Multiple sequence alignment - TraesCS4B01G195900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G195900 chr4B 100.000 6035 0 0 1 6035 422035573 422029539 0.000000e+00 11145.0
1 TraesCS4B01G195900 chr4B 92.000 150 7 5 4905 5052 99436916 99437062 8.410000e-49 206.0
2 TraesCS4B01G195900 chr4B 100.000 91 0 0 6308 6398 422029266 422029176 1.100000e-37 169.0
3 TraesCS4B01G195900 chr4B 96.386 83 1 2 6308 6390 144338997 144339077 1.120000e-27 135.0
4 TraesCS4B01G195900 chr4B 92.308 91 5 2 6308 6398 144730152 144730240 1.870000e-25 128.0
5 TraesCS4B01G195900 chr4B 95.385 65 2 1 5459 5522 422030177 422030113 1.130000e-17 102.0
6 TraesCS4B01G195900 chr4D 98.221 4385 55 10 532 4907 340553422 340549052 0.000000e+00 7644.0
7 TraesCS4B01G195900 chr4D 97.320 597 13 3 5089 5683 340548972 340548377 0.000000e+00 1011.0
8 TraesCS4B01G195900 chr4D 94.509 346 18 1 5691 6035 340535958 340535613 3.400000e-147 532.0
9 TraesCS4B01G195900 chr4D 91.398 372 14 11 42 397 340553870 340553501 1.600000e-135 494.0
10 TraesCS4B01G195900 chr4D 97.727 88 1 1 433 520 340553491 340553405 4.000000e-32 150.0
11 TraesCS4B01G195900 chr4D 96.552 58 2 0 5030 5087 340549054 340548997 5.280000e-16 97.1
12 TraesCS4B01G195900 chr4A 97.350 2151 34 3 2699 4827 127484913 127487062 0.000000e+00 3635.0
13 TraesCS4B01G195900 chr4A 96.619 2189 70 4 529 2715 127482714 127484900 0.000000e+00 3629.0
14 TraesCS4B01G195900 chr4A 95.970 1985 72 8 735 2715 127289830 127287850 0.000000e+00 3216.0
15 TraesCS4B01G195900 chr4A 95.879 1189 25 4 3021 4186 127287257 127286070 0.000000e+00 1903.0
16 TraesCS4B01G195900 chr4A 97.390 728 17 2 4180 4907 127282245 127281520 0.000000e+00 1238.0
17 TraesCS4B01G195900 chr4A 94.178 687 28 8 5089 5764 127281440 127280755 0.000000e+00 1037.0
18 TraesCS4B01G195900 chr4A 94.061 623 11 14 5030 5627 127487105 127487726 0.000000e+00 922.0
19 TraesCS4B01G195900 chr4A 91.584 404 23 6 5641 6035 127489179 127489580 1.210000e-151 547.0
20 TraesCS4B01G195900 chr4A 89.058 329 18 5 86 397 127330655 127330328 6.010000e-105 392.0
21 TraesCS4B01G195900 chr4A 88.715 319 27 5 86 397 127482322 127482638 1.300000e-101 381.0
22 TraesCS4B01G195900 chr4A 96.226 212 7 1 532 743 127330249 127330039 4.750000e-91 346.0
23 TraesCS4B01G195900 chr4A 84.015 269 16 7 5769 6035 127280654 127280411 3.860000e-57 233.0
24 TraesCS4B01G195900 chr4A 96.923 130 4 0 4905 5034 477881756 477881885 1.080000e-52 219.0
25 TraesCS4B01G195900 chr4A 95.181 83 2 2 441 521 127482656 127482738 5.210000e-26 130.0
26 TraesCS4B01G195900 chr4A 93.182 88 5 1 433 520 127330318 127330232 1.870000e-25 128.0
27 TraesCS4B01G195900 chr4A 95.385 65 2 1 5459 5522 127487496 127487560 1.130000e-17 102.0
28 TraesCS4B01G195900 chr4A 96.552 58 2 0 5030 5087 127281522 127281465 5.280000e-16 97.1
29 TraesCS4B01G195900 chr4A 96.552 58 1 1 44 101 127482233 127482289 1.900000e-15 95.3
30 TraesCS4B01G195900 chr4A 87.654 81 8 2 6308 6388 2275440 2275518 6.830000e-15 93.5
31 TraesCS4B01G195900 chr3B 86.825 1260 136 13 1838 3096 782482995 782481765 0.000000e+00 1380.0
32 TraesCS4B01G195900 chr3B 87.234 1222 140 12 1944 3155 781838274 781837059 0.000000e+00 1378.0
33 TraesCS4B01G195900 chr3B 87.752 1192 131 13 1946 3130 782342894 782341711 0.000000e+00 1378.0
34 TraesCS4B01G195900 chr3B 89.010 1010 95 11 3861 4859 782113534 782112530 0.000000e+00 1236.0
35 TraesCS4B01G195900 chr3B 87.160 1028 114 13 3856 4873 781837034 781836015 0.000000e+00 1151.0
36 TraesCS4B01G195900 chr3B 86.271 1078 112 22 3861 4907 781553481 781552409 0.000000e+00 1138.0
37 TraesCS4B01G195900 chr3B 86.868 1028 114 15 3852 4867 782341675 782340657 0.000000e+00 1131.0
38 TraesCS4B01G195900 chr3B 85.668 935 87 15 940 1845 782484530 782483614 0.000000e+00 941.0
39 TraesCS4B01G195900 chr3B 85.531 933 82 16 938 1835 781854192 781853278 0.000000e+00 926.0
40 TraesCS4B01G195900 chr3B 81.998 911 101 25 934 1830 782343938 782343077 0.000000e+00 715.0
41 TraesCS4B01G195900 chr3B 85.600 500 52 8 1360 1845 782115813 782115320 2.060000e-139 507.0
42 TraesCS4B01G195900 chr3B 91.667 264 18 3 934 1196 782116296 782116036 4.710000e-96 363.0
43 TraesCS4B01G195900 chr3B 86.920 237 25 3 5212 5447 781835868 781835637 1.770000e-65 261.0
44 TraesCS4B01G195900 chr3B 85.141 249 27 6 5199 5447 781552284 781552046 4.950000e-61 246.0
45 TraesCS4B01G195900 chr3B 93.056 144 9 1 4890 5033 593869149 593869291 6.500000e-50 209.0
46 TraesCS4B01G195900 chr3B 87.571 177 12 8 5514 5680 781669617 781669441 5.060000e-46 196.0
47 TraesCS4B01G195900 chr3B 83.448 145 16 7 774 912 781854444 781854302 1.870000e-25 128.0
48 TraesCS4B01G195900 chr3B 80.571 175 22 5 706 875 782116561 782116394 2.420000e-24 124.0
49 TraesCS4B01G195900 chr3B 89.011 91 7 3 6308 6398 125893571 125893484 6.780000e-20 110.0
50 TraesCS4B01G195900 chr3B 85.870 92 10 3 6308 6398 470378168 470378079 1.900000e-15 95.3
51 TraesCS4B01G195900 chr3B 97.500 40 1 0 395 434 17576224 17576263 1.150000e-07 69.4
52 TraesCS4B01G195900 chr3D 86.683 1224 143 17 1945 3160 585651581 585652792 0.000000e+00 1339.0
53 TraesCS4B01G195900 chr3D 86.300 1219 153 13 1944 3157 585632396 585633605 0.000000e+00 1314.0
54 TraesCS4B01G195900 chr3D 89.215 1057 100 9 3861 4907 585711332 585710280 0.000000e+00 1308.0
55 TraesCS4B01G195900 chr3D 86.580 1155 121 17 1838 2988 585712615 585711491 0.000000e+00 1243.0
56 TraesCS4B01G195900 chr3D 86.479 1028 120 14 3856 4873 585433069 585432051 0.000000e+00 1110.0
57 TraesCS4B01G195900 chr3D 85.894 1035 119 19 3856 4873 585652811 585653835 0.000000e+00 1077.0
58 TraesCS4B01G195900 chr3D 86.567 804 96 9 2361 3157 585616157 585616955 0.000000e+00 876.0
59 TraesCS4B01G195900 chr3D 80.867 1176 153 36 705 1829 585650292 585651446 0.000000e+00 859.0
