.00 0.00 0.00 5.68
5074 5310 2.202932 CCTTGCCGAGATCCACCG 60.203 66.667 0.00 0.00 0.00 4.94
5075 5311 2.190578 CCCTTGCCGAGATCCACC 59.809 66.667 0.00 0.00 0.00 4.61
5076 5312 2.514824 GCCCTTGCCGAGATCCAC 60.515 66.667 0.00 0.00 0.00 4.02
5098 5334 0.327259 ACTAAAAACGGAGCCCTCCC 59.673 55.000 8.68 0.00 46.96 4.30
5099 5335 1.735386 GACTAAAAACGGAGCCCTCC 58.265 55.000 4.19 4.19 46.18 4.30
5100 5336 1.337541 ACGACTAAAAACGGAGCCCTC 60.338 52.381 0.00 0.00 0.00 4.30
5101 5337 0.683412 ACGACTAAAAACGGAGCCCT 59.317 50.000 0.00 0.00 0.00 5.19
5102 5338 1.516161 AACGACTAAAAACGGAGCCC 58.484 50.000 0.00 0.00 0.00 5.19
5103 5339 2.804527 AGAAACGACTAAAAACGGAGCC 59.195 45.455 0.00 0.00 0.00 4.70
5104 5340 4.463515 AAGAAACGACTAAAAACGGAGC 57.536 40.909 0.00 0.00 0.00 4.70
5105 5341 6.039781 TGAAAGAAACGACTAAAAACGGAG 57.960 37.500 0.00 0.00 0.00 4.63
5106 5342 5.581874 ACTGAAAGAAACGACTAAAAACGGA 59.418 36.000 0.00 0.00 37.43 4.69
5107 5343 5.803118 ACTGAAAGAAACGACTAAAAACGG 58.197 37.500 0.00 0.00 37.43 4.44
5108 5344 7.715264 AAACTGAAAGAAACGACTAAAAACG 57.285 32.000 0.00 0.00 37.43 3.60
5109 5345 7.891220 GCAAAACTGAAAGAAACGACTAAAAAC 59.109 33.333 0.00 0.00 37.43 2.43
5110 5346 7.810759 AGCAAAACTGAAAGAAACGACTAAAAA 59.189 29.630 0.00 0.00 37.43 1.94
5111 5347 7.309920 AGCAAAACTGAAAGAAACGACTAAAA 58.690 30.769 0.00 0.00 37.43 1.52
5112 5348 6.848451 AGCAAAACTGAAAGAAACGACTAAA 58.152 32.000 0.00 0.00 37.43 1.85
5113 5349 6.431198 AGCAAAACTGAAAGAAACGACTAA 57.569 33.333 0.00 0.00 37.43 2.24
5114 5350 6.202188 CCTAGCAAAACTGAAAGAAACGACTA 59.798 38.462 0.00 0.00 37.43 2.59
5115 5351 4.965119 AGCAAAACTGAAAGAAACGACT 57.035 36.364 0.00 0.00 37.43 4.18
5116 5352 5.205565 CCTAGCAAAACTGAAAGAAACGAC 58.794 41.667 0.00 0.00 37.43 4.34
5117 5353 4.274950 CCCTAGCAAAACTGAAAGAAACGA 59.725 41.667 0.00 0.00 37.43 3.85
5118 5354 4.036380 ACCCTAGCAAAACTGAAAGAAACG 59.964 41.667 0.00 0.00 37.43 3.60
5119 5355 5.515797 ACCCTAGCAAAACTGAAAGAAAC 57.484 39.130 0.00 0.00 37.43 2.78
5120 5356 6.071051 ACAAACCCTAGCAAAACTGAAAGAAA 60.071 34.615 0.00 0.00 37.43 2.52
5121 5357 5.420739 ACAAACCCTAGCAAAACTGAAAGAA 59.579 36.000 0.00 0.00 37.43 2.52
5122 5358 4.953579 ACAAACCCTAGCAAAACTGAAAGA 59.046 37.500 0.00 0.00 37.43 2.52
5123 5359 5.043248 CACAAACCCTAGCAAAACTGAAAG 58.957 41.667 0.00 0.00 42.29 2.62
5124 5360 4.464597 ACACAAACCCTAGCAAAACTGAAA 59.535 37.500 0.00 0.00 0.00 2.69
