Multiple sequence alignment - TraesCS4B01G196400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G196400 chr4B 100.000 6840 0 0 1 6840 423059249 423052410 0.000000e+00 12632.0
1 TraesCS4B01G196400 chr4B 85.565 859 96 13 1 838 122268016 122267165 0.000000e+00 874.0
2 TraesCS4B01G196400 chr2A 93.909 2315 96 30 1270 3560 657091832 657094125 0.000000e+00 3452.0
3 TraesCS4B01G196400 chr2A 92.003 2451 124 26 3748 6163 657094112 657096525 0.000000e+00 3374.0
4 TraesCS4B01G196400 chr2A 91.456 515 28 9 6325 6838 657096733 657097232 0.000000e+00 693.0
5 TraesCS4B01G196400 chr2A 99.476 191 1 0 3560 3750 775435557 775435367 1.410000e-91 348.0
6 TraesCS4B01G196400 chr4D 91.460 2459 135 30 3748 6163 341406059 341403633 0.000000e+00 3310.0
7 TraesCS4B01G196400 chr4D 93.527 1483 66 16 1635 3103 341408141 341406675 0.000000e+00 2180.0
8 TraesCS4B01G196400 chr4D 92.366 786 44 6 870 1642 341410238 341409456 0.000000e+00 1105.0
9 TraesCS4B01G196400 chr4D 96.970 462 12 1 3099 3560 341406505 341406046 0.000000e+00 774.0
10 TraesCS4B01G196400 chr4D 82.868 823 125 15 1 810 23493977 23493158 0.000000e+00 725.0
11 TraesCS4B01G196400 chr4D 90.154 518 30 11 6324 6840 341403435 341402938 0.000000e+00 654.0
12 TraesCS4B01G196400 chr4A 94.859 1945 80 13 1627 3560 125391682 125393617 0.000000e+00 3020.0
13 TraesCS4B01G196400 chr4A 94.338 1572 52 18 4738 6281 125394777 125396339 0.000000e+00 2375.0
14 TraesCS4B01G196400 chr4A 97.246 690 16 2 3987 4675 125393814 125394501 0.000000e+00 1166.0
15 TraesCS4B01G196400 chr4A 94.231 520 17 9 6324 6840 125396339 125396848 0.000000e+00 782.0
16 TraesCS4B01G196400 chr4A 92.141 509 17 4 1135 1630 125391148 125391646 0.000000e+00 697.0
17 TraesCS4B01G196400 chr4A 97.071 239 5 1 3748 3986 125393604 125393840 1.070000e-107 401.0
18 TraesCS4B01G196400 chr4A 90.728 302 21 4 856 1151 125390835 125391135 4.970000e-106 396.0
19 TraesCS4B01G196400 chr4A 80.705 482 79 9 1 470 472916760 472917239 5.040000e-96 363.0
20 TraesCS4B01G196400 chrUn 92.736 1473 74 17 3748 5213 365648441 365646995 0.000000e+00 2097.0
21 TraesCS4B01G196400 chrUn 92.434 793 44 7 865 1642 335166213 335167004 0.000000e+00 1118.0
22 TraesCS4B01G196400 chrUn 96.970 462 12 1 3099 3560 365648887 365648428 0.000000e+00 774.0
23 TraesCS4B01G196400 chrUn 90.406 542 27 7 5643 6163 418950013 418950550 0.000000e+00 689.0
24 TraesCS4B01G196400 chrUn 90.347 518 28 11 6324 6840 418950757 418951253 0.000000e+00 660.0
25 TraesCS4B01G196400 chrUn 92.166 434 29 3 870 1299 475953374 475952942 5.870000e-170 608.0
26 TraesCS4B01G196400 chrUn 87.385 436 34 11 3784 4218 477180223 477180638 1.330000e-131 481.0
27 TraesCS4B01G196400 chrUn 100.000 33 0 0 6232 6264 418950626 418950658 2.060000e-05 62.1
28 TraesCS4B01G196400 chr2B 88.808 822 61 14 1 810 58230676 58229874 0.000000e+00 979.0
29 TraesCS4B01G196400 chr2B 83.531 844 115 14 9 838 755984493 755985326 0.000000e+00 767.0
30 TraesCS4B01G196400 chr2B 96.714 213 4 3 3546 3755 763841063 763841275 1.090000e-92 351.0
31 TraesCS4B01G196400 chr2B 98.964 193 1 1 3562 3754 346561190 346560999 1.830000e-90 344.0
32 TraesCS4B01G196400 chr2B 78.681 455 80 13 178 618 23855203 23855654 3.120000e-73 287.0
33 TraesCS4B01G196400 chr6B 83.724 854 108 24 9 838 5877626 5876780 0.000000e+00 778.0
34 TraesCS4B01G196400 chr6B 77.752 863 153 27 3 838 121730867 121731717 1.710000e-135 494.0
35 TraesCS4B01G196400 chr6B 99.476 191 1 0 3561 3751 15113194 15113004 1.410000e-91 348.0
36 TraesCS4B01G196400 chr6B 98.964 193 2 0 3561 3753 422696833 422697025 5.080000e-91 346.0
37 TraesCS4B01G196400 chr6B 84.286 70 8 3 6260 6328 630918633 630918700 1.590000e-06 65.8
38 TraesCS4B01G196400 chr5B 80.936 855 138 17 1 838 23348890 23349736 0.000000e+00 652.0
39 TraesCS4B01G196400 chr5B 76.068 351 68 13 494 838 539088622 539088282 1.180000e-37 169.0
40 TraesCS4B01G196400 chr1B 80.283 847 141 20 1 830 688355908 688355071 3.510000e-172 616.0
41 TraesCS4B01G196400 chr1B 79.684 822 152 9 1 811 186498220 186497403 4.600000e-161 579.0
42 TraesCS4B01G196400 chr1B 86.364 66 6 3 6260 6324 430155451 430155514 1.230000e-07 69.4
43 TraesCS4B01G196400 chr1B 84.286 70 8 3 6258 6326 99639917 99639850 1.590000e-06 65.8
44 TraesCS4B01G196400 chr5D 79.625 854 149 16 1 838 369346651 369345807 2.120000e-164 590.0
45 TraesCS4B01G196400 chr1D 76.995 852 166 23 6 838 112820635 112819795 1.740000e-125 460.0
46 TraesCS4B01G196400 chr1D 84.286 70 8 3 6258 6326 197724586 197724519 1.590000e-06 65.8
47 TraesCS4B01G196400 chr7D 87.644 348 41 1 1 348 488558220 488557875 2.970000e-108 403.0
48 TraesCS4B01G196400 chr7D 87.029 239 16 9 6357 6592 568325800 568326026 8.800000e-64 255.0
49 TraesCS4B01G196400 chr7B 98.969 194 1 1 3557 3750 443081573 443081765 5.080000e-91 346.0
50 TraesCS4B01G196400 chr7B 98.469 196 2 1 3555 3749 670283189 670283384 1.830000e-90 344.0
51 TraesCS4B01G196400 chr7B 86.809 235 17 7 6361 6592 703109522 703109299 4.100000e-62 250.0
52 TraesCS4B01G196400 chr3B 98.969 194 1 1 3557 3749 642821359 642821166 5.080000e-91 346.0
53 TraesCS4B01G196400 chr3B 95.556 45 2 0 6291 6335 631004573 631004529 9.520000e-09 73.1
54 TraesCS4B01G196400 chr5A 96.154 208 5 3 3542 3749 492468975 492468771 3.060000e-88 337.0
55 TraesCS4B01G196400 chr5A 83.750 240 22 10 6357 6592 457007505 457007731 1.930000e-50 211.0
56 TraesCS4B01G196400 chr6A 86.920 237 15 9 6361 6593 135573408 135573632 1.140000e-62 252.0
57 TraesCS4B01G196400 chr6A 85.294 68 7 3 6260 6326 81846932 81846997 4.430000e-07 67.6
58 TraesCS4B01G196400 chr1A 86.555 238 15 10 6361 6593 555102891 555102666 5.300000e-61 246.0
59 TraesCS4B01G196400 chr7A 85.714 238 17 10 6361 6593 86148238 86148013 1.150000e-57 235.0
60 TraesCS4B01G196400 chr3D 97.826 46 0 1 6291 6335 13983826 13983781 2.050000e-10 78.7
61 TraesCS4B01G196400 chr2D 97.727 44 1 0 6289 6332 509246060 509246103 7.360000e-10 76.8
62 TraesCS4B01G196400 chr3A 84.058 69 8 3 6260 6327 125494784 125494850 5.730000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G196400 chr4B 423052410 423059249 6839 True 12632.000000 12632 100.000000 1 6840 1 chr4B.!!$R2 6839
1 TraesCS4B01G196400 chr4B 122267165 122268016 851 True 874.000000 874 85.565000 1 838 1 chr4B.!!$R1 837
2 TraesCS4B01G196400 chr2A 657091832 657097232 5400 False 2506.333333 3452 92.456000 1270 6838 3 chr2A.!!$F1 5568
3 TraesCS4B01G196400 chr4D 341402938 341410238 7300 True 1604.600000 3310 92.895400 870 6840 5 chr4D.!!$R2 5970
4 TraesCS4B01G196400 chr4D 23493158 23493977 819 True 725.000000 725 82.868000 1 810 1 chr4D.!!$R1 809
