Multiple sequence alignment - TraesCS4B01G195000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G195000 chr4B 100.000 5564 0 0 1 5564 419821854 419827417 0.000000e+00 10275.0
1 TraesCS4B01G195000 chr4B 95.652 253 8 2 180 432 21235129 21235378 2.410000e-108 403.0
2 TraesCS4B01G195000 chr4B 74.661 221 54 2 4179 4398 619222901 619222682 4.590000e-16 97.1
3 TraesCS4B01G195000 chr4B 92.453 53 4 0 420 472 363642651 363642599 5.980000e-10 76.8
4 TraesCS4B01G195000 chr4D 95.307 2472 80 13 475 2934 339538843 339541290 0.000000e+00 3890.0
5 TraesCS4B01G195000 chr4D 93.006 1444 73 16 3402 4825 339541854 339543289 0.000000e+00 2082.0
6 TraesCS4B01G195000 chr4D 84.895 715 67 22 4859 5562 339543603 339544287 0.000000e+00 684.0
7 TraesCS4B01G195000 chr4D 90.688 494 29 12 2919 3401 339541318 339541805 4.700000e-180 641.0
8 TraesCS4B01G195000 chr4D 91.608 143 9 2 2 143 339538687 339538827 1.580000e-45 195.0
9 TraesCS4B01G195000 chr4D 92.982 57 4 0 416 472 124010677 124010733 3.570000e-12 84.2
10 TraesCS4B01G195000 chr4A 96.988 1660 42 4 493 2152 130506732 130505081 0.000000e+00 2782.0
11 TraesCS4B01G195000 chr4A 92.382 932 60 8 3904 4825 130502640 130501710 0.000000e+00 1317.0
12 TraesCS4B01G195000 chr4A 93.627 408 24 2 2163 2568 130505033 130504626 4.770000e-170 608.0
13 TraesCS4B01G195000 chr4A 85.865 474 52 9 2919 3387 130504263 130503800 1.800000e-134 490.0
14 TraesCS4B01G195000 chr4A 87.332 371 30 9 3483 3851 130502984 130502629 5.190000e-110 409.0
15 TraesCS4B01G195000 chr4A 82.337 368 40 10 2589 2938 130504645 130504285 4.210000e-76 296.0
16 TraesCS4B01G195000 chr4A 88.889 171 12 4 2 170 130506918 130506753 2.630000e-48 204.0
17 TraesCS4B01G195000 chr2B 97.531 243 6 0 180 422 176251983 176251741 3.100000e-112 416.0
18 TraesCS4B01G195000 chr2B 91.228 57 5 0 416 472 710979828 710979772 1.660000e-10 78.7
19 TraesCS4B01G195000 chr2B 94.118 51 3 0 417 467 742076633 742076683 1.660000e-10 78.7
20 TraesCS4B01G195000 chrUn 97.521 242 6 0 180 421 59805325 59805084 1.120000e-111 414.0
21 TraesCS4B01G195000 chrUn 94.403 268 14 1 171 438 262809154 262808888 1.440000e-110 411.0
22 TraesCS4B01G195000 chrUn 85.938 64 9 0 416 479 83375475 83375538 1.000000e-07 69.4
23 TraesCS4B01G195000 chr7B 97.908 239 5 0 180 418 607706961 607707199 1.120000e-111 414.0
24 TraesCS4B01G195000 chr7B 97.119 243 7 0 180 422 23209008 23208766 1.440000e-110 411.0
25 TraesCS4B01G195000 chr1B 97.908 239 5 0 180 418 376372364 376372602 1.120000e-111 414.0
26 TraesCS4B01G195000 chr1B 79.370 349 57 13 1684 2023 85432670 85433012 1.210000e-56 231.0
27 TraesCS4B01G195000 chr5B 97.119 243 7 0 180 422 393769802 393770044 1.440000e-110 411.0
28 TraesCS4B01G195000 chr6B 94.922 256 11 2 180 433 143615511 143615256 3.120000e-107 399.0
29 TraesCS4B01G195000 chr6B 92.982 57 4 0 416 472 678530843 678530787 3.570000e-12 84.2
30 TraesCS4B01G195000 chr1D 79.370 349 57 12 1684 2023 53231524 53231866 1.210000e-56 231.0
31 TraesCS4B01G195000 chr1D 80.342 234 34 10 1302 1529 53231138 53231365 3.450000e-37 167.0
32 TraesCS4B01G195000 chr1D 92.982 57 4 0 416 472 295442960 295442904 3.570000e-12 84.2
33 TraesCS4B01G195000 chr1A 78.510 349 60 13 1684 2023 53023015 53023357 1.210000e-51 215.0
34 TraesCS4B01G195000 chr1A 79.060 234 37 10 1302 1529 53022633 53022860 3.470000e-32 150.0
35 TraesCS4B01G195000 chr7D 91.045 67 5 1 416 481 563665296 563665362 7.680000e-14 89.8
36 TraesCS4B01G195000 chr5D 88.889 63 7 0 416 478 284177613 284177551 1.660000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G195000 chr4B 419821854 419827417 5563 False 10275.000000 10275 100.000000 1 5564 1 chr4B.!!$F2 5563
1 TraesCS4B01G195000 chr4D 339538687 339544287 5600 False 1498.400000 3890 91.100800 2 5562 5 chr4D.!!$F2 5560
2 TraesCS4B01G195000 chr4A 130501710 130506918 5208 True 872.285714 2782 89.631429 2 4825 7 chr4A.!!$R1 4823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 418 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.0 34.45 2.73 F
417 419 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.0 34.45 1.82 F
1508 1523 0.182061 TCGACTGGGGCGACTACTAT 59.818 55.000 0.00 0.0 32.09 2.12 F
2078 2093 1.403116 CGTGTATGTGGTAGGAACGCA 60.403 52.381 0.00 0.0 0.00 5.24 F
3302 3461 1.472201 CCGCAGATGCTCACATACACT 60.472 52.381 2.95 0.0 36.35 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 2093 0.179145 GCTGTCGCCTGTACGTATGT 60.179 55.000 0.00 0.0 0.00 2.29 R
2114 2129 1.262417 TCTATCAACTCACGGGTGCA 58.738 50.000 0.00 0.0 31.53 4.57 R
2360 2412 1.297689 GACCCCCACTACCGGTTTC 59.702 63.158 15.04 0.0 0.00 2.78 R
3732 4624 0.250467 TGCCTGAGTTGAGACCTTGC 60.250 55.000 0.00 0.0 0.00 4.01 R
5125 6324 0.179158 ACCAAACAACAAACGTCGCC 60.179 50.000 0.00 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 2.576191 CCAGAAATTACTCCCAGGGACA 59.424 50.000 3.01 0.00 0.00 4.02
41 43 7.363705 CCAGGGACATCAGCTAGATAAGATTAG 60.364 44.444 0.00 0.00 34.43 1.73
42 44 7.178274 CAGGGACATCAGCTAGATAAGATTAGT 59.822 40.741 0.00 0.00 34.43 2.24
110 112 2.481276 CGAGAGGCATGTAACCAATCGA 60.481 50.000 8.19 0.00 38.79 3.59
126 128 3.951775 ATCGATTGGCTTCCTAGCTAG 57.048 47.619 14.20 14.20 46.90 3.42
132 134 1.064166 TGGCTTCCTAGCTAGTACCGT 60.064 52.381 19.31 0.00 46.90 4.83
133 135 1.608109 GGCTTCCTAGCTAGTACCGTC 59.392 57.143 19.31 3.08 46.90 4.79
134 136 2.574450 GCTTCCTAGCTAGTACCGTCT 58.426 52.381 19.31 0.00 44.27 4.18
135 137 3.495806 GGCTTCCTAGCTAGTACCGTCTA 60.496 52.174 19.31 0.00 46.90 2.59
157 159 8.448615 GTCTATATACATATATACATGCGCGGA 58.551 37.037 8.83 5.00 31.69 5.54
158 160 8.448615 TCTATATACATATATACATGCGCGGAC 58.551 37.037 8.83 0.00 31.69 4.79
161 163 4.503910 ACATATATACATGCGCGGACAAT 58.496 39.130 8.83 2.00 0.00 2.71
162 164 4.935205 ACATATATACATGCGCGGACAATT 59.065 37.500 8.83 0.00 0.00 2.32
163 165 3.811722 ATATACATGCGCGGACAATTG 57.188 42.857 8.83 3.24 0.00 2.32
165 167 2.011540 TACATGCGCGGACAATTGTA 57.988 45.000 11.95 8.07 0.00 2.41
167 169 2.556257 ACATGCGCGGACAATTGTATA 58.444 42.857 11.95 0.00 0.00 1.47
168 170 2.286833 ACATGCGCGGACAATTGTATAC 59.713 45.455 11.95 4.26 0.00 1.47
169 171 2.303163 TGCGCGGACAATTGTATACT 57.697 45.000 11.95 0.00 0.00 2.12
170 172 2.198406 TGCGCGGACAATTGTATACTC 58.802 47.619 11.95 0.00 0.00 2.59
171 173 1.525619 GCGCGGACAATTGTATACTCC 59.474 52.381 11.95 7.13 0.00 3.85
172 174 2.816689 CGCGGACAATTGTATACTCCA 58.183 47.619 11.95 0.00 0.00 3.86
173 175 3.191669 CGCGGACAATTGTATACTCCAA 58.808 45.455 11.95 0.00 0.00 3.53
174 176 3.807622 CGCGGACAATTGTATACTCCAAT 59.192 43.478 11.95 0.00 34.07 3.16
175 177 4.272504 CGCGGACAATTGTATACTCCAATT 59.727 41.667 11.95 0.00 41.84 2.32
176 178 5.220777 CGCGGACAATTGTATACTCCAATTT 60.221 40.000 11.95 0.00 39.77 1.82
177 179 6.560711 GCGGACAATTGTATACTCCAATTTT 58.439 36.000 11.95 0.00 39.77 1.82
178 180 7.466185 CGCGGACAATTGTATACTCCAATTTTA 60.466 37.037 11.95 0.00 39.77 1.52
179 181 8.349983 GCGGACAATTGTATACTCCAATTTTAT 58.650 33.333 11.95 0.00 39.77 1.40
189 191 9.852091 GTATACTCCAATTTTATACTACCTCCG 57.148 37.037 0.00 0.00 0.00 4.63
190 192 6.803366 ACTCCAATTTTATACTACCTCCGT 57.197 37.500 0.00 0.00 0.00 4.69
191 193 6.814043 ACTCCAATTTTATACTACCTCCGTC 58.186 40.000 0.00 0.00 0.00 4.79
192 194 6.165700 TCCAATTTTATACTACCTCCGTCC 57.834 41.667 0.00 0.00 0.00 4.79
193 195 5.901276 TCCAATTTTATACTACCTCCGTCCT 59.099 40.000 0.00 0.00 0.00 3.85
194 196 5.989777 CCAATTTTATACTACCTCCGTCCTG 59.010 44.000 0.00 0.00 0.00 3.86
195 197 5.803237 ATTTTATACTACCTCCGTCCTGG 57.197 43.478 0.00 0.00 40.09 4.45
196 198 3.959495 TTATACTACCTCCGTCCTGGT 57.041 47.619 0.00 0.00 39.52 4.00
197 199 2.842645 ATACTACCTCCGTCCTGGTT 57.157 50.000 0.00 0.00 39.52 3.67
198 200 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
199 201 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
200 202 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
201 203 4.255510 ACTACCTCCGTCCTGGTTTATA 57.744 45.455 0.00 0.00 39.52 0.98