5125 5361 4.020543 ACACAAACCCTAGCAAAACTGAA 58.979 39.130 0.00 0.00 0.00 3.02
5126 5362 3.626930 ACACAAACCCTAGCAAAACTGA 58.373 40.909 0.00 0.00 0.00 3.41
5127 5363 3.243401 GGACACAAACCCTAGCAAAACTG 60.243 47.826 0.00 0.00 0.00 3.16
5128 5364 2.956333 GGACACAAACCCTAGCAAAACT 59.044 45.455 0.00 0.00 0.00 2.66
5129 5365 2.956333 AGGACACAAACCCTAGCAAAAC 59.044 45.455 0.00 0.00 0.00 2.43
5130 5366 2.955660 CAGGACACAAACCCTAGCAAAA 59.044 45.455 0.00 0.00 0.00 2.44
5131 5367 2.582052 CAGGACACAAACCCTAGCAAA 58.418 47.619 0.00 0.00 0.00 3.68
5132 5368 1.817740 GCAGGACACAAACCCTAGCAA 60.818 52.381 0.00 0.00 31.50 3.91
5133 5369 0.250727 GCAGGACACAAACCCTAGCA 60.251 55.000 0.00 0.00 31.50 3.49
5134 5370 0.036875 AGCAGGACACAAACCCTAGC 59.963 55.000 0.00 0.00 0.00 3.42
5135 5371 2.568623 AAGCAGGACACAAACCCTAG 57.431 50.000 0.00 0.00 0.00 3.02
5136 5372 3.244582 TCTAAGCAGGACACAAACCCTA 58.755 45.455 0.00 0.00 0.00 3.53
5137 5373 2.054799 TCTAAGCAGGACACAAACCCT 58.945 47.619 0.00 0.00 0.00 4.34
5138 5374 2.561478 TCTAAGCAGGACACAAACCC 57.439 50.000 0.00 0.00 0.00 4.11
5139 5375 4.023963 GTCTTTCTAAGCAGGACACAAACC 60.024 45.833 0.00 0.00 0.00 3.27
5140 5376 4.318831 CGTCTTTCTAAGCAGGACACAAAC 60.319 45.833 0.00 0.00 0.00 2.93
5141 5377 3.807622 CGTCTTTCTAAGCAGGACACAAA 59.192 43.478 0.00 0.00 0.00 2.83
5142 5378 3.069016 TCGTCTTTCTAAGCAGGACACAA 59.931 43.478 0.00 0.00 0.00 3.33
5143 5379 2.626266 TCGTCTTTCTAAGCAGGACACA 59.374 45.455 0.00 0.00 0.00 3.72
5144 5380 3.057456 TCTCGTCTTTCTAAGCAGGACAC 60.057 47.826 0.00 0.00 0.00 3.67
5145 5381 3.057456 GTCTCGTCTTTCTAAGCAGGACA 60.057 47.826 0.00 0.00 0.00 4.02
5146 5382 3.503891 GTCTCGTCTTTCTAAGCAGGAC 58.496 50.000 0.00 0.00 0.00 3.85
5147 5383 2.161808 CGTCTCGTCTTTCTAAGCAGGA 59.838 50.000 0.00 0.00 0.00 3.86
5148 5384 2.520979 CGTCTCGTCTTTCTAAGCAGG 58.479 52.381 0.00 0.00 0.00 4.85
5149 5385 2.520979 CCGTCTCGTCTTTCTAAGCAG 58.479 52.381 0.00 0.00 0.00 4.24
5150 5386 1.402456 GCCGTCTCGTCTTTCTAAGCA 60.402 52.381 0.00 0.00 0.00 3.91
5151 5387 1.270068 GCCGTCTCGTCTTTCTAAGC 58.730 55.000 0.00 0.00 0.00 3.09
5152 5388 1.536149 CGCCGTCTCGTCTTTCTAAG 58.464 55.000 0.00 0.00 0.00 2.18
5153 5389 0.169672 CCGCCGTCTCGTCTTTCTAA 59.830 55.000 0.00 0.00 0.00 2.10
5154 5390 1.798735 CCGCCGTCTCGTCTTTCTA 59.201 57.895 0.00 0.00 0.00 2.10
5155 5391 2.567049 CCGCCGTCTCGTCTTTCT 59.433 61.111 0.00 0.00 0.00 2.52