5 TraesCS4B01G196400 chr4A 125390835 125396848 6013 False 1262.428571 3020 94.373429 856 6840 7 chr4A.!!$F2 5984
6 TraesCS4B01G196400 chrUn 365646995 365648887 1892 True 1435.500000 2097 94.853000 3099 5213 2 chrUn.!!$R2 2114
7 TraesCS4B01G196400 chrUn 335166213 335167004 791 False 1118.000000 1118 92.434000 865 1642 1 chrUn.!!$F1 777
8 TraesCS4B01G196400 chrUn 418950013 418951253 1240 False 470.366667 689 93.584333 5643 6840 3 chrUn.!!$F3 1197
9 TraesCS4B01G196400 chr2B 58229874 58230676 802 True 979.000000 979 88.808000 1 810 1 chr2B.!!$R1 809
10 TraesCS4B01G196400 chr2B 755984493 755985326 833 False 767.000000 767 83.531000 9 838 1 chr2B.!!$F2 829
11 TraesCS4B01G196400 chr6B 5876780 5877626 846 True 778.000000 778 83.724000 9 838 1 chr6B.!!$R1 829
12 TraesCS4B01G196400 chr6B 121730867 121731717 850 False 494.000000 494 77.752000 3 838 1 chr6B.!!$F1 835
13 TraesCS4B01G196400 chr5B 23348890 23349736 846 False 652.000000 652 80.936000 1 838 1 chr5B.!!$F1 837
14 TraesCS4B01G196400 chr1B 688355071 688355908 837 True 616.000000 616 80.283000 1 830 1 chr1B.!!$R3 829
15 TraesCS4B01G196400 chr1B 186497403 186498220 817 True 579.000000 579 79.684000 1 811 1 chr1B.!!$R2 810
16 TraesCS4B01G196400 chr5D 369345807 369346651 844 True 590.000000 590 79.625000 1 838 1 chr5D.!!$R1 837
17 TraesCS4B01G196400 chr1D 112819795 112820635 840 True 460.000000 460 76.995000 6 838 1 chr1D.!!$R1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 895 0.110056 CGCTCGCAAAACATGAAGCT 60.110 50.000 0.00 0.0 37.27 3.74 F
903 945 0.183971 TCGTCCCCAGGAAAAAGCAA 59.816 50.000 0.00 0.0 31.38 3.91 F
2340 3808 0.249868 AGCGCACTGTTCTAGCACAA 60.250 50.000 11.47 0.0 0.00 3.33 F
2718 4187 0.738975 CTTGCTGATGACCTGCATGG 59.261 55.000 0.00 0.0 46.70 3.66 F
3969 5627 0.038159 GTGTCCGTCTCCAGTTCCAG 60.038 60.000 0.00 0.0 0.00 3.86 F
3977 5635 1.078918 TCCAGTTCCAGCAGCGATG 60.079 57.895 0.00 0.0 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2658 4127 0.173255 GGCAATGCAGCGGTAACAAT 59.827 50.0 7.79 0.0 34.64 2.71 R
2695 4164 1.085091 GCAGGTCATCAGCAAGAGTG 58.915 55.0 0.00 0.0 0.00 3.51 R
3592 5248 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.0 44.78 4.85 R
3974 5632 0.169009 GAACTGGAAGCGTTGGCATC 59.831 55.0 0.00 0.0 43.41 3.91 R
5746 7654 0.248289 GCATCTGCAAAGCCAACCAT 59.752 50.0 0.00 0.0 41.59 3.55 R
5913 7822 0.387202 CCATCTCCACAGGCTCGTAG 59.613 60.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 1.131303 TCAACCCGGACCCAGACATT 61.131 55.000 0.73 0.00 0.00 2.71
225 226 5.554822 ACATTGAAATCAAATTGCCATGC 57.445 34.783 0.00 0.00 39.55 4.06
266 268 1.144936 CAATCTCCCTCACTCCCGC 59.855 63.158 0.00 0.00 0.00 6.13
314 317 5.415077 CCAATGATCTTGAACTGAGCTTCTT 59.585 40.000 0.00 0.00 0.00 2.52
377 391 2.618709 CTCTTGTTCGGGTGAAAGCTTT 59.381 45.455 12.53 12.53 35.46 3.51
722 763 1.153066 TCTGCACACCGGCTCAAAA 60.153 52.632 0.00 0.00 34.04 2.44
811 852 2.202756 CCCTAGCGTTCGAGCCAC 60.203 66.667 0.00 0.00 38.01 5.01
812 853 2.579787 CCTAGCGTTCGAGCCACG 60.580 66.667 3.80 3.80 44.09 4.94
817 858 2.395690 CGTTCGAGCCACGCAATC 59.604 61.111 0.00 0.00 42.26 2.67
818 859 2.395690 GTTCGAGCCACGCAATCG 59.604 61.111 0.00 0.00 42.26 3.34
819 860 3.487202 TTCGAGCCACGCAATCGC 61.487 61.111 0.00 0.00 42.26 4.58
822 863 3.567797 GAGCCACGCAATCGCCTC 61.568 66.667 0.00 0.00 39.84 4.70
823 864 4.393155 AGCCACGCAATCGCCTCA 62.393 61.111 0.00 0.00 39.84 3.86
824 865 3.430862 GCCACGCAATCGCCTCAA 61.431 61.111 0.00 0.00 39.84 3.02
825 866 2.764314 GCCACGCAATCGCCTCAAT 61.764 57.895 0.00 0.00 39.84 2.57
826 867 1.353103 CCACGCAATCGCCTCAATC 59.647 57.895 0.00 0.00 39.84 2.67
827 868 1.011904 CACGCAATCGCCTCAATCG 60.012 57.895 0.00 0.00 39.84 3.34
828 869 2.052766 CGCAATCGCCTCAATCGC 60.053 61.111 0.00 0.00 33.11 4.58
829 870 2.329339 GCAATCGCCTCAATCGCC 59.671 61.111 0.00 0.00 0.00 5.54
830 871 2.628106 CAATCGCCTCAATCGCCG 59.372 61.111 0.00 0.00 0.00 6.46
831 872 3.272334 AATCGCCTCAATCGCCGC 61.272 61.111 0.00 0.00 0.00 6.53
832 873 4.529219 ATCGCCTCAATCGCCGCA 62.529 61.111 0.00 0.00 0.00 5.69
833 874 4.751093 TCGCCTCAATCGCCGCAA 62.751 61.111 0.00 0.00 0.00 4.85
834 875 3.576356 CGCCTCAATCGCCGCAAT 61.576 61.111 0.00 0.00 0.00 3.56
835 876 2.329339 GCCTCAATCGCCGCAATC 59.671 61.111 0.00 0.00 0.00 2.67
836 877 2.628106 CCTCAATCGCCGCAATCG 59.372 61.111 0.00 0.00 0.00 3.34
837 878 2.052766 CTCAATCGCCGCAATCGC 60.053 61.111 0.00 0.00 0.00 4.58
838 879 2.511373 TCAATCGCCGCAATCGCT 60.511 55.556 0.00 0.00 35.30 4.93
839 880 2.052766 CAATCGCCGCAATCGCTC 60.053 61.111 0.00 0.00 35.30 5.03
840 881 3.630148 AATCGCCGCAATCGCTCG 61.630 61.111 0.00 0.00 35.30 5.03
844 885 4.459331 GCCGCAATCGCTCGCAAA 62.459 61.111 0.00 0.00 35.30 3.68
845 886 2.175566 CCGCAATCGCTCGCAAAA 59.824 55.556 0.00 0.00 35.30 2.44
846 887 2.145905 CCGCAATCGCTCGCAAAAC 61.146 57.895 0.00 0.00 35.30 2.43
847 888 1.440188 CGCAATCGCTCGCAAAACA 60.440 52.632 0.00 0.00 35.30 2.83
848 889 0.794229 CGCAATCGCTCGCAAAACAT 60.794 50.000 0.00 0.00 35.30 2.71
849 890 0.636733 GCAATCGCTCGCAAAACATG 59.363 50.000 0.00 0.00 34.30 3.21
850 891 1.728825 GCAATCGCTCGCAAAACATGA 60.729 47.619 0.00 0.00 34.30 3.07
851 892 2.583739 CAATCGCTCGCAAAACATGAA 58.416 42.857 0.00 0.00 0.00 2.57
852 893 2.532531 ATCGCTCGCAAAACATGAAG 57.467 45.000 0.00 0.00 0.00 3.02
853 894 0.110238 TCGCTCGCAAAACATGAAGC 60.110 50.000 0.00 0.00 36.52 3.86
854 895 0.110056 CGCTCGCAAAACATGAAGCT 60.110 50.000 0.00 0.00 37.27 3.74
869 910 6.166279 ACATGAAGCTCTCGATTTGAAACTA 58.834 36.000 0.00 0.00 0.00 2.24
870 911 6.820656 ACATGAAGCTCTCGATTTGAAACTAT 59.179 34.615 0.00 0.00 0.00 2.12
871 912 6.653273 TGAAGCTCTCGATTTGAAACTATG 57.347 37.500 0.00 0.00 0.00 2.23
872 913 6.398095 TGAAGCTCTCGATTTGAAACTATGA 58.602 36.000 0.00 0.00 0.00 2.15
874 915 4.808364 AGCTCTCGATTTGAAACTATGAGC 59.192 41.667 13.24 13.24 43.01 4.26
895 937 0.533308 CAAACGTTTCGTCCCCAGGA 60.533 55.000 11.37 0.00 39.99 3.86
903 945 0.183971 TCGTCCCCAGGAAAAAGCAA 59.816 50.000 0.00 0.00 31.38 3.91
912 954 4.058124 CCAGGAAAAAGCAAAAACCTAGC 58.942 43.478 0.00 0.00 0.00 3.42
933 975 8.336080 CCTAGCGGACTCATCTAAAAATAAAAC 58.664 37.037 0.00 0.00 0.00 2.43
1127 1172 3.003173 TGGTCAGCTTCCCCTCCG 61.003 66.667 2.68 0.00 0.00 4.63
1157 1232 4.403752 AGCTCTCTTCCTGTTTTGCTTTTT 59.596 37.500 0.00 0.00 0.00 1.94
1169 1244 6.337356 TGTTTTGCTTTTTAACTTCCTCTGG 58.663 36.000 0.00 0.00 0.00 3.86
1213 1288 1.792118 GAAACCACCGCCACCTTGAC 61.792 60.000 0.00 0.00 0.00 3.18
1217 1292 1.603455 CACCGCCACCTTGACCAAT 60.603 57.895 0.00 0.00 0.00 3.16