202 204 4.213513 ACTACCTCCGTCCTGGTTTATAG 58.786 47.826 0.00 0.00 39.52 1.31
203 205 3.393426 ACCTCCGTCCTGGTTTATAGA 57.607 47.619 0.00 0.00 39.52 1.98
204 206 3.924922 ACCTCCGTCCTGGTTTATAGAT 58.075 45.455 0.00 0.00 39.52 1.98
205 207 3.896272 ACCTCCGTCCTGGTTTATAGATC 59.104 47.826 0.00 0.00 39.52 2.75
206 208 3.258622 CCTCCGTCCTGGTTTATAGATCC 59.741 52.174 0.00 0.00 39.52 3.36
207 209 3.236896 TCCGTCCTGGTTTATAGATCCC 58.763 50.000 0.00 0.00 39.52 3.85
208 210 2.302157 CCGTCCTGGTTTATAGATCCCC 59.698 54.545 0.00 0.00 0.00 4.81
209 211 3.240302 CGTCCTGGTTTATAGATCCCCT 58.760 50.000 0.00 0.00 0.00 4.79
210 212 3.646637 CGTCCTGGTTTATAGATCCCCTT 59.353 47.826 0.00 0.00 0.00 3.95
211 213 4.102681 CGTCCTGGTTTATAGATCCCCTTT 59.897 45.833 0.00 0.00 0.00 3.11
212 214 5.377478 GTCCTGGTTTATAGATCCCCTTTG 58.623 45.833 0.00 0.00 0.00 2.77
213 215 5.043762 TCCTGGTTTATAGATCCCCTTTGT 58.956 41.667 0.00 0.00 0.00 2.83
214 216 6.100714 GTCCTGGTTTATAGATCCCCTTTGTA 59.899 42.308 0.00 0.00 0.00 2.41
215 217 6.329197 TCCTGGTTTATAGATCCCCTTTGTAG 59.671 42.308 0.00 0.00 0.00 2.74
216 218 6.101296 CCTGGTTTATAGATCCCCTTTGTAGT 59.899 42.308 0.00 0.00 0.00 2.73
217 219 7.366551 CCTGGTTTATAGATCCCCTTTGTAGTT 60.367 40.741 0.00 0.00 0.00 2.24
218 220 7.935405 TGGTTTATAGATCCCCTTTGTAGTTT 58.065 34.615 0.00 0.00 0.00 2.66
219 221 7.832187 TGGTTTATAGATCCCCTTTGTAGTTTG 59.168 37.037 0.00 0.00 0.00 2.93
220 222 7.832685 GGTTTATAGATCCCCTTTGTAGTTTGT 59.167 37.037 0.00 0.00 0.00 2.83
221 223 8.674607 GTTTATAGATCCCCTTTGTAGTTTGTG 58.325 37.037 0.00 0.00 0.00 3.33
222 224 3.421844 AGATCCCCTTTGTAGTTTGTGC 58.578 45.455 0.00 0.00 0.00 4.57
223 225 3.074538 AGATCCCCTTTGTAGTTTGTGCT 59.925 43.478 0.00 0.00 0.00 4.40
224 226 4.288626 AGATCCCCTTTGTAGTTTGTGCTA 59.711 41.667 0.00 0.00 0.00 3.49
225 227 4.440826 TCCCCTTTGTAGTTTGTGCTAA 57.559 40.909 0.00 0.00 0.00 3.09
226 228 4.794334 TCCCCTTTGTAGTTTGTGCTAAA 58.206 39.130 0.00 0.00 0.00 1.85
227 229 5.390387 TCCCCTTTGTAGTTTGTGCTAAAT 58.610 37.500 0.00 0.00 0.00 1.40
228 230 5.836358 TCCCCTTTGTAGTTTGTGCTAAATT 59.164 36.000 0.00 0.00 0.00 1.82
229 231 6.325286 TCCCCTTTGTAGTTTGTGCTAAATTT 59.675 34.615 0.00 0.00 0.00 1.82
230 232 6.989759 CCCCTTTGTAGTTTGTGCTAAATTTT 59.010 34.615 0.00 0.00 0.00 1.82
231 233 7.042119 CCCCTTTGTAGTTTGTGCTAAATTTTG 60.042 37.037 0.00 0.00 0.00 2.44
232 234 7.708752 CCCTTTGTAGTTTGTGCTAAATTTTGA 59.291 33.333 3.69 0.00 0.00 2.69
233 235 8.539674 CCTTTGTAGTTTGTGCTAAATTTTGAC 58.460 33.333 3.69 0.67 0.00 3.18
234 236 9.301153 CTTTGTAGTTTGTGCTAAATTTTGACT 57.699 29.630 3.69 0.83 0.00 3.41
266 268 9.988815 TTTACCTAACAAAATGTTAATGCATGT 57.011 25.926 0.00 0.00 41.70 3.21
267 269 9.632807 TTACCTAACAAAATGTTAATGCATGTC 57.367 29.630 0.00 0.00 41.70 3.06
268 270 7.665690 ACCTAACAAAATGTTAATGCATGTCA 58.334 30.769 0.00 0.14 41.70 3.58
269 271 8.147058 ACCTAACAAAATGTTAATGCATGTCAA 58.853 29.630 0.00 0.00 41.70 3.18
270 272 8.649841 CCTAACAAAATGTTAATGCATGTCAAG 58.350 33.333 0.00 0.00 41.70 3.02
271 273 9.409312 CTAACAAAATGTTAATGCATGTCAAGA 57.591 29.630 0.00 0.00 41.70 3.02
272 274 7.878477 ACAAAATGTTAATGCATGTCAAGAG 57.122 32.000 0.00 0.00 0.00 2.85
273 275 7.660112 ACAAAATGTTAATGCATGTCAAGAGA 58.340 30.769 0.00 0.00 0.00 3.10
274 276 8.143193 ACAAAATGTTAATGCATGTCAAGAGAA 58.857 29.630 0.00 0.00 0.00 2.87
275 277 8.980610 CAAAATGTTAATGCATGTCAAGAGAAA 58.019 29.630 0.00 0.00 0.00 2.52
276 278 9.715121 AAAATGTTAATGCATGTCAAGAGAAAT 57.285 25.926 0.00 0.00 0.00 2.17
277 279 9.715121 AAATGTTAATGCATGTCAAGAGAAATT 57.285 25.926 0.00 0.00 0.00 1.82
302 304 7.864108 ATCTCATTGGATTCGTATTTGAACA 57.136 32.000 0.00 0.00 0.00 3.18
303 305 7.864108 TCTCATTGGATTCGTATTTGAACAT 57.136 32.000 0.00 0.00 0.00 2.71
304 306 8.956533 TCTCATTGGATTCGTATTTGAACATA 57.043 30.769 0.00 0.00 0.00 2.29
305 307 9.045223 TCTCATTGGATTCGTATTTGAACATAG 57.955 33.333 0.00 0.00 0.00 2.23
306 308 8.731275 TCATTGGATTCGTATTTGAACATAGT 57.269 30.769 0.00 0.00 0.00 2.12
307 309 9.173021 TCATTGGATTCGTATTTGAACATAGTT 57.827 29.630 0.00 0.00 0.00 2.24
308 310 9.787532 CATTGGATTCGTATTTGAACATAGTTT 57.212 29.630 0.00 0.00 0.00 2.66
310 312 9.834628 TTGGATTCGTATTTGAACATAGTTTTC 57.165 29.630 0.00 0.00 0.00 2.29
311 313 9.004717 TGGATTCGTATTTGAACATAGTTTTCA 57.995 29.630 0.00 0.00 0.00 2.69
312 314 9.834628 GGATTCGTATTTGAACATAGTTTTCAA 57.165 29.630 0.00 0.00 40.42 2.69
335 337 9.149225 TCAAAAATATAATGTTTGGTGACATGC 57.851 29.630 0.00 0.00 40.03 4.06
336 338 7.754069 AAAATATAATGTTTGGTGACATGCG 57.246 32.000 0.00 0.00 40.03 4.73
337 339 6.449635 AATATAATGTTTGGTGACATGCGT 57.550 33.333 0.00 0.00 40.03 5.24
338 340 2.420628 AATGTTTGGTGACATGCGTG 57.579 45.000 3.82 3.82 40.03 5.34
339 341 1.603456 ATGTTTGGTGACATGCGTGA 58.397 45.000 14.17 0.00 42.32 4.35
340 342 1.383523 TGTTTGGTGACATGCGTGAA 58.616 45.000 14.17 0.00 42.32 3.18
341 343 1.064803 TGTTTGGTGACATGCGTGAAC 59.935 47.619 14.17 10.22 42.32 3.18
342 344 1.064803 GTTTGGTGACATGCGTGAACA 59.935 47.619 14.17 9.53 42.32 3.18
343 345 1.603456 TTGGTGACATGCGTGAACAT 58.397 45.000 14.17 0.00 42.32 2.71
344 346 1.603456 TGGTGACATGCGTGAACATT 58.397 45.000 14.17 0.00 33.40 2.71
345 347 1.952990 TGGTGACATGCGTGAACATTT 59.047 42.857 14.17 0.00 33.40 2.32
346 348 2.360483 TGGTGACATGCGTGAACATTTT 59.640 40.909 14.17 0.00 33.40 1.82
347 349 2.725723 GGTGACATGCGTGAACATTTTG 59.274 45.455 14.17 0.00 0.00 2.44
348 350 3.371168 GTGACATGCGTGAACATTTTGT 58.629 40.909 14.17 0.00 0.00 2.83
349 351 3.796178 GTGACATGCGTGAACATTTTGTT 59.204 39.130 14.17 0.00 44.37 2.83
350 352 4.973051 GTGACATGCGTGAACATTTTGTTA 59.027 37.500 14.17 0.00 41.28 2.41
351 353 5.115472 GTGACATGCGTGAACATTTTGTTAG 59.885 40.000 14.17 0.00 41.28 2.34
352 354 5.181690 ACATGCGTGAACATTTTGTTAGT 57.818 34.783 14.17 0.00 41.28 2.24
353 355 5.587289 ACATGCGTGAACATTTTGTTAGTT 58.413 33.333 14.17 0.00 41.28 2.24
354 356 6.039616 ACATGCGTGAACATTTTGTTAGTTT 58.960 32.000 14.17 0.00 41.28 2.66
355 357 7.197017 ACATGCGTGAACATTTTGTTAGTTTA 58.803 30.769 14.17 0.00 41.28 2.01
356 358 7.702772 ACATGCGTGAACATTTTGTTAGTTTAA 59.297 29.630 14.17 0.00 41.28 1.52
357 359 8.698854 CATGCGTGAACATTTTGTTAGTTTAAT 58.301 29.630 0.00 0.00 41.28 1.40
358 360 8.276060 TGCGTGAACATTTTGTTAGTTTAATC 57.724 30.769 0.00 0.00 41.28 1.75
359 361 8.132362 TGCGTGAACATTTTGTTAGTTTAATCT 58.868 29.630 0.00 0.00 41.28 2.40
360 362 9.601971 GCGTGAACATTTTGTTAGTTTAATCTA 57.398 29.630 0.00 0.00 41.28 1.98
376 378 8.592809 AGTTTAATCTATGGTCAAAATTTGGCA 58.407 29.630 12.62 0.00 36.88 4.92
377 379 8.655970 GTTTAATCTATGGTCAAAATTTGGCAC 58.344 33.333 12.62 1.03 36.88 5.01
378 380 4.433186 TCTATGGTCAAAATTTGGCACG 57.567 40.909 12.62 0.00 36.88 5.34
379 381 4.075682 TCTATGGTCAAAATTTGGCACGA 58.924 39.130 12.62 0.00 36.88 4.35
380 382 3.742433 ATGGTCAAAATTTGGCACGAA 57.258 38.095 12.62 0.00 36.88 3.85
381 383 3.526931 TGGTCAAAATTTGGCACGAAA 57.473 38.095 12.62 0.00 36.88 3.46
382 384 4.065321 TGGTCAAAATTTGGCACGAAAT 57.935 36.364 12.62 0.00 36.88 2.17
383 385 5.201713 TGGTCAAAATTTGGCACGAAATA 57.798 34.783 12.62 0.00 36.88 1.40
384 386 4.985409 TGGTCAAAATTTGGCACGAAATAC 59.015 37.500 12.62 0.00 36.88 1.89
385 387 4.985409 GGTCAAAATTTGGCACGAAATACA 59.015 37.500 12.62 0.00 36.88 2.29
386 388 5.463724 GGTCAAAATTTGGCACGAAATACAA 59.536 36.000 12.62 0.00 36.88 2.41
387 389 6.147000 GGTCAAAATTTGGCACGAAATACAAT 59.853 34.615 12.62 0.00 36.88 2.71
388 390 7.008859 GTCAAAATTTGGCACGAAATACAATG 58.991 34.615 5.33 0.00 34.79 2.82
389 391 6.146837 TCAAAATTTGGCACGAAATACAATGG 59.853 34.615 5.83 0.00 0.00 3.16
390 392 3.584406 TTTGGCACGAAATACAATGGG 57.416 42.857 0.00 0.00 0.00 4.00
391 393 1.468985 TGGCACGAAATACAATGGGG 58.531 50.000 0.00 0.00 0.00 4.96
392 394 1.004862 TGGCACGAAATACAATGGGGA 59.995 47.619 0.00 0.00 0.00 4.81
393 395 1.404035 GGCACGAAATACAATGGGGAC 59.596 52.381 0.00 0.00 0.00 4.46
407 409 3.179925 GGGACCAATAAACCCGGAC 57.820 57.895 0.73 0.00 34.03 4.79
408 410 0.745486 GGGACCAATAAACCCGGACG 60.745 60.000 0.73 0.00 34.03 4.79