60 TraesCS4B01G195900 chr3D 86.269 721 87 8 2445 3157 585433808 585433092 0.000000e+00 773.0
61 TraesCS4B01G195900 chr3D 83.243 740 92 23 934 1656 585435240 585434516 0.000000e+00 651.0
62 TraesCS4B01G195900 chr3D 82.313 735 103 16 934 1650 585401562 585400837 4.240000e-171 612.0
63 TraesCS4B01G195900 chr3D 87.318 481 44 8 1360 1829 585713576 585713102 9.440000e-148 534.0
64 TraesCS4B01G195900 chr3D 83.904 584 67 11 1257 1830 585615140 585615706 3.400000e-147 532.0
65 TraesCS4B01G195900 chr3D 88.206 407 35 4 1394 1791 585914535 585914133 2.090000e-129 473.0
66 TraesCS4B01G195900 chr3D 85.644 404 44 7 934 1327 585713977 585713578 4.620000e-111 412.0
67 TraesCS4B01G195900 chr3D 88.608 237 21 3 5212 5447 585653971 585654202 3.780000e-72 283.0
68 TraesCS4B01G195900 chr3D 88.186 237 22 3 5212 5447 585431904 585431673 1.760000e-70 278.0
69 TraesCS4B01G195900 chr3D 85.141 249 30 4 5199 5447 585710155 585709914 1.380000e-61 248.0
70 TraesCS4B01G195900 chr3D 98.450 129 2 0 4905 5033 313286876 313287004 1.790000e-55 228.0
71 TraesCS4B01G195900 chr3D 87.293 181 15 6 5508 5680 585618706 585618886 3.910000e-47 200.0
72 TraesCS4B01G195900 chr3D 87.293 181 15 6 5508 5680 585654226 585654406 3.910000e-47 200.0
73 TraesCS4B01G195900 chr3D 87.222 180 12 9 5511 5679 585467324 585467145 1.820000e-45 195.0
74 TraesCS4B01G195900 chr3D 82.243 214 19 10 680 875 585613239 585613451 3.970000e-37 167.0
75 TraesCS4B01G195900 chr3D 83.422 187 19 7 700 875 585631087 585631272 5.130000e-36 163.0
76 TraesCS4B01G195900 chr3D 81.714 175 20 5 706 875 585714242 585714075 1.120000e-27 135.0
77 TraesCS4B01G195900 chr3D 82.353 153 15 8 770 912 585915172 585915022 8.710000e-24 122.0
78 TraesCS4B01G195900 chr3D 86.250 80 8 1 727 803 585478046 585477967 4.110000e-12 84.2
79 TraesCS4B01G195900 chrUn 86.692 804 95 9 2361 3157 358609519 358610317 0.000000e+00 881.0
80 TraesCS4B01G195900 chrUn 96.543 405 13 1 1403 1806 478229411 478229815 0.000000e+00 669.0
81 TraesCS4B01G195900 chrUn 83.904 584 67 11 1257 1830 358608502 358609068 3.400000e-147 532.0
82 TraesCS4B01G195900 chrUn 88.532 218 19 3 5213 5429 300191702 300191914 6.360000e-65 259.0
83 TraesCS4B01G195900 chrUn 87.293 181 15 6 5508 5680 300191946 300192126 3.910000e-47 200.0
84 TraesCS4B01G195900 chrUn 87.293 181 15 6 5508 5680 321265384 321265564 3.910000e-47 200.0
85 TraesCS4B01G195900 chrUn 97.436 39 1 0 395 433 390187794 390187756 4.140000e-07 67.6
86 TraesCS4B01G195900 chrUn 97.436 39 1 0 395 433 460270413 460270451 4.140000e-07 67.6
87 TraesCS4B01G195900 chr2D 97.656 128 3 0 4905 5032 46912946 46913073 3.000000e-53 220.0
88 TraesCS4B01G195900 chr2D 96.269 134 4 1 4901 5034 622315655 622315787 1.080000e-52 219.0
89 TraesCS4B01G195900 chr2B 96.296 135 4 1 4905 5039 603917335 603917202 3.000000e-53 220.0
90 TraesCS4B01G195900 chr2B 92.053 151 8 2 4897 5043 525520823 525520973 6.500000e-50 209.0
91 TraesCS4B01G195900 chr3A 92.053 151 9 3 4898 5045 52198989 52198839 6.500000e-50 209.0
92 TraesCS4B01G195900 chr3A 97.561 41 1 0 395 435 523146478 523146518 3.200000e-08 71.3
93 TraesCS4B01G195900 chr7D 93.407 91 5 1 6308 6398 7797387 7797298 4.020000e-27 134.0
94 TraesCS4B01G195900 chr1B 90.110 91 7 1 6308 6398 586497258 586497346 4.050000e-22 117.0
95 TraesCS4B01G195900 chr1B 88.462 52 5 1 395 446 645962668 645962718 1.930000e-05 62.1
96 TraesCS4B01G195900 chr7B 91.892 74 3 3 6308 6380 535243980 535244051 4.080000e-17 100.0
97 TraesCS4B01G195900 chr6B 87.654 81 8 2 6311 6391 68902333 68902255 6.830000e-15 93.5
98 TraesCS4B01G195900 chr5A 88.406 69 8 0 3346 3414 700438329 700438397 4.110000e-12 84.2
99 TraesCS4B01G195900 chr5A 97.500 40 1 0 395 434 13108662 13108701 1.150000e-07 69.4
100 TraesCS4B01G195900 chr5B 100.000 38 0 0 395 432 322866259 322866296 3.200000e-08 71.3
101 TraesCS4B01G195900 chr5B 100.000 37 0 0 395 431 20822049 20822085 1.150000e-07 69.4
102 TraesCS4B01G195900 chr1A 97.436 39 1 0 395 433 37481947 37481909 4.140000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G195900 chr4B 422029176 422035573 6397 True 5657.000000 11145 100.000000 1 6398 2 chr4B.!!$R2 6397
1 TraesCS4B01G195900 chr4D 340548377 340553870 5493 True 1879.220000 7644 96.243600 42 5683 5 chr4D.!!$R2 5641
2 TraesCS4B01G195900 chr4A 127280411 127289830 9419 True 1287.350000 3216 93.997333 735 6035 6 chr4A.!!$R1 5300
3 TraesCS4B01G195900 chr4A 127482233 127489580 7347 False 1180.162500 3635 94.430875 44 6035 8 chr4A.!!$F3 5991
4 TraesCS4B01G195900 chr4A 127330039 127330655 616 True 288.666667 392 92.822000 86 743 3 chr4A.!!$R2 657
5 TraesCS4B01G195900 chr3B 782481765 782484530 2765 True 1160.500000 1380 86.246500 940 3096 2 chr3B.!!$R9 2156
6 TraesCS4B01G195900 chr3B 782340657 782343938 3281 True 1074.666667 1378 85.539333 934 4867 3 chr3B.!!$R8 3933
7 TraesCS4B01G195900 chr3B 781835637 781838274 2637 True 930.000000 1378 87.104667 1944 5447 3 chr3B.!!$R5 3503
8 TraesCS4B01G195900 chr3B 781552046 781553481 1435 True 692.000000 1138 85.706000 3861 5447 2 chr3B.!!$R4 1586
9 TraesCS4B01G195900 chr3B 782112530 782116561 4031 True 557.500000 1236 86.712000 706 4859 4 chr3B.!!$R7 4153
10 TraesCS4B01G195900 chr3B 781853278 781854444 1166 True 527.000000 926 84.489500 774 1835 2 chr3B.!!$R6 1061
11 TraesCS4B01G195900 chr3D 585650292 585654406 4114 False 751.600000 1339 85.869000 705 5680 5 chr3D.!!$F4 4975
12 TraesCS4B01G195900 chr3D 585631087 585633605 2518 False 738.500000 1314 84.861000 700 3157 2 chr3D.!!$F3 2457
13 TraesCS4B01G195900 chr3D 585431673 585435240 3567 True 703.000000 1110 86.044250 934 5447 4 chr3D.!!$R4 4513
14 TraesCS4B01G195900 chr3D 585709914 585714242 4328 True 646.666667 1308 85.935333 706 5447 6 chr3D.!!$R5 4741
15 TraesCS4B01G195900 chr3D 585400837 585401562 725 True 612.000000 612 82.313000 934 1650 1 chr3D.!!$R1 716