1226 1301 4.807643 GCCACCTTGACCAATTTCTACTCT 60.808 45.833 0.00 0.00 0.00 3.24
1428 1511 0.606401 AGCATACGCAGCAACCAGTT 60.606 50.000 0.00 0.00 42.27 3.16
1633 1771 9.512588 TGGTATCCTGTAGCTAATTAGTAGTAC 57.487 37.037 13.91 12.61 31.78 2.73
1673 3133 3.360463 CACGCGTGTTGAAATACAAATGG 59.640 43.478 30.50 0.00 40.36 3.16
1679 3139 5.537188 GTGTTGAAATACAAATGGAGGCAA 58.463 37.500 0.00 0.00 40.36 4.52
1980 3441 3.198068 GACGACATGGTATGCACTTCAT 58.802 45.455 0.00 0.00 39.17 2.57
1983 3446 3.622612 CGACATGGTATGCACTTCATTGA 59.377 43.478 0.00 0.00 36.63 2.57
2001 3464 8.564648 TTCATTGATATTCTTGCTAAATTGCG 57.435 30.769 0.00 0.00 35.36 4.85
2002 3465 7.706159 TCATTGATATTCTTGCTAAATTGCGT 58.294 30.769 0.00 0.00 35.36 5.24
2004 3467 9.449550 CATTGATATTCTTGCTAAATTGCGTAA 57.550 29.630 0.00 0.00 35.36 3.18
2042 3505 2.808244 CTGTTGCTCAGTCTAGCTAGC 58.192 52.381 16.35 6.62 43.19 3.42
2045 3508 1.397672 TGCTCAGTCTAGCTAGCTGG 58.602 55.000 29.04 24.43 43.19 4.85
2060 3523 1.527433 GCTGGCAAGGTTCAAGTCCC 61.527 60.000 0.00 0.00 0.00 4.46
2076 3539 5.707298 TCAAGTCCCATCTGTTTTTCATCTC 59.293 40.000 0.00 0.00 0.00 2.75
2151 3618 5.355350 GCTATGGTAGTTGCAAATCTTGACT 59.645 40.000 1.02 0.00 0.00 3.41
2174 3641 6.455360 TGATTTTCAGCAAGTATGAATCCC 57.545 37.500 0.00 0.00 36.60 3.85
2182 3649 4.078980 AGCAAGTATGAATCCCCCTTCATT 60.079 41.667 4.79 0.00 41.89 2.57
2193 3660 3.916349 TCCCCCTTCATTCCTATGTATGG 59.084 47.826 0.00 0.00 33.34 2.74
2197 3664 6.011628 CCCCCTTCATTCCTATGTATGGTTAT 60.012 42.308 0.00 0.00 33.34 1.89
2251 3718 3.982475 TCATAGCCGTAAATCAGCTCAG 58.018 45.455 0.00 0.00 38.06 3.35
2252 3719 2.890808 TAGCCGTAAATCAGCTCAGG 57.109 50.000 0.00 0.00 38.06 3.86
2253 3720 1.195115 AGCCGTAAATCAGCTCAGGA 58.805 50.000 0.00 0.00 28.40 3.86
2256 3724 3.388024 AGCCGTAAATCAGCTCAGGAATA 59.612 43.478 0.00 0.00 28.40 1.75
2311 3779 2.140065 GCAAGTTCTGCCAAAAGGAC 57.860 50.000 0.00 0.00 46.13 3.85
2340 3808 0.249868 AGCGCACTGTTCTAGCACAA 60.250 50.000 11.47 0.00 0.00 3.33
2468 3936 8.474831 AGGTTTGTAGCTTTTTGTTTAGTTCAT 58.525 29.630 0.00 0.00 0.00 2.57
2514 3982 4.057406 TGTGAATTTTGTTCCTTGCCTG 57.943 40.909 0.00 0.00 0.00 4.85
2539 4007 6.317391 GTGAAACCAGGAATCTAGGAGAAATG 59.683 42.308 0.00 0.00 0.00 2.32
2567 4035 2.880890 TGCTGTTTCTGGAGCTCTTTTC 59.119 45.455 14.64 0.00 36.11 2.29
2579 4048 4.878971 GGAGCTCTTTTCTTTACCATCCTC 59.121 45.833 14.64 0.00 0.00 3.71
2675 4144 2.917701 TGATTGTTACCGCTGCATTG 57.082 45.000 0.00 0.00 0.00 2.82
2688 4157 4.111198 CGCTGCATTGCCATATGTAAAAA 58.889 39.130 6.12 0.00 0.00 1.94
2718 4187 0.738975 CTTGCTGATGACCTGCATGG 59.261 55.000 0.00 0.00 46.70 3.66
2824 4293 4.843220 AATGCAGAGAAGAAAAGGTGTG 57.157 40.909 0.00 0.00 0.00 3.82
3324 4978 1.394618 AGCGTAAGAGCCTCGATCTT 58.605 50.000 5.20 5.20 41.33 2.40
3326 4980 1.335496 GCGTAAGAGCCTCGATCTTCT 59.665 52.381 3.10 0.00 37.66 2.85
3520 5176 4.647853 TCTGTTCGCTAATTAAGGGCTCTA 59.352 41.667 0.00 0.00 38.04 2.43
3568 5224 2.044650 GCTGCATGCTGAAGGGGA 60.045 61.111 26.71 0.00 38.95 4.81
3569 5225 2.119655 GCTGCATGCTGAAGGGGAG 61.120 63.158 26.71 10.63 38.95 4.30
3570 5226 2.044650 TGCATGCTGAAGGGGAGC 60.045 61.111 20.33 0.00 36.95 4.70
3571 5227 2.832201 GCATGCTGAAGGGGAGCC 60.832 66.667 11.37 0.00 35.43 4.70
3572 5228 3.004951 CATGCTGAAGGGGAGCCT 58.995 61.111 0.00 0.00 35.43 4.58
3573 5229 1.305623 CATGCTGAAGGGGAGCCTT 59.694 57.895 0.00 0.00 35.43 4.35
3574 5230 1.035932 CATGCTGAAGGGGAGCCTTG 61.036 60.000 0.00 0.00 35.43 3.61
3575 5231 2.044551 GCTGAAGGGGAGCCTTGG 60.045 66.667 0.00 0.00 0.00 3.61
3576 5232 2.044551 CTGAAGGGGAGCCTTGGC 60.045 66.667 2.97 2.97 0.00 4.52
3577 5233 3.984193 CTGAAGGGGAGCCTTGGCG 62.984 68.421 5.95 0.00 0.00 5.69
3585 5241 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3586 5242 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3587 5243 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3588 5244 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3589 5245 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3590 5246 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3591 5247 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3596 5252 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3597 5253 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3598 5254 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3599 5255 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3600 5256 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3601 5257 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3602 5258 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3603 5259 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3604 5260 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3605 5261 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3606 5262 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3607 5263 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3608 5264 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3609 5265 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3610 5266 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3625 5281 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
3626 5282 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
3627 5283 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
3628 5284 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
3629 5285 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
3630 5286 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
3631 5287 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
3632 5288 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
3633 5289 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
3634 5290 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
3651 5307 6.721318 TGGAAACAGCCTCTTATAGAAATGT 58.279 36.000 0.00 0.00 35.01 2.71
3652 5308 7.857456 TGGAAACAGCCTCTTATAGAAATGTA 58.143 34.615 0.00 0.00 35.01 2.29
3653 5309 7.987458 TGGAAACAGCCTCTTATAGAAATGTAG 59.013 37.037 0.00 0.00 35.01 2.74
3654 5310 7.442666 GGAAACAGCCTCTTATAGAAATGTAGG 59.557 40.741 0.00 0.00 0.00 3.18
3655 5311 6.426646 ACAGCCTCTTATAGAAATGTAGGG 57.573 41.667 0.00 0.00 0.00 3.53
3656 5312 6.143915 ACAGCCTCTTATAGAAATGTAGGGA 58.856 40.000 0.00 0.00 0.00 4.20
3657 5313 6.615726 ACAGCCTCTTATAGAAATGTAGGGAA 59.384 38.462 0.00 0.00 0.00 3.97
3658 5314 7.127339 ACAGCCTCTTATAGAAATGTAGGGAAA 59.873 37.037 0.00 0.00 0.00 3.13
3659 5315 7.659390 CAGCCTCTTATAGAAATGTAGGGAAAG 59.341 40.741 0.00 0.00 0.00 2.62