409 411 0.745486 GGACCAATAAACCCGGACGG 60.745 60.000 0.73 3.25 37.81 4.79
410 412 0.249955 GACCAATAAACCCGGACGGA 59.750 55.000 13.13 0.00 37.50 4.69
411 413 0.251073 ACCAATAAACCCGGACGGAG 59.749 55.000 13.13 5.04 37.50 4.63
412 414 0.463116 CCAATAAACCCGGACGGAGG 60.463 60.000 13.13 0.00 37.50 4.30
413 415 0.251073 CAATAAACCCGGACGGAGGT 59.749 55.000 13.13 0.00 38.27 3.85
414 416 1.481772 CAATAAACCCGGACGGAGGTA 59.518 52.381 13.13 1.24 34.45 3.08
415 417 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
416 418 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.00 34.45 2.73
417 419 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.00 34.45 1.82
418 420 0.259938 AACCCGGACGGAGGTAGTAT 59.740 55.000 13.13 0.00 34.45 2.12
419 421 0.259938 ACCCGGACGGAGGTAGTATT 59.740 55.000 13.13 0.00 37.50 1.89
420 422 1.494721 ACCCGGACGGAGGTAGTATTA 59.505 52.381 13.13 0.00 37.50 0.98
421 423 2.091885 ACCCGGACGGAGGTAGTATTAA 60.092 50.000 13.13 0.00 37.50 1.40
422 424 2.294512 CCCGGACGGAGGTAGTATTAAC 59.705 54.545 13.13 0.00 37.50 2.01
423 425 3.217626 CCGGACGGAGGTAGTATTAACT 58.782 50.000 4.40 0.00 37.30 2.24
424 426 3.633986 CCGGACGGAGGTAGTATTAACTT 59.366 47.826 4.40 0.00 35.72 2.66
425 427 4.098501 CCGGACGGAGGTAGTATTAACTTT 59.901 45.833 4.40 0.00 35.72 2.66
426 428 5.299279 CCGGACGGAGGTAGTATTAACTTTA 59.701 44.000 4.40 0.00 35.72 1.85
427 429 6.183360 CCGGACGGAGGTAGTATTAACTTTAA 60.183 42.308 4.40 0.00 35.72 1.52
428 430 7.428826 CGGACGGAGGTAGTATTAACTTTAAT 58.571 38.462 0.15 0.15 37.15 1.40
429 431 8.567948 CGGACGGAGGTAGTATTAACTTTAATA 58.432 37.037 0.00 0.00 37.15 0.98
455 457 9.561069 ACAAAGTTGTATTAAGATTGAGACACT 57.439 29.630 0.00 0.00 40.16 3.55
468 470 8.480643 AGATTGAGACACTTATTTTAAGACGG 57.519 34.615 1.47 0.00 0.00 4.79
469 471 8.311836 AGATTGAGACACTTATTTTAAGACGGA 58.688 33.333 1.47 0.00 0.00 4.69
470 472 7.884816 TTGAGACACTTATTTTAAGACGGAG 57.115 36.000 1.47 0.00 0.00 4.63
471 473 6.395629 TGAGACACTTATTTTAAGACGGAGG 58.604 40.000 1.47 0.00 0.00 4.30
472 474 6.014840 TGAGACACTTATTTTAAGACGGAGGT 60.015 38.462 1.47 0.00 0.00 3.85
473 475 7.177216 TGAGACACTTATTTTAAGACGGAGGTA 59.823 37.037 1.47 0.00 0.00 3.08
484 486 7.624360 TTAAGACGGAGGTAATACTAACGAA 57.376 36.000 0.00 0.00 0.00 3.85
576 585 5.812127 TGTTATTCATTCTCGATGTGACCTG 59.188 40.000 0.00 0.00 37.06 4.00
619 628 4.630069 GGTATAGTCTTCGAAAGCTGCAAA 59.370 41.667 1.02 0.00 0.00 3.68
633 642 3.080319 GCTGCAAAGGATCAAAGAGAGT 58.920 45.455 0.00 0.00 0.00 3.24
661 670 2.553602 ACGCTCAAATGCTCATGACAAA 59.446 40.909 0.00 0.00 0.00 2.83
726 735 6.453092 TGTTAAGTTTCACTGACCTAGCTAC 58.547 40.000 0.00 0.00 0.00 3.58
802 817 6.886459 AGCATAAAGTATGTCCACACAAGAAT 59.114 34.615 0.00 0.00 38.43 2.40
814 829 2.002586 CACAAGAATCCTAGCCACACG 58.997 52.381 0.00 0.00 0.00 4.49
821 836 2.851263 TCCTAGCCACACGAAACAAT 57.149 45.000 0.00 0.00 0.00 2.71
822 837 3.965379 TCCTAGCCACACGAAACAATA 57.035 42.857 0.00 0.00 0.00 1.90
823 838 3.592059 TCCTAGCCACACGAAACAATAC 58.408 45.455 0.00 0.00 0.00 1.89
860 875 7.717875 TGTACTAGTTAATGTTAATCCCATGCC 59.282 37.037 0.00 0.00 0.00 4.40
891 906 3.536158 TTAATCTTTGCAGCACGTGTC 57.464 42.857 18.38 9.62 0.00 3.67
908 923 8.894731 AGCACGTGTCTGTATTATCCTATATAG 58.105 37.037 18.38 2.46 0.00 1.31
1029 1044 1.376037 GCTTAGTGTTGGAGCGCCT 60.376 57.895 8.34 0.00 34.31 5.52
1030 1045 0.955919 GCTTAGTGTTGGAGCGCCTT 60.956 55.000 8.34 0.00 34.31 4.35
1031 1046 1.674817 GCTTAGTGTTGGAGCGCCTTA 60.675 52.381 8.34 0.00 34.31 2.69
1226 1241 4.838152 CCGGCGGTCTCACATGGG 62.838 72.222 19.97 0.00 0.00 4.00
1508 1523 0.182061 TCGACTGGGGCGACTACTAT 59.818 55.000 0.00 0.00 32.09 2.12
1512 1527 2.694109 GACTGGGGCGACTACTATTTCT 59.306 50.000 0.00 0.00 0.00 2.52
1950 1965 2.436109 GGGCTGCAGGTGAGGAAA 59.564 61.111 17.12 0.00 0.00 3.13
2073 2088 3.081061 ACGTTACGTGTATGTGGTAGGA 58.919 45.455 10.39 0.00 39.18 2.94
2078 2093 1.403116 CGTGTATGTGGTAGGAACGCA 60.403 52.381 0.00 0.00 0.00 5.24
2114 2129 6.042777 GCGACAGCATACACATATGGTATAT 58.957 40.000 7.80 0.00 45.64 0.86
2135 2150 2.236146 TGCACCCGTGAGTTGATAGAAT 59.764 45.455 0.00 0.00 0.00 2.40
2359 2411 2.545113 GGGAAAAAGCAGGGAACGAAAC 60.545 50.000 0.00 0.00 0.00 2.78
2360 2412 2.381589 GAAAAAGCAGGGAACGAAACG 58.618 47.619 0.00 0.00 0.00 3.60
2414 2467 3.705043 GGGTATCGACACGTATCAGTT 57.295 47.619 0.00 0.00 0.00 3.16
2472 2528 3.185797 CCAACTAACAAAGTGTAGGCGTC 59.814 47.826 0.00 0.00 38.88 5.19
2492 2548 3.877508 GTCTCCTATTGATTGTTTCCCGG 59.122 47.826 0.00 0.00 0.00 5.73
2581 2637 9.715123 GTTCTCTTCTTCTTCTTCTTCTTTTTG 57.285 33.333 0.00 0.00 0.00 2.44
2582 2638 9.672673 TTCTCTTCTTCTTCTTCTTCTTTTTGA 57.327 29.630 0.00 0.00 0.00 2.69
2583 2639 9.672673 TCTCTTCTTCTTCTTCTTCTTTTTGAA 57.327 29.630 0.00 0.00 0.00 2.69
2585 2641 8.678199 TCTTCTTCTTCTTCTTCTTTTTGAACC 58.322 33.333 0.00 0.00 0.00 3.62
2586 2642 7.334844 TCTTCTTCTTCTTCTTTTTGAACCC 57.665 36.000 0.00 0.00 0.00 4.11
2587 2643 5.751243 TCTTCTTCTTCTTTTTGAACCCG 57.249 39.130 0.00 0.00 0.00 5.28
2588 2644 5.190677 TCTTCTTCTTCTTTTTGAACCCGT 58.809 37.500 0.00 0.00 0.00 5.28
2589 2645 5.650703 TCTTCTTCTTCTTTTTGAACCCGTT 59.349 36.000 0.00 0.00 0.00 4.44
2590 2646 5.907866 TCTTCTTCTTTTTGAACCCGTTT 57.092 34.783 0.00 0.00 0.00 3.60
2591 2647 5.646606 TCTTCTTCTTTTTGAACCCGTTTG 58.353 37.500 0.00 0.00 0.00 2.93
2592 2648 5.184287 TCTTCTTCTTTTTGAACCCGTTTGT 59.816 36.000 0.00 0.00 0.00 2.83
2593 2649 5.394224 TCTTCTTTTTGAACCCGTTTGTT 57.606 34.783 0.00 0.00 0.00 2.83
2594 2650 5.785243 TCTTCTTTTTGAACCCGTTTGTTT 58.215 33.333 0.00 0.00 0.00 2.83
2595 2651 6.224584 TCTTCTTTTTGAACCCGTTTGTTTT 58.775 32.000 0.00 0.00 0.00 2.43
2596 2652 6.366604 TCTTCTTTTTGAACCCGTTTGTTTTC 59.633 34.615 0.00 0.00 0.00 2.29
2597 2653 5.785243 TCTTTTTGAACCCGTTTGTTTTCT 58.215 33.333 0.00 0.00 0.00 2.52
2598 2654 5.865013 TCTTTTTGAACCCGTTTGTTTTCTC 59.135 36.000 0.00 0.00 0.00 2.87
2599 2655 4.785511 TTTGAACCCGTTTGTTTTCTCA 57.214 36.364 0.00 0.00 0.00 3.27
2622 2678 7.210174 TCATTCTTCTGGTGTCTATAATTCCG 58.790 38.462 0.00 0.00 0.00 4.30
2658 2714 1.678627 CACATCCAAACCACGGTTTCA 59.321 47.619 11.28 2.12 45.32 2.69
2983 3141 8.051901 AGCTTTTTGGTGTATAGTTTATGTCC 57.948 34.615 0.00 0.00 0.00 4.02
3240 3399 8.827177 TTACGTTCATGTGAGTAAGAAGAAAT 57.173 30.769 0.00 0.00 0.00 2.17
3302 3461 1.472201 CCGCAGATGCTCACATACACT 60.472 52.381 2.95 0.00 36.35 3.55
3305 3464 3.464907 GCAGATGCTCACATACACTCAT 58.535 45.455 0.00 0.00 36.35 2.90
3306 3465 3.875727 GCAGATGCTCACATACACTCATT 59.124 43.478 0.00 0.00 36.35 2.57
3307 3466 4.025061 GCAGATGCTCACATACACTCATTC 60.025 45.833 0.00 0.00 36.35 2.67
3308 3467 4.510711 CAGATGCTCACATACACTCATTCC 59.489 45.833 0.00 0.00 36.35 3.01
3309 3468 4.408270 AGATGCTCACATACACTCATTCCT 59.592 41.667 0.00 0.00 36.35 3.36
3312 3471 6.976934 TGCTCACATACACTCATTCCTATA 57.023 37.500 0.00 0.00 0.00 1.31
3313 3472 7.360113 TGCTCACATACACTCATTCCTATAA 57.640 36.000 0.00 0.00 0.00 0.98
3315 3474 8.264347 TGCTCACATACACTCATTCCTATAAAA 58.736 33.333 0.00 0.00 0.00 1.52
3316 3475 9.109393 GCTCACATACACTCATTCCTATAAAAA 57.891 33.333 0.00 0.00 0.00 1.94
3318 3477 9.952030 TCACATACACTCATTCCTATAAAAACA 57.048 29.630 0.00 0.00 0.00 2.83
3319 3478 9.988350 CACATACACTCATTCCTATAAAAACAC 57.012 33.333 0.00 0.00 0.00 3.32
3362 3533 9.196552 CGTATGAGCATCTTTGAGATAATACAA 57.803 33.333 0.00 0.00 32.12 2.41
3418 3649 5.761234 TGTAGTCCACAAAGAACATAACCAC 59.239 40.000 0.00 0.00 32.95 4.16
3424 3655 6.001460 CCACAAAGAACATAACCACCTAAGA 58.999 40.000 0.00 0.00 0.00 2.10
3431 3662 6.832384 AGAACATAACCACCTAAGATACTCGA 59.168 38.462 0.00 0.00 0.00 4.04
3464 3697 5.818857 ACGTATGTCTTTTGGTGTGTAACTT 59.181 36.000 0.00 0.00 38.04 2.66
3465 3698 6.133392 CGTATGTCTTTTGGTGTGTAACTTG 58.867 40.000 0.00 0.00 38.04 3.16
3481 4372 6.860023 GTGTAACTTGACTGTTGTAGACGTAT 59.140 38.462 0.00 0.00 0.00 3.06
3528 4419 6.787043 CGCTGCAATAACAAAAAGAAAATGAC 59.213 34.615 0.00 0.00 0.00 3.06
3531 4422 9.985318 CTGCAATAACAAAAAGAAAATGACAAA 57.015 25.926 0.00 0.00 0.00 2.83