5156 5392 3.179939 GCCGCCGTCTCGTCTTTC 61.180 66.667 0.00 0.00 0.00 2.62
5170 5406 3.854669 ATCTTCAGGGAGCCGCCG 61.855 66.667 0.00 0.00 37.63 6.46
5171 5407 2.203126 CATCTTCAGGGAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
5172 5408 2.203126 CCATCTTCAGGGAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
5173 5409 0.471617 ATTCCATCTTCAGGGAGCCG 59.528 55.000 0.00 0.00 34.02 5.52
5174 5410 3.864789 TTATTCCATCTTCAGGGAGCC 57.135 47.619 0.00 0.00 34.02 4.70
5175 5411 4.140536 CCTTTATTCCATCTTCAGGGAGC 58.859 47.826 0.00 0.00 34.02 4.70
5176 5412 5.131809 AGACCTTTATTCCATCTTCAGGGAG 59.868 44.000 0.00 0.00 34.02 4.30
5177 5413 5.039645 AGACCTTTATTCCATCTTCAGGGA 58.960 41.667 0.00 0.00 0.00 4.20
5178 5414 5.372373 GAGACCTTTATTCCATCTTCAGGG 58.628 45.833 0.00 0.00 0.00 4.45
5179 5415 5.372373 GGAGACCTTTATTCCATCTTCAGG 58.628 45.833 0.00 0.00 0.00 3.86
5197 5433 2.433146 GGGGACTAAGCGGGGAGAC 61.433 68.421 0.00 0.00 0.00 3.36
5198 5434 2.042230 GGGGACTAAGCGGGGAGA 60.042 66.667 0.00 0.00 0.00 3.71
5199 5435 3.537874 CGGGGACTAAGCGGGGAG 61.538 72.222 0.00 0.00 0.00 4.30
5200 5436 3.910784 AACGGGGACTAAGCGGGGA 62.911 63.158 0.00 0.00 0.00 4.81
5201 5437 3.381333 GAACGGGGACTAAGCGGGG 62.381 68.421 0.00 0.00 0.00 5.73
5202 5438 2.186125 GAACGGGGACTAAGCGGG 59.814 66.667 0.00 0.00 0.00 6.13
5203 5439 2.186125 GGAACGGGGACTAAGCGG 59.814 66.667 0.00 0.00 0.00 5.52
5226 5462 3.179265 CCAACGGTGCTAGACGCG 61.179 66.667 3.53 3.53 43.27 6.01
5227 5463 2.048503 ACCAACGGTGCTAGACGC 60.049 61.111 0.00 0.00 32.98 5.19
5238 5474 4.920112 TCCACACGCCCACCAACG 62.920 66.667 0.00 0.00 0.00 4.10
5239 5475 2.978010 CTCCACACGCCCACCAAC 60.978 66.667 0.00 0.00 0.00 3.77
5240 5476 4.263572 CCTCCACACGCCCACCAA 62.264 66.667 0.00 0.00 0.00 3.67
5243 5479 4.250305 ACACCTCCACACGCCCAC 62.250 66.667 0.00 0.00 0.00 4.61
5244 5480 4.248842 CACACCTCCACACGCCCA 62.249 66.667 0.00 0.00 0.00 5.36
5245 5481 4.250305 ACACACCTCCACACGCCC 62.250 66.667 0.00 0.00 0.00 6.13
5246 5482 2.665185 GACACACCTCCACACGCC 60.665 66.667 0.00 0.00 0.00 5.68
5247 5483 1.664965 GAGACACACCTCCACACGC 60.665 63.158 0.00 0.00 0.00 5.34
5248 5484 4.655527 GAGACACACCTCCACACG 57.344 61.111 0.00 0.00 0.00 4.49
5254 5490 1.258445 ATCCACCGGAGACACACCTC 61.258 60.000 9.46 0.00 34.05 3.85
5255 5491 1.229209 ATCCACCGGAGACACACCT 60.229 57.895 9.46 0.00 34.05 4.00