3660 5316 6.937465 GCCTCTTATAGAAATGTAGGGAAAGG 59.063 42.308 0.00 0.00 0.00 3.11
3661 5317 6.937465 CCTCTTATAGAAATGTAGGGAAAGGC 59.063 42.308 0.00 0.00 0.00 4.35
3662 5318 7.202139 CCTCTTATAGAAATGTAGGGAAAGGCT 60.202 40.741 0.00 0.00 0.00 4.58
3663 5319 7.509546 TCTTATAGAAATGTAGGGAAAGGCTG 58.490 38.462 0.00 0.00 0.00 4.85
3664 5320 2.728007 AGAAATGTAGGGAAAGGCTGC 58.272 47.619 0.00 0.00 0.00 5.25
3665 5321 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3666 5322 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3667 5323 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3668 5324 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3669 5325 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3670 5326 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3671 5327 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3672 5328 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3673 5329 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3674 5330 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3675 5331 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3676 5332 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3677 5333 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3678 5334 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3679 5335 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3680 5336 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3681 5337 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3682 5338 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3683 5339 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3684 5340 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3685 5341 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3690 5346 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3691 5347 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3692 5348 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3693 5349 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3694 5350 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3695 5351 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3696 5352 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3697 5353 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3698 5354 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3699 5355 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
3700 5356 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
3701 5357 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
3702 5358 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
3703 5359 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
3704 5360 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3705 5361 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3706 5362 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3707 5363 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3708 5364 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3709 5365 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3734 5390 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
3735 5391 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
3736 5392 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3737 5393 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3738 5394 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
3739 5395 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
3740 5396 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3741 5397 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3742 5398 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
3743 5399 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
3921 5577 2.878089 TAGTGCTGTTGCCTGGCGA 61.878 57.895 14.98 9.85 38.71 5.54
3922 5578 2.390306 TAGTGCTGTTGCCTGGCGAA 62.390 55.000 10.93 4.80 38.71 4.70
3966 5624 3.796667 GAGTGTCCGTCTCCAGTTC 57.203 57.895 0.00 0.00 0.00 3.01
3967 5625 0.244178 GAGTGTCCGTCTCCAGTTCC 59.756 60.000 0.00 0.00 0.00 3.62
3968 5626 0.469331 AGTGTCCGTCTCCAGTTCCA 60.469 55.000 0.00 0.00 0.00 3.53
3969 5627 0.038159 GTGTCCGTCTCCAGTTCCAG 60.038 60.000 0.00 0.00 0.00 3.86
3970 5628 1.079750 GTCCGTCTCCAGTTCCAGC 60.080 63.158 0.00 0.00 0.00 4.85
3971 5629 1.533033 TCCGTCTCCAGTTCCAGCA 60.533 57.895 0.00 0.00 0.00 4.41
3972 5630 1.079543 CCGTCTCCAGTTCCAGCAG 60.080 63.158 0.00 0.00 0.00 4.24
3973 5631 1.739562 CGTCTCCAGTTCCAGCAGC 60.740 63.158 0.00 0.00 0.00 5.25
3974 5632 1.739562 GTCTCCAGTTCCAGCAGCG 60.740 63.158 0.00 0.00 0.00 5.18
3975 5633 1.908299 TCTCCAGTTCCAGCAGCGA 60.908 57.895 0.00 0.00 0.00 4.93
3976 5634 1.220206 CTCCAGTTCCAGCAGCGAT 59.780 57.895 0.00 0.00 0.00 4.58
3977 5635 1.078918 TCCAGTTCCAGCAGCGATG 60.079 57.895 0.00 0.00 0.00 3.84
3978 5636 2.758089 CCAGTTCCAGCAGCGATGC 61.758 63.158 19.88 19.88 0.00 3.91
3979 5637 2.437359 AGTTCCAGCAGCGATGCC 60.437 61.111 24.00 6.36 34.90 4.40
3980 5638 2.747460 GTTCCAGCAGCGATGCCA 60.747 61.111 24.00 3.33 34.90 4.92
3981 5639 2.033911 TTCCAGCAGCGATGCCAA 59.966 55.556 24.00 10.21 34.90 4.52
3982 5640 2.334946 TTCCAGCAGCGATGCCAAC 61.335 57.895 24.00 0.00 34.90 3.77
3983 5641 4.170062 CCAGCAGCGATGCCAACG 62.170 66.667 24.00 8.54 34.90 4.10
4030 5688 3.134804 ACGCTGATACAAGGAATAAGGCT 59.865 43.478 0.00 0.00 0.00 4.58
4643 6315 5.071370 ACCTGGAATCTACTAGTACGGATG 58.929 45.833 0.00 0.00 0.00 3.51
4647 6319 6.802608 TGGAATCTACTAGTACGGATGTTTG 58.197 40.000 0.00 0.00 0.00 2.93
4657 6329 5.695818 AGTACGGATGTTTGTTTTGCATAC 58.304 37.500 0.00 0.00 0.00 2.39
4755 6640 8.315391 AGTTTAACTAACCTTACCAATTCGTC 57.685 34.615 0.00 0.00 37.46 4.20
4929 6814 4.636249 CAGTAGCTTATGGGCCTTAAGAG 58.364 47.826 32.24 15.78 0.00 2.85
5280 7174 1.369091 GGTAAGTGGCCTGATGTGCG 61.369 60.000 3.32 0.00 0.00 5.34
5722 7629 5.705441 ACAAACGATAATGACTGAACACCAT 59.295 36.000 0.00 0.00 0.00 3.55
5739 7646 3.826157 CACCATGTGTGTGTTTCCCTTAT 59.174 43.478 6.25 0.00 40.26 1.73
5862 7770 7.370383 TGAGCTCATAACTTTCCATTTGAAAC 58.630 34.615 13.74 0.00 38.04 2.78
5874 7782 5.015515 TCCATTTGAAACTATGTGCATCCA 58.984 37.500 0.00 0.00 0.00 3.41
5913 7822 2.191128 AGAGTTCACAGGCCATGTTC 57.809 50.000 5.01 1.29 41.41 3.18
5917 7827 1.732259 GTTCACAGGCCATGTTCTACG 59.268 52.381 5.01 0.00 41.41 3.51
6033 7943 0.392998 AGCGTGGGCAATACAGGAAG 60.393 55.000 0.00 0.00 43.41 3.46
6065 7975 5.042463 TGAGTTTAAATGGTCACTGGACA 57.958 39.130 0.00 0.00 46.17 4.02
6140 8075 1.081094 TCTGAAGATGCATGCACACG 58.919 50.000 25.37 10.22 0.00 4.49
6157 8092 2.093658 ACACGGCCAAAGGATGTACTAG 60.094 50.000 2.24 0.00 0.00 2.57
