Multiple sequence alignment - TraesCS4B01G194500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G194500 chr4B 100.000 3598 0 0 1 3598 417772560 417768963 0.000000e+00 6645.0
1 TraesCS4B01G194500 chr4B 93.396 106 6 1 1 106 192578822 192578718 4.810000e-34 156.0
2 TraesCS4B01G194500 chr4D 88.408 2424 116 55 364 2688 338839086 338836729 0.000000e+00 2767.0
3 TraesCS4B01G194500 chr4D 90.502 916 72 10 2692 3598 338836555 338835646 0.000000e+00 1195.0
4 TraesCS4B01G194500 chr4D 83.459 266 37 3 100 358 8892242 8891977 1.290000e-59 241.0
5 TraesCS4B01G194500 chr4D 85.000 240 30 2 100 334 19401254 19401492 4.640000e-59 239.0
6 TraesCS4B01G194500 chr4A 93.467 995 29 13 1699 2687 133371607 133372571 0.000000e+00 1445.0
7 TraesCS4B01G194500 chr4A 87.210 1337 66 46 349 1619 133370273 133371570 0.000000e+00 1424.0
8 TraesCS4B01G194500 chr4A 86.982 169 16 5 2694 2860 133372748 133372912 6.130000e-43 185.0
9 TraesCS4B01G194500 chr6D 84.528 265 34 3 103 361 386242394 386242131 4.610000e-64 255.0
10 TraesCS4B01G194500 chr6D 86.441 59 8 0 2915 2973 354905776 354905834 8.340000e-07 65.8
11 TraesCS4B01G194500 chr2D 84.000 275 32 5 100 362 499718898 499718624 1.660000e-63 254.0
12 TraesCS4B01G194500 chr7B 86.640 247 6 2 1012 1258 336466143 336465924 7.710000e-62 248.0
13 TraesCS4B01G194500 chr7B 82.955 264 37 4 102 358 618129313 618129051 7.770000e-57 231.0
14 TraesCS4B01G194500 chr7B 94.118 102 6 0 1 102 633311614 633311715 4.810000e-34 156.0
15 TraesCS4B01G194500 chr7B 85.542 83 12 0 1445 1527 437423715 437423797 1.780000e-13 87.9
16 TraesCS4B01G194500 chr7B 93.617 47 3 0 2921 2967 198951371 198951325 1.790000e-08 71.3
17 TraesCS4B01G194500 chr3D 83.774 265 35 5 100 358 20754899 20755161 9.980000e-61 244.0
18 TraesCS4B01G194500 chr3D 93.750 48 3 0 2921 2968 608466457 608466504 4.980000e-09 73.1
19 TraesCS4B01G194500 chr7D 85.417 240 27 5 125 357 39722207 39722445 3.590000e-60 243.0
20 TraesCS4B01G194500 chr7D 84.553 246 30 4 125 362 383311811 383311566 1.670000e-58 237.0
21 TraesCS4B01G194500 chr7D 82.955 264 36 6 102 358 379845010 379845271 2.790000e-56 230.0
22 TraesCS4B01G194500 chr7D 84.524 84 13 0 1445 1528 421363367 421363450 2.300000e-12 84.2
23 TraesCS4B01G194500 chr2B 96.000 100 3 1 1 100 342451902 342452000 1.030000e-35 161.0
24 TraesCS4B01G194500 chr2B 93.396 106 7 0 1 106 250199940 250199835 1.340000e-34 158.0
25 TraesCS4B01G194500 chr2B 94.175 103 5 1 1 102 436332967 436332865 4.810000e-34 156.0
26 TraesCS4B01G194500 chr2B 93.617 47 3 0 2921 2967 672093953 672093999 1.790000e-08 71.3
27 TraesCS4B01G194500 chr5B 95.000 100 5 0 1 100 596566727 596566826 1.340000e-34 158.0
28 TraesCS4B01G194500 chr1A 92.035 113 8 1 1 113 464539328 464539439 1.340000e-34 158.0
29 TraesCS4B01G194500 chr1A 93.333 45 3 0 2921 2965 82533680 82533636 2.320000e-07 67.6
30 TraesCS4B01G194500 chr3B 91.304 115 8 1 1 113 650000385 650000271 4.810000e-34 156.0
31 TraesCS4B01G194500 chr6B 93.269 104 7 0 3 106 702283349 702283452 1.730000e-33 154.0
32 TraesCS4B01G194500 chr6B 92.000 50 3 1 2921 2970 203686518 203686566 6.450000e-08 69.4
33 TraesCS4B01G194500 chr7A 85.714 84 12 0 1445 1528 511795175 511795092 4.950000e-14 89.8
34 TraesCS4B01G194500 chr3A 91.837 49 3 1 2921 2968 448705012 448704964 2.320000e-07 67.6
35 TraesCS4B01G194500 chr5A 85.246 61 7 2 2921 2981 448616878 448616820 1.080000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G194500 chr4B 417768963 417772560 3597 True 6645 6645 100.000000 1 3598 1 chr4B.!!$R2 3597
1 TraesCS4B01G194500 chr4D 338835646 338839086 3440 True 1981 2767 89.455000 364 3598 2 chr4D.!!$R2 3234
2 TraesCS4B01G194500 chr4A 133370273 133372912 2639 False 1018 1445 89.219667 349 2860 3 chr4A.!!$F1 2511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 416 0.033504 ATTTCCCGATCCGACATCCG 59.966 55.0 0.0 0.0 38.18 4.18 F
764 804 0.103026 ATGCTAAGACGATCGCTGCA 59.897 50.0 16.6 18.2 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 2063 0.237498 GCTTGTGCACTCGGTAAACC 59.763 55.0 19.41 0.00 39.41 3.27 R
2600 2754 0.670546 CAGCAACAGTCCAGTACGGG 60.671 60.0 5.57 5.57 34.36 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.327854 CCTGAACTCGTAAATCTTGTGC 57.672 45.455 0.00 0.00 0.00 4.57
22 23 3.181530 CCTGAACTCGTAAATCTTGTGCG 60.182 47.826 0.00 0.00 0.00 5.34
23 24 3.386486 TGAACTCGTAAATCTTGTGCGT 58.614 40.909 0.00 0.00 0.00 5.24
24 25 4.548494 TGAACTCGTAAATCTTGTGCGTA 58.452 39.130 0.00 0.00 0.00 4.42
25 26 4.383649 TGAACTCGTAAATCTTGTGCGTAC 59.616 41.667 0.00 0.00 0.00 3.67
26 27 3.904571 ACTCGTAAATCTTGTGCGTACA 58.095 40.909 0.82 0.82 34.31 2.90
27 28 4.491676 ACTCGTAAATCTTGTGCGTACAT 58.508 39.130 7.30 0.00 36.53 2.29
28 29 4.561606 ACTCGTAAATCTTGTGCGTACATC 59.438 41.667 7.30 0.00 36.53 3.06
29 30 4.740268 TCGTAAATCTTGTGCGTACATCT 58.260 39.130 7.30 0.00 36.53 2.90
30 31 5.165676 TCGTAAATCTTGTGCGTACATCTT 58.834 37.500 7.30 1.61 36.53 2.40
31 32 5.287752 TCGTAAATCTTGTGCGTACATCTTC 59.712 40.000 7.30 0.00 36.53 2.87
32 33 5.061684 CGTAAATCTTGTGCGTACATCTTCA 59.938 40.000 7.30 0.00 36.53 3.02
33 34 4.928661 AATCTTGTGCGTACATCTTCAC 57.071 40.909 7.30 0.00 36.53 3.18
34 35 2.683968 TCTTGTGCGTACATCTTCACC 58.316 47.619 7.30 0.00 36.53 4.02
35 36 2.036604 TCTTGTGCGTACATCTTCACCA 59.963 45.455 7.30 0.00 36.53 4.17
36 37 1.790755 TGTGCGTACATCTTCACCAC 58.209 50.000 0.82 0.00 0.00 4.16
37 38 1.069358 TGTGCGTACATCTTCACCACA 59.931 47.619 0.82 0.00 0.00 4.17
38 39 1.726791 GTGCGTACATCTTCACCACAG 59.273 52.381 0.00 0.00 0.00 3.66
39 40 0.721718 GCGTACATCTTCACCACAGC 59.278 55.000 0.00 0.00 0.00 4.40
40 41 1.673033 GCGTACATCTTCACCACAGCT 60.673 52.381 0.00 0.00 0.00 4.24
41 42 1.995484 CGTACATCTTCACCACAGCTG 59.005 52.381 13.48 13.48 0.00 4.24
42 43 2.352715 CGTACATCTTCACCACAGCTGA 60.353 50.000 23.35 0.00 0.00 4.26
43 44 2.469274 ACATCTTCACCACAGCTGAG 57.531 50.000 23.35 13.32 0.00 3.35
44 45 1.973515 ACATCTTCACCACAGCTGAGA 59.026 47.619 23.35 12.04 0.00 3.27
45 46 2.570752 ACATCTTCACCACAGCTGAGAT 59.429 45.455 23.35 13.94 0.00 2.75
46 47 3.196463 CATCTTCACCACAGCTGAGATC 58.804 50.000 23.35 0.00 0.00 2.75
47 48 2.533916 TCTTCACCACAGCTGAGATCT 58.466 47.619 23.35 0.00 0.00 2.75
48 49 2.902486 TCTTCACCACAGCTGAGATCTT 59.098 45.455 23.35 0.00 0.00 2.40
49 50 2.756840 TCACCACAGCTGAGATCTTG 57.243 50.000 23.35 6.76 0.00 3.02
50 51 1.085091 CACCACAGCTGAGATCTTGC 58.915 55.000 23.35 12.08 0.00 4.01
51 52 0.035630 ACCACAGCTGAGATCTTGCC 60.036 55.000 23.35 0.00 0.00 4.52
52 53 0.252479 CCACAGCTGAGATCTTGCCT 59.748 55.000 23.35 0.00 0.00 4.75
53 54 1.654317 CACAGCTGAGATCTTGCCTC 58.346 55.000 23.35 0.00 0.00 4.70
54 55 1.207570 CACAGCTGAGATCTTGCCTCT 59.792 52.381 23.35 0.00 0.00 3.69
55 56 1.207570 ACAGCTGAGATCTTGCCTCTG 59.792 52.381 23.35 11.76 34.16 3.35
56 57 2.692817 GCTGAGATCTTGCCTCTGC 58.307 57.895 0.00 0.00 44.27 4.26
67 68 0.830648 TGCCTCTGCATACCTACACC 59.169 55.000 0.00 0.00 44.23 4.16
68 69 0.106894 GCCTCTGCATACCTACACCC 59.893 60.000 0.00 0.00 37.47 4.61
69 70 0.759346 CCTCTGCATACCTACACCCC 59.241 60.000 0.00 0.00 0.00 4.95
70 71 1.692762 CCTCTGCATACCTACACCCCT 60.693 57.143 0.00 0.00 0.00 4.79
71 72 2.119495 CTCTGCATACCTACACCCCTT 58.881 52.381 0.00 0.00 0.00 3.95
72 73 2.505819 CTCTGCATACCTACACCCCTTT 59.494 50.000 0.00 0.00 0.00 3.11
73 74 2.504175 TCTGCATACCTACACCCCTTTC 59.496 50.000 0.00 0.00 0.00 2.62
74 75 2.505819 CTGCATACCTACACCCCTTTCT 59.494 50.000 0.00 0.00 0.00 2.52
75 76 3.709653 CTGCATACCTACACCCCTTTCTA 59.290 47.826 0.00 0.00 0.00 2.10
76 77 3.453353 TGCATACCTACACCCCTTTCTAC 59.547 47.826 0.00 0.00 0.00 2.59
77 78 3.710165 GCATACCTACACCCCTTTCTACT 59.290 47.826 0.00 0.00 0.00 2.57
78 79 4.443034 GCATACCTACACCCCTTTCTACTG 60.443 50.000 0.00 0.00 0.00 2.74