5256 5492 1.218316 GATCCACCGGAGACACACC 59.782 63.158 9.46 0.00 34.05 4.16
5257 5493 1.471119 TAGATCCACCGGAGACACAC 58.529 55.000 9.46 0.00 34.05 3.82
5258 5494 2.091830 AGATAGATCCACCGGAGACACA 60.092 50.000 9.46 0.00 34.05 3.72
5259 5495 2.588620 AGATAGATCCACCGGAGACAC 58.411 52.381 9.46 2.93 34.05 3.67
5260 5496 3.314307 AAGATAGATCCACCGGAGACA 57.686 47.619 9.46 0.00 34.05 3.41
5261 5497 3.243907 CCAAAGATAGATCCACCGGAGAC 60.244 52.174 9.46 0.00 34.05 3.36
5262 5498 2.965831 CCAAAGATAGATCCACCGGAGA 59.034 50.000 9.46 4.59 34.05 3.71
5263 5499 2.700897 ACCAAAGATAGATCCACCGGAG 59.299 50.000 9.46 0.00 34.05 4.63
5264 5500 2.434336 CACCAAAGATAGATCCACCGGA 59.566 50.000 9.46 0.00 35.55 5.14
5265 5501 2.485479 CCACCAAAGATAGATCCACCGG 60.485 54.545 0.00 0.00 0.00 5.28
5266 5502 2.434336 TCCACCAAAGATAGATCCACCG 59.566 50.000 0.00 0.00 0.00 4.94
5267 5503 4.713792 ATCCACCAAAGATAGATCCACC 57.286 45.455 0.00 0.00 0.00 4.61
5268 5504 5.221126 GCAAATCCACCAAAGATAGATCCAC 60.221 44.000 0.00 0.00 0.00 4.02
5269 5505 4.889409 GCAAATCCACCAAAGATAGATCCA 59.111 41.667 0.00 0.00 0.00 3.41
5270 5506 5.136105 AGCAAATCCACCAAAGATAGATCC 58.864 41.667 0.00 0.00 0.00 3.36
5271 5507 5.049818 CGAGCAAATCCACCAAAGATAGATC 60.050 44.000 0.00 0.00 0.00 2.75
5272 5508 4.818546 CGAGCAAATCCACCAAAGATAGAT 59.181 41.667 0.00 0.00 0.00 1.98
5273 5509 4.191544 CGAGCAAATCCACCAAAGATAGA 58.808 43.478 0.00 0.00 0.00 1.98
5274 5510 3.313526 CCGAGCAAATCCACCAAAGATAG 59.686 47.826 0.00 0.00 0.00 2.08
5275 5511 3.054728 TCCGAGCAAATCCACCAAAGATA 60.055 43.478 0.00 0.00 0.00 1.98
5276 5512 2.094675 CCGAGCAAATCCACCAAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
5277 5513 1.073125 TCCGAGCAAATCCACCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
5278 5514 1.533625 TCCGAGCAAATCCACCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
5279 5515 2.091541 GATCCGAGCAAATCCACCAAA 58.908 47.619 0.00 0.00 0.00 3.28
5280 5516 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
5281 5517 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
5282 5518 1.587547 GAGATCCGAGCAAATCCACC 58.412 55.000 0.00 0.00 0.00 4.61
5283 5519 1.212616 CGAGATCCGAGCAAATCCAC 58.787 55.000 0.00 0.00 41.76 4.02
5284 5520 0.824109 ACGAGATCCGAGCAAATCCA 59.176 50.000 10.05 0.00 41.76 3.41
5285 5521 1.492720 GACGAGATCCGAGCAAATCC 58.507 55.000 10.05 0.00 41.76 3.01
5286 5522 1.124462 CGACGAGATCCGAGCAAATC 58.876 55.000 10.05 0.00 41.76 2.17