6163 8098 3.878778 CCAAAGGATGTACTAGCTGCTT 58.121 45.455 7.79 0.00 0.00 3.91
6165 8100 4.333926 CCAAAGGATGTACTAGCTGCTTTC 59.666 45.833 7.79 0.00 29.50 2.62
6166 8101 5.181748 CAAAGGATGTACTAGCTGCTTTCT 58.818 41.667 7.79 0.00 29.50 2.52
6171 8126 4.336889 TGTACTAGCTGCTTTCTGTGTT 57.663 40.909 7.79 0.00 0.00 3.32
6176 8133 3.874392 AGCTGCTTTCTGTGTTTGTTT 57.126 38.095 0.00 0.00 0.00 2.83
6184 8141 5.050431 GCTTTCTGTGTTTGTTTGTGTTGTT 60.050 36.000 0.00 0.00 0.00 2.83
6212 8169 4.098044 TGACCGAAACCAATTTTGCACTTA 59.902 37.500 0.00 0.00 0.00 2.24
6213 8170 5.208463 ACCGAAACCAATTTTGCACTTAT 57.792 34.783 0.00 0.00 0.00 1.73
6214 8171 5.606505 ACCGAAACCAATTTTGCACTTATT 58.393 33.333 0.00 0.00 0.00 1.40
6282 8321 9.935241 AGCATGTAGAAACTATATTACCATGAG 57.065 33.333 0.00 0.00 0.00 2.90
6283 8322 9.712305 GCATGTAGAAACTATATTACCATGAGT 57.288 33.333 0.00 0.00 0.00 3.41
6298 8337 8.506168 TTACCATGAGTTATGTTCATTTCTCC 57.494 34.615 0.00 0.00 33.14 3.71
6299 8338 5.586243 ACCATGAGTTATGTTCATTTCTCCG 59.414 40.000 0.00 0.00 33.14 4.63
6300 8339 5.817296 CCATGAGTTATGTTCATTTCTCCGA 59.183 40.000 0.00 0.00 33.14 4.55
6301 8340 6.238211 CCATGAGTTATGTTCATTTCTCCGAC 60.238 42.308 0.00 0.00 33.14 4.79
6302 8341 5.789521 TGAGTTATGTTCATTTCTCCGACA 58.210 37.500 11.22 0.00 0.00 4.35
6303 8342 6.227522 TGAGTTATGTTCATTTCTCCGACAA 58.772 36.000 11.22 0.00 0.00 3.18
6304 8343 6.368791 TGAGTTATGTTCATTTCTCCGACAAG 59.631 38.462 11.22 0.00 0.00 3.16
6305 8344 6.231211 AGTTATGTTCATTTCTCCGACAAGT 58.769 36.000 0.00 0.00 0.00 3.16
6306 8345 7.383687 AGTTATGTTCATTTCTCCGACAAGTA 58.616 34.615 0.00 0.00 0.00 2.24
6307 8346 8.041323 AGTTATGTTCATTTCTCCGACAAGTAT 58.959 33.333 0.00 0.00 0.00 2.12
6308 8347 8.665685 GTTATGTTCATTTCTCCGACAAGTATT 58.334 33.333 0.00 0.00 0.00 1.89
6309 8348 7.687941 ATGTTCATTTCTCCGACAAGTATTT 57.312 32.000 0.00 0.00 0.00 1.40
6310 8349 7.504924 TGTTCATTTCTCCGACAAGTATTTT 57.495 32.000 0.00 0.00 0.00 1.82
6311 8350 7.581476 TGTTCATTTCTCCGACAAGTATTTTC 58.419 34.615 0.00 0.00 0.00 2.29
6312 8351 6.403333 TCATTTCTCCGACAAGTATTTTCG 57.597 37.500 0.00 0.00 0.00 3.46
6318 8357 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
6319 8358 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
6320 8359 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
6321 8360 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
6322 8361 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
6391 8438 4.582701 ATGAACCAAGTTTGAATGCGAA 57.417 36.364 0.00 0.00 0.00 4.70
6522 8571 3.797865 GCGGATTTACCAGTAGCGTACAT 60.798 47.826 0.00 0.00 38.90 2.29
6524 8573 4.056050 GGATTTACCAGTAGCGTACATGG 58.944 47.826 0.00 0.00 38.79 3.66
6525 8574 4.202182 GGATTTACCAGTAGCGTACATGGA 60.202 45.833 0.00 0.00 38.79 3.41
6556 8607 1.302383 TTATGACCGGCCTTTGTGCG 61.302 55.000 0.00 0.00 0.00 5.34
6605 8656 1.831389 CGAAACACAGGACACCAGCG 61.831 60.000 0.00 0.00 0.00 5.18
6643 8699 0.264359 CACCATCTCTCCCTCCCTCT 59.736 60.000 0.00 0.00 0.00 3.69
6644 8700 1.022903 ACCATCTCTCCCTCCCTCTT 58.977 55.000 0.00 0.00 0.00 2.85
6645 8701 1.367848 ACCATCTCTCCCTCCCTCTTT 59.632 52.381 0.00 0.00 0.00 2.52
6646 8702 2.046292 CCATCTCTCCCTCCCTCTTTC 58.954 57.143 0.00 0.00 0.00 2.62
6647 8703 2.360209 CCATCTCTCCCTCCCTCTTTCT 60.360 54.545 0.00 0.00 0.00 2.52
6648 8704 2.838637 TCTCTCCCTCCCTCTTTCTC 57.161 55.000 0.00 0.00 0.00 2.87
6652 8708 2.243736 TCTCCCTCCCTCTTTCTCTCTC 59.756 54.545 0.00 0.00 0.00 3.20
6657 8713 0.820871 CCCTCTTTCTCTCTCCACCG 59.179 60.000 0.00 0.00 0.00 4.94
6726 8782 1.034838 ATGGCTTCGTCGAGAGCTCT 61.035 55.000 18.28 18.28 0.00 4.09
6757 8813 2.284921 CCCAGCCAGTCTCCTCCA 60.285 66.667 0.00 0.00 0.00 3.86
6819 8875 3.842923 CCTGATCACGAGGGCGCT 61.843 66.667 7.64 1.38 42.48 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 1.030457 TAGACGATCGAAGGCCTTCC 58.970 55.000 34.54 21.89 36.27 3.46
141 142 6.581712 TCGGAGATGATGTTTGAATATGTGA 58.418 36.000 0.00 0.00 0.00 3.58
266 268 5.059404 AGGAATTTATTTGCGGTGACTTG 57.941 39.130 0.00 0.00 0.00 3.16
314 317 1.214305 AGGGCTTGGGGACTGCATAA 61.214 55.000 0.00 0.00 33.38 1.90
351 354 0.105964 TCACCCGAACAAGAGTGTGG 59.894 55.000 0.00 0.00 38.27 4.17
377 391 3.133767 GATGTGGTCGGCGATCGGA 62.134 63.158 14.79 2.53 39.77 4.55
811 852 2.052766 GCGATTGAGGCGATTGCG 60.053 61.111 0.00 0.00 44.10 4.85
812 853 2.329339 GGCGATTGAGGCGATTGC 59.671 61.111 0.00 0.00 41.71 3.56
818 859 2.329339 GATTGCGGCGATTGAGGC 59.671 61.111 12.98 0.00 0.00 4.70
819 860 2.628106 CGATTGCGGCGATTGAGG 59.372 61.111 12.98 0.00 0.00 3.86
820 861 2.052766 GCGATTGCGGCGATTGAG 60.053 61.111 19.66 8.78 38.16 3.02
830 871 0.636733 CATGTTTTGCGAGCGATTGC 59.363 50.000 5.79 5.79 43.24 3.56
831 872 2.245795 TCATGTTTTGCGAGCGATTG 57.754 45.000 0.00 0.00 0.00 2.67
832 873 2.855180 CTTCATGTTTTGCGAGCGATT 58.145 42.857 0.00 0.00 0.00 3.34
833 874 1.466360 GCTTCATGTTTTGCGAGCGAT 60.466 47.619 0.00 0.00 0.00 4.58
834 875 0.110238 GCTTCATGTTTTGCGAGCGA 60.110 50.000 0.00 0.00 0.00 4.93
835 876 0.110056 AGCTTCATGTTTTGCGAGCG 60.110 50.000 0.00 0.00 38.49 5.03
836 877 1.198637 AGAGCTTCATGTTTTGCGAGC 59.801 47.619 0.00 0.00 35.62 5.03
837 878 2.473540 CGAGAGCTTCATGTTTTGCGAG 60.474 50.000 0.00 0.00 0.00 5.03
838 879 1.460743 CGAGAGCTTCATGTTTTGCGA 59.539 47.619 0.00 0.00 0.00 5.10
839 880 1.460743 TCGAGAGCTTCATGTTTTGCG 59.539 47.619 0.00 0.00 0.00 4.85
840 881 3.754188 ATCGAGAGCTTCATGTTTTGC 57.246 42.857 0.00 0.00 0.00 3.68
841 882 5.692814 TCAAATCGAGAGCTTCATGTTTTG 58.307 37.500 0.00 0.00 0.00 2.44
842 883 5.947228 TCAAATCGAGAGCTTCATGTTTT 57.053 34.783 0.00 0.00 0.00 2.43
843 884 5.947228 TTCAAATCGAGAGCTTCATGTTT 57.053 34.783 0.00 0.00 0.00 2.83
844 885 5.471456 AGTTTCAAATCGAGAGCTTCATGTT 59.529 36.000 0.00 0.00 0.00 2.71
845 886 4.999950 AGTTTCAAATCGAGAGCTTCATGT 59.000 37.500 0.00 0.00 0.00 3.21
846 887 5.542616 AGTTTCAAATCGAGAGCTTCATG 57.457 39.130 0.00 0.00 0.00 3.07
847 888 7.044181 TCATAGTTTCAAATCGAGAGCTTCAT 58.956 34.615 0.00 0.00 0.00 2.57
848 889 6.398095 TCATAGTTTCAAATCGAGAGCTTCA 58.602 36.000 0.00 0.00 0.00 3.02
849 890 6.509358 GCTCATAGTTTCAAATCGAGAGCTTC 60.509 42.308 0.00 0.00 41.84 3.86
850 891 5.293079 GCTCATAGTTTCAAATCGAGAGCTT 59.707 40.000 0.00 0.00 41.84 3.74
851 892 4.808364 GCTCATAGTTTCAAATCGAGAGCT 59.192 41.667 0.00 0.00 41.84 4.09
852 893 4.568359 TGCTCATAGTTTCAAATCGAGAGC 59.432 41.667 0.00 0.00 44.45 4.09
853 894 5.578336 TGTGCTCATAGTTTCAAATCGAGAG 59.422 40.000 0.00 0.00 0.00 3.20
854 895 5.478407 TGTGCTCATAGTTTCAAATCGAGA 58.522 37.500 0.00 0.00 0.00 4.04
869 910 1.263217 GGACGAAACGTTTGTGCTCAT 59.737 47.619 20.10 0.00 41.37 2.90