16 TraesCS4B01G195900 chr3D 585613239 585618886 5647 False 443.750000 876 85.001750 680 5680 4 chr3D.!!$F2 5000
17 TraesCS4B01G195900 chr3D 585914133 585915172 1039 True 297.500000 473 85.279500 770 1791 2 chr3D.!!$R6 1021
18 TraesCS4B01G195900 chrUn 358608502 358610317 1815 False 706.500000 881 85.298000 1257 3157 2 chrUn.!!$F5 1900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.033920 TGTCTCTCGCAGTTGCATGT 59.966 50.000 4.84 0.00 42.21 3.21 F
34 35 0.110056 CTCGCAGTTGCATGTTCACC 60.110 55.000 4.84 0.00 42.21 4.02 F
37 38 0.388659 GCAGTTGCATGTTCACCCAA 59.611 50.000 0.00 0.00 41.59 4.12 F
408 474 0.620556 ATATTATGCAGAGGCCGGGG 59.379 55.000 2.18 0.00 40.13 5.73 F
409 475 0.766674 TATTATGCAGAGGCCGGGGT 60.767 55.000 2.18 0.00 40.13 4.95 F
411 477 0.983905 TTATGCAGAGGCCGGGGTAA 60.984 55.000 2.18 0.00 40.13 2.85 F
1656 3364 1.673033 CGTCGAATCTTCCAGCAGGTT 60.673 52.381 0.00 0.00 35.89 3.50 F
3687 6710 1.059913 ACTGCTCCTGCTGGTTACTT 58.940 50.000 9.73 0.00 41.57 2.24 F
4920 12151 1.619654 TGTTACTCCCTTCGTCCGAA 58.380 50.000 1.81 1.81 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 3364 3.346426 GCCAAGAGCAGAAAAGGGA 57.654 52.632 0.00 0.0 42.97 4.20 R
1931 4332 8.056571 GTGATACTAAAACAATAGACGCATCAC 58.943 37.037 0.00 0.0 32.07 3.06 R
2691 5358 9.151471 TGCTAAAGTTCAACTAATCTACATGAC 57.849 33.333 0.00 0.0 0.00 3.06 R
2742 5438 1.002274 AACACCAAACAAGGGGGCA 59.998 52.632 0.00 0.0 35.95 5.36 R
3359 6381 2.044555 CCCGTGAGCTCGTCCACTA 61.045 63.158 9.64 0.0 0.00 2.74 R
3459 6482 3.023832 AGGGTGTCAAGGTTGTTTCTTG 58.976 45.455 0.00 0.0 41.99 3.02 R
4409 11589 1.616374 GCCCATTTTCTTTCAACGGGA 59.384 47.619 0.00 0.0 33.83 5.14 R
5008 12239 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
6365 15191 1.202651 AGCGGCTGTTGTAACTGAACT 60.203 47.619 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.958704 CCTTGTAGTATGTCTCTCGCAG 58.041 50.000 0.00 0.00 0.00 5.18
22 23 3.378742 CCTTGTAGTATGTCTCTCGCAGT 59.621 47.826 0.00 0.00 0.00 4.40
23 24 4.142359 CCTTGTAGTATGTCTCTCGCAGTT 60.142 45.833 0.00 0.00 0.00 3.16
24 25 4.357018 TGTAGTATGTCTCTCGCAGTTG 57.643 45.455 0.00 0.00 0.00 3.16
25 26 2.285827 AGTATGTCTCTCGCAGTTGC 57.714 50.000 0.00 0.00 37.78 4.17
26 27 1.546029 AGTATGTCTCTCGCAGTTGCA 59.454 47.619 4.84 0.00 42.21 4.08
27 28 2.167281 AGTATGTCTCTCGCAGTTGCAT 59.833 45.455 4.84 0.00 42.21 3.96
28 29 1.366679 ATGTCTCTCGCAGTTGCATG 58.633 50.000 4.84 0.00 42.21 4.06
29 30 0.033920 TGTCTCTCGCAGTTGCATGT 59.966 50.000 4.84 0.00 42.21 3.21
30 31 1.151668 GTCTCTCGCAGTTGCATGTT 58.848 50.000 4.84 0.00 42.21 2.71
31 32 1.127582 GTCTCTCGCAGTTGCATGTTC 59.872 52.381 4.84 0.00 42.21 3.18
32 33 1.150827 CTCTCGCAGTTGCATGTTCA 58.849 50.000 4.84 0.00 42.21 3.18
33 34 0.867746 TCTCGCAGTTGCATGTTCAC 59.132 50.000 4.84 0.00 42.21 3.18
34 35 0.110056 CTCGCAGTTGCATGTTCACC 60.110 55.000 4.84 0.00 42.21 4.02
35 36 1.081242 CGCAGTTGCATGTTCACCC 60.081 57.895 4.84 0.00 42.21 4.61
36 37 1.794151 CGCAGTTGCATGTTCACCCA 61.794 55.000 4.84 0.00 42.21 4.51
37 38 0.388659 GCAGTTGCATGTTCACCCAA 59.611 50.000 0.00 0.00 41.59 4.12
38 39 1.869342 GCAGTTGCATGTTCACCCAAC 60.869 52.381 0.00 0.00 41.59 3.77
143 192 7.116662 CCAAAGTACCAACATGATGATTGTTTG 59.883 37.037 4.25 8.61 35.18 2.93
144 193 5.713025 AGTACCAACATGATGATTGTTTGC 58.287 37.500 4.25 0.00 35.18 3.68
145 194 4.877378 ACCAACATGATGATTGTTTGCT 57.123 36.364 4.25 0.00 35.18 3.91
146 195 5.981088 ACCAACATGATGATTGTTTGCTA 57.019 34.783 4.25 0.00 35.18 3.49
147 196 6.534475 ACCAACATGATGATTGTTTGCTAT 57.466 33.333 4.25 0.00 35.18 2.97
273 339 1.128692 CATTTCTGGACGGAAGCGAAC 59.871 52.381 0.00 0.00 0.00 3.95
344 410 3.021695 GGTAATCCAAACAAGCCCCTAC 58.978 50.000 0.00 0.00 0.00 3.18
405 471 5.185454 TGGAAATATATTATGCAGAGGCCG 58.815 41.667 0.00 0.00 40.13 6.13
407 473 3.845781 ATATATTATGCAGAGGCCGGG 57.154 47.619 2.18 0.00 40.13 5.73
408 474 0.620556 ATATTATGCAGAGGCCGGGG 59.379 55.000 2.18 0.00 40.13 5.73
409 475 0.766674 TATTATGCAGAGGCCGGGGT 60.767 55.000 2.18 0.00 40.13 4.95
410 476 0.766674 ATTATGCAGAGGCCGGGGTA 60.767 55.000 2.18 0.00 40.13 3.69
411 477 0.983905 TTATGCAGAGGCCGGGGTAA 60.984 55.000 2.18 0.00 40.13 2.85
412 478 0.983905 TATGCAGAGGCCGGGGTAAA 60.984 55.000 2.18 0.00 40.13 2.01
413 479 2.437895 GCAGAGGCCGGGGTAAAC 60.438 66.667 2.18 0.00 0.00 2.01
414 480 2.271173 CAGAGGCCGGGGTAAACC 59.729 66.667 2.18 0.00 39.11 3.27
428 494 4.669206 GGTAAACCCCCTTTTCGAAAAA 57.331 40.909 22.67 8.37 0.00 1.94
518 584 8.442660 CTATTAATAGGAGATTTGGACCCTCT 57.557 38.462 13.82 0.00 0.00 3.69
519 585 7.713704 ATTAATAGGAGATTTGGACCCTCTT 57.286 36.000 0.00 0.00 0.00 2.85
520 586 7.525158 TTAATAGGAGATTTGGACCCTCTTT 57.475 36.000 0.00 0.00 0.00 2.52
521 587 5.638530 ATAGGAGATTTGGACCCTCTTTC 57.361 43.478 0.00 0.00 0.00 2.62
522 588 2.237392 AGGAGATTTGGACCCTCTTTCG 59.763 50.000 0.00 0.00 0.00 3.46
523 589 2.236395 GGAGATTTGGACCCTCTTTCGA 59.764 50.000 0.00 0.00 0.00 3.71
524 590 3.307480 GGAGATTTGGACCCTCTTTCGAA 60.307 47.826 0.00 0.00 0.00 3.71
525 591 4.324267 GAGATTTGGACCCTCTTTCGAAA 58.676 43.478 10.71 10.71 0.00 3.46
526 592 4.725490 AGATTTGGACCCTCTTTCGAAAA 58.275 39.130 12.41 2.66 0.00 2.29
527 593 5.137551 AGATTTGGACCCTCTTTCGAAAAA 58.862 37.500 12.41 0.00 0.00 1.94
718 792 2.554032 ACTAGACATTGTTGGTTGCTGC 59.446 45.455 0.00 0.00 0.00 5.25
725 799 1.985473 TGTTGGTTGCTGCTCATCTT 58.015 45.000 0.00 0.00 0.00 2.40
1254 1609 7.066284 TGCTCAAGATTTCTAGTTATTGGCTTC 59.934 37.037 0.00 0.00 0.00 3.86
1470 3167 5.801350 TTTCTCATATCTTGTTTCCAGCG 57.199 39.130 0.00 0.00 0.00 5.18
1656 3364 1.673033 CGTCGAATCTTCCAGCAGGTT 60.673 52.381 0.00 0.00 35.89 3.50
1913 4314 4.074627 TGTCGTTTGGGTTGAACTGATA 57.925 40.909 0.00 0.00 0.00 2.15
2708 5404 7.972832 AAAAACGGTCATGTAGATTAGTTGA 57.027 32.000 0.00 0.00 0.00 3.18