3570 4461 4.013397 CACGCGCTTCTATAACGAAAAAG 58.987 43.478 5.73 0.00 0.00 2.27
3695 4587 6.128254 GGCTTCTGTAAAAAGGCTACTACTTG 60.128 42.308 2.54 0.00 43.75 3.16
3750 4642 0.036022 AGCAAGGTCTCAACTCAGGC 59.964 55.000 0.00 0.00 0.00 4.85
3845 4738 2.922758 GCAAGTGACACCTACTCTGTCG 60.923 54.545 0.84 0.00 40.92 4.35
3847 4740 0.882474 GTGACACCTACTCTGTCGCT 59.118 55.000 0.00 0.00 43.10 4.93
3880 4773 7.502060 TCCTTTCTTTTCATATCTCTCCACT 57.498 36.000 0.00 0.00 0.00 4.00
3961 4863 6.198966 CCTACGCCTTTGATTATTTTGCATTC 59.801 38.462 0.00 0.00 0.00 2.67
3979 4881 2.282391 GATGGTGCCACAGTGCCA 60.282 61.111 0.00 1.26 35.28 4.92
3988 4890 0.529337 CCACAGTGCCAGAGCTATCG 60.529 60.000 0.00 0.00 40.80 2.92
4005 4907 4.322349 GCTATCGCCCATCAAGTCTATTCT 60.322 45.833 0.00 0.00 0.00 2.40
4021 4923 1.130054 TTCTGCACCTGAGCTCCCTT 61.130 55.000 12.15 0.00 34.99 3.95
4088 4990 4.479619 GTGTACTGTTTACGACTCGGAAT 58.520 43.478 2.98 0.00 26.63 3.01
4089 4991 4.556523 GTGTACTGTTTACGACTCGGAATC 59.443 45.833 2.98 0.41 26.63 2.52
4109 5012 6.640907 GGAATCAACTGCAAAAACGTCTTATT 59.359 34.615 0.00 0.00 0.00 1.40
4112 5015 7.215696 TCAACTGCAAAAACGTCTTATTTTG 57.784 32.000 15.55 15.55 45.07 2.44
4113 5016 6.254589 TCAACTGCAAAAACGTCTTATTTTGG 59.745 34.615 19.42 10.01 43.41 3.28
4114 5017 5.656480 ACTGCAAAAACGTCTTATTTTGGT 58.344 33.333 19.42 10.48 43.41 3.67
4121 5024 9.337091 CAAAAACGTCTTATTTTGGTGTATAGG 57.663 33.333 13.07 0.00 40.90 2.57
4161 5064 6.976925 GGTGTATTAGTCTTAACTGCGTATGT 59.023 38.462 0.00 0.00 36.92 2.29
4162 5065 8.131100 GGTGTATTAGTCTTAACTGCGTATGTA 58.869 37.037 0.00 0.00 36.92 2.29
4421 5324 0.179059 TCTCTGCAGAACGCCAACAA 60.179 50.000 18.85 0.00 41.33 2.83
4487 5390 1.222113 GCCTGCTACTCCCTTGTCC 59.778 63.158 0.00 0.00 0.00 4.02
4507 5410 4.639906 TGCATGCGCACCACTCCA 62.640 61.111 14.90 0.22 45.36 3.86
4514 5417 0.378257 GCGCACCACTCCATTGTATG 59.622 55.000 0.30 0.00 0.00 2.39
4518 5421 1.398041 CACCACTCCATTGTATGCGTG 59.602 52.381 0.00 0.00 33.07 5.34
4520 5423 0.378257 CACTCCATTGTATGCGTGGC 59.622 55.000 0.93 0.00 33.01 5.01
4521 5424 0.748005 ACTCCATTGTATGCGTGGCC 60.748 55.000 0.00 0.00 33.01 5.36
4523 5426 2.715005 CATTGTATGCGTGGCCGG 59.285 61.111 0.00 0.00 33.68 6.13
4524 5427 2.112198 CATTGTATGCGTGGCCGGT 61.112 57.895 1.90 0.00 33.68 5.28
4525 5428 2.112198 ATTGTATGCGTGGCCGGTG 61.112 57.895 1.90 0.00 33.68 4.94
4526 5429 2.529454 ATTGTATGCGTGGCCGGTGA 62.529 55.000 1.90 0.00 33.68 4.02
4527 5430 2.435234 GTATGCGTGGCCGGTGAA 60.435 61.111 1.90 0.00 33.68 3.18
4528 5431 2.125310 TATGCGTGGCCGGTGAAG 60.125 61.111 1.90 0.00 33.68 3.02
4529 5432 2.651105 TATGCGTGGCCGGTGAAGA 61.651 57.895 1.90 0.00 33.68 2.87
4530 5433 2.845752 TATGCGTGGCCGGTGAAGAC 62.846 60.000 1.90 0.00 33.68 3.01
4533 5440 3.041940 GTGGCCGGTGAAGACGTG 61.042 66.667 1.90 0.00 0.00 4.49
4627 5536 9.180678 CATGTTAACTTGATCAGTTTGTTTACC 57.819 33.333 14.67 4.04 43.89 2.85
4673 5582 5.986135 GGAGACTGCTCATTCGTTATGTTAT 59.014 40.000 0.00 0.00 43.14 1.89
4772 5684 4.214310 CATTTCCCTGGCCAATATGTGTA 58.786 43.478 7.01 0.00 0.00 2.90
4782 5694 8.137437 CCTGGCCAATATGTGTAATAAGAAAAG 58.863 37.037 7.01 0.00 0.00 2.27
4807 5719 1.524008 GGGGACAAAAGAGGCCAACG 61.524 60.000 5.01 0.00 0.00 4.10
4821 5733 2.096013 GGCCAACGTCTATTTCAGAAGC 59.904 50.000 0.00 0.00 36.32 3.86
4824 5736 4.320202 GCCAACGTCTATTTCAGAAGCAAA 60.320 41.667 0.00 0.00 36.32 3.68
4826 5738 6.381801 CCAACGTCTATTTCAGAAGCAAAAT 58.618 36.000 0.00 0.00 36.32 1.82
4827 5739 6.306356 CCAACGTCTATTTCAGAAGCAAAATG 59.694 38.462 0.00 0.00 36.32 2.32
4830 5742 6.024049 CGTCTATTTCAGAAGCAAAATGGAC 58.976 40.000 11.85 11.85 43.88 4.02
4831 5743 6.024049 GTCTATTTCAGAAGCAAAATGGACG 58.976 40.000 8.05 0.00 40.84 4.79
4832 5744 4.853924 ATTTCAGAAGCAAAATGGACGT 57.146 36.364 0.00 0.00 0.00 4.34
4834 5746 3.624326 TCAGAAGCAAAATGGACGTTG 57.376 42.857 0.00 0.00 0.00 4.10
4835 5747 2.948979 TCAGAAGCAAAATGGACGTTGT 59.051 40.909 0.00 0.00 0.00 3.32
4836 5748 3.003275 TCAGAAGCAAAATGGACGTTGTC 59.997 43.478 0.00 0.00 0.00 3.18
4849 5761 3.910648 GACGTTGTCCTAAGCTAGTGTT 58.089 45.455 0.00 0.00 0.00 3.32
4850 5762 3.910648 ACGTTGTCCTAAGCTAGTGTTC 58.089 45.455 0.00 0.00 0.00 3.18
4851 5763 3.573110 ACGTTGTCCTAAGCTAGTGTTCT 59.427 43.478 0.00 0.00 0.00 3.01
4852 5764 4.167268 CGTTGTCCTAAGCTAGTGTTCTC 58.833 47.826 0.00 0.00 0.00 2.87
4853 5765 4.321008 CGTTGTCCTAAGCTAGTGTTCTCA 60.321 45.833 0.00 0.00 0.00 3.27
4854 5766 5.622460 CGTTGTCCTAAGCTAGTGTTCTCAT 60.622 44.000 0.00 0.00 0.00 2.90
4855 5767 6.404403 CGTTGTCCTAAGCTAGTGTTCTCATA 60.404 42.308 0.00 0.00 0.00 2.15
4856 5768 7.493367 GTTGTCCTAAGCTAGTGTTCTCATAT 58.507 38.462 0.00 0.00 0.00 1.78
4857 5769 7.661536 TGTCCTAAGCTAGTGTTCTCATATT 57.338 36.000 0.00 0.00 0.00 1.28
4858 5770 7.492524 TGTCCTAAGCTAGTGTTCTCATATTG 58.507 38.462 0.00 0.00 0.00 1.90
4859 5771 6.926272 GTCCTAAGCTAGTGTTCTCATATTGG 59.074 42.308 0.00 0.00 0.00 3.16
4860 5772 6.611642 TCCTAAGCTAGTGTTCTCATATTGGT 59.388 38.462 0.00 0.00 0.00 3.67
4861 5773 7.125811 TCCTAAGCTAGTGTTCTCATATTGGTT 59.874 37.037 0.00 0.00 0.00 3.67
4866 5778 6.989169 GCTAGTGTTCTCATATTGGTTCTCAT 59.011 38.462 0.00 0.00 0.00 2.90
4867 5779 8.144478 GCTAGTGTTCTCATATTGGTTCTCATA 58.856 37.037 0.00 0.00 0.00 2.15
4916 6106 2.027751 GGGAGGCATAGCGACGTC 59.972 66.667 5.18 5.18 0.00 4.34
4926 6116 3.487042 GCATAGCGACGTCTCAGAGTTAA 60.487 47.826 14.70 0.00 0.00 2.01
4935 6125 6.581542 CGACGTCTCAGAGTTAAAATAGTGTT 59.418 38.462 14.70 0.00 0.00 3.32
4940 6130 5.484715 TCAGAGTTAAAATAGTGTTCCCCG 58.515 41.667 0.00 0.00 0.00 5.73
4943 6133 3.754850 AGTTAAAATAGTGTTCCCCGCAC 59.245 43.478 0.00 0.00 37.13 5.34
4945 6135 0.696501 AAATAGTGTTCCCCGCACCT 59.303 50.000 0.00 0.00 37.56 4.00
4956 6146 1.392589 CCCGCACCTTATTCATGCTT 58.607 50.000 0.00 0.00 37.20 3.91
4978 6169 1.609320 GGAGGAGACACTTGGAGTTGC 60.609 57.143 0.00 0.00 0.00 4.17
4982 6173 1.598130 GACACTTGGAGTTGCGGCT 60.598 57.895 0.00 0.00 0.00 5.52
4983 6174 0.320421 GACACTTGGAGTTGCGGCTA 60.320 55.000 0.00 0.00 0.00 3.93
4993 6184 2.280628 AGTTGCGGCTAATCTACTTGC 58.719 47.619 0.00 0.00 0.00 4.01
5012 6211 1.668751 GCGTTGTTGGTCTTTGACAGA 59.331 47.619 0.07 0.00 33.68 3.41
5018 6217 4.780815 TGTTGGTCTTTGACAGATCTGTT 58.219 39.130 28.46 13.13 45.05 3.16
5019 6218 5.192927 TGTTGGTCTTTGACAGATCTGTTT 58.807 37.500 28.46 7.75 45.05 2.83
5021 6220 6.826231 TGTTGGTCTTTGACAGATCTGTTTAA 59.174 34.615 28.46 22.16 45.05 1.52
5022 6221 7.338196 TGTTGGTCTTTGACAGATCTGTTTAAA 59.662 33.333 28.46 26.40 45.05 1.52
5024 6223 9.567776 TTGGTCTTTGACAGATCTGTTTAAATA 57.432 29.630 28.46 20.09 45.05 1.40
5025 6224 9.739276 TGGTCTTTGACAGATCTGTTTAAATAT 57.261 29.630 28.46 3.74 45.05 1.28
5026 6225 9.994432 GGTCTTTGACAGATCTGTTTAAATATG 57.006 33.333 28.46 18.58 45.05 1.78
5027 6226 9.495754 GTCTTTGACAGATCTGTTTAAATATGC 57.504 33.333 28.46 13.23 45.05 3.14
5028 6227 9.453572 TCTTTGACAGATCTGTTTAAATATGCT 57.546 29.630 28.46 1.61 45.05 3.79
5053 6252 3.236632 TGTCTCTGACGGATTCATGTG 57.763 47.619 0.00 0.00 34.95 3.21
5055 6254 1.134699 TCTCTGACGGATTCATGTGGC 60.135 52.381 0.00 0.00 32.17 5.01
5060 6259 2.083774 GACGGATTCATGTGGCTTTGA 58.916 47.619 0.00 0.00 0.00 2.69
5061 6260 1.812571 ACGGATTCATGTGGCTTTGAC 59.187 47.619 0.00 0.00 0.00 3.18
5095 6294 8.946085 CATGGTTGTTAGTGTGTTTGTAGATAT 58.054 33.333 0.00 0.00 0.00 1.63
5118 6317 6.232581 TGGTTGTTCCAATCAATGTTCTTT 57.767 33.333 0.00 0.00 44.12 2.52
5121 6320 8.260818 TGGTTGTTCCAATCAATGTTCTTTTTA 58.739 29.630 0.00 0.00 44.12 1.52
5125 6324 9.190858 TGTTCCAATCAATGTTCTTTTTAATCG 57.809 29.630 0.00 0.00 0.00 3.34
5127 6326 6.811170 TCCAATCAATGTTCTTTTTAATCGGC 59.189 34.615 0.00 0.00 0.00 5.54
5143 6342 2.572664 GGCGACGTTTGTTGTTTGG 58.427 52.632 0.00 0.00 0.00 3.28
5144 6343 0.179158 GGCGACGTTTGTTGTTTGGT 60.179 50.000 0.00 0.00 0.00 3.67
5145 6344 0.911184 GCGACGTTTGTTGTTTGGTG 59.089 50.000 0.00 0.00 0.00 4.17
5146 6345 0.911184 CGACGTTTGTTGTTTGGTGC 59.089 50.000 0.00 0.00 0.00 5.01