870 911 0.653636 GGACGAAACGTTTGTGCTCA 59.346 50.000 20.10 0.00 41.37 4.26
871 912 0.041576 GGGACGAAACGTTTGTGCTC 60.042 55.000 20.10 11.50 41.37 4.26
872 913 1.441732 GGGGACGAAACGTTTGTGCT 61.442 55.000 20.10 0.00 41.37 4.40
874 915 0.306533 CTGGGGACGAAACGTTTGTG 59.693 55.000 20.10 13.01 41.37 3.33
895 937 3.383505 AGTCCGCTAGGTTTTTGCTTTTT 59.616 39.130 0.00 0.00 39.05 1.94
903 945 5.416271 TTTAGATGAGTCCGCTAGGTTTT 57.584 39.130 0.00 0.00 39.05 2.43
912 954 9.379791 AGGTAGTTTTATTTTTAGATGAGTCCG 57.620 33.333 0.00 0.00 0.00 4.79
939 981 2.170187 GCAATTTGCATATTGGTCCCCA 59.830 45.455 25.08 0.00 44.26 4.96
957 999 5.643777 GGAGAATACAGCTTTAAGAGTGCAA 59.356 40.000 0.00 0.00 0.00 4.08
965 1007 4.534500 TCAGGTGGGAGAATACAGCTTTAA 59.466 41.667 0.00 0.00 42.92 1.52
1118 1163 2.038975 CTGGGAGACGGAGGGGAA 59.961 66.667 0.00 0.00 0.00 3.97
1127 1172 0.823460 CAGGAAGAGAGCTGGGAGAC 59.177 60.000 0.00 0.00 0.00 3.36
1169 1244 2.279741 TCTGCTCGCATGTGGATAAAC 58.720 47.619 6.39 0.00 0.00 2.01
1206 1281 5.544176 TCTCAGAGTAGAAATTGGTCAAGGT 59.456 40.000 0.00 0.00 0.00 3.50
1213 1288 8.307483 TCTTGTAGTTCTCAGAGTAGAAATTGG 58.693 37.037 0.00 0.00 37.24 3.16
1217 1292 6.717540 AGCTCTTGTAGTTCTCAGAGTAGAAA 59.282 38.462 0.00 0.00 37.24 2.52
1226 1301 1.202582 GCCGAGCTCTTGTAGTTCTCA 59.797 52.381 12.85 0.00 33.49 3.27
1517 1616 6.017852 GGATTCATAAACCTAACAGCTAGCAC 60.018 42.308 18.83 0.00 0.00 4.40
1548 1647 3.582780 GGCAAAGAGAAAAAGCATCAGG 58.417 45.455 0.00 0.00 0.00 3.86
1633 1771 3.469629 CGTGACTTACAATGCAGAAACG 58.530 45.455 0.00 0.00 0.00 3.60
1980 3441 9.847706 TTTTACGCAATTTAGCAAGAATATCAA 57.152 25.926 0.00 0.00 0.00 2.57
1983 3446 9.632807 TGTTTTTACGCAATTTAGCAAGAATAT 57.367 25.926 0.00 0.00 0.00 1.28
2004 3467 8.396272 AGCAACAGTTAGATAGAATGTGTTTT 57.604 30.769 0.00 0.00 0.00 2.43
2026 3489 1.397672 CCAGCTAGCTAGACTGAGCA 58.602 55.000 30.51 0.00 45.43 4.26
2028 3491 1.397672 TGCCAGCTAGCTAGACTGAG 58.602 55.000 30.51 23.96 32.75 3.35
2033 3496 1.482593 GAACCTTGCCAGCTAGCTAGA 59.517 52.381 25.15 0.66 37.75 2.43
2040 3503 0.538287 GGACTTGAACCTTGCCAGCT 60.538 55.000 0.00 0.00 0.00 4.24
2042 3505 0.178992 TGGGACTTGAACCTTGCCAG 60.179 55.000 0.00 0.00 0.00 4.85
2045 3508 1.815003 CAGATGGGACTTGAACCTTGC 59.185 52.381 0.00 0.00 0.00 4.01
2119 3582 5.414789 TGCAACTACCATAGCTAACAGAA 57.585 39.130 0.00 0.00 0.00 3.02
2151 3618 5.360714 GGGGATTCATACTTGCTGAAAATCA 59.639 40.000 0.00 0.00 36.30 2.57
2173 3640 5.324832 AACCATACATAGGAATGAAGGGG 57.675 43.478 0.00 0.00 36.54 4.79
2268 3736 2.640316 CGGAAGGCTTATTAAGGGCT 57.360 50.000 0.00 1.79 40.06 5.19
2311 3779 2.047465 AGTGCGCTGCTGGAAGAG 60.047 61.111 9.73 0.00 34.07 2.85
2340 3808 3.711704 TCTTCCACTCTTTCCACTGAAGT 59.288 43.478 0.00 0.00 31.90 3.01
2468 3936 1.902508 CTAGGCCTCAACTGGTCAGAA 59.097 52.381 9.68 0.00 33.35 3.02
2514 3982 5.422214 TTCTCCTAGATTCCTGGTTTCAC 57.578 43.478 0.00 0.00 0.00 3.18
2579 4048 5.410746 TCATTGCAGAAGAGCTCTTTGTTAG 59.589 40.000 29.02 17.36 36.11 2.34
2591 4060 2.865119 TGAGGCTTCATTGCAGAAGA 57.135 45.000 17.40 0.70 46.18 2.87
2658 4127 0.173255 GGCAATGCAGCGGTAACAAT 59.827 50.000 7.79 0.00 34.64 2.71
2688 4157 4.314121 GTCATCAGCAAGAGTGAAGACTT 58.686 43.478 2.16 0.00 38.83 3.01
2689 4158 3.306641 GGTCATCAGCAAGAGTGAAGACT 60.307 47.826 7.81 0.00 40.73 3.24
2691 4160 2.902486 AGGTCATCAGCAAGAGTGAAGA 59.098 45.455 0.00 0.00 0.00 2.87
2692 4161 3.001414 CAGGTCATCAGCAAGAGTGAAG 58.999 50.000 0.00 0.00 0.00 3.02
2693 4162 2.873245 GCAGGTCATCAGCAAGAGTGAA 60.873 50.000 0.00 0.00 0.00 3.18
2694 4163 1.338484 GCAGGTCATCAGCAAGAGTGA 60.338 52.381 0.00 0.00 0.00 3.41
2695 4164 1.085091 GCAGGTCATCAGCAAGAGTG 58.915 55.000 0.00 0.00 0.00 3.51
2718 4187 4.645588 AGCAGTAGACCTAGTAACATGGAC 59.354 45.833 0.00 0.00 0.00 4.02
2856 4327 3.447586 ACTGGTGTGCTAACGATACTGAT 59.552 43.478 0.00 0.00 0.00 2.90
2857 4328 2.823747 ACTGGTGTGCTAACGATACTGA 59.176 45.455 0.00 0.00 0.00 3.41
3062 4538 1.126488 TTGGTTTGCAAGAATGGCCA 58.874 45.000 8.56 8.56 29.78 5.36
3324 4978 7.093068 TGTCTGTAAACTAATTGCCTGGATAGA 60.093 37.037 0.00 0.00 0.00 1.98
3326 4980 6.821665 GTGTCTGTAAACTAATTGCCTGGATA 59.178 38.462 0.00 0.00 0.00 2.59
3493 5149 5.066505 AGCCCTTAATTAGCGAACAGAATTG 59.933 40.000 0.00 0.00 0.00 2.32
3567 5223 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3568 5224 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3569 5225 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3570 5226 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3571 5227 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3572 5228 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3573 5229 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3574 5230 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
3578 5234 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3579 5235 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3580 5236 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3581 5237 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3582 5238 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3583 5239 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3584 5240 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3585 5241 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3586 5242 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3587 5243 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3588 5244 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3589 5245 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3590 5246 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3591 5247 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3592 5248 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3593 5249 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3605 5261 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
3606 5262 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
3607 5263 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
3608 5264 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
3609 5265 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
3610 5266 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
3611 5267 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
3612 5268 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
3613 5269 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
3614 5270 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