3359 6381 3.394836 GGCTGCCCCTCGAACTCT 61.395 66.667 7.66 0.00 0.00 3.24
3459 6482 6.785337 AGCCCTTGGTGGTATTTTTAATAC 57.215 37.500 0.00 0.00 0.00 1.89
3687 6710 1.059913 ACTGCTCCTGCTGGTTACTT 58.940 50.000 9.73 0.00 41.57 2.24
4494 11674 4.645762 TGTTTTGCACATTCAGCTGTTA 57.354 36.364 14.67 3.52 0.00 2.41
4636 11819 3.580319 AGGTGGTGCCCTGGGTTC 61.580 66.667 15.56 7.64 38.26 3.62
4785 11981 9.352191 TCTCACCTTCTAATACTACTGTATTCC 57.648 37.037 4.92 0.00 43.60 3.01
4910 12141 5.616488 TTTGCTTCGTAATTGTTACTCCC 57.384 39.130 0.00 0.00 33.98 4.30
4912 12143 4.901868 TGCTTCGTAATTGTTACTCCCTT 58.098 39.130 0.00 0.00 33.98 3.95
4913 12144 4.933400 TGCTTCGTAATTGTTACTCCCTTC 59.067 41.667 0.00 0.00 33.98 3.46
4914 12145 4.032558 GCTTCGTAATTGTTACTCCCTTCG 59.967 45.833 0.00 0.00 33.98 3.79
4915 12146 4.789012 TCGTAATTGTTACTCCCTTCGT 57.211 40.909 0.00 0.00 33.98 3.85
4916 12147 4.737054 TCGTAATTGTTACTCCCTTCGTC 58.263 43.478 0.00 0.00 33.98 4.20
4918 12149 2.667473 ATTGTTACTCCCTTCGTCCG 57.333 50.000 0.00 0.00 0.00 4.79
4920 12151 1.619654 TGTTACTCCCTTCGTCCGAA 58.380 50.000 1.81 1.81 0.00 4.30
4924 12155 4.220382 TGTTACTCCCTTCGTCCGAAAATA 59.780 41.667 3.52 0.00 33.34 1.40
4925 12156 3.242549 ACTCCCTTCGTCCGAAAATAC 57.757 47.619 3.52 0.00 33.34 1.89
4927 12158 3.260128 ACTCCCTTCGTCCGAAAATACTT 59.740 43.478 3.52 0.00 33.34 2.24
4928 12159 3.592059 TCCCTTCGTCCGAAAATACTTG 58.408 45.455 3.52 0.00 33.34 3.16
4929 12160 3.007182 TCCCTTCGTCCGAAAATACTTGT 59.993 43.478 3.52 0.00 33.34 3.16
4931 12162 3.991773 CCTTCGTCCGAAAATACTTGTCA 59.008 43.478 3.52 0.00 33.34 3.58
4933 12164 5.220416 CCTTCGTCCGAAAATACTTGTCATC 60.220 44.000 3.52 0.00 33.34 2.92
4934 12165 4.811908 TCGTCCGAAAATACTTGTCATCA 58.188 39.130 0.00 0.00 0.00 3.07
4935 12166 5.231702 TCGTCCGAAAATACTTGTCATCAA 58.768 37.500 0.00 0.00 0.00 2.57
4938 12169 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4939 12170 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4941 12172 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4988 12219 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
4996 12227 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
4997 12228 9.664332 CATCTAGATACATCCCCTTTTATTCAG 57.336 37.037 4.54 0.00 0.00 3.02
4998 12229 8.798975 TCTAGATACATCCCCTTTTATTCAGT 57.201 34.615 0.00 0.00 0.00 3.41
4999 12230 9.225682 TCTAGATACATCCCCTTTTATTCAGTT 57.774 33.333 0.00 0.00 0.00 3.16
5000 12231 9.853177 CTAGATACATCCCCTTTTATTCAGTTT 57.147 33.333 0.00 0.00 0.00 2.66
5001 12232 8.525290 AGATACATCCCCTTTTATTCAGTTTG 57.475 34.615 0.00 0.00 0.00 2.93
5002 12233 8.336235 AGATACATCCCCTTTTATTCAGTTTGA 58.664 33.333 0.00 0.00 0.00 2.69
5003 12234 9.136323 GATACATCCCCTTTTATTCAGTTTGAT 57.864 33.333 0.00 0.00 0.00 2.57
5004 12235 7.174107 ACATCCCCTTTTATTCAGTTTGATG 57.826 36.000 0.00 0.00 33.80 3.07
5005 12236 6.953520 ACATCCCCTTTTATTCAGTTTGATGA 59.046 34.615 0.00 0.00 32.39 2.92
5006 12237 6.834168 TCCCCTTTTATTCAGTTTGATGAC 57.166 37.500 0.00 0.00 0.00 3.06
5007 12238 6.310941 TCCCCTTTTATTCAGTTTGATGACA 58.689 36.000 0.00 0.00 0.00 3.58
5008 12239 6.780031 TCCCCTTTTATTCAGTTTGATGACAA 59.220 34.615 0.00 0.00 0.00 3.18
5009 12240 7.039784 TCCCCTTTTATTCAGTTTGATGACAAG 60.040 37.037 0.00 0.00 37.32 3.16
5010 12241 7.255942 CCCCTTTTATTCAGTTTGATGACAAGT 60.256 37.037 0.00 0.00 37.32 3.16
5011 12242 8.792633 CCCTTTTATTCAGTTTGATGACAAGTA 58.207 33.333 0.00 0.00 37.32 2.24
5017 12248 6.480524 TCAGTTTGATGACAAGTATTTCCG 57.519 37.500 0.00 0.00 37.32 4.30
5018 12249 5.411361 TCAGTTTGATGACAAGTATTTCCGG 59.589 40.000 0.00 0.00 37.32 5.14
5019 12250 5.411361 CAGTTTGATGACAAGTATTTCCGGA 59.589 40.000 0.00 0.00 37.32 5.14
5020 12251 5.411669 AGTTTGATGACAAGTATTTCCGGAC 59.588 40.000 1.83 0.00 37.32 4.79
5021 12252 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
5022 12253 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
5023 12254 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
5024 12255 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
5025 12256 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5026 12257 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5027 12258 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
5028 12259 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5029 12260 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
5030 12261 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
5031 12262 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
5032 12263 2.044650 CCGGACGGAGGGAGTACA 60.045 66.667 4.40 0.00 37.50 2.90
5033 12264 1.679977 CCGGACGGAGGGAGTACAA 60.680 63.158 4.40 0.00 37.50 2.41
5034 12265 1.252904 CCGGACGGAGGGAGTACAAA 61.253 60.000 4.40 0.00 37.50 2.83
5035 12266 0.172803 CGGACGGAGGGAGTACAAAG 59.827 60.000 0.00 0.00 0.00 2.77
5036 12267 1.264295 GGACGGAGGGAGTACAAAGT 58.736 55.000 0.00 0.00 0.00 2.66
5037 12268 2.450476 GGACGGAGGGAGTACAAAGTA 58.550 52.381 0.00 0.00 0.00 2.24
5038 12269 3.029570 GGACGGAGGGAGTACAAAGTAT 58.970 50.000 0.00 0.00 0.00 2.12
5039 12270 3.450096 GGACGGAGGGAGTACAAAGTATT 59.550 47.826 0.00 0.00 0.00 1.89
5040 12271 4.430908 GACGGAGGGAGTACAAAGTATTG 58.569 47.826 0.00 0.00 42.46 1.90
5057 12288 1.971481 TTGTCTGCATGTGTCTGCTT 58.029 45.000 0.00 0.00 42.75 3.91
5059 12290 1.605232 TGTCTGCATGTGTCTGCTTTG 59.395 47.619 0.00 0.00 42.75 2.77
5060 12291 1.605710 GTCTGCATGTGTCTGCTTTGT 59.394 47.619 0.00 0.00 42.75 2.83
5061 12292 2.807967 GTCTGCATGTGTCTGCTTTGTA 59.192 45.455 0.00 0.00 42.75 2.41
5062 12293 3.250762 GTCTGCATGTGTCTGCTTTGTAA 59.749 43.478 0.00 0.00 42.75 2.41
5063 12294 3.250762 TCTGCATGTGTCTGCTTTGTAAC 59.749 43.478 0.00 0.00 42.75 2.50
5064 12295 2.293122 TGCATGTGTCTGCTTTGTAACC 59.707 45.455 0.00 0.00 42.75 2.85
5065 12296 2.293122 GCATGTGTCTGCTTTGTAACCA 59.707 45.455 0.00 0.00 39.12 3.67