5147 6346 0.911184 GACGTTTGTTGTTTGGTGCG 59.089 50.000 0.00 0.00 0.00 5.34
5148 6347 0.241481 ACGTTTGTTGTTTGGTGCGT 59.759 45.000 0.00 0.00 0.00 5.24
5149 6348 1.336056 ACGTTTGTTGTTTGGTGCGTT 60.336 42.857 0.00 0.00 0.00 4.84
5151 6350 1.391826 GTTTGTTGTTTGGTGCGTTGG 59.608 47.619 0.00 0.00 0.00 3.77
5152 6351 0.603569 TTGTTGTTTGGTGCGTTGGT 59.396 45.000 0.00 0.00 0.00 3.67
5196 6395 9.520204 CATGACTTTTTGACTTTCAACTACAAT 57.480 29.630 0.00 0.00 35.89 2.71
5212 6411 5.978814 ACTACAATAAGATTTGTCGGCTCT 58.021 37.500 0.00 0.00 40.25 4.09
5219 6418 3.077359 AGATTTGTCGGCTCTTTTGAGG 58.923 45.455 0.00 0.00 46.30 3.86
5224 6423 0.836400 TCGGCTCTTTTGAGGAGGGT 60.836 55.000 0.00 0.00 46.30 4.34
5237 6436 1.097547 GGAGGGTGATGACATTGGCG 61.098 60.000 0.00 0.00 0.00 5.69
5254 6453 1.663643 GGCGCACATTCGACTTATTCA 59.336 47.619 10.83 0.00 33.99 2.57
5255 6454 2.287915 GGCGCACATTCGACTTATTCAT 59.712 45.455 10.83 0.00 33.99 2.57
5261 6460 6.086222 GCACATTCGACTTATTCATGTGTTT 58.914 36.000 19.72 0.00 39.79 2.83
5277 6476 7.791029 TCATGTGTTTATAGTCATTGCTAGGA 58.209 34.615 0.00 0.00 0.00 2.94
5280 6479 7.620880 TGTGTTTATAGTCATTGCTAGGAGTT 58.379 34.615 0.00 0.00 0.00 3.01
5283 6482 8.318412 TGTTTATAGTCATTGCTAGGAGTTCAA 58.682 33.333 0.00 0.00 0.00 2.69
5301 6500 5.010012 AGTTCAAGGACCTGCTTGTTATTTG 59.990 40.000 0.00 0.00 32.83 2.32
5303 6502 4.892934 TCAAGGACCTGCTTGTTATTTGTT 59.107 37.500 0.00 0.00 32.83 2.83
5304 6503 4.853924 AGGACCTGCTTGTTATTTGTTG 57.146 40.909 0.00 0.00 0.00 3.33
5305 6504 3.005791 AGGACCTGCTTGTTATTTGTTGC 59.994 43.478 0.00 0.00 0.00 4.17
5306 6505 3.005791 GGACCTGCTTGTTATTTGTTGCT 59.994 43.478 0.00 0.00 0.00 3.91
5307 6506 4.501400 GGACCTGCTTGTTATTTGTTGCTT 60.501 41.667 0.00 0.00 0.00 3.91
5308 6507 5.278758 GGACCTGCTTGTTATTTGTTGCTTA 60.279 40.000 0.00 0.00 0.00 3.09
5311 6510 7.891561 ACCTGCTTGTTATTTGTTGCTTATAA 58.108 30.769 0.00 0.00 0.00 0.98
5312 6511 8.028938 ACCTGCTTGTTATTTGTTGCTTATAAG 58.971 33.333 8.20 8.20 0.00 1.73
5315 6514 7.039363 TGCTTGTTATTTGTTGCTTATAAGGGT 60.039 33.333 14.28 0.00 0.00 4.34
5316 6515 7.488150 GCTTGTTATTTGTTGCTTATAAGGGTC 59.512 37.037 14.28 0.00 0.00 4.46
5317 6516 8.644374 TTGTTATTTGTTGCTTATAAGGGTCT 57.356 30.769 14.28 0.00 0.00 3.85
5318 6517 8.644374 TGTTATTTGTTGCTTATAAGGGTCTT 57.356 30.769 14.28 0.00 0.00 3.01
5319 6518 9.084533 TGTTATTTGTTGCTTATAAGGGTCTTT 57.915 29.630 14.28 0.00 0.00 2.52
5320 6519 9.569167 GTTATTTGTTGCTTATAAGGGTCTTTC 57.431 33.333 14.28 0.00 0.00 2.62
5321 6520 9.528489 TTATTTGTTGCTTATAAGGGTCTTTCT 57.472 29.630 14.28 0.00 0.00 2.52
5322 6521 7.833285 TTTGTTGCTTATAAGGGTCTTTCTT 57.167 32.000 14.28 0.00 0.00 2.52
5323 6522 7.833285 TTGTTGCTTATAAGGGTCTTTCTTT 57.167 32.000 14.28 0.00 0.00 2.52
5324 6523 7.833285 TGTTGCTTATAAGGGTCTTTCTTTT 57.167 32.000 14.28 0.00 0.00 2.27
5325 6524 7.657336 TGTTGCTTATAAGGGTCTTTCTTTTG 58.343 34.615 14.28 0.00 0.00 2.44
5326 6525 7.286775 TGTTGCTTATAAGGGTCTTTCTTTTGT 59.713 33.333 14.28 0.00 0.00 2.83
5327 6526 7.833285 TGCTTATAAGGGTCTTTCTTTTGTT 57.167 32.000 14.28 0.00 0.00 2.83
5328 6527 8.927675 TGCTTATAAGGGTCTTTCTTTTGTTA 57.072 30.769 14.28 0.00 0.00 2.41
5329 6528 8.789762 TGCTTATAAGGGTCTTTCTTTTGTTAC 58.210 33.333 14.28 0.00 0.00 2.50
5330 6529 9.011095 GCTTATAAGGGTCTTTCTTTTGTTACT 57.989 33.333 14.28 0.00 0.00 2.24
5437 6636 4.553323 ACATGCTGAAAAGATTCACAAGC 58.447 39.130 0.00 0.00 40.59 4.01
5441 6640 5.065914 TGCTGAAAAGATTCACAAGCTACT 58.934 37.500 0.00 0.00 40.59 2.57
5450 6649 6.857956 AGATTCACAAGCTACTACACTACAG 58.142 40.000 0.00 0.00 0.00 2.74
5456 6655 6.924060 CACAAGCTACTACACTACAGAAAGTT 59.076 38.462 0.00 0.00 0.00 2.66
5458 6657 7.438459 ACAAGCTACTACACTACAGAAAGTTTG 59.562 37.037 0.00 0.00 32.61 2.93
5479 6678 4.513442 TGGATTAATTTCTCGTGGGACAG 58.487 43.478 0.00 0.00 41.80 3.51
5491 6690 2.125106 GGACAGATGTGGGGCGAC 60.125 66.667 0.00 0.00 0.00 5.19
5497 6697 2.032528 ATGTGGGGCGACTGTGTG 59.967 61.111 0.00 0.00 0.00 3.82
5501 6701 1.835267 TGGGGCGACTGTGTGTAGT 60.835 57.895 0.00 0.00 0.00 2.73
5502 6702 1.080025 GGGGCGACTGTGTGTAGTC 60.080 63.158 0.00 0.00 42.83 2.59
5526 6726 0.608035 GGACGGAAATGGTTGGAGCA 60.608 55.000 0.00 0.00 0.00 4.26
5537 6737 1.228644 TTGGAGCAACATGGCAGCT 60.229 52.632 8.30 8.30 42.17 4.24
5538 6738 1.529152 TTGGAGCAACATGGCAGCTG 61.529 55.000 10.11 10.11 39.02 4.24
5557 6757 4.695928 AGCTGCTGCATGTTATCAGATATG 59.304 41.667 18.42 0.00 42.74 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.284785 CCCTGGGAGTAATTTCTGGCA 59.715 52.381 7.01 0.00 0.00 4.92
11 12 0.339859 TAGCTGATGTCCCTGGGAGT 59.660 55.000 17.73 8.10 29.39 3.85
17 18 7.178274 CACTAATCTTATCTAGCTGATGTCCCT 59.822 40.741 0.00 0.00 36.65 4.20
132 134 8.448615 GTCCGCGCATGTATATATGTATATAGA 58.551 37.037 8.75 1.00 33.19 1.98
133 135 8.234546 TGTCCGCGCATGTATATATGTATATAG 58.765 37.037 8.75 0.00 33.19 1.31
134 136 8.101654 TGTCCGCGCATGTATATATGTATATA 57.898 34.615 8.75 0.00 31.69 0.86
135 137 6.977213 TGTCCGCGCATGTATATATGTATAT 58.023 36.000 8.75 0.00 33.68 0.86
163 165 9.852091 CGGAGGTAGTATAAAATTGGAGTATAC 57.148 37.037 0.00 0.00 32.96 1.47
165 167 8.488308 ACGGAGGTAGTATAAAATTGGAGTAT 57.512 34.615 0.00 0.00 0.00 2.12
167 169 6.183360 GGACGGAGGTAGTATAAAATTGGAGT 60.183 42.308 0.00 0.00 0.00 3.85
168 170 6.041751 AGGACGGAGGTAGTATAAAATTGGAG 59.958 42.308 0.00 0.00 0.00 3.86
169 171 5.901276 AGGACGGAGGTAGTATAAAATTGGA 59.099 40.000 0.00 0.00 0.00 3.53
170 172 5.989777 CAGGACGGAGGTAGTATAAAATTGG 59.010 44.000 0.00 0.00 0.00 3.16
171 173 5.989777 CCAGGACGGAGGTAGTATAAAATTG 59.010 44.000 0.00 0.00 36.56 2.32
172 174 5.664457 ACCAGGACGGAGGTAGTATAAAATT 59.336 40.000 0.00 0.00 36.07 1.82
173 175 5.214293 ACCAGGACGGAGGTAGTATAAAAT 58.786 41.667 0.00 0.00 36.07 1.82
174 176 4.613437 ACCAGGACGGAGGTAGTATAAAA 58.387 43.478 0.00 0.00 36.07 1.52
175 177 4.255510 ACCAGGACGGAGGTAGTATAAA 57.744 45.455 0.00 0.00 36.07 1.40
176 178 3.959495 ACCAGGACGGAGGTAGTATAA 57.041 47.619 0.00 0.00 36.07 0.98
177 179 3.959495 AACCAGGACGGAGGTAGTATA 57.041 47.619 0.00 0.00 37.07 1.47
178 180 2.842645 AACCAGGACGGAGGTAGTAT 57.157 50.000 0.00 0.00 37.07 2.12
179 181 2.610438 AAACCAGGACGGAGGTAGTA 57.390 50.000 0.00 0.00 37.07 1.82
180 182 2.610438 TAAACCAGGACGGAGGTAGT 57.390 50.000 0.00 0.00 37.07 2.73
181 183 4.467769 TCTATAAACCAGGACGGAGGTAG 58.532 47.826 0.00 0.00 37.07 3.18
182 184 4.524802 TCTATAAACCAGGACGGAGGTA 57.475 45.455 0.00 0.00 37.07 3.08
183 185 3.393426 TCTATAAACCAGGACGGAGGT 57.607 47.619 0.00 0.00 40.61 3.85
184 186 3.258622 GGATCTATAAACCAGGACGGAGG 59.741 52.174 0.00 0.00 38.63 4.30
185 187 3.258622 GGGATCTATAAACCAGGACGGAG 59.741 52.174 0.00 0.00 38.63 4.63
186 188 3.236896 GGGATCTATAAACCAGGACGGA 58.763 50.000 0.00 0.00 38.63 4.69
187 189 2.302157 GGGGATCTATAAACCAGGACGG 59.698 54.545 0.00 0.00 42.50 4.79
188 190 3.240302 AGGGGATCTATAAACCAGGACG 58.760 50.000 0.00 0.00 0.00 4.79
189 191 5.104067 ACAAAGGGGATCTATAAACCAGGAC 60.104 44.000 0.00 0.00 0.00 3.85
190 192 5.043762 ACAAAGGGGATCTATAAACCAGGA 58.956 41.667 0.00 0.00 0.00 3.86
191 193 5.388599 ACAAAGGGGATCTATAAACCAGG 57.611 43.478 0.00 0.00 0.00 4.45
192 194 7.138054 ACTACAAAGGGGATCTATAAACCAG 57.862 40.000 0.00 0.00 0.00 4.00
193 195 7.519347 AACTACAAAGGGGATCTATAAACCA 57.481 36.000 0.00 0.00 0.00 3.67
194 196 7.832685 ACAAACTACAAAGGGGATCTATAAACC 59.167 37.037 0.00 0.00 0.00 3.27
195 197 8.674607 CACAAACTACAAAGGGGATCTATAAAC 58.325 37.037 0.00 0.00 0.00 2.01
196 198 7.338449 GCACAAACTACAAAGGGGATCTATAAA 59.662 37.037 0.00 0.00 0.00 1.40
197 199 6.826741 GCACAAACTACAAAGGGGATCTATAA 59.173 38.462 0.00 0.00 0.00 0.98
198 200 6.157994 AGCACAAACTACAAAGGGGATCTATA 59.842 38.462 0.00 0.00 0.00 1.31
199 201 5.044846 AGCACAAACTACAAAGGGGATCTAT 60.045 40.000 0.00 0.00 0.00 1.98
200 202 4.288626 AGCACAAACTACAAAGGGGATCTA 59.711 41.667 0.00 0.00 0.00 1.98
201 203 3.074538 AGCACAAACTACAAAGGGGATCT 59.925 43.478 0.00 0.00 0.00 2.75
202 204 3.421844 AGCACAAACTACAAAGGGGATC 58.578 45.455 0.00 0.00 0.00 3.36