79 80 3.271153 ACCTACACCCCTTTCTACTGT 57.729 47.619 0.00 0.00 0.00 3.55
80 81 3.171528 ACCTACACCCCTTTCTACTGTC 58.828 50.000 0.00 0.00 0.00 3.51
81 82 3.170717 CCTACACCCCTTTCTACTGTCA 58.829 50.000 0.00 0.00 0.00 3.58
82 83 3.195825 CCTACACCCCTTTCTACTGTCAG 59.804 52.174 0.00 0.00 0.00 3.51
83 84 2.690840 ACACCCCTTTCTACTGTCAGT 58.309 47.619 10.99 10.99 0.00 3.41
84 85 2.633481 ACACCCCTTTCTACTGTCAGTC 59.367 50.000 9.26 0.00 0.00 3.51
85 86 2.900546 CACCCCTTTCTACTGTCAGTCT 59.099 50.000 9.26 0.00 0.00 3.24
86 87 3.325135 CACCCCTTTCTACTGTCAGTCTT 59.675 47.826 9.26 0.00 0.00 3.01
87 88 4.527038 CACCCCTTTCTACTGTCAGTCTTA 59.473 45.833 9.26 0.00 0.00 2.10
88 89 4.773149 ACCCCTTTCTACTGTCAGTCTTAG 59.227 45.833 9.26 1.56 0.00 2.18
89 90 5.017490 CCCCTTTCTACTGTCAGTCTTAGA 58.983 45.833 9.26 4.23 0.00 2.10
90 91 5.480772 CCCCTTTCTACTGTCAGTCTTAGAA 59.519 44.000 9.26 10.43 0.00 2.10
91 92 6.391537 CCCTTTCTACTGTCAGTCTTAGAAC 58.608 44.000 9.26 0.00 0.00 3.01
92 93 6.391537 CCTTTCTACTGTCAGTCTTAGAACC 58.608 44.000 9.26 0.00 0.00 3.62
93 94 6.015350 CCTTTCTACTGTCAGTCTTAGAACCA 60.015 42.308 9.26 0.00 0.00 3.67
94 95 5.961396 TCTACTGTCAGTCTTAGAACCAC 57.039 43.478 9.26 0.00 0.00 4.16
95 96 3.644884 ACTGTCAGTCTTAGAACCACG 57.355 47.619 0.00 0.00 0.00 4.94
96 97 3.220110 ACTGTCAGTCTTAGAACCACGA 58.780 45.455 0.00 0.00 0.00 4.35
97 98 3.004524 ACTGTCAGTCTTAGAACCACGAC 59.995 47.826 0.00 0.00 0.00 4.34
98 99 2.953648 TGTCAGTCTTAGAACCACGACA 59.046 45.455 0.00 0.00 0.00 4.35
99 100 3.004419 TGTCAGTCTTAGAACCACGACAG 59.996 47.826 0.00 0.00 0.00 3.51
100 101 2.030185 TCAGTCTTAGAACCACGACAGC 60.030 50.000 0.00 0.00 0.00 4.40
101 102 1.068472 AGTCTTAGAACCACGACAGCG 60.068 52.381 0.00 0.00 44.79 5.18
102 103 0.242825 TCTTAGAACCACGACAGCGG 59.757 55.000 0.00 0.00 43.17 5.52
103 104 0.736325 CTTAGAACCACGACAGCGGG 60.736 60.000 0.00 0.00 43.17 6.13
104 105 2.775032 TTAGAACCACGACAGCGGGC 62.775 60.000 0.00 0.00 40.32 6.13
118 119 3.611674 GGGCGGGGGTTGTTGTTG 61.612 66.667 0.00 0.00 0.00 3.33
119 120 3.611674 GGCGGGGGTTGTTGTTGG 61.612 66.667 0.00 0.00 0.00 3.77
120 121 2.519780 GCGGGGGTTGTTGTTGGA 60.520 61.111 0.00 0.00 0.00 3.53
121 122 1.906333 GCGGGGGTTGTTGTTGGAT 60.906 57.895 0.00 0.00 0.00 3.41
122 123 1.963679 CGGGGGTTGTTGTTGGATG 59.036 57.895 0.00 0.00 0.00 3.51
123 124 0.538516 CGGGGGTTGTTGTTGGATGA 60.539 55.000 0.00 0.00 0.00 2.92
124 125 1.256812 GGGGGTTGTTGTTGGATGAG 58.743 55.000 0.00 0.00 0.00 2.90
125 126 1.256812 GGGGTTGTTGTTGGATGAGG 58.743 55.000 0.00 0.00 0.00 3.86
126 127 1.256812 GGGTTGTTGTTGGATGAGGG 58.743 55.000 0.00 0.00 0.00 4.30
127 128 1.256812 GGTTGTTGTTGGATGAGGGG 58.743 55.000 0.00 0.00 0.00 4.79
128 129 1.203001 GGTTGTTGTTGGATGAGGGGA 60.203 52.381 0.00 0.00 0.00 4.81
129 130 2.162681 GTTGTTGTTGGATGAGGGGAG 58.837 52.381 0.00 0.00 0.00 4.30
130 131 0.698238 TGTTGTTGGATGAGGGGAGG 59.302 55.000 0.00 0.00 0.00 4.30
131 132 0.681243 GTTGTTGGATGAGGGGAGGC 60.681 60.000 0.00 0.00 0.00 4.70
132 133 1.863155 TTGTTGGATGAGGGGAGGCC 61.863 60.000 0.00 0.00 0.00 5.19
133 134 2.127065 TTGGATGAGGGGAGGCCA 59.873 61.111 5.01 0.00 0.00 5.36
134 135 1.543642 TTGGATGAGGGGAGGCCAA 60.544 57.895 5.01 0.00 36.35 4.52
135 136 0.925720 TTGGATGAGGGGAGGCCAAT 60.926 55.000 5.01 0.00 33.96 3.16
136 137 1.152368 GGATGAGGGGAGGCCAATG 59.848 63.158 5.01 0.00 0.00 2.82
137 138 1.649271 GGATGAGGGGAGGCCAATGT 61.649 60.000 5.01 0.00 0.00 2.71
138 139 0.466922 GATGAGGGGAGGCCAATGTG 60.467 60.000 5.01 0.00 0.00 3.21
139 140 2.440980 GAGGGGAGGCCAATGTGC 60.441 66.667 5.01 0.00 0.00 4.57
147 148 3.747976 GCCAATGTGCCACCGACC 61.748 66.667 0.00 0.00 0.00 4.79
148 149 2.282110 CCAATGTGCCACCGACCA 60.282 61.111 0.00 0.00 0.00 4.02
149 150 2.334946 CCAATGTGCCACCGACCAG 61.335 63.158 0.00 0.00 0.00 4.00
150 151 2.672996 AATGTGCCACCGACCAGC 60.673 61.111 0.00 0.00 0.00 4.85
159 160 4.504916 CCGACCAGCGAGCCAGAG 62.505 72.222 0.00 0.00 44.57 3.35
160 161 4.504916 CGACCAGCGAGCCAGAGG 62.505 72.222 0.00 0.00 44.57 3.69
161 162 3.071206 GACCAGCGAGCCAGAGGA 61.071 66.667 0.00 0.00 0.00 3.71
162 163 2.604686 ACCAGCGAGCCAGAGGAA 60.605 61.111 0.00 0.00 0.00 3.36
163 164 2.186384 CCAGCGAGCCAGAGGAAG 59.814 66.667 0.00 0.00 0.00 3.46
164 165 2.354401 CCAGCGAGCCAGAGGAAGA 61.354 63.158 0.00 0.00 0.00 2.87
165 166 1.593787 CAGCGAGCCAGAGGAAGAA 59.406 57.895 0.00 0.00 0.00 2.52
166 167 0.459934 CAGCGAGCCAGAGGAAGAAG 60.460 60.000 0.00 0.00 0.00 2.85
167 168 0.613292 AGCGAGCCAGAGGAAGAAGA 60.613 55.000 0.00 0.00 0.00 2.87
168 169 0.247736 GCGAGCCAGAGGAAGAAGAA 59.752 55.000 0.00 0.00 0.00 2.52
169 170 1.738700 GCGAGCCAGAGGAAGAAGAAG 60.739 57.143 0.00 0.00 0.00 2.85
170 171 1.134848 CGAGCCAGAGGAAGAAGAAGG 60.135 57.143 0.00 0.00 0.00 3.46
171 172 0.617935 AGCCAGAGGAAGAAGAAGGC 59.382 55.000 0.00 0.00 40.85 4.35
172 173 0.326264 GCCAGAGGAAGAAGAAGGCA 59.674 55.000 0.00 0.00 40.29 4.75
173 174 1.271597 GCCAGAGGAAGAAGAAGGCAA 60.272 52.381 0.00 0.00 40.29 4.52
174 175 2.709213 CCAGAGGAAGAAGAAGGCAAG 58.291 52.381 0.00 0.00 0.00 4.01
175 176 2.083002 CAGAGGAAGAAGAAGGCAAGC 58.917 52.381 0.00 0.00 0.00 4.01
176 177 1.082690 GAGGAAGAAGAAGGCAAGCG 58.917 55.000 0.00 0.00 0.00 4.68
177 178 0.398318 AGGAAGAAGAAGGCAAGCGT 59.602 50.000 0.00 0.00 0.00 5.07
178 179 0.519077 GGAAGAAGAAGGCAAGCGTG 59.481 55.000 0.00 0.00 0.00 5.34
188 189 4.354212 CAAGCGTGCACGTGACCG 62.354 66.667 36.80 20.32 42.22 4.79
217 218 4.204891 CGCCGACGCAAATCCGAC 62.205 66.667 0.00 0.00 34.03 4.79
218 219 2.813908 GCCGACGCAAATCCGACT 60.814 61.111 0.00 0.00 34.03 4.18
219 220 1.517694 GCCGACGCAAATCCGACTA 60.518 57.895 0.00 0.00 34.03 2.59
220 221 1.079875 GCCGACGCAAATCCGACTAA 61.080 55.000 0.00 0.00 34.03 2.24
221 222 1.352114 CCGACGCAAATCCGACTAAA 58.648 50.000 0.00 0.00 0.00 1.85
222 223 1.727880 CCGACGCAAATCCGACTAAAA 59.272 47.619 0.00 0.00 0.00 1.52
223 224 2.158058 CCGACGCAAATCCGACTAAAAA 59.842 45.455 0.00 0.00 0.00 1.94
240 241 3.998913 AAAAATGGGCCGAAAATGGAT 57.001 38.095 0.00 0.00 0.00 3.41
241 242 3.541996 AAAATGGGCCGAAAATGGATC 57.458 42.857 0.00 0.00 0.00 3.36
242 243 2.157640 AATGGGCCGAAAATGGATCA 57.842 45.000 0.00 0.00 0.00 2.92
243 244 1.402787 ATGGGCCGAAAATGGATCAC 58.597 50.000 0.00 0.00 0.00 3.06
244 245 0.682855 TGGGCCGAAAATGGATCACC 60.683 55.000 0.00 0.00 0.00 4.02
245 246 1.391933 GGGCCGAAAATGGATCACCC 61.392 60.000 0.00 0.00 34.81 4.61
246 247 1.724582 GGCCGAAAATGGATCACCCG 61.725 60.000 0.00 0.00 37.93 5.28
247 248 1.727467 CCGAAAATGGATCACCCGC 59.273 57.895 0.00 0.00 37.93 6.13
248 249 1.029408 CCGAAAATGGATCACCCGCA 61.029 55.000 0.00 0.00 37.93 5.69
249 250 0.378257 CGAAAATGGATCACCCGCAG 59.622 55.000 0.00 0.00 37.93 5.18
250 251 1.750193 GAAAATGGATCACCCGCAGA 58.250 50.000 0.00 0.00 37.93 4.26
251 252 1.401905 GAAAATGGATCACCCGCAGAC 59.598 52.381 0.00 0.00 37.93 3.51
252 253 0.744414 AAATGGATCACCCGCAGACG 60.744 55.000 0.00 0.00 37.93 4.18
253 254 1.613317 AATGGATCACCCGCAGACGA 61.613 55.000 0.00 0.00 43.93 4.20
254 255 1.613317 ATGGATCACCCGCAGACGAA 61.613 55.000 0.00 0.00 43.93 3.85
255 256 1.079405 GGATCACCCGCAGACGAAA 60.079 57.895 0.00 0.00 43.93 3.46
256 257 0.672401 GGATCACCCGCAGACGAAAA 60.672 55.000 0.00 0.00 43.93 2.29
257 258 0.442699 GATCACCCGCAGACGAAAAC 59.557 55.000 0.00 0.00 43.93 2.43
258 259 0.953960 ATCACCCGCAGACGAAAACC 60.954 55.000 0.00 0.00 43.93 3.27
259 260 2.663852 ACCCGCAGACGAAAACCG 60.664 61.111 0.00 0.00 43.93 4.44
260 261 3.419759 CCCGCAGACGAAAACCGG 61.420 66.667 0.00 0.00 43.93 5.28
261 262 2.356553 CCGCAGACGAAAACCGGA 60.357 61.111 9.46 0.00 43.93 5.14
262 263 1.740296 CCGCAGACGAAAACCGGAT 60.740 57.895 9.46 0.00 43.93 4.18
263 264 1.419922 CGCAGACGAAAACCGGATG 59.580 57.895 9.46 0.00 43.93 3.51
264 265 1.134694 GCAGACGAAAACCGGATGC 59.865 57.895 9.46 1.09 43.12 3.91