5066 12297 3.610114 GCATGTGTCTGCTTTGTAACCAG 60.610 47.826 0.00 0.00 39.12 4.00
5067 12298 3.275617 TGTGTCTGCTTTGTAACCAGT 57.724 42.857 0.00 0.00 0.00 4.00
5072 12303 6.816640 TGTGTCTGCTTTGTAACCAGTATATC 59.183 38.462 0.00 0.00 0.00 1.63
5073 12304 6.258068 GTGTCTGCTTTGTAACCAGTATATCC 59.742 42.308 0.00 0.00 0.00 2.59
5074 12305 6.156256 TGTCTGCTTTGTAACCAGTATATCCT 59.844 38.462 0.00 0.00 0.00 3.24
5075 12306 6.480320 GTCTGCTTTGTAACCAGTATATCCTG 59.520 42.308 0.00 0.00 0.00 3.86
5076 12307 5.123227 TGCTTTGTAACCAGTATATCCTGC 58.877 41.667 0.00 0.00 0.00 4.85
5077 12308 5.123227 GCTTTGTAACCAGTATATCCTGCA 58.877 41.667 0.00 0.00 0.00 4.41
5078 12309 5.765182 GCTTTGTAACCAGTATATCCTGCAT 59.235 40.000 0.00 0.00 0.00 3.96
5079 12310 6.073003 GCTTTGTAACCAGTATATCCTGCATC 60.073 42.308 0.00 0.00 0.00 3.91
5080 12311 6.493189 TTGTAACCAGTATATCCTGCATCA 57.507 37.500 0.00 0.00 0.00 3.07
5081 12312 6.101650 TGTAACCAGTATATCCTGCATCAG 57.898 41.667 0.00 0.00 0.00 2.90
5082 12313 3.692257 ACCAGTATATCCTGCATCAGC 57.308 47.619 0.00 0.00 42.57 4.26
5120 12355 9.834628 GTTTCCATATTGATAAAACGAACTTCA 57.165 29.630 0.00 0.00 0.00 3.02
5431 12667 7.239763 TGTTCTGGTTGAGTGATGAATAGTA 57.760 36.000 0.00 0.00 0.00 1.82
5527 12801 3.496130 GTCAGCGATGAATAAGTGATGGG 59.504 47.826 4.22 0.00 0.00 4.00
5540 12818 3.886123 AGTGATGGGTGTGTAAATAGGC 58.114 45.455 0.00 0.00 0.00 3.93
5675 14395 4.650972 TGGTAAATAGGCTTGGTGAACT 57.349 40.909 0.00 0.00 0.00 3.01
5830 14654 3.886505 TGTACCTGAATTTTCCGCAAACT 59.113 39.130 0.00 0.00 0.00 2.66
5855 14680 7.816640 TGCTAAAAAGACTAGCAAAATACCAG 58.183 34.615 2.15 0.00 46.69 4.00
5857 14682 8.178313 GCTAAAAAGACTAGCAAAATACCAGAG 58.822 37.037 0.00 0.00 41.25 3.35
5874 14699 1.065126 AGAGTGTAGCAGCCCATTTCC 60.065 52.381 0.00 0.00 0.00 3.13
5922 14747 3.441572 AGCGAATCAAGCAAGCTAAATGT 59.558 39.130 0.00 0.00 36.28 2.71
5925 14750 3.515330 ATCAAGCAAGCTAAATGTGCC 57.485 42.857 3.72 0.00 39.13 5.01
5956 14781 2.796483 TGCAAGCCGAATGCGTAGGT 62.796 55.000 0.00 0.00 46.76 3.08
6021 14847 5.333566 TGGGAAGAAATTCCTACTGGTTT 57.666 39.130 6.95 0.00 40.90 3.27
6030 14856 3.806949 TCCTACTGGTTTGGCTCAAAT 57.193 42.857 4.07 0.00 35.74 2.32
6330 15156 6.128138 AGCTTCCCCACCTGAATATATTAC 57.872 41.667 0.00 0.00 0.00 1.89
6331 15157 5.014228 AGCTTCCCCACCTGAATATATTACC 59.986 44.000 0.00 0.00 0.00 2.85
6332 15158 5.222048 GCTTCCCCACCTGAATATATTACCA 60.222 44.000 0.00 0.00 0.00 3.25
6333 15159 5.836024 TCCCCACCTGAATATATTACCAC 57.164 43.478 0.00 0.00 0.00 4.16
6334 15160 5.482580 TCCCCACCTGAATATATTACCACT 58.517 41.667 0.00 0.00 0.00 4.00
6335 15161 5.546499 TCCCCACCTGAATATATTACCACTC 59.454 44.000 0.00 0.00 0.00 3.51
6336 15162 5.309543 CCCCACCTGAATATATTACCACTCA 59.690 44.000 0.00 0.00 0.00 3.41
6337 15163 6.183361 CCCCACCTGAATATATTACCACTCAA 60.183 42.308 0.00 0.00 0.00 3.02
6338 15164 7.287061 CCCACCTGAATATATTACCACTCAAA 58.713 38.462 0.00 0.00 0.00 2.69
6339 15165 7.777910 CCCACCTGAATATATTACCACTCAAAA 59.222 37.037 0.00 0.00 0.00 2.44
6340 15166 8.840321 CCACCTGAATATATTACCACTCAAAAG 58.160 37.037 0.00 0.00 0.00 2.27
6341 15167 9.613428 CACCTGAATATATTACCACTCAAAAGA 57.387 33.333 0.00 0.00 0.00 2.52
6342 15168 9.838339 ACCTGAATATATTACCACTCAAAAGAG 57.162 33.333 0.00 0.00 0.00 2.85
6350 15176 6.479972 TTACCACTCAAAAGAGAGAAGTGA 57.520 37.500 2.54 0.00 38.98 3.41
6351 15177 5.359194 ACCACTCAAAAGAGAGAAGTGAA 57.641 39.130 2.54 0.00 38.98 3.18
6352 15178 5.363939 ACCACTCAAAAGAGAGAAGTGAAG 58.636 41.667 2.54 0.00 38.98 3.02
6353 15179 5.129485 ACCACTCAAAAGAGAGAAGTGAAGA 59.871 40.000 2.54 0.00 38.98 2.87
6354 15180 6.051717 CCACTCAAAAGAGAGAAGTGAAGAA 58.948 40.000 2.54 0.00 38.98 2.52
6355 15181 6.709846 CCACTCAAAAGAGAGAAGTGAAGAAT 59.290 38.462 2.54 0.00 38.98 2.40
6356 15182 7.228308 CCACTCAAAAGAGAGAAGTGAAGAATT 59.772 37.037 2.54 0.00 38.98 2.17
6357 15183 9.265901 CACTCAAAAGAGAGAAGTGAAGAATTA 57.734 33.333 0.00 0.00 38.98 1.40
6358 15184 9.267084 ACTCAAAAGAGAGAAGTGAAGAATTAC 57.733 33.333 0.00 0.00 38.98 1.89
6359 15185 9.265901 CTCAAAAGAGAGAAGTGAAGAATTACA 57.734 33.333 0.00 0.00 37.87 2.41
6360 15186 9.613428 TCAAAAGAGAGAAGTGAAGAATTACAA 57.387 29.630 0.00 0.00 0.00 2.41
6361 15187 9.657121 CAAAAGAGAGAAGTGAAGAATTACAAC 57.343 33.333 0.00 0.00 0.00 3.32
6362 15188 8.964476 AAAGAGAGAAGTGAAGAATTACAACA 57.036 30.769 0.00 0.00 0.00 3.33
6363 15189 8.600449 AAGAGAGAAGTGAAGAATTACAACAG 57.400 34.615 0.00 0.00 0.00 3.16
6364 15190 7.731054 AGAGAGAAGTGAAGAATTACAACAGT 58.269 34.615 0.00 0.00 0.00 3.55
6365 15191 8.861086 AGAGAGAAGTGAAGAATTACAACAGTA 58.139 33.333 0.00 0.00 0.00 2.74
6366 15192 9.134734 GAGAGAAGTGAAGAATTACAACAGTAG 57.865 37.037 0.00 0.00 0.00 2.57
6367 15193 8.643324 AGAGAAGTGAAGAATTACAACAGTAGT 58.357 33.333 0.00 0.00 0.00 2.73
6368 15194 9.262358 GAGAAGTGAAGAATTACAACAGTAGTT 57.738 33.333 0.00 0.00 38.88 2.24
6369 15195 9.262358 AGAAGTGAAGAATTACAACAGTAGTTC 57.738 33.333 0.00 0.00 35.28 3.01
6370 15196 8.958119 AAGTGAAGAATTACAACAGTAGTTCA 57.042 30.769 11.65 0.00 37.10 3.18
6371 15197 8.594881 AGTGAAGAATTACAACAGTAGTTCAG 57.405 34.615 11.65 0.00 37.10 3.02
6372 15198 8.204836 AGTGAAGAATTACAACAGTAGTTCAGT 58.795 33.333 11.65 0.00 37.10 3.41
6373 15199 8.827677 GTGAAGAATTACAACAGTAGTTCAGTT 58.172 33.333 11.65 1.34 37.10 3.16
6376 15202 9.826574 AAGAATTACAACAGTAGTTCAGTTACA 57.173 29.630 11.65 0.00 37.10 2.41
6377 15203 9.826574 AGAATTACAACAGTAGTTCAGTTACAA 57.173 29.630 11.65 0.00 37.10 2.41
6378 15204 9.859692 GAATTACAACAGTAGTTCAGTTACAAC 57.140 33.333 6.16 0.00 35.64 3.32
6379 15205 8.951787 ATTACAACAGTAGTTCAGTTACAACA 57.048 30.769 0.00 0.00 35.28 3.33
6380 15206 6.903883 ACAACAGTAGTTCAGTTACAACAG 57.096 37.500 0.00 0.00 35.28 3.16
6381 15207 5.293569 ACAACAGTAGTTCAGTTACAACAGC 59.706 40.000 0.00 0.00 35.28 4.40