203 205 3.525800 AGCACAAACTACAAAGGGGAT 57.474 42.857 0.00 0.00 0.00 3.85
204 206 4.440826 TTAGCACAAACTACAAAGGGGA 57.559 40.909 0.00 0.00 0.00 4.81
205 207 5.722021 ATTTAGCACAAACTACAAAGGGG 57.278 39.130 0.00 0.00 0.00 4.79
206 208 7.708752 TCAAAATTTAGCACAAACTACAAAGGG 59.291 33.333 0.00 0.00 0.00 3.95
207 209 8.539674 GTCAAAATTTAGCACAAACTACAAAGG 58.460 33.333 0.00 0.00 0.00 3.11
208 210 9.301153 AGTCAAAATTTAGCACAAACTACAAAG 57.699 29.630 0.00 0.00 0.00 2.77
240 242 9.988815 ACATGCATTAACATTTTGTTAGGTAAA 57.011 25.926 0.00 0.00 42.93 2.01
241 243 9.632807 GACATGCATTAACATTTTGTTAGGTAA 57.367 29.630 0.00 0.00 42.93 2.85
242 244 8.797438 TGACATGCATTAACATTTTGTTAGGTA 58.203 29.630 0.00 0.00 42.93 3.08
243 245 7.665690 TGACATGCATTAACATTTTGTTAGGT 58.334 30.769 0.00 0.00 42.93 3.08
244 246 8.531622 TTGACATGCATTAACATTTTGTTAGG 57.468 30.769 0.00 0.29 42.93 2.69
245 247 9.409312 TCTTGACATGCATTAACATTTTGTTAG 57.591 29.630 0.00 0.00 42.93 2.34
246 248 9.409312 CTCTTGACATGCATTAACATTTTGTTA 57.591 29.630 0.00 0.00 41.45 2.41
247 249 8.143193 TCTCTTGACATGCATTAACATTTTGTT 58.857 29.630 0.00 0.00 43.88 2.83
248 250 7.660112 TCTCTTGACATGCATTAACATTTTGT 58.340 30.769 0.00 0.00 0.00 2.83
249 251 8.523523 TTCTCTTGACATGCATTAACATTTTG 57.476 30.769 0.00 0.00 0.00 2.44
250 252 9.715121 ATTTCTCTTGACATGCATTAACATTTT 57.285 25.926 0.00 0.00 0.00 1.82
251 253 9.715121 AATTTCTCTTGACATGCATTAACATTT 57.285 25.926 0.00 0.00 0.00 2.32
276 278 9.389755 TGTTCAAATACGAATCCAATGAGATAA 57.610 29.630 0.00 0.00 0.00 1.75
277 279 8.956533 TGTTCAAATACGAATCCAATGAGATA 57.043 30.769 0.00 0.00 0.00 1.98
278 280 7.864108 TGTTCAAATACGAATCCAATGAGAT 57.136 32.000 0.00 0.00 0.00 2.75
279 281 7.864108 ATGTTCAAATACGAATCCAATGAGA 57.136 32.000 0.00 0.00 0.00 3.27
280 282 8.830580 ACTATGTTCAAATACGAATCCAATGAG 58.169 33.333 0.00 0.00 0.00 2.90
281 283 8.731275 ACTATGTTCAAATACGAATCCAATGA 57.269 30.769 0.00 0.00 0.00 2.57
282 284 9.787532 AAACTATGTTCAAATACGAATCCAATG 57.212 29.630 0.00 0.00 0.00 2.82
284 286 9.834628 GAAAACTATGTTCAAATACGAATCCAA 57.165 29.630 0.00 0.00 0.00 3.53
285 287 9.004717 TGAAAACTATGTTCAAATACGAATCCA 57.995 29.630 0.00 0.00 32.13 3.41
286 288 9.834628 TTGAAAACTATGTTCAAATACGAATCC 57.165 29.630 0.00 0.00 40.96 3.01
309 311 9.149225 GCATGTCACCAAACATTATATTTTTGA 57.851 29.630 0.00 0.00 37.78 2.69
310 312 8.109391 CGCATGTCACCAAACATTATATTTTTG 58.891 33.333 0.00 0.00 37.78 2.44
311 313 7.816995 ACGCATGTCACCAAACATTATATTTTT 59.183 29.630 0.00 0.00 37.78 1.94
312 314 7.275341 CACGCATGTCACCAAACATTATATTTT 59.725 33.333 0.00 0.00 37.78 1.82
313 315 6.751425 CACGCATGTCACCAAACATTATATTT 59.249 34.615 0.00 0.00 37.78 1.40
314 316 6.094742 TCACGCATGTCACCAAACATTATATT 59.905 34.615 0.00 0.00 37.78 1.28
315 317 5.588246 TCACGCATGTCACCAAACATTATAT 59.412 36.000 0.00 0.00 37.78 0.86
316 318 4.938226 TCACGCATGTCACCAAACATTATA 59.062 37.500 0.00 0.00 37.78 0.98
317 319 3.755905 TCACGCATGTCACCAAACATTAT 59.244 39.130 0.00 0.00 37.78 1.28
318 320 3.142174 TCACGCATGTCACCAAACATTA 58.858 40.909 0.00 0.00 37.78 1.90
319 321 1.952990 TCACGCATGTCACCAAACATT 59.047 42.857 0.00 0.00 37.78 2.71
320 322 1.603456 TCACGCATGTCACCAAACAT 58.397 45.000 0.00 0.00 40.49 2.71
321 323 1.064803 GTTCACGCATGTCACCAAACA 59.935 47.619 0.00 0.00 0.00 2.83
322 324 1.064803 TGTTCACGCATGTCACCAAAC 59.935 47.619 0.00 0.00 0.00 2.93
323 325 1.383523 TGTTCACGCATGTCACCAAA 58.616 45.000 0.00 0.00 0.00 3.28
324 326 1.603456 ATGTTCACGCATGTCACCAA 58.397 45.000 0.00 0.00 0.00 3.67
325 327 1.603456 AATGTTCACGCATGTCACCA 58.397 45.000 0.00 0.00 0.00 4.17
326 328 2.704725 AAATGTTCACGCATGTCACC 57.295 45.000 0.00 0.00 0.00 4.02
327 329 3.371168 ACAAAATGTTCACGCATGTCAC 58.629 40.909 0.00 0.00 0.00 3.67
328 330 3.706802 ACAAAATGTTCACGCATGTCA 57.293 38.095 0.00 0.00 0.00 3.58
329 331 5.212194 ACTAACAAAATGTTCACGCATGTC 58.788 37.500 0.00 0.00 40.22 3.06
330 332 5.181690 ACTAACAAAATGTTCACGCATGT 57.818 34.783 0.00 0.00 40.22 3.21
331 333 6.509317 AAACTAACAAAATGTTCACGCATG 57.491 33.333 0.00 0.00 40.22 4.06
332 334 8.810652 ATTAAACTAACAAAATGTTCACGCAT 57.189 26.923 0.00 0.00 40.22 4.73
333 335 8.132362 AGATTAAACTAACAAAATGTTCACGCA 58.868 29.630 0.00 0.00 40.22 5.24
334 336 8.502161 AGATTAAACTAACAAAATGTTCACGC 57.498 30.769 0.00 0.00 40.22 5.34
350 352 8.592809 TGCCAAATTTTGACCATAGATTAAACT 58.407 29.630 10.72 0.00 0.00 2.66
351 353 8.655970 GTGCCAAATTTTGACCATAGATTAAAC 58.344 33.333 10.72 0.00 0.00 2.01
352 354 7.543868 CGTGCCAAATTTTGACCATAGATTAAA 59.456 33.333 10.72 0.00 0.00 1.52
353 355 7.032580 CGTGCCAAATTTTGACCATAGATTAA 58.967 34.615 10.72 0.00 0.00 1.40
354 356 6.375736 TCGTGCCAAATTTTGACCATAGATTA 59.624 34.615 10.72 0.00 0.00 1.75
355 357 5.184864 TCGTGCCAAATTTTGACCATAGATT 59.815 36.000 10.72 0.00 0.00 2.40
356 358 4.704540 TCGTGCCAAATTTTGACCATAGAT 59.295 37.500 10.72 0.00 0.00 1.98
357 359 4.075682 TCGTGCCAAATTTTGACCATAGA 58.924 39.130 10.72 8.13 0.00 1.98
358 360 4.433186 TCGTGCCAAATTTTGACCATAG 57.567 40.909 10.72 6.37 0.00 2.23
359 361 4.855715 TTCGTGCCAAATTTTGACCATA 57.144 36.364 10.72 0.00 0.00 2.74
360 362 3.742433 TTCGTGCCAAATTTTGACCAT 57.258 38.095 10.72 0.00 0.00 3.55
361 363 3.526931 TTTCGTGCCAAATTTTGACCA 57.473 38.095 10.72 4.80 0.00 4.02
362 364 4.985409 TGTATTTCGTGCCAAATTTTGACC 59.015 37.500 10.72 2.35 0.00 4.02
363 365 6.517914 TTGTATTTCGTGCCAAATTTTGAC 57.482 33.333 10.72 0.00 0.00 3.18
364 366 6.146837 CCATTGTATTTCGTGCCAAATTTTGA 59.853 34.615 10.72 0.00 0.00 2.69
365 367 6.305639 CCATTGTATTTCGTGCCAAATTTTG 58.694 36.000 1.99 1.99 0.00 2.44
366 368 5.411053 CCCATTGTATTTCGTGCCAAATTTT 59.589 36.000 0.00 0.00 0.00 1.82
367 369 4.934602 CCCATTGTATTTCGTGCCAAATTT 59.065 37.500 0.00 0.00 0.00 1.82
368 370 4.502962 CCCATTGTATTTCGTGCCAAATT 58.497 39.130 0.00 0.00 0.00 1.82
369 371 3.118811 CCCCATTGTATTTCGTGCCAAAT 60.119 43.478 0.00 0.00 0.00 2.32
370 372 2.232452 CCCCATTGTATTTCGTGCCAAA 59.768 45.455 0.00 0.00 0.00 3.28
371 373 1.821753 CCCCATTGTATTTCGTGCCAA 59.178 47.619 0.00 0.00 0.00 4.52
372 374 1.004862 TCCCCATTGTATTTCGTGCCA 59.995 47.619 0.00 0.00 0.00 4.92
373 375 1.404035 GTCCCCATTGTATTTCGTGCC 59.596 52.381 0.00 0.00 0.00 5.01
374 376 1.404035 GGTCCCCATTGTATTTCGTGC 59.596 52.381 0.00 0.00 0.00 5.34
375 377 2.717390 TGGTCCCCATTGTATTTCGTG 58.283 47.619 0.00 0.00 0.00 4.35
376 378 3.443145 TTGGTCCCCATTGTATTTCGT 57.557 42.857 0.00 0.00 31.53 3.85
377 379 6.270064 GTTTATTGGTCCCCATTGTATTTCG 58.730 40.000 0.00 0.00 31.53 3.46
378 380 6.407639 GGGTTTATTGGTCCCCATTGTATTTC 60.408 42.308 0.00 0.00 37.09 2.17
379 381 5.427157 GGGTTTATTGGTCCCCATTGTATTT 59.573 40.000 0.00 0.00 37.09 1.40
380 382 4.966168 GGGTTTATTGGTCCCCATTGTATT 59.034 41.667 0.00 0.00 37.09 1.89
381 383 4.552674 GGGTTTATTGGTCCCCATTGTAT 58.447 43.478 0.00 0.00 37.09 2.29
382 384 3.625211 CGGGTTTATTGGTCCCCATTGTA 60.625 47.826 0.00 0.00 38.09 2.41
383 385 2.827755 GGGTTTATTGGTCCCCATTGT 58.172 47.619 0.00 0.00 37.09 2.71
384 386 1.754226 CGGGTTTATTGGTCCCCATTG 59.246 52.381 0.00 0.00 38.09 2.82
385 387 1.342574 CCGGGTTTATTGGTCCCCATT 60.343 52.381 0.00 0.00 38.09 3.16
386 388 0.260523 CCGGGTTTATTGGTCCCCAT 59.739 55.000 0.00 0.00 38.09 4.00
387 389 0.845543 TCCGGGTTTATTGGTCCCCA 60.846 55.000 0.00 0.00 38.09 4.96
388 390 0.394762 GTCCGGGTTTATTGGTCCCC 60.395 60.000 0.00 0.00 38.09 4.81
389 391 0.745486 CGTCCGGGTTTATTGGTCCC 60.745 60.000 0.00 0.00 37.98 4.46
390 392 0.745486 CCGTCCGGGTTTATTGGTCC 60.745 60.000 0.00 0.00 0.00 4.46
391 393 0.249955 TCCGTCCGGGTTTATTGGTC 59.750 55.000 0.00 0.00 37.00 4.02
392 394 0.251073 CTCCGTCCGGGTTTATTGGT 59.749 55.000 0.00 0.00 37.00 3.67
393 395 0.463116 CCTCCGTCCGGGTTTATTGG 60.463 60.000 0.00 0.00 37.00 3.16
394 396 0.251073 ACCTCCGTCCGGGTTTATTG 59.749 55.000 0.00 0.00 37.00 1.90
395 397 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
396 398 1.342374 ACTACCTCCGTCCGGGTTTAT 60.342 52.381 0.00 0.00 37.07 1.40
397 399 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