5287 5523 0.456221 ACGACGAGATCCGAGCAAAT 59.544 50.000 0.00 0.00 41.76 2.32
5288 5524 0.242825 AACGACGAGATCCGAGCAAA 59.757 50.000 0.00 0.00 41.76 3.68
5289 5525 0.456142 CAACGACGAGATCCGAGCAA 60.456 55.000 0.00 0.00 41.76 3.91
5290 5526 1.136774 CAACGACGAGATCCGAGCA 59.863 57.895 0.00 0.00 41.76 4.26
5291 5527 0.456312 AACAACGACGAGATCCGAGC 60.456 55.000 0.00 2.24 41.76 5.03
5292 5528 1.536149 GAACAACGACGAGATCCGAG 58.464 55.000 0.00 6.49 41.76 4.63
5293 5529 0.179207 CGAACAACGACGAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
5294 5530 0.453950 ACGAACAACGACGAGATCCG 60.454 55.000 0.00 2.02 45.77 4.18
5295 5531 1.135746 AGACGAACAACGACGAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
5296 5532 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
5297 5533 2.473540 CGTAGACGAACAACGACGAGAT 60.474 50.000 0.00 0.00 45.77 2.75
5298 5534 1.136529 CGTAGACGAACAACGACGAGA 60.137 52.381 0.00 0.00 45.77 4.04
5299 5535 1.236556 CGTAGACGAACAACGACGAG 58.763 55.000 0.00 0.00 45.77 4.18
5300 5536 0.581529 ACGTAGACGAACAACGACGA 59.418 50.000 9.41 0.00 45.77 4.20
5301 5537 1.376856 GAACGTAGACGAACAACGACG 59.623 52.381 9.41 0.00 45.77 5.12
5302 5538 1.376856 CGAACGTAGACGAACAACGAC 59.623 52.381 9.41 0.00 45.77 4.34
5303 5539 1.662360 CGAACGTAGACGAACAACGA 58.338 50.000 9.41 0.00 45.77 3.85
5304 5540 3.420685 CGCGAACGTAGACGAACAACG 62.421 57.143 9.41 7.66 43.02 4.10
5305 5541 0.088530 CGCGAACGTAGACGAACAAC 59.911 55.000 9.41 0.00 43.02 3.32
5306 5542 2.412900 CGCGAACGTAGACGAACAA 58.587 52.632 9.41 0.00 43.02 2.83
5307 5543 4.119936 CGCGAACGTAGACGAACA 57.880 55.556 9.41 0.00 43.02 3.18
5318 5554 0.093026 CAATCCGAAGACACGCGAAC 59.907 55.000 15.93 3.14 0.00 3.95
5319 5555 1.011968 CCAATCCGAAGACACGCGAA 61.012 55.000 15.93 0.00 0.00 4.70
5320 5556 1.445410 CCAATCCGAAGACACGCGA 60.445 57.895 15.93 0.00 0.00 5.87
5321 5557 0.806102 ATCCAATCCGAAGACACGCG 60.806 55.000 3.53 3.53 0.00 6.01
5322 5558 0.931005 GATCCAATCCGAAGACACGC 59.069 55.000 0.00 0.00 0.00 5.34
5323 5559 2.586258 AGATCCAATCCGAAGACACG 57.414 50.000 0.00 0.00 0.00 4.49
5324 5560 4.331168 CAGAAAGATCCAATCCGAAGACAC 59.669 45.833 0.00 0.00 0.00 3.67
5325 5561 4.222810 TCAGAAAGATCCAATCCGAAGACA 59.777 41.667 0.00 0.00 0.00 3.41
5326 5562 4.759782 TCAGAAAGATCCAATCCGAAGAC 58.240 43.478 0.00 0.00 0.00 3.01