6382 15208 4.377897 ACAGTAGTTCAGTTACAACAGCC 58.622 43.478 0.00 0.00 0.00 4.85
6383 15209 3.428870 CAGTAGTTCAGTTACAACAGCCG 59.571 47.826 0.00 0.00 0.00 5.52
6384 15210 1.226746 AGTTCAGTTACAACAGCCGC 58.773 50.000 0.00 0.00 0.00 6.53
6385 15211 1.202651 AGTTCAGTTACAACAGCCGCT 60.203 47.619 0.00 0.00 0.00 5.52
6386 15212 1.602377 GTTCAGTTACAACAGCCGCTT 59.398 47.619 0.00 0.00 0.00 4.68
6387 15213 1.961793 TCAGTTACAACAGCCGCTTT 58.038 45.000 0.00 0.00 0.00 3.51
6388 15214 2.294074 TCAGTTACAACAGCCGCTTTT 58.706 42.857 0.00 0.00 0.00 2.27
6389 15215 3.468770 TCAGTTACAACAGCCGCTTTTA 58.531 40.909 0.00 0.00 0.00 1.52
6390 15216 3.496884 TCAGTTACAACAGCCGCTTTTAG 59.503 43.478 0.00 0.00 0.00 1.85
6391 15217 3.250040 CAGTTACAACAGCCGCTTTTAGT 59.750 43.478 0.00 0.00 0.00 2.24
6392 15218 3.250040 AGTTACAACAGCCGCTTTTAGTG 59.750 43.478 0.00 0.00 0.00 2.74
6393 15219 1.961793 ACAACAGCCGCTTTTAGTGA 58.038 45.000 0.00 0.00 0.00 3.41
6394 15220 2.504367 ACAACAGCCGCTTTTAGTGAT 58.496 42.857 0.00 0.00 0.00 3.06
6395 15221 2.884639 ACAACAGCCGCTTTTAGTGATT 59.115 40.909 0.00 0.00 0.00 2.57
6396 15222 4.069304 ACAACAGCCGCTTTTAGTGATTA 58.931 39.130 0.00 0.00 0.00 1.75
6397 15223 4.154195 ACAACAGCCGCTTTTAGTGATTAG 59.846 41.667 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.378742 ACTGCGAGAGACATACTACAAGG 59.621 47.826 0.00 0.00 0.00 3.61
4 5 3.109619 GCAACTGCGAGAGACATACTAC 58.890 50.000 0.00 0.00 0.00 2.73
6 7 1.546029 TGCAACTGCGAGAGACATACT 59.454 47.619 0.00 0.00 45.83 2.12
7 8 1.996292 TGCAACTGCGAGAGACATAC 58.004 50.000 0.00 0.00 45.83 2.39
8 9 2.094026 ACATGCAACTGCGAGAGACATA 60.094 45.455 0.00 0.00 45.83 2.29
9 10 1.338484 ACATGCAACTGCGAGAGACAT 60.338 47.619 0.00 0.00 45.83 3.06
10 11 0.033920 ACATGCAACTGCGAGAGACA 59.966 50.000 0.00 0.00 45.83 3.41
11 12 1.127582 GAACATGCAACTGCGAGAGAC 59.872 52.381 0.00 0.00 45.83 3.36
12 13 1.270252 TGAACATGCAACTGCGAGAGA 60.270 47.619 0.00 0.00 45.83 3.10
13 14 1.136141 GTGAACATGCAACTGCGAGAG 60.136 52.381 0.00 0.00 45.83 3.20
14 15 0.867746 GTGAACATGCAACTGCGAGA 59.132 50.000 0.00 0.00 45.83 4.04
15 16 0.110056 GGTGAACATGCAACTGCGAG 60.110 55.000 0.00 0.00 45.83 5.03
16 17 1.514678 GGGTGAACATGCAACTGCGA 61.515 55.000 0.00 0.00 45.83 5.10
17 18 1.081242 GGGTGAACATGCAACTGCG 60.081 57.895 0.00 0.00 45.83 5.18
18 19 0.388659 TTGGGTGAACATGCAACTGC 59.611 50.000 0.00 0.00 42.50 4.40
19 20 1.408340 TGTTGGGTGAACATGCAACTG 59.592 47.619 11.31 0.00 39.78 3.16
20 21 1.774110 TGTTGGGTGAACATGCAACT 58.226 45.000 11.31 0.00 39.78 3.16
28 29 9.403583 TCTTAAAATAGGATATGTTGGGTGAAC 57.596 33.333 0.00 0.00 34.84 3.18
29 30 9.983024 TTCTTAAAATAGGATATGTTGGGTGAA 57.017 29.630 0.00 0.00 0.00 3.18
30 31 9.983024 TTTCTTAAAATAGGATATGTTGGGTGA 57.017 29.630 0.00 0.00 0.00 4.02
47 48 8.884726 GGGTTAACATGCAAAGTTTTCTTAAAA 58.115 29.630 12.35 0.00 39.48 1.52
48 49 8.041323 TGGGTTAACATGCAAAGTTTTCTTAAA 58.959 29.630 12.35 0.00 39.48 1.52
143 192 2.855209 ATGCATCAGGTCTGGATAGC 57.145 50.000 0.00 0.00 0.00 2.97
144 193 5.672421 TGATATGCATCAGGTCTGGATAG 57.328 43.478 0.19 0.00 36.22 2.08
259 325 4.367023 CCGGTTCGCTTCCGTCCA 62.367 66.667 0.00 0.00 45.63 4.02
319 385 2.094906 GGGCTTGTTTGGATTACCGTTC 60.095 50.000 0.00 0.00 39.42 3.95
385 451 4.526970 CCCGGCCTCTGCATAATATATTT 58.473 43.478 2.68 0.00 40.13 1.40
397 463 2.271173 GGTTTACCCCGGCCTCTG 59.729 66.667 0.00 0.00 0.00 3.35
407 473 4.669206 TTTTTCGAAAAGGGGGTTTACC 57.331 40.909 21.53 0.00 39.11 2.85
430 496 9.645059 CCTACTTATGACATGACATATCGATTT 57.355 33.333 16.73 0.00 33.60 2.17
431 497 9.025041 TCCTACTTATGACATGACATATCGATT 57.975 33.333 16.73 2.25 33.60 3.34
439 505 7.436933 GTGATCATCCTACTTATGACATGACA 58.563 38.462 0.00 0.00 36.24 3.58
527 593 3.923273 AGGGGTCCAAATCTCCTTTTT 57.077 42.857 0.00 0.00 0.00 1.94
528 594 3.402708 AGAAGGGGTCCAAATCTCCTTTT 59.597 43.478 0.00 0.00 37.88 2.27
529 595 2.996742 AGAAGGGGTCCAAATCTCCTTT 59.003 45.455 0.00 0.00 37.88 3.11
530 596 2.648838 AGAAGGGGTCCAAATCTCCTT 58.351 47.619 0.00 0.00 40.18 3.36
531 597 2.367947 AGAAGGGGTCCAAATCTCCT 57.632 50.000 0.00 0.00 0.00 3.69
532 598 3.092301 CAAAGAAGGGGTCCAAATCTCC 58.908 50.000 0.00 0.00 0.00 3.71
533 599 3.092301 CCAAAGAAGGGGTCCAAATCTC 58.908 50.000 0.00 0.00 0.00 2.75
534 600 2.225369 CCCAAAGAAGGGGTCCAAATCT 60.225 50.000 0.00 0.00 45.60 2.40
535 601 2.179427 CCCAAAGAAGGGGTCCAAATC 58.821 52.381 0.00 0.00 45.60 2.17
536 602 2.325661 CCCAAAGAAGGGGTCCAAAT 57.674 50.000 0.00 0.00 45.60 2.32
537 603 3.861002 CCCAAAGAAGGGGTCCAAA 57.139 52.632 0.00 0.00 45.60 3.28
558 624 1.352352 CTCTGGACCCACCTTGTCAAT 59.648 52.381 0.00 0.00 39.86 2.57
718 792 5.541845 TGAAGTGTGGTTCAGTAAGATGAG 58.458 41.667 0.00 0.00 32.54 2.90
1470 3167 8.181904 ACCTCAATATCTTGATCTCTCTCTTC 57.818 38.462 0.00 0.00 40.52 2.87
1656 3364 3.346426 GCCAAGAGCAGAAAAGGGA 57.654 52.632 0.00 0.00 42.97 4.20
1931 4332 8.056571 GTGATACTAAAACAATAGACGCATCAC 58.943 37.037 0.00 0.00 32.07 3.06
2691 5358 9.151471 TGCTAAAGTTCAACTAATCTACATGAC 57.849 33.333 0.00 0.00 0.00 3.06
2742 5438 1.002274 AACACCAAACAAGGGGGCA 59.998 52.632 0.00 0.00 35.95 5.36
3359 6381 2.044555 CCCGTGAGCTCGTCCACTA 61.045 63.158 9.64 0.00 0.00 2.74
3459 6482 3.023832 AGGGTGTCAAGGTTGTTTCTTG 58.976 45.455 0.00 0.00 41.99 3.02
3701 6724 5.735922 GCTGCTGGATAGTTTTGTTGTTTGA 60.736 40.000 0.00 0.00 0.00 2.69
4409 11589 1.616374 GCCCATTTTCTTTCAACGGGA 59.384 47.619 0.00 0.00 33.83 5.14
4494 11674 4.823989 GGTGGATAAGTGATGCATTAGCTT 59.176 41.667 0.00 8.45 38.28 3.74
4636 11819 4.895889 TCTAACATATCACTGACCTGAGGG 59.104 45.833 2.38 0.00 38.88 4.30
4907 12138 3.007182 ACAAGTATTTTCGGACGAAGGGA 59.993 43.478 7.25 0.00 35.38 4.20
4908 12139 3.332034 ACAAGTATTTTCGGACGAAGGG 58.668 45.455 7.25 0.00 35.38 3.95
4909 12140 3.991773 TGACAAGTATTTTCGGACGAAGG 59.008 43.478 7.25 0.00 35.38 3.46