398 400 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
399 401 0.259938 ATACTACCTCCGTCCGGGTT 59.740 55.000 0.00 0.00 37.07 4.11
400 402 0.259938 AATACTACCTCCGTCCGGGT 59.740 55.000 0.00 0.00 39.40 5.28
401 403 2.276732 TAATACTACCTCCGTCCGGG 57.723 55.000 0.00 0.00 35.59 5.73
402 404 3.217626 AGTTAATACTACCTCCGTCCGG 58.782 50.000 0.00 0.00 31.21 5.14
403 405 4.907879 AAGTTAATACTACCTCCGTCCG 57.092 45.455 0.00 0.00 33.17 4.79
404 406 9.684448 GTATTAAAGTTAATACTACCTCCGTCC 57.316 37.037 19.76 0.00 46.01 4.79
429 431 9.561069 AGTGTCTCAATCTTAATACAACTTTGT 57.439 29.630 0.00 0.00 44.86 2.83
442 444 8.936864 CCGTCTTAAAATAAGTGTCTCAATCTT 58.063 33.333 0.00 0.00 0.00 2.40
443 445 8.311836 TCCGTCTTAAAATAAGTGTCTCAATCT 58.688 33.333 0.00 0.00 0.00 2.40
444 446 8.475331 TCCGTCTTAAAATAAGTGTCTCAATC 57.525 34.615 0.00 0.00 0.00 2.67
445 447 7.549488 CCTCCGTCTTAAAATAAGTGTCTCAAT 59.451 37.037 0.00 0.00 0.00 2.57
446 448 6.872020 CCTCCGTCTTAAAATAAGTGTCTCAA 59.128 38.462 0.00 0.00 0.00 3.02
447 449 6.014840 ACCTCCGTCTTAAAATAAGTGTCTCA 60.015 38.462 0.00 0.00 0.00 3.27
448 450 6.396450 ACCTCCGTCTTAAAATAAGTGTCTC 58.604 40.000 0.00 0.00 0.00 3.36
449 451 6.356186 ACCTCCGTCTTAAAATAAGTGTCT 57.644 37.500 0.00 0.00 0.00 3.41
450 452 8.713737 ATTACCTCCGTCTTAAAATAAGTGTC 57.286 34.615 0.00 0.00 0.00 3.67
451 453 9.591792 GTATTACCTCCGTCTTAAAATAAGTGT 57.408 33.333 0.00 0.00 0.00 3.55
452 454 9.813446 AGTATTACCTCCGTCTTAAAATAAGTG 57.187 33.333 0.00 0.00 0.00 3.16
456 458 9.950680 CGTTAGTATTACCTCCGTCTTAAAATA 57.049 33.333 0.00 0.00 0.00 1.40
457 459 8.686334 TCGTTAGTATTACCTCCGTCTTAAAAT 58.314 33.333 0.00 0.00 0.00 1.82
458 460 8.050778 TCGTTAGTATTACCTCCGTCTTAAAA 57.949 34.615 0.00 0.00 0.00 1.52
459 461 7.624360 TCGTTAGTATTACCTCCGTCTTAAA 57.376 36.000 0.00 0.00 0.00 1.52
460 462 7.624360 TTCGTTAGTATTACCTCCGTCTTAA 57.376 36.000 0.00 0.00 0.00 1.85
461 463 7.807977 ATTCGTTAGTATTACCTCCGTCTTA 57.192 36.000 0.00 0.00 0.00 2.10
462 464 6.705863 ATTCGTTAGTATTACCTCCGTCTT 57.294 37.500 0.00 0.00 0.00 3.01
463 465 6.705863 AATTCGTTAGTATTACCTCCGTCT 57.294 37.500 0.00 0.00 0.00 4.18
464 466 7.761651 AAAATTCGTTAGTATTACCTCCGTC 57.238 36.000 0.00 0.00 0.00 4.79
619 628 5.737635 GCGTGCTATAACTCTCTTTGATCCT 60.738 44.000 0.00 0.00 0.00 3.24
802 817 2.851263 ATTGTTTCGTGTGGCTAGGA 57.149 45.000 0.00 0.00 0.00 2.94
860 875 5.960105 GCTGCAAAGATTAAAAGTAGCTACG 59.040 40.000 17.99 0.77 35.48 3.51
908 923 0.457443 GCTAGGGCATGAAAGCAACC 59.543 55.000 0.00 0.00 38.54 3.77
1029 1044 4.761975 CTTGAGGCGGGTAGTGTTAATAA 58.238 43.478 0.00 0.00 0.00 1.40
1030 1045 3.431207 GCTTGAGGCGGGTAGTGTTAATA 60.431 47.826 0.00 0.00 0.00 0.98
1031 1046 2.679930 GCTTGAGGCGGGTAGTGTTAAT 60.680 50.000 0.00 0.00 0.00 1.40
1057 1072 2.031245 CAGCTACTCATCGGAGCTAGTG 60.031 54.545 0.00 0.00 44.69 2.74
1508 1523 1.374947 CGGGAGGAGGTGCAAGAAA 59.625 57.895 0.00 0.00 0.00 2.52
1946 1961 1.064463 TGATCCACTGGCCATCTTTCC 60.064 52.381 5.51 0.00 0.00 3.13
1950 1965 1.918253 GGTGATCCACTGGCCATCT 59.082 57.895 5.51 0.00 34.40 2.90
2073 2088 1.074319 CGCCTGTACGTATGTGCGTT 61.074 55.000 20.39 0.00 43.04 4.84
2078 2093 0.179145 GCTGTCGCCTGTACGTATGT 60.179 55.000 0.00 0.00 0.00 2.29
2098 2113 5.188948 ACGGGTGCATATACCATATGTGTAT 59.811 40.000 16.27 16.27 42.69 2.29
2114 2129 1.262417 TCTATCAACTCACGGGTGCA 58.738 50.000 0.00 0.00 31.53 4.57
2359 2411 2.266689 CCCCCACTACCGGTTTCG 59.733 66.667 15.04 4.30 0.00 3.46
2360 2412 1.297689 GACCCCCACTACCGGTTTC 59.702 63.158 15.04 0.00 0.00 2.78
2394 2447 3.065786 TCAACTGATACGTGTCGATACCC 59.934 47.826 6.73 0.00 0.00 3.69
2398 2451 4.436242 AGTTCAACTGATACGTGTCGAT 57.564 40.909 7.84 0.00 0.00 3.59
2431 2484 4.090761 TGGAGAAGCAGTTCTTGACAAT 57.909 40.909 0.00 0.00 43.50 2.71
2435 2488 3.845781 AGTTGGAGAAGCAGTTCTTGA 57.154 42.857 0.00 0.00 43.50 3.02
2472 2528 2.618709 GCCGGGAAACAATCAATAGGAG 59.381 50.000 2.18 0.00 0.00 3.69
2492 2548 2.863740 TCACGTGGATTCGTCATTATGC 59.136 45.455 17.00 0.00 42.27 3.14
2553 2609 9.625747 AAAAGAAGAAGAAGAAGAAGAGAACAT 57.374 29.630 0.00 0.00 0.00 2.71
2578 2634 4.785511 TGAGAAAACAAACGGGTTCAAA 57.214 36.364 0.00 0.00 0.00 2.69
2581 2637 5.183014 AGAATGAGAAAACAAACGGGTTC 57.817 39.130 0.00 0.00 0.00 3.62
2582 2638 5.359860 AGAAGAATGAGAAAACAAACGGGTT 59.640 36.000 0.00 0.00 0.00 4.11
2583 2639 4.887655 AGAAGAATGAGAAAACAAACGGGT 59.112 37.500 0.00 0.00 0.00 5.28
2585 2641 5.215160 CCAGAAGAATGAGAAAACAAACGG 58.785 41.667 0.00 0.00 0.00 4.44
2586 2642 5.682862 CACCAGAAGAATGAGAAAACAAACG 59.317 40.000 0.00 0.00 0.00 3.60
2587 2643 6.564328 ACACCAGAAGAATGAGAAAACAAAC 58.436 36.000 0.00 0.00 0.00 2.93
2588 2644 6.603201 AGACACCAGAAGAATGAGAAAACAAA 59.397 34.615 0.00 0.00 0.00 2.83
2589 2645 6.122277 AGACACCAGAAGAATGAGAAAACAA 58.878 36.000 0.00 0.00 0.00 2.83
2590 2646 5.684704 AGACACCAGAAGAATGAGAAAACA 58.315 37.500 0.00 0.00 0.00 2.83
2591 2647 7.913674 ATAGACACCAGAAGAATGAGAAAAC 57.086 36.000 0.00 0.00 0.00 2.43
2594 2650 9.823647 GAATTATAGACACCAGAAGAATGAGAA 57.176 33.333 0.00 0.00 0.00 2.87
2595 2651 8.424918 GGAATTATAGACACCAGAAGAATGAGA 58.575 37.037 0.00 0.00 0.00 3.27
2596 2652 7.383572 CGGAATTATAGACACCAGAAGAATGAG 59.616 40.741 0.00 0.00 0.00 2.90
2597 2653 7.210174 CGGAATTATAGACACCAGAAGAATGA 58.790 38.462 0.00 0.00 0.00 2.57
2598 2654 6.425114 CCGGAATTATAGACACCAGAAGAATG 59.575 42.308 0.00 0.00 0.00 2.67
2599 2655 6.099845 ACCGGAATTATAGACACCAGAAGAAT 59.900 38.462 9.46 0.00 0.00 2.40
2622 2678 9.301153 GTTTGGATGTGATGTATGAAAAATACC 57.699 33.333 0.00 0.00 0.00 2.73
2638 2694 1.678627 TGAAACCGTGGTTTGGATGTG 59.321 47.619 21.05 0.00 46.80 3.21
2671 2727 5.109662 AGACTTGATATGTCACGTATCCG 57.890 43.478 13.53 7.89 37.01 4.18
2708 2764 6.753744 GGAACAGATGAATTCAAAACATAGGC 59.246 38.462 13.09 0.00 0.00 3.93
2983 3141 3.427368 CGTTCTCATCTCACCTCACTCTG 60.427 52.174 0.00 0.00 0.00 3.35
3302 3461 9.508642 TGTATGTGTGTGTTTTTATAGGAATGA 57.491 29.630 0.00 0.00 0.00 2.57
3305 3464 8.911918 AGTGTATGTGTGTGTTTTTATAGGAA 57.088 30.769 0.00 0.00 0.00 3.36
3306 3465 8.911918 AAGTGTATGTGTGTGTTTTTATAGGA 57.088 30.769 0.00 0.00 0.00 2.94
3312 3471 7.136119 CGGATAAAGTGTATGTGTGTGTTTTT 58.864 34.615 0.00 0.00 0.00 1.94
3313 3472 6.261381 ACGGATAAAGTGTATGTGTGTGTTTT 59.739 34.615 0.00 0.00 0.00 2.43
3315 3474 5.302360 ACGGATAAAGTGTATGTGTGTGTT 58.698 37.500 0.00 0.00 0.00 3.32
3316 3475 4.890088 ACGGATAAAGTGTATGTGTGTGT 58.110 39.130 0.00 0.00 0.00 3.72
3318 3477 6.869695 TCATACGGATAAAGTGTATGTGTGT 58.130 36.000 10.37 0.00 43.63 3.72
3319 3478 6.074302 GCTCATACGGATAAAGTGTATGTGTG 60.074 42.308 10.37 5.22 43.63 3.82
3362 3533 6.809869 TGTGATGACTTCGTCAATCTCATAT 58.190 36.000 2.65 0.00 45.96 1.78
3363 3534 6.095440 TCTGTGATGACTTCGTCAATCTCATA 59.905 38.462 2.65 0.00 45.96 2.15
3418 3649 5.625721 CGTGTAGCAAATCGAGTATCTTAGG 59.374 44.000 0.00 0.00 0.00 2.69
3424 3655 5.828747 ACATACGTGTAGCAAATCGAGTAT 58.171 37.500 0.00 0.00 36.63 2.12
3431 3662 5.472137 ACCAAAAGACATACGTGTAGCAAAT 59.528 36.000 0.00 0.00 39.09 2.32
3464 3697 3.254903 AGCACATACGTCTACAACAGTCA 59.745 43.478 0.00 0.00 0.00 3.41
3465 3698 3.834610 AGCACATACGTCTACAACAGTC 58.165 45.455 0.00 0.00 0.00 3.51
3481 4372 2.340210 TGCTCACAAAGGTTAGCACA 57.660 45.000 0.00 0.00 46.37 4.57
3598 4490 4.024048 GTGTGACAGAAATCATTCCACGTT 60.024 41.667 0.00 0.00 36.12 3.99
3695 4587 2.010497 GCAAGGTCCAAAGCTAGCTAC 58.990 52.381 19.70 12.36 31.54 3.58
3725 4617 1.974236 AGTTGAGACCTTGCTAGTGCT 59.026 47.619 0.00 0.00 40.48 4.40
3732 4624 0.250467 TGCCTGAGTTGAGACCTTGC 60.250 55.000 0.00 0.00 0.00 4.01
3750 4642 6.986817 AGAGAAATATGTCATTTCCTACGGTG 59.013 38.462 6.19 0.00 38.44 4.94
3880 4773 3.319972 ACGCAAACTAGTTAGACCACTGA 59.680 43.478 8.92 0.00 0.00 3.41
3961 4863 3.434319 GGCACTGTGGCACCATCG 61.434 66.667 27.01 3.53 43.14 3.84
3988 4890 2.615912 GTGCAGAATAGACTTGATGGGC 59.384 50.000 0.00 0.00 0.00 5.36
4005 4907 0.324943 GTTAAGGGAGCTCAGGTGCA 59.675 55.000 17.19 0.00 34.99 4.57