265 266 1.794222 CAGACGAAAACCGGATGCC 59.206 57.895 9.46 0.00 43.93 4.40
267 268 2.030958 GACGAAAACCGGATGCCGT 61.031 57.895 9.46 12.59 46.80 5.68
268 269 1.571215 GACGAAAACCGGATGCCGTT 61.571 55.000 9.46 0.00 46.80 4.44
269 270 1.167781 ACGAAAACCGGATGCCGTTT 61.168 50.000 9.46 0.00 46.80 3.60
270 271 0.727793 CGAAAACCGGATGCCGTTTG 60.728 55.000 9.46 0.00 46.80 2.93
271 272 0.594110 GAAAACCGGATGCCGTTTGA 59.406 50.000 9.46 0.00 46.80 2.69
272 273 0.596082 AAAACCGGATGCCGTTTGAG 59.404 50.000 9.46 0.00 46.80 3.02
273 274 0.536460 AAACCGGATGCCGTTTGAGT 60.536 50.000 9.46 0.00 46.80 3.41
274 275 0.953960 AACCGGATGCCGTTTGAGTC 60.954 55.000 9.46 0.00 46.80 3.36
275 276 2.452813 CCGGATGCCGTTTGAGTCG 61.453 63.158 0.00 0.00 46.80 4.18
281 282 3.118454 CCGTTTGAGTCGGCGCAT 61.118 61.111 10.83 0.00 41.48 4.73
282 283 2.677003 CCGTTTGAGTCGGCGCATT 61.677 57.895 10.83 0.00 41.48 3.56
283 284 1.509787 CGTTTGAGTCGGCGCATTG 60.510 57.895 10.83 0.00 0.00 2.82
284 285 1.154225 GTTTGAGTCGGCGCATTGG 60.154 57.895 10.83 0.00 0.00 3.16
285 286 1.302112 TTTGAGTCGGCGCATTGGA 60.302 52.632 10.83 0.00 0.00 3.53
286 287 1.573829 TTTGAGTCGGCGCATTGGAC 61.574 55.000 10.83 10.83 0.00 4.02
287 288 3.195698 GAGTCGGCGCATTGGACC 61.196 66.667 10.83 1.83 0.00 4.46
293 294 3.747976 GCGCATTGGACCGCCTTT 61.748 61.111 0.30 0.00 44.10 3.11
294 295 2.961768 CGCATTGGACCGCCTTTT 59.038 55.556 0.00 0.00 34.31 2.27
295 296 1.444212 CGCATTGGACCGCCTTTTG 60.444 57.895 0.00 0.00 34.31 2.44
296 297 1.665442 GCATTGGACCGCCTTTTGT 59.335 52.632 0.00 0.00 34.31 2.83
297 298 0.667184 GCATTGGACCGCCTTTTGTG 60.667 55.000 0.00 0.00 34.31 3.33
298 299 0.673437 CATTGGACCGCCTTTTGTGT 59.327 50.000 0.00 0.00 34.31 3.72
299 300 0.958822 ATTGGACCGCCTTTTGTGTC 59.041 50.000 0.00 0.00 34.31 3.67
300 301 1.104577 TTGGACCGCCTTTTGTGTCC 61.105 55.000 0.00 0.00 34.31 4.02
301 302 2.613506 GGACCGCCTTTTGTGTCCG 61.614 63.158 0.00 0.00 0.00 4.79
302 303 3.249973 GACCGCCTTTTGTGTCCGC 62.250 63.158 0.00 0.00 0.00 5.54
303 304 4.383602 CCGCCTTTTGTGTCCGCG 62.384 66.667 0.00 0.00 42.37 6.46
305 306 4.700365 GCCTTTTGTGTCCGCGCC 62.700 66.667 0.00 0.00 0.00 6.53
306 307 4.383602 CCTTTTGTGTCCGCGCCG 62.384 66.667 0.00 0.00 0.00 6.46
307 308 3.342627 CTTTTGTGTCCGCGCCGA 61.343 61.111 0.00 0.00 0.00 5.54
308 309 2.666862 TTTTGTGTCCGCGCCGAT 60.667 55.556 0.00 0.00 0.00 4.18
309 310 2.182614 CTTTTGTGTCCGCGCCGATT 62.183 55.000 0.00 0.00 0.00 3.34
310 311 2.177654 TTTTGTGTCCGCGCCGATTC 62.178 55.000 0.00 0.00 0.00 2.52
311 312 3.867700 TTGTGTCCGCGCCGATTCA 62.868 57.895 0.00 1.78 0.00 2.57
312 313 3.115892 GTGTCCGCGCCGATTCAA 61.116 61.111 0.00 0.00 0.00 2.69
313 314 2.357638 TGTCCGCGCCGATTCAAA 60.358 55.556 0.00 0.00 0.00 2.69
314 315 2.097728 GTCCGCGCCGATTCAAAC 59.902 61.111 0.00 0.00 0.00 2.93
315 316 3.483665 TCCGCGCCGATTCAAACG 61.484 61.111 0.00 0.00 0.00 3.60
322 323 2.394136 CGATTCAAACGGACGGCG 59.606 61.111 4.80 4.80 0.00 6.46
323 324 2.089936 CGATTCAAACGGACGGCGA 61.090 57.895 16.62 0.00 0.00 5.54
324 325 1.418755 GATTCAAACGGACGGCGAC 59.581 57.895 16.62 7.58 0.00 5.19
336 337 3.384927 GGCGACGGACGAAATCTG 58.615 61.111 3.67 0.00 45.77 2.90
340 341 4.164252 ACGGACGAAATCTGTCGC 57.836 55.556 0.00 0.00 44.14 5.19
341 342 1.445582 ACGGACGAAATCTGTCGCC 60.446 57.895 0.00 0.00 44.14 5.54
342 343 2.165301 CGGACGAAATCTGTCGCCC 61.165 63.158 0.00 0.00 45.00 6.13
343 344 1.218316 GGACGAAATCTGTCGCCCT 59.782 57.895 0.00 0.00 45.00 5.19
344 345 0.391263 GGACGAAATCTGTCGCCCTT 60.391 55.000 0.00 0.00 45.00 3.95
345 346 1.439679 GACGAAATCTGTCGCCCTTT 58.560 50.000 0.00 0.00 45.00 3.11
346 347 1.128692 GACGAAATCTGTCGCCCTTTG 59.871 52.381 0.00 0.00 45.00 2.77
347 348 1.270625 ACGAAATCTGTCGCCCTTTGA 60.271 47.619 0.00 0.00 45.00 2.69
348 349 1.804151 CGAAATCTGTCGCCCTTTGAA 59.196 47.619 0.00 0.00 33.66 2.69
349 350 2.159653 CGAAATCTGTCGCCCTTTGAAG 60.160 50.000 0.00 0.00 33.66 3.02
350 351 2.568623 AATCTGTCGCCCTTTGAAGT 57.431 45.000 0.00 0.00 0.00 3.01
351 352 2.568623 ATCTGTCGCCCTTTGAAGTT 57.431 45.000 0.00 0.00 0.00 2.66
352 353 1.593196 TCTGTCGCCCTTTGAAGTTG 58.407 50.000 0.00 0.00 0.00 3.16
353 354 0.040067 CTGTCGCCCTTTGAAGTTGC 60.040 55.000 0.00 0.00 0.00 4.17
354 355 0.465460 TGTCGCCCTTTGAAGTTGCT 60.465 50.000 0.00 0.00 0.00 3.91
355 356 0.238553 GTCGCCCTTTGAAGTTGCTC 59.761 55.000 0.00 0.00 0.00 4.26
356 357 0.108585 TCGCCCTTTGAAGTTGCTCT 59.891 50.000 0.00 0.00 0.00 4.09
357 358 0.954452 CGCCCTTTGAAGTTGCTCTT 59.046 50.000 0.00 0.00 39.32 2.85
358 359 1.335324 CGCCCTTTGAAGTTGCTCTTG 60.335 52.381 0.00 0.00 36.40 3.02
359 360 1.683385 GCCCTTTGAAGTTGCTCTTGT 59.317 47.619 0.00 0.00 36.40 3.16
360 361 2.544486 GCCCTTTGAAGTTGCTCTTGTG 60.544 50.000 0.00 0.00 36.40 3.33
361 362 2.689983 CCCTTTGAAGTTGCTCTTGTGT 59.310 45.455 0.00 0.00 36.40 3.72
362 363 3.243201 CCCTTTGAAGTTGCTCTTGTGTC 60.243 47.826 0.00 0.00 36.40 3.67
415 416 0.033504 ATTTCCCGATCCGACATCCG 59.966 55.000 0.00 0.00 38.18 4.18
433 442 4.137879 GCATGGCAGCCACTAGAG 57.862 61.111 19.10 5.78 35.80 2.43
437 446 2.300152 GCATGGCAGCCACTAGAGTATA 59.700 50.000 19.10 0.00 35.80 1.47
438 447 3.244215 GCATGGCAGCCACTAGAGTATAA 60.244 47.826 19.10 0.00 35.80 0.98
463 474 1.448540 CTAGCTTGGCCCGTGACAG 60.449 63.158 0.00 0.00 0.00 3.51
476 487 1.592400 TGACAGCGTGCAGACAGTG 60.592 57.895 0.00 0.00 0.00 3.66
489 500 2.456627 ACAGTGCCCATCTGTCACT 58.543 52.632 0.00 0.00 41.52 3.41
492 503 0.612229 AGTGCCCATCTGTCACTCAG 59.388 55.000 0.00 0.00 44.85 3.35
547 558 4.063689 CAGATTCGCTGCCTCAAATAGAT 58.936 43.478 0.00 0.00 37.90 1.98
553 564 2.813354 GCTGCCTCAAATAGATGGGGAG 60.813 54.545 0.00 0.00 44.28 4.30
626 639 4.273257 TTCGACGGTGCGTGCAGA 62.273 61.111 0.00 0.00 41.37 4.26
627 640 4.994201 TCGACGGTGCGTGCAGAC 62.994 66.667 0.00 0.00 41.37 3.51
629 642 2.738521 GACGGTGCGTGCAGACAT 60.739 61.111 0.00 0.00 41.37 3.06
713 732 1.663739 GTCTACGTGCACCACAGGA 59.336 57.895 12.15 0.00 37.59 3.86
725 745 1.118838 CCACAGGAAAGGGCAACAAA 58.881 50.000 0.00 0.00 39.74 2.83
726 746 1.202521 CCACAGGAAAGGGCAACAAAC 60.203 52.381 0.00 0.00 39.74 2.93
727 747 1.119684 ACAGGAAAGGGCAACAAACC 58.880 50.000 0.00 0.00 39.74 3.27
755 795 3.165058 TCCACTGCTAATGCTAAGACG 57.835 47.619 0.00 0.00 40.48 4.18
756 796 2.758423 TCCACTGCTAATGCTAAGACGA 59.242 45.455 0.00 0.00 40.48 4.20
757 797 3.384789 TCCACTGCTAATGCTAAGACGAT 59.615 43.478 0.00 0.00 40.48 3.73
758 798 3.738282 CCACTGCTAATGCTAAGACGATC 59.262 47.826 0.00 0.00 40.48 3.69
759 799 3.423536 CACTGCTAATGCTAAGACGATCG 59.576 47.826 14.88 14.88 40.48 3.69
760 800 2.394708 TGCTAATGCTAAGACGATCGC 58.605 47.619 16.60 8.27 40.48 4.58
761 801 2.034685 TGCTAATGCTAAGACGATCGCT 59.965 45.455 16.60 10.66 40.48 4.93
762 802 2.406691 GCTAATGCTAAGACGATCGCTG 59.593 50.000 16.60 4.02 36.03 5.18
763 803 1.212616 AATGCTAAGACGATCGCTGC 58.787 50.000 16.60 13.58 0.00 5.25
764 804 0.103026 ATGCTAAGACGATCGCTGCA 59.897 50.000 16.60 18.20 0.00 4.41
765 805 0.108851 TGCTAAGACGATCGCTGCAA 60.109 50.000 16.60 2.79 0.00 4.08
766 806 0.999406 GCTAAGACGATCGCTGCAAA 59.001 50.000 16.60 0.00 0.00 3.68
767 807 1.267087 GCTAAGACGATCGCTGCAAAC 60.267 52.381 16.60 0.00 0.00 2.93
768 808 0.989164 TAAGACGATCGCTGCAAACG 59.011 50.000 16.60 2.48 0.00 3.60
769 809 2.227968 AAGACGATCGCTGCAAACGC 62.228 55.000 16.60 0.00 0.00 4.84
770 810 3.702334 GACGATCGCTGCAAACGCC 62.702 63.158 16.60 0.00 0.00 5.68
771 811 3.490759 CGATCGCTGCAAACGCCT 61.491 61.111 0.26 0.00 0.00 5.52
772 812 2.099062 GATCGCTGCAAACGCCTG 59.901 61.111 0.00 0.00 0.00 4.85
812 878 4.142138 ACAACTCGATCTTACCCTCACATC 60.142 45.833 0.00 0.00 0.00 3.06
813 879 3.632333 ACTCGATCTTACCCTCACATCA 58.368 45.455 0.00 0.00 0.00 3.07