5327 5563 5.605534 GATCAGAAAGATCCAATCCGAAGA 58.394 41.667 0.00 0.00 46.10 2.87
5328 5564 5.921004 GATCAGAAAGATCCAATCCGAAG 57.079 43.478 0.00 0.00 46.10 3.79
5340 5576 9.737427 GATGAAGAATAACGTAGATCAGAAAGA 57.263 33.333 0.00 0.00 0.00 2.52
5341 5577 9.743057 AGATGAAGAATAACGTAGATCAGAAAG 57.257 33.333 0.00 0.00 0.00 2.62
5342 5578 9.521503 CAGATGAAGAATAACGTAGATCAGAAA 57.478 33.333 0.00 0.00 0.00 2.52
5343 5579 7.649705 GCAGATGAAGAATAACGTAGATCAGAA 59.350 37.037 0.00 0.00 0.00 3.02
5344 5580 7.142021 GCAGATGAAGAATAACGTAGATCAGA 58.858 38.462 0.00 0.00 0.00 3.27
5345 5581 6.087423 CGCAGATGAAGAATAACGTAGATCAG 59.913 42.308 0.00 0.00 0.00 2.90
5346 5582 5.915196 CGCAGATGAAGAATAACGTAGATCA 59.085 40.000 0.00 0.00 0.00 2.92
5347 5583 5.343593 CCGCAGATGAAGAATAACGTAGATC 59.656 44.000 0.00 0.00 0.00 2.75
5348 5584 5.223382 CCGCAGATGAAGAATAACGTAGAT 58.777 41.667 0.00 0.00 0.00 1.98
5349 5585 4.607955 CCGCAGATGAAGAATAACGTAGA 58.392 43.478 0.00 0.00 0.00 2.59
5350 5586 3.182572 GCCGCAGATGAAGAATAACGTAG 59.817 47.826 0.00 0.00 0.00 3.51
5351 5587 3.120792 GCCGCAGATGAAGAATAACGTA 58.879 45.455 0.00 0.00 0.00 3.57
5352 5588 1.933853 GCCGCAGATGAAGAATAACGT 59.066 47.619 0.00 0.00 0.00 3.99
5353 5589 1.071239 CGCCGCAGATGAAGAATAACG 60.071 52.381 0.00 0.00 0.00 3.18
5354 5590 1.261619 CCGCCGCAGATGAAGAATAAC 59.738 52.381 0.00 0.00 0.00 1.89
5355 5591 1.134521 ACCGCCGCAGATGAAGAATAA 60.135 47.619 0.00 0.00 0.00 1.40
5356 5592 0.464036 ACCGCCGCAGATGAAGAATA 59.536 50.000 0.00 0.00 0.00 1.75
5357 5593 0.392998 AACCGCCGCAGATGAAGAAT 60.393 50.000 0.00 0.00 0.00 2.40
5358 5594 1.003839 AACCGCCGCAGATGAAGAA 60.004 52.632 0.00 0.00 0.00 2.52
5359 5595 1.741401 CAACCGCCGCAGATGAAGA 60.741 57.895 0.00 0.00 0.00 2.87
5360 5596 2.787249 CAACCGCCGCAGATGAAG 59.213 61.111 0.00 0.00 0.00 3.02
5361 5597 3.430862 GCAACCGCCGCAGATGAA 61.431 61.111 0.00 0.00 0.00 2.57
5362 5598 4.393155 AGCAACCGCCGCAGATGA 62.393 61.111 0.00 0.00 39.83 2.92
5363 5599 4.170062 CAGCAACCGCCGCAGATG 62.170 66.667 0.00 0.00 39.83 2.90
5364 5600 4.704833 ACAGCAACCGCCGCAGAT 62.705 61.111 0.00 0.00 39.83 2.90
5365 5601 4.927782 AACAGCAACCGCCGCAGA 62.928 61.111 0.00 0.00 39.83 4.26
5366 5602 4.389576 GAACAGCAACCGCCGCAG 62.390 66.667 0.00 0.00 39.83 5.18
5367 5603 4.927782 AGAACAGCAACCGCCGCA 62.928 61.111 0.00 0.00 39.83 5.69
5368 5604 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