4021 4923 2.300723 AGGCTATTGGTGTCACACGTTA 59.699 45.455 0.73 0.00 34.83 3.18
4088 4990 6.254589 CCAAAATAAGACGTTTTTGCAGTTGA 59.745 34.615 14.77 0.00 40.06 3.18
4089 4991 6.035542 ACCAAAATAAGACGTTTTTGCAGTTG 59.964 34.615 14.77 6.35 40.06 3.16
4421 5324 4.057428 GTCAGGAGGCGACGCTGT 62.057 66.667 20.77 7.42 0.00 4.40
4466 5369 3.787001 AAGGGAGTAGCAGGCCGC 61.787 66.667 11.02 11.02 42.91 6.53
4473 5376 0.391793 GCACAGGACAAGGGAGTAGC 60.392 60.000 0.00 0.00 0.00 3.58
4500 5403 1.016627 CCACGCATACAATGGAGTGG 58.983 55.000 0.00 0.00 42.31 4.00
4507 5410 2.112198 CACCGGCCACGCATACAAT 61.112 57.895 0.00 0.00 39.22 2.71
4518 5421 2.845752 TATGCACGTCTTCACCGGCC 62.846 60.000 0.00 0.00 0.00 6.13
4520 5423 0.930310 CATATGCACGTCTTCACCGG 59.070 55.000 0.00 0.00 0.00 5.28
4521 5424 1.640428 ACATATGCACGTCTTCACCG 58.360 50.000 1.58 0.00 0.00 4.94
4523 5426 8.515473 TTATACATACATATGCACGTCTTCAC 57.485 34.615 1.58 0.00 37.19 3.18
4528 5431 8.944927 CGTCTATTATACATACATATGCACGTC 58.055 37.037 1.58 0.00 37.19 4.34
4529 5432 8.456471 ACGTCTATTATACATACATATGCACGT 58.544 33.333 1.58 0.00 37.19 4.49
4530 5433 8.836959 ACGTCTATTATACATACATATGCACG 57.163 34.615 1.58 0.00 37.19 5.34
4649 5558 3.786635 ACATAACGAATGAGCAGTCTCC 58.213 45.455 9.04 0.00 39.07 3.71
4673 5582 7.408756 AAGCAATATGCCAGAATCAAGTAAA 57.591 32.000 0.00 0.00 46.52 2.01
4772 5684 8.555896 TTTTGTCCCCTTTACCTTTTCTTATT 57.444 30.769 0.00 0.00 0.00 1.40
4782 5694 2.168496 GCCTCTTTTGTCCCCTTTACC 58.832 52.381 0.00 0.00 0.00 2.85
4790 5702 0.591659 GACGTTGGCCTCTTTTGTCC 59.408 55.000 3.32 0.00 0.00 4.02
4807 5719 6.024049 CGTCCATTTTGCTTCTGAAATAGAC 58.976 40.000 0.00 0.00 34.43 2.59
4830 5742 4.167268 GAGAACACTAGCTTAGGACAACG 58.833 47.826 0.00 0.00 0.00 4.10
4831 5743 5.135508 TGAGAACACTAGCTTAGGACAAC 57.864 43.478 0.00 0.00 0.00 3.32
4832 5744 7.661536 ATATGAGAACACTAGCTTAGGACAA 57.338 36.000 0.00 0.00 0.00 3.18
4834 5746 6.926272 CCAATATGAGAACACTAGCTTAGGAC 59.074 42.308 0.00 0.00 0.00 3.85
4835 5747 6.611642 ACCAATATGAGAACACTAGCTTAGGA 59.388 38.462 0.00 0.00 0.00 2.94
4836 5748 6.821388 ACCAATATGAGAACACTAGCTTAGG 58.179 40.000 0.00 0.00 0.00 2.69
4837 5749 8.200792 AGAACCAATATGAGAACACTAGCTTAG 58.799 37.037 0.00 0.00 0.00 2.18
4838 5750 8.079211 AGAACCAATATGAGAACACTAGCTTA 57.921 34.615 0.00 0.00 0.00 3.09
4839 5751 6.951971 AGAACCAATATGAGAACACTAGCTT 58.048 36.000 0.00 0.00 0.00 3.74
4840 5752 6.155221 TGAGAACCAATATGAGAACACTAGCT 59.845 38.462 0.00 0.00 0.00 3.32
4841 5753 6.341316 TGAGAACCAATATGAGAACACTAGC 58.659 40.000 0.00 0.00 0.00 3.42
4844 5756 9.911788 AAATATGAGAACCAATATGAGAACACT 57.088 29.630 0.00 0.00 0.00 3.55
4880 6070 4.810345 TCCCCAACCAAGACACTAAAAAT 58.190 39.130 0.00 0.00 0.00 1.82
4916 6106 5.581085 CGGGGAACACTATTTTAACTCTGAG 59.419 44.000 2.45 2.45 0.00 3.35
4926 6116 0.696501 AGGTGCGGGGAACACTATTT 59.303 50.000 0.00 0.00 38.14 1.40
4935 6125 0.465460 GCATGAATAAGGTGCGGGGA 60.465 55.000 0.00 0.00 0.00 4.81
4940 6130 2.360165 CTCCCAAGCATGAATAAGGTGC 59.640 50.000 0.00 0.00 39.10 5.01
4943 6133 3.137176 TCTCCTCCCAAGCATGAATAAGG 59.863 47.826 0.00 0.00 0.00 2.69
4945 6135 3.523157 TGTCTCCTCCCAAGCATGAATAA 59.477 43.478 0.00 0.00 0.00 1.40
4956 6146 0.191064 ACTCCAAGTGTCTCCTCCCA 59.809 55.000 0.00 0.00 0.00 4.37
4993 6184 3.809832 AGATCTGTCAAAGACCAACAACG 59.190 43.478 0.00 0.00 37.88 4.10
5018 6217 7.438160 CCGTCAGAGACAACATAGCATATTTAA 59.562 37.037 0.00 0.00 32.09 1.52
5019 6218 6.923508 CCGTCAGAGACAACATAGCATATTTA 59.076 38.462 0.00 0.00 32.09 1.40
5021 6220 5.069119 TCCGTCAGAGACAACATAGCATATT 59.931 40.000 0.00 0.00 32.09 1.28
5022 6221 4.584743 TCCGTCAGAGACAACATAGCATAT 59.415 41.667 0.00 0.00 32.09 1.78
5024 6223 2.760650 TCCGTCAGAGACAACATAGCAT 59.239 45.455 0.00 0.00 32.09 3.79
5025 6224 2.167662 TCCGTCAGAGACAACATAGCA 58.832 47.619 0.00 0.00 32.09 3.49
5026 6225 2.941453 TCCGTCAGAGACAACATAGC 57.059 50.000 0.00 0.00 32.09 2.97
5027 6226 4.998788 TGAATCCGTCAGAGACAACATAG 58.001 43.478 0.00 0.00 32.09 2.23
5028 6227 5.105351 ACATGAATCCGTCAGAGACAACATA 60.105 40.000 0.00 0.00 40.43 2.29
5029 6228 3.961480 TGAATCCGTCAGAGACAACAT 57.039 42.857 0.00 0.00 32.09 2.71
5030 6229 3.006859 ACATGAATCCGTCAGAGACAACA 59.993 43.478 0.00 0.00 40.43 3.33
5055 6254 2.753966 CCATGAGCGCCCGTCAAAG 61.754 63.158 2.29 0.00 0.00 2.77
5060 6259 2.457743 TAACAACCATGAGCGCCCGT 62.458 55.000 2.29 0.00 0.00 5.28
5061 6260 1.705337 CTAACAACCATGAGCGCCCG 61.705 60.000 2.29 0.00 0.00 6.13
5068 6267 6.350103 TCTACAAACACACTAACAACCATGA 58.650 36.000 0.00 0.00 0.00 3.07
5069 6268 6.612247 TCTACAAACACACTAACAACCATG 57.388 37.500 0.00 0.00 0.00 3.66
5115 6314 3.547601 ACAAACGTCGCCGATTAAAAAG 58.452 40.909 0.00 0.00 37.88 2.27
5118 6317 2.287373 ACAACAAACGTCGCCGATTAAA 59.713 40.909 0.00 0.00 37.88 1.52
5121 6320 0.658897 AACAACAAACGTCGCCGATT 59.341 45.000 0.00 0.00 37.88 3.34
5125 6324 0.179158 ACCAAACAACAAACGTCGCC 60.179 50.000 0.00 0.00 0.00 5.54
5127 6326 0.911184 GCACCAAACAACAAACGTCG 59.089 50.000 0.00 0.00 0.00 5.12
5142 6341 0.663269 GCTTAAAGCACCAACGCACC 60.663 55.000 0.00 0.00 41.89 5.01
5143 6342 0.663269 GGCTTAAAGCACCAACGCAC 60.663 55.000 0.00 0.00 44.75 5.34
5144 6343 0.821711 AGGCTTAAAGCACCAACGCA 60.822 50.000 0.00 0.00 44.75 5.24
5145 6344 0.313987 AAGGCTTAAAGCACCAACGC 59.686 50.000 0.00 0.00 44.75 4.84
5146 6345 2.414161 GCTAAGGCTTAAAGCACCAACG 60.414 50.000 15.42 0.00 44.75 4.10
5147 6346 3.217599 GCTAAGGCTTAAAGCACCAAC 57.782 47.619 15.42 0.00 44.75 3.77
5196 6395 4.695455 CCTCAAAAGAGCCGACAAATCTTA 59.305 41.667 0.00 0.00 33.05 2.10
5212 6411 4.081406 CAATGTCATCACCCTCCTCAAAA 58.919 43.478 0.00 0.00 0.00 2.44
5219 6418 1.718757 GCGCCAATGTCATCACCCTC 61.719 60.000 0.00 0.00 0.00 4.30
5224 6423 1.132834 GAATGTGCGCCAATGTCATCA 59.867 47.619 4.18 0.00 0.00 3.07
5237 6436 5.221891 ACACATGAATAAGTCGAATGTGC 57.778 39.130 19.11 0.00 40.88 4.57
5254 6453 7.796054 ACTCCTAGCAATGACTATAAACACAT 58.204 34.615 0.00 0.00 0.00 3.21
5255 6454 7.182817 ACTCCTAGCAATGACTATAAACACA 57.817 36.000 0.00 0.00 0.00 3.72
5261 6460 6.839134 TCCTTGAACTCCTAGCAATGACTATA 59.161 38.462 0.00 0.00 0.00 1.31
5264 6463 3.840666 TCCTTGAACTCCTAGCAATGACT 59.159 43.478 0.00 0.00 0.00 3.41
5277 6476 2.736670 AACAAGCAGGTCCTTGAACT 57.263 45.000 8.71 0.00 43.79 3.01
5280 6479 4.469657 ACAAATAACAAGCAGGTCCTTGA 58.530 39.130 8.71 0.00 43.79 3.02
5283 6482 3.005791 GCAACAAATAACAAGCAGGTCCT 59.994 43.478 0.00 0.00 0.00 3.85
5301 6500 7.658261 ACAAAAGAAAGACCCTTATAAGCAAC 58.342 34.615 6.99 0.70 0.00 4.17
5303 6502 7.833285 AACAAAAGAAAGACCCTTATAAGCA 57.167 32.000 6.99 0.00 0.00 3.91
5304 6503 9.011095 AGTAACAAAAGAAAGACCCTTATAAGC 57.989 33.333 6.99 0.00 0.00 3.09
5410 6609 5.997129 TGTGAATCTTTTCAGCATGTAGACA 59.003 36.000 0.00 0.00 42.41 3.41
5411 6610 6.486253 TGTGAATCTTTTCAGCATGTAGAC 57.514 37.500 0.00 0.00 42.41 2.59
5414 6613 5.474532 AGCTTGTGAATCTTTTCAGCATGTA 59.525 36.000 0.00 0.00 42.41 2.29
5416 6615 4.806330 AGCTTGTGAATCTTTTCAGCATG 58.194 39.130 0.00 0.00 42.41 4.06
5418 6617 5.065914 AGTAGCTTGTGAATCTTTTCAGCA 58.934 37.500 0.00 0.00 42.41 4.41
5421 6620 7.217200 AGTGTAGTAGCTTGTGAATCTTTTCA 58.783 34.615 0.00 0.00 39.54 2.69
5450 6649 6.806739 CCCACGAGAAATTAATCCAAACTTTC 59.193 38.462 0.00 0.00 0.00 2.62
5456 6655 4.912586 TGTCCCACGAGAAATTAATCCAA 58.087 39.130 0.00 0.00 0.00 3.53
5458 6657 4.766375 TCTGTCCCACGAGAAATTAATCC 58.234 43.478 0.00 0.00 0.00 3.01
5479 6678 2.034879 CACACAGTCGCCCCACATC 61.035 63.158 0.00 0.00 0.00 3.06
5491 6690 0.109873 GTCCCGTCGACTACACACAG 60.110 60.000 14.70 0.00 38.57 3.66
5497 6697 0.453390 ATTTCCGTCCCGTCGACTAC 59.547 55.000 14.70 8.12 39.56 2.73
5501 6701 1.818959 AACCATTTCCGTCCCGTCGA 61.819 55.000 0.00 0.00 0.00 4.20
5502 6702 1.375013 AACCATTTCCGTCCCGTCG 60.375 57.895 0.00 0.00 0.00 5.12
5537 6737 4.454504 CAGCATATCTGATAACATGCAGCA 59.545 41.667 20.21 0.00 45.72 4.41
5538 6738 4.694037 TCAGCATATCTGATAACATGCAGC 59.306 41.667 20.21 8.98 46.34 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.