814 880 3.381908 ACTCGATCTTACCCTCACATCAC 59.618 47.826 0.00 0.00 0.00 3.06
815 881 3.361786 TCGATCTTACCCTCACATCACA 58.638 45.455 0.00 0.00 0.00 3.58
816 882 3.960755 TCGATCTTACCCTCACATCACAT 59.039 43.478 0.00 0.00 0.00 3.21
831 897 1.847506 ACATGCACACCTCCCCTGA 60.848 57.895 0.00 0.00 0.00 3.86
866 932 6.072948 TCGCTCTCCTAATAATTCTCTCTTCG 60.073 42.308 0.00 0.00 0.00 3.79
871 937 9.137459 TCTCCTAATAATTCTCTCTTCGTTCAT 57.863 33.333 0.00 0.00 0.00 2.57
882 955 3.906660 TCGTTCATTCACGAGCCTT 57.093 47.368 0.00 0.00 44.18 4.35
972 1059 1.374947 CGGAGGAAAGGTGGCTTCA 59.625 57.895 0.00 0.00 0.00 3.02
991 1078 4.357918 TCACTTTCCCTTTCCTTCTCTG 57.642 45.455 0.00 0.00 0.00 3.35
992 1079 3.716872 TCACTTTCCCTTTCCTTCTCTGT 59.283 43.478 0.00 0.00 0.00 3.41
993 1080 3.817647 CACTTTCCCTTTCCTTCTCTGTG 59.182 47.826 0.00 0.00 0.00 3.66
994 1081 3.459969 ACTTTCCCTTTCCTTCTCTGTGT 59.540 43.478 0.00 0.00 0.00 3.72
995 1082 3.492102 TTCCCTTTCCTTCTCTGTGTG 57.508 47.619 0.00 0.00 0.00 3.82
1304 1402 2.412112 CGAGCTACCCAGGTACGC 59.588 66.667 9.11 9.11 30.99 4.42
1305 1403 2.412112 GAGCTACCCAGGTACGCG 59.588 66.667 3.53 3.53 33.35 6.01
1306 1404 3.769875 GAGCTACCCAGGTACGCGC 62.770 68.421 5.73 0.00 33.35 6.86
1374 1497 1.744798 GCATGCTGCAGAGATGTGGTA 60.745 52.381 20.43 0.00 44.26 3.25
1485 1612 2.499685 GACTCGCTGGGCCGTAAT 59.500 61.111 0.00 0.00 0.00 1.89
1602 1733 0.179086 TACGTGTGCGATCCATGCAT 60.179 50.000 0.00 0.00 45.34 3.96
1603 1734 1.010462 CGTGTGCGATCCATGCATG 60.010 57.895 20.19 20.19 45.34 4.06
1608 1739 1.875514 GTGCGATCCATGCATGTACAT 59.124 47.619 24.58 13.43 45.34 2.29
1620 1751 1.721389 CATGTACATGCGCTCGATACC 59.279 52.381 22.27 0.00 31.39 2.73
1621 1752 0.741915 TGTACATGCGCTCGATACCA 59.258 50.000 9.73 0.00 0.00 3.25
1622 1753 1.339929 TGTACATGCGCTCGATACCAT 59.660 47.619 9.73 0.00 0.00 3.55
1623 1754 1.721389 GTACATGCGCTCGATACCATG 59.279 52.381 9.73 14.17 40.54 3.66
1624 1755 0.601046 ACATGCGCTCGATACCATGG 60.601 55.000 11.19 11.19 39.39 3.66
1625 1756 0.319813 CATGCGCTCGATACCATGGA 60.320 55.000 21.47 2.01 33.28 3.41
1626 1757 0.319900 ATGCGCTCGATACCATGGAC 60.320 55.000 21.47 8.46 0.00 4.02
1627 1758 1.067416 GCGCTCGATACCATGGACA 59.933 57.895 21.47 5.94 0.00 4.02
1628 1759 0.319900 GCGCTCGATACCATGGACAT 60.320 55.000 21.47 11.19 0.00 3.06
1629 1760 1.422388 CGCTCGATACCATGGACATG 58.578 55.000 21.47 5.59 38.51 3.21
1630 1761 1.269778 CGCTCGATACCATGGACATGT 60.270 52.381 21.47 0.00 37.11 3.21
1631 1762 2.803133 CGCTCGATACCATGGACATGTT 60.803 50.000 21.47 0.00 37.11 2.71
1632 1763 3.552068 CGCTCGATACCATGGACATGTTA 60.552 47.826 21.47 0.00 37.11 2.41
1647 1779 5.391312 ACATGTTATTCTTCTTGTTGGGC 57.609 39.130 0.00 0.00 0.00 5.36
1650 1782 5.860941 TGTTATTCTTCTTGTTGGGCAAA 57.139 34.783 0.00 0.00 36.53 3.68
1655 1787 2.145536 CTTCTTGTTGGGCAAATTGGC 58.854 47.619 11.36 11.36 42.88 4.52
1656 1788 1.126488 TCTTGTTGGGCAAATTGGCA 58.874 45.000 20.97 4.85 45.76 4.92
1657 1789 1.487976 TCTTGTTGGGCAAATTGGCAA 59.512 42.857 20.97 7.26 45.76 4.52
1658 1790 1.603326 CTTGTTGGGCAAATTGGCAAC 59.397 47.619 20.97 20.11 45.76 4.17
1659 1791 0.835941 TGTTGGGCAAATTGGCAACT 59.164 45.000 20.97 0.00 45.76 3.16
1660 1792 1.228533 GTTGGGCAAATTGGCAACTG 58.771 50.000 20.97 4.28 45.76 3.16
1661 1793 0.534652 TTGGGCAAATTGGCAACTGC 60.535 50.000 20.97 21.86 45.76 4.40
1662 1794 1.071128 GGGCAAATTGGCAACTGCA 59.929 52.632 27.63 0.00 45.76 4.41
1663 1795 0.952010 GGGCAAATTGGCAACTGCAG 60.952 55.000 27.63 13.48 45.76 4.41
1665 1797 1.893168 GCAAATTGGCAACTGCAGCG 61.893 55.000 23.93 6.49 44.36 5.18
1666 1798 1.005867 AAATTGGCAACTGCAGCGG 60.006 52.632 15.27 7.29 44.36 5.52
1667 1799 1.747325 AAATTGGCAACTGCAGCGGT 61.747 50.000 15.27 0.00 44.36 5.68
1669 1801 3.772853 TTGGCAACTGCAGCGGTCT 62.773 57.895 15.27 0.00 44.36 3.85
1670 1802 2.980233 GGCAACTGCAGCGGTCTT 60.980 61.111 15.27 0.00 44.36 3.01
1671 1803 1.671054 GGCAACTGCAGCGGTCTTA 60.671 57.895 15.27 0.00 44.36 2.10
1672 1804 1.497722 GCAACTGCAGCGGTCTTAC 59.502 57.895 15.27 0.00 41.59 2.34
1673 1805 0.951040 GCAACTGCAGCGGTCTTACT 60.951 55.000 15.27 0.00 41.59 2.24
1674 1806 1.671850 GCAACTGCAGCGGTCTTACTA 60.672 52.381 15.27 0.00 41.59 1.82
1675 1807 2.263077 CAACTGCAGCGGTCTTACTAG 58.737 52.381 15.27 0.00 0.00 2.57
1677 1809 2.719739 ACTGCAGCGGTCTTACTAGTA 58.280 47.619 15.27 0.00 0.00 1.82
1678 1810 2.683867 ACTGCAGCGGTCTTACTAGTAG 59.316 50.000 15.27 0.00 0.00 2.57
1679 1811 2.683867 CTGCAGCGGTCTTACTAGTAGT 59.316 50.000 8.14 8.14 0.00 2.73
1680 1812 3.875727 CTGCAGCGGTCTTACTAGTAGTA 59.124 47.826 0.00 5.90 0.00 1.82
1681 1813 4.264253 TGCAGCGGTCTTACTAGTAGTAA 58.736 43.478 19.32 19.32 38.28 2.24
1682 1814 4.885907 TGCAGCGGTCTTACTAGTAGTAAT 59.114 41.667 20.44 4.80 39.68 1.89
1683 1815 5.359009 TGCAGCGGTCTTACTAGTAGTAATT 59.641 40.000 20.44 3.40 39.68 1.40
1684 1816 5.914074 GCAGCGGTCTTACTAGTAGTAATTC 59.086 44.000 20.44 15.81 39.68 2.17
1685 1817 6.437094 CAGCGGTCTTACTAGTAGTAATTCC 58.563 44.000 20.44 21.05 39.68 3.01
1686 1818 6.262720 CAGCGGTCTTACTAGTAGTAATTCCT 59.737 42.308 20.44 11.22 39.68 3.36
1687 1819 7.443575 CAGCGGTCTTACTAGTAGTAATTCCTA 59.556 40.741 20.44 0.81 39.68 2.94
1688 1820 7.995488 AGCGGTCTTACTAGTAGTAATTCCTAA 59.005 37.037 20.44 1.85 39.68 2.69
1689 1821 8.791675 GCGGTCTTACTAGTAGTAATTCCTAAT 58.208 37.037 20.44 0.00 39.68 1.73
1737 1869 2.093973 CGAGCTGGTGGTGTCTTTCTAT 60.094 50.000 0.00 0.00 0.00 1.98
1931 2063 6.484977 AGTTTCTTTCTCTCCAGTTTAGCTTG 59.515 38.462 0.00 0.00 0.00 4.01
1995 2144 1.221635 CAGGTGGGATTACATGGGGA 58.778 55.000 0.00 0.00 0.00 4.81
2208 2362 6.247676 TCACACCCTGTATTACACTGTACTA 58.752 40.000 0.00 0.00 0.00 1.82
2209 2363 6.376299 TCACACCCTGTATTACACTGTACTAG 59.624 42.308 0.00 0.00 0.00 2.57
2210 2364 6.152323 CACACCCTGTATTACACTGTACTAGT 59.848 42.308 0.00 0.00 41.36 2.57
2215 2369 9.148104 CCCTGTATTACACTGTACTAGTTTTTC 57.852 37.037 0.00 0.00 37.60 2.29
2249 2403 8.870242 AATTACAGTTTTATAACGCGACTTTC 57.130 30.769 15.93 0.00 39.31 2.62
2294 2448 2.780924 AAGGAGTGGCCCAACCCA 60.781 61.111 0.00 0.00 37.83 4.51
2348 2502 1.053835 TGACTGGGCTCAACTCCACA 61.054 55.000 0.00 0.00 0.00 4.17
2394 2548 1.495584 GACGAAAACGGTGCTGCAGA 61.496 55.000 20.43 0.00 0.00 4.26
2395 2549 1.082756 CGAAAACGGTGCTGCAGAC 60.083 57.895 20.43 12.61 0.00 3.51
2403 2557 1.180029 GGTGCTGCAGACCATGAAAT 58.820 50.000 20.43 0.00 33.25 2.17
2600 2754 3.873952 CCTTGCTCTTCTACCAATAGCAC 59.126 47.826 0.00 0.00 42.50 4.40
2613 2767 1.112113 ATAGCACCCGTACTGGACTG 58.888 55.000 10.68 0.00 42.00 3.51
2616 2770 0.949105 GCACCCGTACTGGACTGTTG 60.949 60.000 10.68 0.00 42.00 3.33
2625 2779 1.610522 ACTGGACTGTTGCTGCATTTC 59.389 47.619 1.84 0.00 0.00 2.17
2666 2820 8.354711 TGCAGTGTTGGTATTAATTATTTCCA 57.645 30.769 0.00 2.58 0.00 3.53
2688 2842 4.200838 TCTGATTTTCGCTGTGGATGTA 57.799 40.909 0.00 0.00 0.00 2.29
2690 2844 4.571984 TCTGATTTTCGCTGTGGATGTATG 59.428 41.667 0.00 0.00 0.00 2.39
2712 3038 2.504175 TCCATACCCTGCTACAAAGGAC 59.496 50.000 0.00 0.00 36.91 3.85
2730 3056 9.174166 ACAAAGGACTCACAATATTATTGGTAC 57.826 33.333 18.24 9.09 0.00 3.34
2732 3058 7.356089 AGGACTCACAATATTATTGGTACGA 57.644 36.000 18.24 9.46 0.00 3.43
2860 3187 3.346315 ACATGCATCTCGAAAATGTCCA 58.654 40.909 0.00 1.43 0.00 4.02
2864 3191 3.189080 TGCATCTCGAAAATGTCCACAAG 59.811 43.478 8.71 0.00 0.00 3.16
2873 3200 1.813513 ATGTCCACAAGCTTTCTCCG 58.186 50.000 0.00 0.00 0.00 4.63
2887 3214 0.392461 TCTCCGAAGAAATTGCCCCG 60.392 55.000 0.00 0.00 0.00 5.73
2891 3218 0.447801 CGAAGAAATTGCCCCGAGTG 59.552 55.000 0.00 0.00 0.00 3.51
2908 3235 3.560068 CGAGTGGTTTCTAACTTGCACTT 59.440 43.478 0.00 0.00 33.50 3.16
2919 3246 0.390472 CTTGCACTTCCTCCGTCCTC 60.390 60.000 0.00 0.00 0.00 3.71
2925 3252 1.344763 ACTTCCTCCGTCCTCAAGTTG 59.655 52.381 0.00 0.00 0.00 3.16