5369 5605 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
5370 5606 2.594592 ACCAGAACAGCAACCGCC 60.595 61.111 0.00 0.00 39.83 6.13
5371 5607 2.639286 CACCAGAACAGCAACCGC 59.361 61.111 0.00 0.00 38.99 5.68
5372 5608 2.186160 TGCACCAGAACAGCAACCG 61.186 57.895 0.00 0.00 34.97 4.44
5373 5609 1.103398 AGTGCACCAGAACAGCAACC 61.103 55.000 14.63 0.00 40.35 3.77
5374 5610 0.029834 CAGTGCACCAGAACAGCAAC 59.970 55.000 14.63 0.00 40.35 4.17
5375 5611 1.102809 CCAGTGCACCAGAACAGCAA 61.103 55.000 14.63 0.00 40.35 3.91
5376 5612 1.526686 CCAGTGCACCAGAACAGCA 60.527 57.895 14.63 0.00 35.63 4.41
5377 5613 1.510480 GACCAGTGCACCAGAACAGC 61.510 60.000 14.63 0.00 0.00 4.40
5378 5614 0.886490 GGACCAGTGCACCAGAACAG 60.886 60.000 14.63 0.00 0.00 3.16
5379 5615 1.148273 GGACCAGTGCACCAGAACA 59.852 57.895 14.63 0.00 0.00 3.18
5380 5616 0.685097 TAGGACCAGTGCACCAGAAC 59.315 55.000 14.63 1.45 0.00 3.01
5381 5617 0.685097 GTAGGACCAGTGCACCAGAA 59.315 55.000 14.63 0.00 0.00 3.02
5382 5618 1.532604 CGTAGGACCAGTGCACCAGA 61.533 60.000 14.63 0.00 0.00 3.86
5383 5619 1.079819 CGTAGGACCAGTGCACCAG 60.080 63.158 14.63 7.78 0.00 4.00
5384 5620 3.056458 CGTAGGACCAGTGCACCA 58.944 61.111 14.63 0.00 0.00 4.17
5395 5631 2.062177 GTGCTAAGGCCCCGTAGGA 61.062 63.158 0.00 0.00 45.58 2.94
5396 5632 2.504519 GTGCTAAGGCCCCGTAGG 59.495 66.667 0.00 0.00 41.97 3.18
5397 5633 2.106332 CGTGCTAAGGCCCCGTAG 59.894 66.667 0.00 0.00 37.74 3.51
5398 5634 2.362760 TCGTGCTAAGGCCCCGTA 60.363 61.111 0.00 0.00 37.74 4.02
5399 5635 4.078516 GTCGTGCTAAGGCCCCGT 62.079 66.667 0.00 0.00 37.74 5.28
5401 5637 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
5402 5638 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
5403 5639 0.669625 AAAGTCGTCGTGCTAAGGCC 60.670 55.000 0.00 0.00 37.74 5.19
5404 5640 0.714439 GAAAGTCGTCGTGCTAAGGC 59.286 55.000 0.00 0.00 39.26 4.35
5405 5641 1.347320 GGAAAGTCGTCGTGCTAAGG 58.653 55.000 0.00 0.00 0.00 2.69
5406 5642 0.982673 CGGAAAGTCGTCGTGCTAAG 59.017 55.000 0.00 0.00 0.00 2.18
5407 5643 0.592637 TCGGAAAGTCGTCGTGCTAA 59.407 50.000 0.00 0.00 0.00 3.09
5408 5644 0.110056 GTCGGAAAGTCGTCGTGCTA 60.110 55.000 0.00 0.00 0.00 3.49
5409 5645 1.371389 GTCGGAAAGTCGTCGTGCT 60.371 57.895 0.00 0.00 0.00 4.40
5410 5646 1.371389 AGTCGGAAAGTCGTCGTGC 60.371 57.895 0.00 0.00 0.00 5.34
5411 5647 0.317603 ACAGTCGGAAAGTCGTCGTG 60.318 55.000 0.00 0.00 0.00 4.35