3615 5271 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3616 5272 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3617 5273 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3618 5274 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3619 5275 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3620 5276 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3621 5277 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3622 5278 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3623 5279 3.636153 ATAAGAGGCTGTTTCCAGGAC 57.364 47.619 0.90 0.00 39.22 3.85
3624 5280 4.620723 TCTATAAGAGGCTGTTTCCAGGA 58.379 43.478 0.90 0.00 39.22 3.86
3625 5281 5.359194 TTCTATAAGAGGCTGTTTCCAGG 57.641 43.478 0.90 0.00 39.22 4.45
3626 5282 6.825721 ACATTTCTATAAGAGGCTGTTTCCAG 59.174 38.462 0.90 0.00 41.91 3.86
3627 5283 6.721318 ACATTTCTATAAGAGGCTGTTTCCA 58.279 36.000 0.90 0.00 0.00 3.53
3628 5284 7.442666 CCTACATTTCTATAAGAGGCTGTTTCC 59.557 40.741 0.90 0.00 0.00 3.13
3629 5285 7.442666 CCCTACATTTCTATAAGAGGCTGTTTC 59.557 40.741 0.90 0.00 0.00 2.78
3630 5286 7.127339 TCCCTACATTTCTATAAGAGGCTGTTT 59.873 37.037 0.90 0.00 0.00 2.83
3631 5287 6.615726 TCCCTACATTTCTATAAGAGGCTGTT 59.384 38.462 1.39 1.39 0.00 3.16
3632 5288 6.143915 TCCCTACATTTCTATAAGAGGCTGT 58.856 40.000 0.00 0.00 0.00 4.40
3633 5289 6.672266 TCCCTACATTTCTATAAGAGGCTG 57.328 41.667 0.00 0.00 0.00 4.85
3634 5290 7.202139 CCTTTCCCTACATTTCTATAAGAGGCT 60.202 40.741 0.00 0.00 0.00 4.58
3635 5291 6.937465 CCTTTCCCTACATTTCTATAAGAGGC 59.063 42.308 0.00 0.00 0.00 4.70
3636 5292 6.937465 GCCTTTCCCTACATTTCTATAAGAGG 59.063 42.308 0.00 0.00 0.00 3.69
3637 5293 7.659390 CAGCCTTTCCCTACATTTCTATAAGAG 59.341 40.741 0.00 0.00 0.00 2.85
3638 5294 7.509546 CAGCCTTTCCCTACATTTCTATAAGA 58.490 38.462 0.00 0.00 0.00 2.10
3639 5295 6.205658 GCAGCCTTTCCCTACATTTCTATAAG 59.794 42.308 0.00 0.00 0.00 1.73
3640 5296 6.062095 GCAGCCTTTCCCTACATTTCTATAA 58.938 40.000 0.00 0.00 0.00 0.98
3641 5297 5.621193 GCAGCCTTTCCCTACATTTCTATA 58.379 41.667 0.00 0.00 0.00 1.31
3642 5298 4.464947 GCAGCCTTTCCCTACATTTCTAT 58.535 43.478 0.00 0.00 0.00 1.98
3643 5299 3.681594 CGCAGCCTTTCCCTACATTTCTA 60.682 47.826 0.00 0.00 0.00 2.10
3644 5300 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3645 5301 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3646 5302 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3647 5303 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3648 5304 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3649 5305 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3650 5306 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3651 5307 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3652 5308 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3653 5309 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3654 5310 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3655 5311 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3656 5312 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3657 5313 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3658 5314 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3659 5315 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3660 5316 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3661 5317 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3662 5318 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3663 5319 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3664 5320 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3674 5330 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3675 5331 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3676 5332 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3677 5333 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3678 5334 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3679 5335 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3680 5336 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3681 5337 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
3682 5338 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
3683 5339 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3684 5340 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3685 5341 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3686 5342 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3687 5343 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3688 5344 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3689 5345 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3690 5346 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3691 5347 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3692 5348 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3704 5360 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3707 5363 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3708 5364 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3709 5365 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3710 5366 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3716 5372 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
3717 5373 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
3718 5374 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
3719 5375 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
3720 5376 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3752 5408 2.846652 GCCATCTCCAGCATGCAGC 61.847 63.158 21.98 5.42 46.19 5.25
3753 5409 1.453197 TGCCATCTCCAGCATGCAG 60.453 57.895 21.98 12.49 33.08 4.41
3754 5410 2.678470 TGCCATCTCCAGCATGCA 59.322 55.556 21.98 0.00 33.08 3.96
3758 5414 4.828939 CCTTAATAAATGCCATCTCCAGCA 59.171 41.667 0.00 0.00 44.45 4.41
3759 5415 4.321527 GCCTTAATAAATGCCATCTCCAGC 60.322 45.833 0.00 0.00 0.00 4.85
3760 5416 4.828939 TGCCTTAATAAATGCCATCTCCAG 59.171 41.667 0.00 0.00 0.00 3.86
3761 5417 4.802307 TGCCTTAATAAATGCCATCTCCA 58.198 39.130 0.00 0.00 0.00 3.86
3921 5577 3.615224 ATTCATGCAGGCGGAATTTTT 57.385 38.095 0.00 0.00 0.00 1.94
3922 5578 3.491447 GCTATTCATGCAGGCGGAATTTT 60.491 43.478 13.68 0.00 33.59 1.82
3973 5631 1.577328 AACTGGAAGCGTTGGCATCG 61.577 55.000 13.36 13.36 43.41 3.84
3974 5632 0.169009 GAACTGGAAGCGTTGGCATC 59.831 55.000 0.00 0.00 43.41 3.91
3975 5633 1.244019 GGAACTGGAAGCGTTGGCAT 61.244 55.000 0.00 0.00 43.41 4.40
3976 5634 1.896660 GGAACTGGAAGCGTTGGCA 60.897 57.895 0.00 0.00 43.41 4.92
3977 5635 1.856265 CTGGAACTGGAAGCGTTGGC 61.856 60.000 0.00 0.00 37.60 4.52
3978 5636 1.856265 GCTGGAACTGGAAGCGTTGG 61.856 60.000 0.00 0.00 37.60 3.77