2927 3254 0.178944 TCCTCCGTCCTCAAGTTGGA 60.179 55.000 2.34 0.00 0.00 3.53
2951 3278 9.626045 GGAATAAAGTTGAGACACTTATTTTGG 57.374 33.333 0.00 0.00 35.87 3.28
2974 3301 5.068855 GGGACAGAGGGACTACATAACTAAC 59.931 48.000 0.00 0.00 41.55 2.34
2991 3318 6.969993 AACTAACTTTGCACAAATAAGGGA 57.030 33.333 0.00 0.00 0.00 4.20
2992 3319 7.539034 AACTAACTTTGCACAAATAAGGGAT 57.461 32.000 0.00 0.00 0.00 3.85
2993 3320 7.539034 ACTAACTTTGCACAAATAAGGGATT 57.461 32.000 0.00 0.00 0.00 3.01
2994 3321 7.962441 ACTAACTTTGCACAAATAAGGGATTT 58.038 30.769 0.00 0.00 38.34 2.17
3027 3354 5.744171 AGTTTGATGGGGGAAATATTTTGC 58.256 37.500 1.43 0.00 0.00 3.68
3031 3358 4.720773 TGATGGGGGAAATATTTTGCACAT 59.279 37.500 1.43 5.76 0.00 3.21
3053 3380 8.624776 CACATAGGAAAATCTATCCAAAGAACC 58.375 37.037 0.00 0.00 39.55 3.62
3054 3381 8.336235 ACATAGGAAAATCTATCCAAAGAACCA 58.664 33.333 0.00 0.00 39.55 3.67
3059 3386 9.020731 GGAAAATCTATCCAAAGAACCACTTTA 57.979 33.333 0.00 0.00 45.66 1.85
3061 3388 8.581253 AAATCTATCCAAAGAACCACTTTAGG 57.419 34.615 0.00 0.00 45.66 2.69
3125 3457 6.095580 CCTTTTTAGGGGAAGCACTAAAGATC 59.904 42.308 0.00 0.00 39.50 2.75
3132 3464 6.847036 AGGGGAAGCACTAAAGATCTACTAAT 59.153 38.462 0.00 0.00 0.00 1.73
3149 3481 8.922058 TCTACTAATAACGAATCAACCACTTC 57.078 34.615 0.00 0.00 0.00 3.01
3162 3494 1.208614 CACTTCGGCAAGCAAGCTC 59.791 57.895 0.00 0.00 32.09 4.09
3163 3495 1.968540 ACTTCGGCAAGCAAGCTCC 60.969 57.895 0.00 0.00 32.09 4.70
3196 3528 4.205587 AGGAGTCGAACCTGTATACGAAT 58.794 43.478 10.97 0.00 36.30 3.34
3236 3568 8.511604 TTTCATTATTTTGGGAAACAGCAAAA 57.488 26.923 0.00 0.00 36.41 2.44
3237 3569 7.727331 TCATTATTTTGGGAAACAGCAAAAG 57.273 32.000 0.00 0.00 35.77 2.27
3246 3578 5.716228 TGGGAAACAGCAAAAGTATGATCAT 59.284 36.000 13.81 13.81 0.00 2.45
3449 3785 5.931532 AGAACATTTTAAGCACATGACGAG 58.068 37.500 0.00 0.00 0.00 4.18
3490 3826 7.376866 CCATCACATTATTTGAAATACACGCTC 59.623 37.037 0.00 0.00 0.00 5.03
3584 3920 5.776173 AATCAAACACAATGACCCGTTTA 57.224 34.783 0.00 0.00 30.71 2.01
3585 3921 4.822036 TCAAACACAATGACCCGTTTAG 57.178 40.909 0.00 0.00 30.71 1.85
3595 3931 6.603201 ACAATGACCCGTTTAGAATGATGATT 59.397 34.615 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.181530 CGCACAAGATTTACGAGTTCAGG 60.182 47.826 0.00 0.00 0.00 3.86
1 2 3.428870 ACGCACAAGATTTACGAGTTCAG 59.571 43.478 0.00 0.00 0.00 3.02
3 4 4.383649 TGTACGCACAAGATTTACGAGTTC 59.616 41.667 0.00 0.00 0.00 3.01
4 5 4.300803 TGTACGCACAAGATTTACGAGTT 58.699 39.130 0.00 0.00 0.00 3.01
5 6 3.904571 TGTACGCACAAGATTTACGAGT 58.095 40.909 0.00 0.00 0.00 4.18
6 7 4.798907 AGATGTACGCACAAGATTTACGAG 59.201 41.667 0.00 0.00 38.42 4.18
7 8 4.740268 AGATGTACGCACAAGATTTACGA 58.260 39.130 0.00 0.00 38.42 3.43
8 9 5.061684 TGAAGATGTACGCACAAGATTTACG 59.938 40.000 0.00 0.00 38.42 3.18
9 10 6.241385 GTGAAGATGTACGCACAAGATTTAC 58.759 40.000 0.00 0.00 38.42 2.01
10 11 5.350365 GGTGAAGATGTACGCACAAGATTTA 59.650 40.000 0.00 0.00 38.42 1.40
11 12 4.154195 GGTGAAGATGTACGCACAAGATTT 59.846 41.667 0.00 0.00 38.42 2.17
12 13 3.684788 GGTGAAGATGTACGCACAAGATT 59.315 43.478 0.00 0.00 38.42 2.40
13 14 3.262420 GGTGAAGATGTACGCACAAGAT 58.738 45.455 0.00 0.00 38.42 2.40
16 17 2.139917 GTGGTGAAGATGTACGCACAA 58.860 47.619 0.00 0.00 38.42 3.33
17 18 1.069358 TGTGGTGAAGATGTACGCACA 59.931 47.619 0.00 0.00 39.52 4.57
18 19 1.726791 CTGTGGTGAAGATGTACGCAC 59.273 52.381 0.00 0.00 0.00 5.34
19 20 1.939381 GCTGTGGTGAAGATGTACGCA 60.939 52.381 0.00 0.00 0.00 5.24
20 21 0.721718 GCTGTGGTGAAGATGTACGC 59.278 55.000 0.00 0.00 0.00 4.42
21 22 1.995484 CAGCTGTGGTGAAGATGTACG 59.005 52.381 5.25 0.00 32.22 3.67
22 23 3.056536 TCTCAGCTGTGGTGAAGATGTAC 60.057 47.826 14.67 0.00 39.59 2.90
23 24 3.165071 TCTCAGCTGTGGTGAAGATGTA 58.835 45.455 14.67 0.00 39.59 2.29
24 25 1.973515 TCTCAGCTGTGGTGAAGATGT 59.026 47.619 14.67 0.00 39.59 3.06
25 26 2.756840 TCTCAGCTGTGGTGAAGATG 57.243 50.000 14.67 0.00 39.59 2.90
26 27 3.106054 AGATCTCAGCTGTGGTGAAGAT 58.894 45.455 14.67 13.05 39.59 2.40
27 28 2.533916 AGATCTCAGCTGTGGTGAAGA 58.466 47.619 14.67 8.34 39.59 2.87
28 29 3.001414 CAAGATCTCAGCTGTGGTGAAG 58.999 50.000 14.67 2.24 39.59 3.02
29 30 2.873245 GCAAGATCTCAGCTGTGGTGAA 60.873 50.000 14.67 0.00 39.59 3.18
30 31 1.338484 GCAAGATCTCAGCTGTGGTGA 60.338 52.381 14.67 8.58 37.74 4.02
31 32 1.085091 GCAAGATCTCAGCTGTGGTG 58.915 55.000 14.67 9.01 0.00 4.17
32 33 0.035630 GGCAAGATCTCAGCTGTGGT 60.036 55.000 14.67 7.58 0.00 4.16
33 34 0.252479 AGGCAAGATCTCAGCTGTGG 59.748 55.000 14.67 8.31 0.00 4.17
34 35 1.207570 AGAGGCAAGATCTCAGCTGTG 59.792 52.381 14.67 11.96 33.92 3.66
35 36 1.207570 CAGAGGCAAGATCTCAGCTGT 59.792 52.381 14.67 0.00 33.92 4.40
36 37 1.942677 CAGAGGCAAGATCTCAGCTG 58.057 55.000 7.63 7.63 33.92 4.24
37 38 0.178533 GCAGAGGCAAGATCTCAGCT 59.821 55.000 16.75 6.10 39.60 4.24
38 39 2.692817 GCAGAGGCAAGATCTCAGC 58.307 57.895 10.74 10.74 40.72 4.26
49 50 0.106894 GGGTGTAGGTATGCAGAGGC 59.893 60.000 0.00 0.00 41.68 4.70
50 51 0.759346 GGGGTGTAGGTATGCAGAGG 59.241 60.000 0.00 0.00 0.00 3.69
51 52 1.794714 AGGGGTGTAGGTATGCAGAG 58.205 55.000 0.00 0.00 0.00 3.35
52 53 2.263895 AAGGGGTGTAGGTATGCAGA 57.736 50.000 0.00 0.00 0.00 4.26
53 54 2.505819 AGAAAGGGGTGTAGGTATGCAG 59.494 50.000 0.00 0.00 0.00 4.41
54 55 2.557869 AGAAAGGGGTGTAGGTATGCA 58.442 47.619 0.00 0.00 0.00 3.96
55 56 3.710165 AGTAGAAAGGGGTGTAGGTATGC 59.290 47.826 0.00 0.00 0.00 3.14
56 57 4.715297 ACAGTAGAAAGGGGTGTAGGTATG 59.285 45.833 0.00 0.00 0.00 2.39
57 58 4.956582 ACAGTAGAAAGGGGTGTAGGTAT 58.043 43.478 0.00 0.00 0.00 2.73
58 59 4.202706 TGACAGTAGAAAGGGGTGTAGGTA 60.203 45.833 0.00 0.00 0.00 3.08
59 60 3.171528 GACAGTAGAAAGGGGTGTAGGT 58.828 50.000 0.00 0.00 0.00 3.08
60 61 3.170717 TGACAGTAGAAAGGGGTGTAGG 58.829 50.000 0.00 0.00 0.00 3.18
61 62 3.833070 ACTGACAGTAGAAAGGGGTGTAG 59.167 47.826 6.24 0.00 0.00 2.74
62 63 3.830755 GACTGACAGTAGAAAGGGGTGTA 59.169 47.826 8.41 0.00 0.00 2.90
63 64 2.633481 GACTGACAGTAGAAAGGGGTGT 59.367 50.000 8.41 0.00 0.00 4.16
64 65 2.900546 AGACTGACAGTAGAAAGGGGTG 59.099 50.000 8.41 0.00 0.00 4.61
65 66 3.261818 AGACTGACAGTAGAAAGGGGT 57.738 47.619 8.41 0.00 0.00 4.95
66 67 5.017490 TCTAAGACTGACAGTAGAAAGGGG 58.983 45.833 8.41 0.00 0.00 4.79
67 68 6.391537 GTTCTAAGACTGACAGTAGAAAGGG 58.608 44.000 17.07 3.11 35.07 3.95
68 69 6.015350 TGGTTCTAAGACTGACAGTAGAAAGG 60.015 42.308 17.07 4.38 35.07 3.11
69 70 6.864165 GTGGTTCTAAGACTGACAGTAGAAAG 59.136 42.308 17.07 9.57 35.07 2.62
70 71 6.514541 CGTGGTTCTAAGACTGACAGTAGAAA 60.515 42.308 17.07 4.55 35.07 2.52
71 72 5.048921 CGTGGTTCTAAGACTGACAGTAGAA 60.049 44.000 8.41 11.30 31.72 2.10
72 73 4.454847 CGTGGTTCTAAGACTGACAGTAGA 59.545 45.833 8.41 5.24 0.00 2.59
73 74 4.454847 TCGTGGTTCTAAGACTGACAGTAG 59.545 45.833 8.41 2.63 0.00 2.57
74 75 4.214971 GTCGTGGTTCTAAGACTGACAGTA 59.785 45.833 8.41 0.00 0.00 2.74
75 76 3.004524 GTCGTGGTTCTAAGACTGACAGT 59.995 47.826 8.12 8.12 0.00 3.55
76 77 3.004419 TGTCGTGGTTCTAAGACTGACAG 59.996 47.826 0.00 0.00 34.92 3.51
77 78 2.953648 TGTCGTGGTTCTAAGACTGACA 59.046 45.455 4.39 0.00 34.92 3.58
78 79 3.566523 CTGTCGTGGTTCTAAGACTGAC 58.433 50.000 4.39 0.00 35.49 3.51
79 80 2.030185 GCTGTCGTGGTTCTAAGACTGA 60.030 50.000 11.24 0.00 35.49 3.41
80 81 2.329379 GCTGTCGTGGTTCTAAGACTG 58.671 52.381 4.39 4.87 36.22 3.51
81 82 1.068472 CGCTGTCGTGGTTCTAAGACT 60.068 52.381 4.39 0.00 34.92 3.24
82 83 1.337821 CGCTGTCGTGGTTCTAAGAC 58.662 55.000 0.00 0.00 0.00 3.01
83 84 0.242825 CCGCTGTCGTGGTTCTAAGA 59.757 55.000 0.00 0.00 36.03 2.10
84 85 0.736325 CCCGCTGTCGTGGTTCTAAG 60.736 60.000 0.00 0.00 39.22 2.18
85 86 1.290955 CCCGCTGTCGTGGTTCTAA 59.709 57.895 0.00 0.00 39.22 2.10
86 87 2.967397 CCCGCTGTCGTGGTTCTA 59.033 61.111 0.00 0.00 39.22 2.10