5412 5648 0.040603 GACAGTCGGAAAGTCGTCGT 60.041 55.000 0.00 0.00 0.00 4.34
5413 5649 0.237761 AGACAGTCGGAAAGTCGTCG 59.762 55.000 0.00 0.00 37.36 5.12
5414 5650 2.483491 AGTAGACAGTCGGAAAGTCGTC 59.517 50.000 0.00 0.00 37.36 4.20
5415 5651 2.502295 AGTAGACAGTCGGAAAGTCGT 58.498 47.619 0.00 0.00 37.36 4.34
5416 5652 3.434641 TGTAGTAGACAGTCGGAAAGTCG 59.565 47.826 0.00 0.00 37.36 4.18
5417 5653 5.152804 GTTGTAGTAGACAGTCGGAAAGTC 58.847 45.833 0.00 3.60 39.88 3.01
5418 5654 4.581824 TGTTGTAGTAGACAGTCGGAAAGT 59.418 41.667 0.00 0.00 39.88 2.66
5419 5655 5.117355 TGTTGTAGTAGACAGTCGGAAAG 57.883 43.478 0.00 0.00 39.88 2.62
5420 5656 5.068198 ACTTGTTGTAGTAGACAGTCGGAAA 59.932 40.000 0.00 0.00 39.88 3.13
5421 5657 4.581824 ACTTGTTGTAGTAGACAGTCGGAA 59.418 41.667 0.00 0.00 39.88 4.30
5422 5658 4.139786 ACTTGTTGTAGTAGACAGTCGGA 58.860 43.478 0.00 0.00 39.88 4.55
5423 5659 4.500603 ACTTGTTGTAGTAGACAGTCGG 57.499 45.455 0.00 0.00 39.88 4.79
5424 5660 5.173312 CACAACTTGTTGTAGTAGACAGTCG 59.827 44.000 17.26 0.00 39.88 4.18
5425 5661 5.050972 GCACAACTTGTTGTAGTAGACAGTC 60.051 44.000 17.26 0.00 39.88 3.51
5426 5662 4.809426 GCACAACTTGTTGTAGTAGACAGT 59.191 41.667 17.26 0.00 39.88 3.55
5427 5663 4.211374 GGCACAACTTGTTGTAGTAGACAG 59.789 45.833 17.26 5.63 39.88 3.51
5428 5664 4.124238 GGCACAACTTGTTGTAGTAGACA 58.876 43.478 17.26 0.00 35.78 3.41
5429 5665 3.497262 GGGCACAACTTGTTGTAGTAGAC 59.503 47.826 17.26 8.51 33.17 2.59
5430 5666 3.735591 GGGCACAACTTGTTGTAGTAGA 58.264 45.455 17.26 0.00 33.17 2.59
5431 5667 2.478894 CGGGCACAACTTGTTGTAGTAG 59.521 50.000 17.26 7.80 33.17 2.57
5432 5668 2.102757 TCGGGCACAACTTGTTGTAGTA 59.897 45.455 17.26 1.74 33.17 1.82
5433 5669 1.134340 TCGGGCACAACTTGTTGTAGT 60.134 47.619 17.26 0.00 33.17 2.73
5434 5670 1.263217 GTCGGGCACAACTTGTTGTAG 59.737 52.381 17.26 12.96 33.17 2.74
5435 5671 1.134340 AGTCGGGCACAACTTGTTGTA 60.134 47.619 17.26 1.01 33.17 2.41
5436 5672 0.393808 AGTCGGGCACAACTTGTTGT 60.394 50.000 12.73 12.73 35.14 3.32
5437 5673 0.307760 GAGTCGGGCACAACTTGTTG 59.692 55.000 11.44 11.44 0.00 3.33
5438 5674 0.818040 GGAGTCGGGCACAACTTGTT 60.818 55.000 0.00 0.00 0.00 2.83
5439 5675 1.227853 GGAGTCGGGCACAACTTGT 60.228 57.895 0.00 0.00 0.00 3.16
5440 5676 2.317609 CGGAGTCGGGCACAACTTG 61.318 63.158 0.00 0.00 0.00 3.16
5441 5677 2.030562 CGGAGTCGGGCACAACTT 59.969 61.111 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.