4910 12141 5.347635 TGATGACAAGTATTTTCGGACGAAG 59.652 40.000 7.25 0.00 35.38 3.79
4912 12143 4.811908 TGATGACAAGTATTTTCGGACGA 58.188 39.130 0.00 0.00 0.00 4.20
4913 12144 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4914 12145 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4915 12146 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4916 12147 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4924 12155 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
4962 12193 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
4970 12201 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
4971 12202 9.664332 CTGAATAAAAGGGGATGTATCTAGATG 57.336 37.037 15.79 0.00 0.00 2.90
4972 12203 9.398921 ACTGAATAAAAGGGGATGTATCTAGAT 57.601 33.333 10.73 10.73 0.00 1.98
4973 12204 8.798975 ACTGAATAAAAGGGGATGTATCTAGA 57.201 34.615 0.00 0.00 0.00 2.43
4974 12205 9.853177 AAACTGAATAAAAGGGGATGTATCTAG 57.147 33.333 0.00 0.00 0.00 2.43
4975 12206 9.627123 CAAACTGAATAAAAGGGGATGTATCTA 57.373 33.333 0.00 0.00 0.00 1.98
4976 12207 8.336235 TCAAACTGAATAAAAGGGGATGTATCT 58.664 33.333 0.00 0.00 0.00 1.98
4977 12208 8.519799 TCAAACTGAATAAAAGGGGATGTATC 57.480 34.615 0.00 0.00 0.00 2.24
4978 12209 8.917088 CATCAAACTGAATAAAAGGGGATGTAT 58.083 33.333 0.00 0.00 0.00 2.29
4979 12210 8.112822 TCATCAAACTGAATAAAAGGGGATGTA 58.887 33.333 0.00 0.00 32.47 2.29
4980 12211 6.953520 TCATCAAACTGAATAAAAGGGGATGT 59.046 34.615 0.00 0.00 32.47 3.06
4981 12212 7.093814 TGTCATCAAACTGAATAAAAGGGGATG 60.094 37.037 0.00 0.00 0.00 3.51
4982 12213 6.953520 TGTCATCAAACTGAATAAAAGGGGAT 59.046 34.615 0.00 0.00 0.00 3.85
4983 12214 6.310941 TGTCATCAAACTGAATAAAAGGGGA 58.689 36.000 0.00 0.00 0.00 4.81
4984 12215 6.588719 TGTCATCAAACTGAATAAAAGGGG 57.411 37.500 0.00 0.00 0.00 4.79
4985 12216 7.661040 ACTTGTCATCAAACTGAATAAAAGGG 58.339 34.615 0.00 0.00 32.87 3.95
4991 12222 8.664798 CGGAAATACTTGTCATCAAACTGAATA 58.335 33.333 0.00 0.00 32.87 1.75
4992 12223 7.362056 CCGGAAATACTTGTCATCAAACTGAAT 60.362 37.037 0.00 0.00 32.87 2.57
4993 12224 6.072728 CCGGAAATACTTGTCATCAAACTGAA 60.073 38.462 0.00 0.00 32.87 3.02
4994 12225 5.411361 CCGGAAATACTTGTCATCAAACTGA 59.589 40.000 0.00 0.00 32.87 3.41
4995 12226 5.411361 TCCGGAAATACTTGTCATCAAACTG 59.589 40.000 0.00 0.00 32.87 3.16
4996 12227 5.411669 GTCCGGAAATACTTGTCATCAAACT 59.588 40.000 5.23 0.00 32.87 2.66
4997 12228 5.628134 GTCCGGAAATACTTGTCATCAAAC 58.372 41.667 5.23 0.00 32.87 2.93
4998 12229 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4999 12230 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
5000 12231 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
5001 12232 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
5002 12233 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
5003 12234 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
5004 12235 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5005 12236 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5006 12237 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5007 12238 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5008 12239 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5009 12240 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5010 12241 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5011 12242 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5012 12243 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
5013 12244 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
5014 12245 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
5015 12246 1.252904 TTTGTACTCCCTCCGTCCGG 61.253 60.000 0.00 0.00 0.00 5.14
5016 12247 0.172803 CTTTGTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
5017 12248 1.264295 ACTTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
5018 12249 4.081807 ACAATACTTTGTACTCCCTCCGTC 60.082 45.833 0.00 0.00 44.22 4.79
5019 12250 3.836562 ACAATACTTTGTACTCCCTCCGT 59.163 43.478 0.00 0.00 44.22 4.69
5020 12251 4.159879 AGACAATACTTTGTACTCCCTCCG 59.840 45.833 0.00 0.00 46.01 4.63
5021 12252 5.420409 CAGACAATACTTTGTACTCCCTCC 58.580 45.833 0.00 0.00 46.01 4.30
5022 12253 4.870991 GCAGACAATACTTTGTACTCCCTC 59.129 45.833 0.00 0.00 46.01 4.30
5023 12254 4.286032 TGCAGACAATACTTTGTACTCCCT 59.714 41.667 0.00 0.00 46.01 4.20
5024 12255 4.575885 TGCAGACAATACTTTGTACTCCC 58.424 43.478 0.00 0.00 46.01 4.30
5025 12256 5.643777 ACATGCAGACAATACTTTGTACTCC 59.356 40.000 0.00 0.00 46.01 3.85
5026 12257 6.147821 ACACATGCAGACAATACTTTGTACTC 59.852 38.462 0.00 0.00 46.01 2.59
5027 12258 5.997746 ACACATGCAGACAATACTTTGTACT 59.002 36.000 0.00 0.00 46.01 2.73
5028 12259 6.147821 AGACACATGCAGACAATACTTTGTAC 59.852 38.462 0.00 0.00 46.01 2.90
5029 12260 6.147656 CAGACACATGCAGACAATACTTTGTA 59.852 38.462 0.00 0.00 46.01 2.41
5030 12261 8.433758 GCAGACACATGCAGACAATACTTTGT 62.434 42.308 0.00 0.00 45.89 2.83
5031 12262 5.388111 CAGACACATGCAGACAATACTTTG 58.612 41.667 0.00 0.00 38.86 2.77
5032 12263 4.083110 GCAGACACATGCAGACAATACTTT 60.083 41.667 0.00 0.00 45.77 2.66
5033 12264 3.438087 GCAGACACATGCAGACAATACTT 59.562 43.478 0.00 0.00 45.77 2.24
5034 12265 3.005554 GCAGACACATGCAGACAATACT 58.994 45.455 0.00 0.00 45.77 2.12
5035 12266 3.395858 GCAGACACATGCAGACAATAC 57.604 47.619 0.00 0.00 45.77 1.89
5057 12288 6.493189 TGATGCAGGATATACTGGTTACAA 57.507 37.500 16.91 0.00 38.90 2.41
5059 12290 4.932200 GCTGATGCAGGATATACTGGTTAC 59.068 45.833 16.91 0.30 38.90 2.50
5060 12291 4.592778 TGCTGATGCAGGATATACTGGTTA 59.407 41.667 16.91 0.00 45.31 2.85
5061 12292 3.392285 TGCTGATGCAGGATATACTGGTT 59.608 43.478 16.91 0.00 45.31 3.67
5062 12293 2.974794 TGCTGATGCAGGATATACTGGT 59.025 45.455 16.91 0.00 45.31 4.00
5063 12294 3.690475 TGCTGATGCAGGATATACTGG 57.310 47.619 16.91 0.53 45.31 4.00