87 88 4.681978 GCCCGCTGTCGTGGTTCT 62.682 66.667 0.00 0.00 39.22 3.01
101 102 3.611674 CAACAACAACCCCCGCCC 61.612 66.667 0.00 0.00 0.00 6.13
102 103 3.611674 CCAACAACAACCCCCGCC 61.612 66.667 0.00 0.00 0.00 6.13
103 104 1.906333 ATCCAACAACAACCCCCGC 60.906 57.895 0.00 0.00 0.00 6.13
104 105 0.538516 TCATCCAACAACAACCCCCG 60.539 55.000 0.00 0.00 0.00 5.73
105 106 1.256812 CTCATCCAACAACAACCCCC 58.743 55.000 0.00 0.00 0.00 5.40
106 107 1.256812 CCTCATCCAACAACAACCCC 58.743 55.000 0.00 0.00 0.00 4.95
107 108 1.256812 CCCTCATCCAACAACAACCC 58.743 55.000 0.00 0.00 0.00 4.11
108 109 1.203001 TCCCCTCATCCAACAACAACC 60.203 52.381 0.00 0.00 0.00 3.77
109 110 2.162681 CTCCCCTCATCCAACAACAAC 58.837 52.381 0.00 0.00 0.00 3.32
110 111 1.075374 CCTCCCCTCATCCAACAACAA 59.925 52.381 0.00 0.00 0.00 2.83
111 112 0.698238 CCTCCCCTCATCCAACAACA 59.302 55.000 0.00 0.00 0.00 3.33
112 113 0.681243 GCCTCCCCTCATCCAACAAC 60.681 60.000 0.00 0.00 0.00 3.32
113 114 1.691219 GCCTCCCCTCATCCAACAA 59.309 57.895 0.00 0.00 0.00 2.83
114 115 2.308722 GGCCTCCCCTCATCCAACA 61.309 63.158 0.00 0.00 0.00 3.33
115 116 1.863155 TTGGCCTCCCCTCATCCAAC 61.863 60.000 3.32 0.00 32.42 3.77
116 117 0.925720 ATTGGCCTCCCCTCATCCAA 60.926 55.000 3.32 0.00 40.59 3.53
117 118 1.309013 ATTGGCCTCCCCTCATCCA 60.309 57.895 3.32 0.00 0.00 3.41
118 119 1.152368 CATTGGCCTCCCCTCATCC 59.848 63.158 3.32 0.00 0.00 3.51
119 120 0.466922 CACATTGGCCTCCCCTCATC 60.467 60.000 3.32 0.00 0.00 2.92
120 121 1.616921 CACATTGGCCTCCCCTCAT 59.383 57.895 3.32 0.00 0.00 2.90
121 122 3.089838 CACATTGGCCTCCCCTCA 58.910 61.111 3.32 0.00 0.00 3.86
122 123 2.440980 GCACATTGGCCTCCCCTC 60.441 66.667 3.32 0.00 0.00 4.30
130 131 3.747976 GGTCGGTGGCACATTGGC 61.748 66.667 20.82 9.83 44.52 4.52
131 132 2.282110 TGGTCGGTGGCACATTGG 60.282 61.111 20.82 5.45 44.52 3.16
132 133 2.981560 GCTGGTCGGTGGCACATTG 61.982 63.158 20.82 8.68 44.52 2.82
133 134 2.672996 GCTGGTCGGTGGCACATT 60.673 61.111 20.82 0.00 44.52 2.71
142 143 4.504916 CTCTGGCTCGCTGGTCGG 62.505 72.222 0.00 0.00 39.05 4.79
143 144 4.504916 CCTCTGGCTCGCTGGTCG 62.505 72.222 0.00 0.00 40.15 4.79
144 145 2.570582 CTTCCTCTGGCTCGCTGGTC 62.571 65.000 0.00 0.00 0.00 4.02
145 146 2.604686 TTCCTCTGGCTCGCTGGT 60.605 61.111 0.00 0.00 0.00 4.00
146 147 1.892819 TTCTTCCTCTGGCTCGCTGG 61.893 60.000 0.00 0.00 0.00 4.85
147 148 0.459934 CTTCTTCCTCTGGCTCGCTG 60.460 60.000 0.00 0.00 0.00 5.18
148 149 0.613292 TCTTCTTCCTCTGGCTCGCT 60.613 55.000 0.00 0.00 0.00 4.93
149 150 0.247736 TTCTTCTTCCTCTGGCTCGC 59.752 55.000 0.00 0.00 0.00 5.03
150 151 1.134848 CCTTCTTCTTCCTCTGGCTCG 60.135 57.143 0.00 0.00 0.00 5.03
151 152 1.406751 GCCTTCTTCTTCCTCTGGCTC 60.407 57.143 0.00 0.00 36.32 4.70
152 153 0.617935 GCCTTCTTCTTCCTCTGGCT 59.382 55.000 0.00 0.00 36.32 4.75
153 154 0.326264 TGCCTTCTTCTTCCTCTGGC 59.674 55.000 0.00 0.00 39.33 4.85
154 155 2.709213 CTTGCCTTCTTCTTCCTCTGG 58.291 52.381 0.00 0.00 0.00 3.86
155 156 2.083002 GCTTGCCTTCTTCTTCCTCTG 58.917 52.381 0.00 0.00 0.00 3.35
156 157 1.338579 CGCTTGCCTTCTTCTTCCTCT 60.339 52.381 0.00 0.00 0.00 3.69
157 158 1.082690 CGCTTGCCTTCTTCTTCCTC 58.917 55.000 0.00 0.00 0.00 3.71
158 159 0.398318 ACGCTTGCCTTCTTCTTCCT 59.602 50.000 0.00 0.00 0.00 3.36
159 160 0.519077 CACGCTTGCCTTCTTCTTCC 59.481 55.000 0.00 0.00 0.00 3.46
160 161 0.110010 GCACGCTTGCCTTCTTCTTC 60.110 55.000 3.29 0.00 43.66 2.87
161 162 1.952263 GCACGCTTGCCTTCTTCTT 59.048 52.632 3.29 0.00 43.66 2.52
162 163 3.660621 GCACGCTTGCCTTCTTCT 58.339 55.556 3.29 0.00 43.66 2.85
171 172 4.354212 CGGTCACGTGCACGCTTG 62.354 66.667 37.35 28.22 44.43 4.01
200 201 4.204891 GTCGGATTTGCGTCGGCG 62.205 66.667 4.29 4.29 44.10 6.46
201 202 1.079875 TTAGTCGGATTTGCGTCGGC 61.080 55.000 0.00 0.00 40.52 5.54
202 203 1.352114 TTTAGTCGGATTTGCGTCGG 58.648 50.000 0.00 0.00 0.00 4.79
203 204 3.443054 TTTTTAGTCGGATTTGCGTCG 57.557 42.857 0.00 0.00 0.00 5.12
220 221 3.262915 TGATCCATTTTCGGCCCATTTTT 59.737 39.130 0.00 0.00 0.00 1.94
221 222 2.836981 TGATCCATTTTCGGCCCATTTT 59.163 40.909 0.00 0.00 0.00 1.82
222 223 2.168313 GTGATCCATTTTCGGCCCATTT 59.832 45.455 0.00 0.00 0.00 2.32
223 224 1.756538 GTGATCCATTTTCGGCCCATT 59.243 47.619 0.00 0.00 0.00 3.16
224 225 1.402787 GTGATCCATTTTCGGCCCAT 58.597 50.000 0.00 0.00 0.00 4.00
225 226 0.682855 GGTGATCCATTTTCGGCCCA 60.683 55.000 0.00 0.00 0.00 5.36
226 227 1.391933 GGGTGATCCATTTTCGGCCC 61.392 60.000 0.00 0.00 35.00 5.80
227 228 1.724582 CGGGTGATCCATTTTCGGCC 61.725 60.000 0.00 0.00 34.36 6.13
228 229 1.727467 CGGGTGATCCATTTTCGGC 59.273 57.895 0.00 0.00 34.36 5.54
229 230 1.029408 TGCGGGTGATCCATTTTCGG 61.029 55.000 0.00 0.00 34.36 4.30
230 231 0.378257 CTGCGGGTGATCCATTTTCG 59.622 55.000 0.00 0.00 34.36 3.46
231 232 1.401905 GTCTGCGGGTGATCCATTTTC 59.598 52.381 0.00 0.00 34.36 2.29
232 233 1.463674 GTCTGCGGGTGATCCATTTT 58.536 50.000 0.00 0.00 34.36 1.82
233 234 0.744414 CGTCTGCGGGTGATCCATTT 60.744 55.000 0.00 0.00 34.36 2.32
234 235 1.153369 CGTCTGCGGGTGATCCATT 60.153 57.895 0.00 0.00 34.36 3.16
235 236 1.613317 TTCGTCTGCGGGTGATCCAT 61.613 55.000 0.00 0.00 38.89 3.41
236 237 1.822114 TTTCGTCTGCGGGTGATCCA 61.822 55.000 0.00 0.00 38.89 3.41
237 238 0.672401 TTTTCGTCTGCGGGTGATCC 60.672 55.000 0.00 0.00 38.89 3.36
238 239 0.442699 GTTTTCGTCTGCGGGTGATC 59.557 55.000 0.00 0.00 38.89 2.92
239 240 0.953960 GGTTTTCGTCTGCGGGTGAT 60.954 55.000 0.00 0.00 38.89 3.06
240 241 1.595929 GGTTTTCGTCTGCGGGTGA 60.596 57.895 0.00 0.00 38.89 4.02
241 242 2.943653 GGTTTTCGTCTGCGGGTG 59.056 61.111 0.00 0.00 38.89 4.61
242 243 2.663852 CGGTTTTCGTCTGCGGGT 60.664 61.111 0.00 0.00 38.89 5.28
243 244 3.419759 CCGGTTTTCGTCTGCGGG 61.420 66.667 0.00 0.00 38.89 6.13
244 245 1.740296 ATCCGGTTTTCGTCTGCGG 60.740 57.895 0.00 0.00 38.89 5.69
245 246 1.419922 CATCCGGTTTTCGTCTGCG 59.580 57.895 0.00 0.00 37.11 5.18
246 247 1.134694 GCATCCGGTTTTCGTCTGC 59.865 57.895 0.00 0.00 37.27 4.26
247 248 1.794222 GGCATCCGGTTTTCGTCTG 59.206 57.895 0.00 0.00 37.11 3.51
248 249 1.740296 CGGCATCCGGTTTTCGTCT 60.740 57.895 0.00 0.00 44.15 4.18
249 250 2.782615 CGGCATCCGGTTTTCGTC 59.217 61.111 0.00 0.00 44.15 4.20
259 260 3.486263 CCGACTCAAACGGCATCC 58.514 61.111 0.00 0.00 43.74 3.51
265 266 1.509787 CAATGCGCCGACTCAAACG 60.510 57.895 4.18 0.00 0.00 3.60
266 267 1.154225 CCAATGCGCCGACTCAAAC 60.154 57.895 4.18 0.00 0.00 2.93
267 268 1.302112 TCCAATGCGCCGACTCAAA 60.302 52.632 4.18 0.00 0.00 2.69
268 269 2.032634 GTCCAATGCGCCGACTCAA 61.033 57.895 4.18 0.00 0.00 3.02
269 270 2.434185 GTCCAATGCGCCGACTCA 60.434 61.111 4.18 0.00 0.00 3.41
270 271 3.195698 GGTCCAATGCGCCGACTC 61.196 66.667 4.18 0.00 0.00 3.36
276 277 3.281359 AAAAGGCGGTCCAATGCGC 62.281 57.895 0.00 0.00 33.74 6.09
277 278 1.444212 CAAAAGGCGGTCCAATGCG 60.444 57.895 0.00 0.00 33.74 4.73
278 279 0.667184 CACAAAAGGCGGTCCAATGC 60.667 55.000 0.00 0.00 33.74 3.56
279 280 0.673437 ACACAAAAGGCGGTCCAATG 59.327 50.000 0.00 0.00 33.74 2.82
280 281 0.958822 GACACAAAAGGCGGTCCAAT 59.041 50.000 0.00 0.00 33.74 3.16
281 282 2.410466 GACACAAAAGGCGGTCCAA 58.590 52.632 0.00 0.00 33.74 3.53
282 283 4.150994 GACACAAAAGGCGGTCCA 57.849 55.556 0.00 0.00 33.74 4.02
283 284 2.613506 CGGACACAAAAGGCGGTCC 61.614 63.158 0.00 0.00 44.97 4.46
284 285 2.943653 CGGACACAAAAGGCGGTC 59.056 61.111 0.00 0.00 0.00 4.79
285 286 3.284449 GCGGACACAAAAGGCGGT 61.284 61.111 0.00 0.00 0.00 5.68
286 287 4.383602 CGCGGACACAAAAGGCGG 62.384 66.667 0.00 0.00 42.86 6.13
288 289 4.700365 GGCGCGGACACAAAAGGC 62.700 66.667 8.83 0.00 0.00 4.35
289 290 4.383602 CGGCGCGGACACAAAAGG 62.384 66.667 9.72 0.00 0.00 3.11
290 291 2.182614 AATCGGCGCGGACACAAAAG 62.183 55.000 20.65 0.00 0.00 2.27
291 292 2.177654 GAATCGGCGCGGACACAAAA 62.178 55.000 20.65 0.00 0.00 2.44