3979 5637 1.165907 TGCTGGAACTGGAAGCGTTG 61.166 55.000 0.00 0.00 39.88 4.10
3980 5638 0.886490 CTGCTGGAACTGGAAGCGTT 60.886 55.000 0.00 0.00 39.88 4.84
3981 5639 1.302033 CTGCTGGAACTGGAAGCGT 60.302 57.895 0.00 0.00 39.88 5.07
3982 5640 2.684843 GCTGCTGGAACTGGAAGCG 61.685 63.158 0.00 0.00 39.88 4.68
3983 5641 2.684843 CGCTGCTGGAACTGGAAGC 61.685 63.158 0.00 0.00 37.60 3.86
3984 5642 0.392193 ATCGCTGCTGGAACTGGAAG 60.392 55.000 0.00 0.00 42.29 3.46
3985 5643 0.674581 CATCGCTGCTGGAACTGGAA 60.675 55.000 0.00 0.00 0.00 3.53
3986 5644 1.078918 CATCGCTGCTGGAACTGGA 60.079 57.895 0.00 0.00 0.00 3.86
3987 5645 2.758089 GCATCGCTGCTGGAACTGG 61.758 63.158 3.51 0.00 45.32 4.00
3988 5646 2.789917 GCATCGCTGCTGGAACTG 59.210 61.111 3.51 0.00 45.32 3.16
4030 5688 2.028130 ACGGTCATTTTGCCAGTTTCA 58.972 42.857 0.00 0.00 0.00 2.69
4299 5965 5.973565 GTCAAGGAAAAGAAACAGTGACATG 59.026 40.000 0.00 0.00 35.37 3.21
4500 6170 6.210185 GGATCTGCCATGCCTTTATTTAGATT 59.790 38.462 0.00 0.00 36.34 2.40
4501 6171 5.713861 GGATCTGCCATGCCTTTATTTAGAT 59.286 40.000 0.00 0.00 36.34 1.98
4643 6315 2.287129 ACCCGTCGTATGCAAAACAAAC 60.287 45.455 0.00 0.00 0.00 2.93
4647 6319 4.093850 AGAATTACCCGTCGTATGCAAAAC 59.906 41.667 0.00 0.00 0.00 2.43
4657 6329 5.796350 AAAGATGAAAGAATTACCCGTCG 57.204 39.130 0.00 0.00 0.00 5.12
4755 6640 5.622346 AAAGGCCTCTCATAACCTCTAAG 57.378 43.478 5.23 0.00 0.00 2.18
4909 6794 3.071747 AGCTCTTAAGGCCCATAAGCTAC 59.928 47.826 17.27 10.76 31.77 3.58
4929 6814 8.937634 ATTCATTCCTCATTCAATAAAACAGC 57.062 30.769 0.00 0.00 0.00 4.40
5088 6973 9.535170 ACAGTAGCATATACAGTTATACAGGAT 57.465 33.333 0.00 0.00 0.00 3.24
5113 6998 9.997482 TTGTTCAGTCTAACAATCTAACAAAAC 57.003 29.630 0.00 0.00 42.78 2.43
5280 7174 1.676678 TAGATCTGCGGTCACCTGCC 61.677 60.000 5.18 0.00 0.00 4.85
5739 7646 6.352016 TCTGCAAAGCCAACCATAAAAATA 57.648 33.333 0.00 0.00 0.00 1.40
5746 7654 0.248289 GCATCTGCAAAGCCAACCAT 59.752 50.000 0.00 0.00 41.59 3.55
5862 7770 4.261072 GCTCAACTCATTGGATGCACATAG 60.261 45.833 0.00 0.00 36.39 2.23
5874 7782 6.471146 ACTCTTACTGATTGCTCAACTCATT 58.529 36.000 0.00 0.00 0.00 2.57
5913 7822 0.387202 CCATCTCCACAGGCTCGTAG 59.613 60.000 0.00 0.00 0.00 3.51
5917 7827 1.828768 CCTCCATCTCCACAGGCTC 59.171 63.158 0.00 0.00 0.00 4.70
5953 7863 2.028112 ACACTCAACACCTCATATGCGT 60.028 45.455 0.00 0.00 0.00 5.24
6033 7943 7.968405 GTGACCATTTAAACTCATCAATACCAC 59.032 37.037 0.00 0.00 0.00 4.16
6042 7952 5.473504 GTGTCCAGTGACCATTTAAACTCAT 59.526 40.000 0.00 0.00 41.01 2.90
6085 8020 9.408069 CTGAAAAGTTTACTCTGTTCTACGTAT 57.592 33.333 0.00 0.00 34.00 3.06
6086 8021 7.864379 CCTGAAAAGTTTACTCTGTTCTACGTA 59.136 37.037 0.00 0.00 34.00 3.57
6087 8022 6.700520 CCTGAAAAGTTTACTCTGTTCTACGT 59.299 38.462 0.00 0.00 34.00 3.57
6088 8023 6.700520 ACCTGAAAAGTTTACTCTGTTCTACG 59.299 38.462 0.00 0.00 34.00 3.51
6140 8075 2.565841 CAGCTAGTACATCCTTTGGCC 58.434 52.381 0.00 0.00 0.00 5.36
6157 8092 3.061161 CACAAACAAACACAGAAAGCAGC 59.939 43.478 0.00 0.00 0.00 5.25
6163 8098 9.862371 ATATAAACAACACAAACAAACACAGAA 57.138 25.926 0.00 0.00 0.00 3.02
6165 8100 9.295214 TCATATAAACAACACAAACAAACACAG 57.705 29.630 0.00 0.00 0.00 3.66
6166 8101 9.077674 GTCATATAAACAACACAAACAAACACA 57.922 29.630 0.00 0.00 0.00 3.72
6171 8126 7.260558 TCGGTCATATAAACAACACAAACAA 57.739 32.000 0.00 0.00 0.00 2.83
6176 8133 5.763698 TGGTTTCGGTCATATAAACAACACA 59.236 36.000 0.00 0.00 35.33 3.72
6184 8141 6.809196 GTGCAAAATTGGTTTCGGTCATATAA 59.191 34.615 0.00 0.00 0.00 0.98
6230 8187 8.922931 TGCAGATGATAATCTTAGCCAAAATA 57.077 30.769 0.00 0.00 0.00 1.40
6280 8319 6.369065 ACTTGTCGGAGAAATGAACATAACTC 59.631 38.462 0.00 0.00 39.69 3.01
6281 8320 6.231211 ACTTGTCGGAGAAATGAACATAACT 58.769 36.000 0.00 0.00 39.69 2.24
6282 8321 6.481954 ACTTGTCGGAGAAATGAACATAAC 57.518 37.500 0.00 0.00 39.69 1.89
6283 8322 8.786826 AATACTTGTCGGAGAAATGAACATAA 57.213 30.769 0.00 0.00 39.69 1.90
6284 8323 8.786826 AAATACTTGTCGGAGAAATGAACATA 57.213 30.769 0.00 0.00 39.69 2.29
6285 8324 7.687941 AAATACTTGTCGGAGAAATGAACAT 57.312 32.000 0.00 0.00 39.69 2.71
6286 8325 7.504924 AAAATACTTGTCGGAGAAATGAACA 57.495 32.000 0.00 0.00 39.69 3.18
6287 8326 6.736853 CGAAAATACTTGTCGGAGAAATGAAC 59.263 38.462 0.00 0.00 39.69 3.18
6288 8327 6.827641 CGAAAATACTTGTCGGAGAAATGAA 58.172 36.000 0.00 0.00 39.69 2.57
6289 8328 6.403333 CGAAAATACTTGTCGGAGAAATGA 57.597 37.500 0.00 0.00 39.69 2.57
6298 8337 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
6299 8338 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
6300 8339 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
6301 8340 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
6302 8341 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
6303 8342 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
6304 8343 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
6305 8344 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
6306 8345 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
6307 8346 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
6308 8347 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
6309 8348 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
6310 8349 0.467384 CTAGTACTCCCTCCGTCCGA 59.533 60.000 0.00 0.00 0.00 4.55
6311 8350 0.179936 ACTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
6312 8351 3.786368 ATACTAGTACTCCCTCCGTCC 57.214 52.381 4.31 0.00 0.00 4.79
6313 8352 4.071423 GGAATACTAGTACTCCCTCCGTC 58.929 52.174 17.89 0.00 0.00 4.79
6314 8353 3.495806 CGGAATACTAGTACTCCCTCCGT 60.496 52.174 21.65 0.00 39.72 4.69
6315 8354 3.072944 CGGAATACTAGTACTCCCTCCG 58.927 54.545 21.65 19.28 38.69 4.63
6316 8355 4.363991 TCGGAATACTAGTACTCCCTCC 57.636 50.000 21.65 13.30 28.08 4.30
6317 8356 4.518590 GGTTCGGAATACTAGTACTCCCTC 59.481 50.000 21.65 12.98 28.08 4.30
6318 8357 4.079558 TGGTTCGGAATACTAGTACTCCCT 60.080 45.833 21.65 0.00 28.08 4.20
6319 8358 4.210331 TGGTTCGGAATACTAGTACTCCC 58.790 47.826 21.65 13.77 28.08 4.30
6320 8359 5.359292 ACTTGGTTCGGAATACTAGTACTCC 59.641 44.000 18.56 18.56 0.00 3.85
6321 8360 6.448207 ACTTGGTTCGGAATACTAGTACTC 57.552 41.667 4.31 3.42 0.00 2.59
6322 8361 6.847421 AACTTGGTTCGGAATACTAGTACT 57.153 37.500 4.31 0.00 0.00 2.73
6391 8438 0.326618 ATGTAGGGCTACTGGGCTGT 60.327 55.000 0.00 0.00 40.65 4.40
6522 8571 2.753452 GTCATAACTCCGTCACTCTCCA 59.247 50.000 0.00 0.00 0.00 3.86
6524 8573 2.223294 CGGTCATAACTCCGTCACTCTC 60.223 54.545 0.00 0.00 41.58 3.20
6525 8574 1.743958 CGGTCATAACTCCGTCACTCT 59.256 52.381 0.00 0.00 41.58 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.