5120 12355 3.016736 ACTGTGCAGCACTAAAACTTGT 58.983 40.909 25.83 9.03 35.11 3.16
5191 12426 6.573434 TGTAACATCTGAAGTATACAGGCAG 58.427 40.000 5.50 9.10 36.22 4.85
5527 12801 2.419667 ACACACCGCCTATTTACACAC 58.580 47.619 0.00 0.00 0.00 3.82
5540 12818 3.602390 AAACGAAGATGAAACACACCG 57.398 42.857 0.00 0.00 0.00 4.94
5855 14680 1.383523 GGAAATGGGCTGCTACACTC 58.616 55.000 0.00 0.75 0.00 3.51
5857 14682 1.376609 CCGGAAATGGGCTGCTACAC 61.377 60.000 0.00 0.00 0.00 2.90
5874 14699 3.884169 TCAAAAAGCAAACGATTCTCCG 58.116 40.909 0.00 0.00 0.00 4.63
5922 14747 2.878580 CTTGCATAAAATTGCTCGGCA 58.121 42.857 0.00 0.00 43.18 5.69
5925 14750 1.847999 CGGCTTGCATAAAATTGCTCG 59.152 47.619 0.00 0.00 43.18 5.03
5945 14770 7.748847 TCAAAGAGAATTAAACCTACGCATTC 58.251 34.615 0.00 0.00 0.00 2.67
6307 15133 5.014228 GGTAATATATTCAGGTGGGGAAGCT 59.986 44.000 0.00 0.00 36.97 3.74
6308 15134 5.222048 TGGTAATATATTCAGGTGGGGAAGC 60.222 44.000 0.00 0.00 0.00 3.86
6309 15135 6.044404 AGTGGTAATATATTCAGGTGGGGAAG 59.956 42.308 0.00 0.00 0.00 3.46
6310 15136 5.914716 AGTGGTAATATATTCAGGTGGGGAA 59.085 40.000 0.00 0.00 0.00 3.97
6311 15137 5.482580 AGTGGTAATATATTCAGGTGGGGA 58.517 41.667 0.00 0.00 0.00 4.81
6312 15138 5.309543 TGAGTGGTAATATATTCAGGTGGGG 59.690 44.000 0.00 0.00 0.00 4.96
6313 15139 6.433847 TGAGTGGTAATATATTCAGGTGGG 57.566 41.667 0.00 0.00 0.00 4.61
6314 15140 8.746052 TTTTGAGTGGTAATATATTCAGGTGG 57.254 34.615 0.00 0.00 0.00 4.61
6315 15141 9.613428 TCTTTTGAGTGGTAATATATTCAGGTG 57.387 33.333 0.00 0.00 0.00 4.00
6316 15142 9.838339 CTCTTTTGAGTGGTAATATATTCAGGT 57.162 33.333 0.00 0.00 41.49 4.00
6324 15150 8.816894 TCACTTCTCTCTTTTGAGTGGTAATAT 58.183 33.333 0.00 0.00 46.30 1.28
6325 15151 8.190326 TCACTTCTCTCTTTTGAGTGGTAATA 57.810 34.615 0.00 0.00 46.30 0.98
6326 15152 7.067496 TCACTTCTCTCTTTTGAGTGGTAAT 57.933 36.000 0.00 0.00 46.30 1.89
6327 15153 6.479972 TCACTTCTCTCTTTTGAGTGGTAA 57.520 37.500 0.00 0.00 46.30 2.85
6328 15154 6.323996 TCTTCACTTCTCTCTTTTGAGTGGTA 59.676 38.462 0.00 0.00 46.30 3.25
6329 15155 5.129485 TCTTCACTTCTCTCTTTTGAGTGGT 59.871 40.000 0.00 0.00 46.30 4.16
6330 15156 5.605534 TCTTCACTTCTCTCTTTTGAGTGG 58.394 41.667 0.00 0.00 46.30 4.00
6331 15157 7.727331 ATTCTTCACTTCTCTCTTTTGAGTG 57.273 36.000 0.00 0.00 46.30 3.51
6332 15158 9.267084 GTAATTCTTCACTTCTCTCTTTTGAGT 57.733 33.333 0.00 0.00 46.30 3.41
6334 15160 9.613428 TTGTAATTCTTCACTTCTCTCTTTTGA 57.387 29.630 0.00 0.00 0.00 2.69
6335 15161 9.657121 GTTGTAATTCTTCACTTCTCTCTTTTG 57.343 33.333 0.00 0.00 0.00 2.44
6336 15162 9.396022 TGTTGTAATTCTTCACTTCTCTCTTTT 57.604 29.630 0.00 0.00 0.00 2.27
6337 15163 8.964476 TGTTGTAATTCTTCACTTCTCTCTTT 57.036 30.769 0.00 0.00 0.00 2.52
6338 15164 8.207545 ACTGTTGTAATTCTTCACTTCTCTCTT 58.792 33.333 0.00 0.00 0.00 2.85
6339 15165 7.731054 ACTGTTGTAATTCTTCACTTCTCTCT 58.269 34.615 0.00 0.00 0.00 3.10
6340 15166 7.954788 ACTGTTGTAATTCTTCACTTCTCTC 57.045 36.000 0.00 0.00 0.00 3.20
6341 15167 8.643324 ACTACTGTTGTAATTCTTCACTTCTCT 58.357 33.333 0.00 0.00 0.00 3.10
6342 15168 8.819643 ACTACTGTTGTAATTCTTCACTTCTC 57.180 34.615 0.00 0.00 0.00 2.87
6343 15169 9.262358 GAACTACTGTTGTAATTCTTCACTTCT 57.738 33.333 0.00 0.00 33.59 2.85
6344 15170 9.042008 TGAACTACTGTTGTAATTCTTCACTTC 57.958 33.333 0.00 0.00 36.29 3.01
6345 15171 8.958119 TGAACTACTGTTGTAATTCTTCACTT 57.042 30.769 0.00 0.00 36.29 3.16
6346 15172 8.204836 ACTGAACTACTGTTGTAATTCTTCACT 58.795 33.333 0.00 0.00 36.29 3.41
6347 15173 8.366671 ACTGAACTACTGTTGTAATTCTTCAC 57.633 34.615 0.00 0.00 36.29 3.18
6348 15174 8.958119 AACTGAACTACTGTTGTAATTCTTCA 57.042 30.769 0.00 0.00 36.29 3.02
6350 15176 9.826574 TGTAACTGAACTACTGTTGTAATTCTT 57.173 29.630 0.00 0.00 40.07 2.52
6351 15177 9.826574 TTGTAACTGAACTACTGTTGTAATTCT 57.173 29.630 0.00 0.00 40.07 2.40
6352 15178 9.859692 GTTGTAACTGAACTACTGTTGTAATTC 57.140 33.333 0.00 0.00 40.07 2.17
6353 15179 9.386010 TGTTGTAACTGAACTACTGTTGTAATT 57.614 29.630 0.00 0.00 40.07 1.40
6354 15180 8.951787 TGTTGTAACTGAACTACTGTTGTAAT 57.048 30.769 0.00 0.00 40.07 1.89
6355 15181 7.010738 GCTGTTGTAACTGAACTACTGTTGTAA 59.989 37.037 5.91 0.00 40.07 2.41
6356 15182 6.477688 GCTGTTGTAACTGAACTACTGTTGTA 59.522 38.462 5.91 0.00 40.07 2.41
6357 15183 5.293569 GCTGTTGTAACTGAACTACTGTTGT 59.706 40.000 5.91 0.00 40.07 3.32
6358 15184 5.277345 GGCTGTTGTAACTGAACTACTGTTG 60.277 44.000 5.91 0.00 40.07 3.33
6359 15185 4.814771 GGCTGTTGTAACTGAACTACTGTT 59.185 41.667 5.91 0.00 41.95 3.16
6360 15186 4.377897 GGCTGTTGTAACTGAACTACTGT 58.622 43.478 5.91 0.00 0.00 3.55
6361 15187 3.428870 CGGCTGTTGTAACTGAACTACTG 59.571 47.826 5.91 0.00 0.00 2.74
6362 15188 3.650139 CGGCTGTTGTAACTGAACTACT 58.350 45.455 5.91 0.00 0.00 2.57
6363 15189 2.157085 GCGGCTGTTGTAACTGAACTAC 59.843 50.000 5.91 0.00 0.00 2.73
6364 15190 2.036733 AGCGGCTGTTGTAACTGAACTA 59.963 45.455 0.00 0.00 0.00 2.24
6365 15191 1.202651 AGCGGCTGTTGTAACTGAACT 60.203 47.619 0.00 0.00 0.00 3.01
6366 15192 1.226746 AGCGGCTGTTGTAACTGAAC 58.773 50.000 0.00 0.00 0.00 3.18
6367 15193 1.961793 AAGCGGCTGTTGTAACTGAA 58.038 45.000 1.81 0.00 0.00 3.02
6368 15194 1.961793 AAAGCGGCTGTTGTAACTGA 58.038 45.000 1.81 0.00 0.00 3.41
6369 15195 2.774439 AAAAGCGGCTGTTGTAACTG 57.226 45.000 4.21 0.00 0.00 3.16
6370 15196 3.250040 CACTAAAAGCGGCTGTTGTAACT 59.750 43.478 15.64 0.00 0.00 2.24
6371 15197 3.249080 TCACTAAAAGCGGCTGTTGTAAC 59.751 43.478 15.64 0.00 0.00 2.50
6372 15198 3.468770 TCACTAAAAGCGGCTGTTGTAA 58.531 40.909 15.64 0.00 0.00 2.41
6373 15199 3.114668 TCACTAAAAGCGGCTGTTGTA 57.885 42.857 15.64 0.00 0.00 2.41
6374 15200 1.961793 TCACTAAAAGCGGCTGTTGT 58.038 45.000 15.64 8.61 0.00 3.32
6375 15201 3.559238 AATCACTAAAAGCGGCTGTTG 57.441 42.857 15.64 8.01 0.00 3.33
6376 15202 4.946784 CTAATCACTAAAAGCGGCTGTT 57.053 40.909 10.76 10.76 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.