292 293 2.666862 AATCGGCGCGGACACAAA 60.667 55.556 20.65 0.00 0.00 2.83
293 294 3.115892 GAATCGGCGCGGACACAA 61.116 61.111 20.65 0.00 0.00 3.33
294 295 3.867700 TTGAATCGGCGCGGACACA 62.868 57.895 20.65 18.58 0.00 3.72
295 296 2.673114 TTTGAATCGGCGCGGACAC 61.673 57.895 20.65 16.34 0.00 3.67
296 297 2.357638 TTTGAATCGGCGCGGACA 60.358 55.556 20.65 11.80 0.00 4.02
297 298 2.097728 GTTTGAATCGGCGCGGAC 59.902 61.111 20.65 9.15 0.00 4.79
298 299 3.483665 CGTTTGAATCGGCGCGGA 61.484 61.111 20.50 20.50 0.00 5.54
299 300 4.514569 CCGTTTGAATCGGCGCGG 62.515 66.667 8.83 8.94 41.48 6.46
300 301 3.483665 TCCGTTTGAATCGGCGCG 61.484 61.111 9.70 0.00 46.49 6.86
301 302 2.097728 GTCCGTTTGAATCGGCGC 59.902 61.111 9.70 0.00 46.49 6.53
302 303 2.394136 CGTCCGTTTGAATCGGCG 59.606 61.111 9.70 12.06 46.49 6.46
303 304 2.782615 CCGTCCGTTTGAATCGGC 59.217 61.111 9.70 4.78 46.49 5.54
305 306 2.089936 TCGCCGTCCGTTTGAATCG 61.090 57.895 0.00 0.00 38.35 3.34
306 307 1.418755 GTCGCCGTCCGTTTGAATC 59.581 57.895 0.00 0.00 38.35 2.52
307 308 2.377310 CGTCGCCGTCCGTTTGAAT 61.377 57.895 0.00 0.00 38.35 2.57
308 309 3.031457 CGTCGCCGTCCGTTTGAA 61.031 61.111 0.00 0.00 38.35 2.69
315 316 3.976902 ATTTCGTCCGTCGCCGTCC 62.977 63.158 3.08 0.00 39.67 4.79
316 317 2.502965 GATTTCGTCCGTCGCCGTC 61.503 63.158 3.08 0.00 39.67 4.79
317 318 2.505557 GATTTCGTCCGTCGCCGT 60.506 61.111 3.08 0.00 39.67 5.68
318 319 2.202570 AGATTTCGTCCGTCGCCG 60.203 61.111 0.00 0.00 39.67 6.46
319 320 1.411493 GACAGATTTCGTCCGTCGCC 61.411 60.000 0.00 0.00 39.67 5.54
320 321 1.730593 CGACAGATTTCGTCCGTCGC 61.731 60.000 0.00 0.00 46.87 5.19
322 323 1.411493 GGCGACAGATTTCGTCCGTC 61.411 60.000 0.00 0.00 41.26 4.79
323 324 1.445582 GGCGACAGATTTCGTCCGT 60.446 57.895 0.00 0.00 41.26 4.69
324 325 3.384927 GGCGACAGATTTCGTCCG 58.615 61.111 0.00 0.00 41.26 4.79
326 327 1.128692 CAAAGGGCGACAGATTTCGTC 59.871 52.381 0.00 0.00 43.02 4.20
327 328 1.156736 CAAAGGGCGACAGATTTCGT 58.843 50.000 0.00 0.00 41.26 3.85
328 329 1.438651 TCAAAGGGCGACAGATTTCG 58.561 50.000 0.00 0.00 42.15 3.46
329 330 2.814336 ACTTCAAAGGGCGACAGATTTC 59.186 45.455 0.00 0.00 0.00 2.17
330 331 2.863809 ACTTCAAAGGGCGACAGATTT 58.136 42.857 0.00 0.00 0.00 2.17
331 332 2.554032 CAACTTCAAAGGGCGACAGATT 59.446 45.455 0.00 0.00 0.00 2.40
332 333 2.154462 CAACTTCAAAGGGCGACAGAT 58.846 47.619 0.00 0.00 0.00 2.90
333 334 1.593196 CAACTTCAAAGGGCGACAGA 58.407 50.000 0.00 0.00 0.00 3.41
334 335 0.040067 GCAACTTCAAAGGGCGACAG 60.040 55.000 0.00 0.00 0.00 3.51
335 336 0.465460 AGCAACTTCAAAGGGCGACA 60.465 50.000 0.00 0.00 36.13 4.35
336 337 0.238553 GAGCAACTTCAAAGGGCGAC 59.761 55.000 0.00 0.00 36.13 5.19
337 338 0.108585 AGAGCAACTTCAAAGGGCGA 59.891 50.000 0.00 0.00 36.13 5.54
338 339 0.954452 AAGAGCAACTTCAAAGGGCG 59.046 50.000 0.00 0.00 36.13 6.13
339 340 1.683385 ACAAGAGCAACTTCAAAGGGC 59.317 47.619 0.00 0.00 36.61 5.19
340 341 2.689983 ACACAAGAGCAACTTCAAAGGG 59.310 45.455 0.00 0.00 36.61 3.95
341 342 3.243201 GGACACAAGAGCAACTTCAAAGG 60.243 47.826 0.00 0.00 36.61 3.11
342 343 3.629398 AGGACACAAGAGCAACTTCAAAG 59.371 43.478 0.00 0.00 36.61 2.77
343 344 3.620488 AGGACACAAGAGCAACTTCAAA 58.380 40.909 0.00 0.00 36.61 2.69
344 345 3.118261 AGAGGACACAAGAGCAACTTCAA 60.118 43.478 0.00 0.00 36.61 2.69
345 346 2.435805 AGAGGACACAAGAGCAACTTCA 59.564 45.455 0.00 0.00 36.61 3.02
346 347 3.118905 AGAGGACACAAGAGCAACTTC 57.881 47.619 0.00 0.00 36.61 3.01
347 348 3.118261 TCAAGAGGACACAAGAGCAACTT 60.118 43.478 0.00 0.00 39.70 2.66
348 349 2.435805 TCAAGAGGACACAAGAGCAACT 59.564 45.455 0.00 0.00 0.00 3.16
349 350 2.838736 TCAAGAGGACACAAGAGCAAC 58.161 47.619 0.00 0.00 0.00 4.17
350 351 3.118261 ACTTCAAGAGGACACAAGAGCAA 60.118 43.478 0.00 0.00 0.00 3.91
351 352 2.435805 ACTTCAAGAGGACACAAGAGCA 59.564 45.455 0.00 0.00 0.00 4.26
352 353 2.805099 CACTTCAAGAGGACACAAGAGC 59.195 50.000 0.00 0.00 0.00 4.09
353 354 2.805099 GCACTTCAAGAGGACACAAGAG 59.195 50.000 0.00 0.00 0.00 2.85
354 355 2.170397 TGCACTTCAAGAGGACACAAGA 59.830 45.455 0.00 0.00 0.00 3.02
355 356 2.564771 TGCACTTCAAGAGGACACAAG 58.435 47.619 0.00 0.00 0.00 3.16
356 357 2.708216 TGCACTTCAAGAGGACACAA 57.292 45.000 0.00 0.00 0.00 3.33
357 358 2.497138 CATGCACTTCAAGAGGACACA 58.503 47.619 0.00 0.00 0.00 3.72
358 359 1.198637 GCATGCACTTCAAGAGGACAC 59.801 52.381 14.21 0.00 0.00 3.67
359 360 1.527034 GCATGCACTTCAAGAGGACA 58.473 50.000 14.21 0.00 0.00 4.02
360 361 0.445436 CGCATGCACTTCAAGAGGAC 59.555 55.000 19.57 0.00 0.00 3.85
361 362 0.674581 CCGCATGCACTTCAAGAGGA 60.675 55.000 19.57 0.00 35.73 3.71
362 363 1.798735 CCGCATGCACTTCAAGAGG 59.201 57.895 19.57 3.09 0.00 3.69
433 442 3.496337 GGCCAAGCTAGTCCCCTTTATAC 60.496 52.174 0.00 0.00 0.00 1.47
437 446 1.691823 GGCCAAGCTAGTCCCCTTT 59.308 57.895 0.00 0.00 0.00 3.11
438 447 2.309504 GGGCCAAGCTAGTCCCCTT 61.310 63.158 4.39 0.00 32.60 3.95
517 528 0.997932 GCAGCGAATCTGAGTGACAG 59.002 55.000 0.00 0.00 45.72 3.51
518 529 0.390340 GGCAGCGAATCTGAGTGACA 60.390 55.000 0.00 0.00 45.72 3.58
519 530 0.108424 AGGCAGCGAATCTGAGTGAC 60.108 55.000 0.00 0.00 45.72 3.67
520 531 0.174389 GAGGCAGCGAATCTGAGTGA 59.826 55.000 0.00 0.00 45.72 3.41
521 532 0.108472 TGAGGCAGCGAATCTGAGTG 60.108 55.000 0.00 0.00 45.72 3.51
522 533 0.610174 TTGAGGCAGCGAATCTGAGT 59.390 50.000 0.00 0.00 45.72 3.41
547 558 3.181399 TCTTACTTCCTTCCTTCTCCCCA 60.181 47.826 0.00 0.00 0.00 4.96
575 588 4.810345 TGTTTTTGAAATCTGGGGTAGGT 58.190 39.130 0.00 0.00 0.00 3.08
576 589 5.783111 CTTGTTTTTGAAATCTGGGGTAGG 58.217 41.667 0.00 0.00 0.00 3.18
584 597 4.507756 GCGGAAAGCTTGTTTTTGAAATCT 59.492 37.500 0.00 0.00 44.04 2.40
589 602 1.133407 ACGCGGAAAGCTTGTTTTTGA 59.867 42.857 12.47 0.00 45.59 2.69
626 639 5.273170 CGCATCGAAATGGAATGTTTATGT 58.727 37.500 0.00 0.00 33.19 2.29
627 640 4.146961 GCGCATCGAAATGGAATGTTTATG 59.853 41.667 0.30 0.00 33.19 1.90
628 641 4.290155 GCGCATCGAAATGGAATGTTTAT 58.710 39.130 0.30 0.00 33.19 1.40
629 642 3.690422 GCGCATCGAAATGGAATGTTTA 58.310 40.909 0.30 0.00 33.19 2.01
709 728 0.392706 GGGTTTGTTGCCCTTTCCTG 59.607 55.000 0.00 0.00 42.81 3.86
713 732 3.252554 TCTATGGGTTTGTTGCCCTTT 57.747 42.857 1.85 0.00 46.22 3.11
725 745 4.747931 GCATTAGCAGTGGAATCTATGGGT 60.748 45.833 0.00 0.00 41.58 4.51
726 746 3.755378 GCATTAGCAGTGGAATCTATGGG 59.245 47.826 0.00 0.00 41.58 4.00
727 747 4.649692 AGCATTAGCAGTGGAATCTATGG 58.350 43.478 0.00 0.00 45.49 2.74
728 748 7.117523 GTCTTAGCATTAGCAGTGGAATCTATG 59.882 40.741 0.00 0.00 45.49 2.23
729 749 7.158021 GTCTTAGCATTAGCAGTGGAATCTAT 58.842 38.462 0.00 0.00 45.49 1.98
730 750 6.516718 GTCTTAGCATTAGCAGTGGAATCTA 58.483 40.000 0.00 0.00 45.49 1.98
731 751 5.363939 GTCTTAGCATTAGCAGTGGAATCT 58.636 41.667 0.00 0.00 45.49 2.40
732 752 4.210120 CGTCTTAGCATTAGCAGTGGAATC 59.790 45.833 0.00 0.00 45.49 2.52
733 753 4.122776 CGTCTTAGCATTAGCAGTGGAAT 58.877 43.478 0.00 0.00 45.49 3.01
734 754 3.194755 TCGTCTTAGCATTAGCAGTGGAA 59.805 43.478 0.00 0.00 45.49 3.53
735 755 2.758423 TCGTCTTAGCATTAGCAGTGGA 59.242 45.455 0.00 0.00 45.49 4.02
755 795 2.099062 CAGGCGTTTGCAGCGATC 59.901 61.111 15.36 7.43 45.35 3.69
756 796 3.434319 CCAGGCGTTTGCAGCGAT 61.434 61.111 15.36 1.94 45.35 4.58
757 797 3.899981 ATCCAGGCGTTTGCAGCGA 62.900 57.895 15.36 0.00 45.35 4.93
758 798 3.386867 GATCCAGGCGTTTGCAGCG 62.387 63.158 8.16 8.16 45.35 5.18
759 799 2.334946 TGATCCAGGCGTTTGCAGC 61.335 57.895 0.00 0.00 45.35 5.25
760 800 1.503542 GTGATCCAGGCGTTTGCAG 59.496 57.895 0.00 0.00 45.35 4.41
761 801 2.324330 CGTGATCCAGGCGTTTGCA 61.324 57.895 0.00 0.00 45.35 4.08
762 802 1.573829 TTCGTGATCCAGGCGTTTGC 61.574 55.000 0.00 0.00 41.71 3.68
763 803 1.062587 GATTCGTGATCCAGGCGTTTG 59.937 52.381 0.00 0.00 0.00 2.93
764 804 1.369625 GATTCGTGATCCAGGCGTTT 58.630 50.000 0.00 0.00 0.00 3.60
765 805 3.065575 GATTCGTGATCCAGGCGTT 57.934 52.632 0.00 0.00 0.00 4.84
766 806 4.835927 GATTCGTGATCCAGGCGT 57.164 55.556 0.00 0.00 0.00 5.68
812 878 1.676635 CAGGGGAGGTGTGCATGTG 60.677 63.158 0.00 0.00 0.00 3.21
813 879 1.847506 TCAGGGGAGGTGTGCATGT 60.848 57.895 0.00 0.00 0.00 3.21
814 880 1.377725 GTCAGGGGAGGTGTGCATG 60.378 63.158 0.00 0.00 0.00 4.06
815 881 2.606587 GGTCAGGGGAGGTGTGCAT 61.607 63.158 0.00 0.00 0.00 3.96
816 882 3.249189 GGTCAGGGGAGGTGTGCA 61.249 66.667 0.00 0.00 0.00 4.57
866 932 2.003301 GGAGAAGGCTCGTGAATGAAC 58.997 52.381 0.00 0.00 42.25 3.18
871 937 1.585006 GACGGAGAAGGCTCGTGAA 59.415 57.895 3.55 0.00 42.25 3.18
881 954 1.065273 GCGGATTAGCGACGGAGAA 59.935 57.895 0.00 0.00 0.00 2.87
882 955 2.719979 GCGGATTAGCGACGGAGA 59.280 61.111 0.00 0.00 0.00 3.71
972 1059 3.459969 ACACAGAGAAGGAAAGGGAAAGT 59.540 43.478 0.00 0.00 0.00 2.66
991 1078 1.467734 CAAGAGCAGCATCTTCCACAC 59.532 52.381 0.00 0.00 37.43 3.82
992 1079 1.072806 ACAAGAGCAGCATCTTCCACA 59.927 47.619 0.00 0.00 37.43 4.17
993 1080 1.467734 CACAAGAGCAGCATCTTCCAC 59.532 52.381 0.00 0.00 37.43 4.02
994 1081 1.817357 CACAAGAGCAGCATCTTCCA 58.183 50.000 0.00 0.00 37.43 3.53
995 1082 0.450983 GCACAAGAGCAGCATCTTCC 59.549 55.000 0.00 0.00 37.43 3.46
1179 1277 1.219935 CTTGTACCCGGTGTAGGCC 59.780 63.158 0.00 0.00 0.00 5.19
1307 1405 6.247165 CAGTTTATGTACAGTGACGTACGTAC 59.753 42.308 22.87 18.34 43.89 3.67
1485 1612 2.282251 ACGAGCGACTCCCACTGA 60.282 61.111 0.00 0.00 0.00 3.41
1602 1733 0.741915 TGGTATCGAGCGCATGTACA 59.258 50.000 11.47 0.00 0.00 2.90
1603 1734 1.721389 CATGGTATCGAGCGCATGTAC 59.279 52.381 11.47 6.94 0.00 2.90
1608 1739 1.067416 GTCCATGGTATCGAGCGCA 59.933 57.895 11.47 0.00 0.00 6.09
1619 1750 6.764308 ACAAGAAGAATAACATGTCCATGG 57.236 37.500 4.97 4.97 42.91 3.66
1620 1751 7.031372 CCAACAAGAAGAATAACATGTCCATG 58.969 38.462 0.00 5.74 44.15 3.66
1621 1752 6.153340 CCCAACAAGAAGAATAACATGTCCAT 59.847 38.462 0.00 0.00 0.00 3.41
1622 1753 5.476599 CCCAACAAGAAGAATAACATGTCCA 59.523 40.000 0.00 0.00 0.00 4.02
1623 1754 5.622233 GCCCAACAAGAAGAATAACATGTCC 60.622 44.000 0.00 0.00 0.00 4.02
1624 1755 5.048083 TGCCCAACAAGAAGAATAACATGTC 60.048 40.000 0.00 0.00 0.00 3.06
1625 1756 4.832266 TGCCCAACAAGAAGAATAACATGT 59.168 37.500 0.00 0.00 0.00 3.21
1626 1757 5.389859 TGCCCAACAAGAAGAATAACATG 57.610 39.130 0.00 0.00 0.00 3.21
1627 1758 6.418057 TTTGCCCAACAAGAAGAATAACAT 57.582 33.333 0.00 0.00 40.06 2.71
1628 1759 5.860941 TTTGCCCAACAAGAAGAATAACA 57.139 34.783 0.00 0.00 40.06 2.41
1629 1760 6.147656 CCAATTTGCCCAACAAGAAGAATAAC 59.852 38.462 0.00 0.00 40.06 1.89
1630 1761 6.229733 CCAATTTGCCCAACAAGAAGAATAA 58.770 36.000 0.00 0.00 40.06 1.40
1631 1762 5.792741 CCAATTTGCCCAACAAGAAGAATA 58.207 37.500 0.00 0.00 40.06 1.75
1632 1763 4.644498 CCAATTTGCCCAACAAGAAGAAT 58.356 39.130 0.00 0.00 40.06 2.40
1647 1779 1.286354 CCGCTGCAGTTGCCAATTTG 61.286 55.000 16.64 0.00 41.18 2.32
1650 1782 2.598394 ACCGCTGCAGTTGCCAAT 60.598 55.556 16.64 0.00 41.18 3.16
1655 1787 2.263077 CTAGTAAGACCGCTGCAGTTG 58.737 52.381 16.64 9.31 0.00 3.16
1656 1788 1.893801 ACTAGTAAGACCGCTGCAGTT 59.106 47.619 16.64 3.51 0.00 3.16
1657 1789 1.546961 ACTAGTAAGACCGCTGCAGT 58.453 50.000 16.64 0.00 0.00 4.40
1658 1790 2.683867 ACTACTAGTAAGACCGCTGCAG 59.316 50.000 10.11 10.11 0.00 4.41
1659 1791 2.719739 ACTACTAGTAAGACCGCTGCA 58.280 47.619 3.76 0.00 0.00 4.41
1660 1792 4.889832 TTACTACTAGTAAGACCGCTGC 57.110 45.455 3.76 0.00 35.89 5.25
1661 1793 6.262720 AGGAATTACTACTAGTAAGACCGCTG 59.737 42.308 13.02 0.00 43.17 5.18
1662 1794 6.363882 AGGAATTACTACTAGTAAGACCGCT 58.636 40.000 13.02 3.79 43.17 5.52
1663 1795 6.631971 AGGAATTACTACTAGTAAGACCGC 57.368 41.667 13.02 2.86 43.17 5.68
1674 1806 9.962783 GTACATGTCGAATTAGGAATTACTACT 57.037 33.333 0.00 0.00 0.00 2.57
1675 1807 9.189723 GGTACATGTCGAATTAGGAATTACTAC 57.810 37.037 0.00 0.00 0.00 2.73
1677 1809 6.921857 CGGTACATGTCGAATTAGGAATTACT 59.078 38.462 0.00 0.00 0.00 2.24
1678 1810 6.145048 CCGGTACATGTCGAATTAGGAATTAC 59.855 42.308 0.00 0.00 0.00 1.89
1679 1811 6.218019 CCGGTACATGTCGAATTAGGAATTA 58.782 40.000 0.00 0.00 0.00 1.40
1680 1812 5.054477 CCGGTACATGTCGAATTAGGAATT 58.946 41.667 0.00 0.00 0.00 2.17
1681 1813 4.628074 CCGGTACATGTCGAATTAGGAAT 58.372 43.478 0.00 0.00 0.00 3.01
1682 1814 3.738899 GCCGGTACATGTCGAATTAGGAA 60.739 47.826 0.00 0.00 0.00 3.36
1683 1815 2.223876 GCCGGTACATGTCGAATTAGGA 60.224 50.000 0.00 0.00 0.00 2.94
1684 1816 2.132762 GCCGGTACATGTCGAATTAGG 58.867 52.381 0.00 0.00 0.00 2.69
1685 1817 2.132762 GGCCGGTACATGTCGAATTAG 58.867 52.381 0.00 0.00 0.00 1.73
1686 1818 1.536496 CGGCCGGTACATGTCGAATTA 60.536 52.381 20.10 0.00 29.14 1.40
1687 1819 0.808453 CGGCCGGTACATGTCGAATT 60.808 55.000 20.10 0.00 29.14 2.17
1688 1820 1.227147 CGGCCGGTACATGTCGAAT 60.227 57.895 20.10 0.00 29.14 3.34
1689 1821 2.182284 CGGCCGGTACATGTCGAA 59.818 61.111 20.10 0.00 29.14 3.71
1690 1822 3.829044 CCGGCCGGTACATGTCGA 61.829 66.667 36.64 0.00 29.14 4.20
1830 1962 3.858868 GAAGGACAGCACGTCGGCA 62.859 63.158 8.15 0.00 46.42 5.69
1842 1974 1.671379 GTGGCCGGAGTTGAAGGAC 60.671 63.158 5.05 0.00 0.00 3.85
1931 2063 0.237498 GCTTGTGCACTCGGTAAACC 59.763 55.000 19.41 0.00 39.41 3.27
2012 2161 1.346062 CCATCCGATCCATGTCCTCT 58.654 55.000 0.00 0.00 0.00 3.69
2226 2380 7.642071 AGAAAGTCGCGTTATAAAACTGTAA 57.358 32.000 5.77 0.00 33.15 2.41
2231 2385 6.515340 CAGACAAGAAAGTCGCGTTATAAAAC 59.485 38.462 5.77 0.00 43.24 2.43
2232 2386 6.347079 CCAGACAAGAAAGTCGCGTTATAAAA 60.347 38.462 5.77 0.00 43.24 1.52
2233 2387 5.119588 CCAGACAAGAAAGTCGCGTTATAAA 59.880 40.000 5.77 0.00 43.24 1.40
2236 2390 2.993899 CCAGACAAGAAAGTCGCGTTAT 59.006 45.455 5.77 0.00 43.24 1.89
2249 2403 2.037136 CGAGCCCAAGCCAGACAAG 61.037 63.158 0.00 0.00 41.25 3.16
2294 2448 1.000955 CCGTAGCAGTTCTTGGACACT 59.999 52.381 0.00 0.00 0.00 3.55
2394 2548 1.379843 GGACCGGGCATTTCATGGT 60.380 57.895 11.00 0.00 35.14 3.55
2395 2549 2.480610 CGGACCGGGCATTTCATGG 61.481 63.158 11.00 0.00 0.00 3.66
2600 2754 0.670546 CAGCAACAGTCCAGTACGGG 60.671 60.000 5.57 5.57 34.36 5.28
2664 2818 2.358957 TCCACAGCGAAAATCAGATGG 58.641 47.619 0.00 0.00 0.00 3.51
2666 2820 3.614092 ACATCCACAGCGAAAATCAGAT 58.386 40.909 0.00 0.00 0.00 2.90
2688 2842 3.117888 CCTTTGTAGCAGGGTATGGACAT 60.118 47.826 0.00 0.00 0.00 3.06
2690 2844 2.504175 TCCTTTGTAGCAGGGTATGGAC 59.496 50.000 0.00 0.00 31.50 4.02
2873 3200 0.811281 CCACTCGGGGCAATTTCTTC 59.189 55.000 0.00 0.00 0.00 2.87
2887 3214 4.023963 GGAAGTGCAAGTTAGAAACCACTC 60.024 45.833 0.00 0.00 32.61 3.51
2891 3218 3.502595 GGAGGAAGTGCAAGTTAGAAACC 59.497 47.826 0.00 0.00 0.00 3.27
2908 3235 0.178944 TCCAACTTGAGGACGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
2919 3246 7.264373 AGTGTCTCAACTTTATTCCAACTTG 57.736 36.000 0.00 0.00 0.00 3.16
2925 3252 9.626045 CCAAAATAAGTGTCTCAACTTTATTCC 57.374 33.333 0.00 0.00 40.77 3.01
2927 3254 9.362151 TCCCAAAATAAGTGTCTCAACTTTATT 57.638 29.630 0.00 0.00 40.77 1.40
2951 3278 5.892686 AGTTAGTTATGTAGTCCCTCTGTCC 59.107 44.000 0.00 0.00 0.00 4.02
2991 3318 6.239572 CCCCCATCAAACTTTGACTAACAAAT 60.240 38.462 6.35 0.00 45.63 2.32
2992 3319 5.069781 CCCCCATCAAACTTTGACTAACAAA 59.930 40.000 6.35 0.00 43.48 2.83
2993 3320 4.586841 CCCCCATCAAACTTTGACTAACAA 59.413 41.667 6.35 0.00 43.48 2.83
2994 3321 4.141135 TCCCCCATCAAACTTTGACTAACA 60.141 41.667 6.35 0.00 43.48 2.41
2995 3322 4.403734 TCCCCCATCAAACTTTGACTAAC 58.596 43.478 6.35 0.00 43.48 2.34
2996 3323 4.733077 TCCCCCATCAAACTTTGACTAA 57.267 40.909 6.35 0.00 43.48 2.24
2997 3324 4.733077 TTCCCCCATCAAACTTTGACTA 57.267 40.909 6.35 0.00 43.48 2.59
3005 3332 5.353956 GTGCAAAATATTTCCCCCATCAAAC 59.646 40.000 0.10 0.00 0.00 2.93
3011 3338 4.653341 CCTATGTGCAAAATATTTCCCCCA 59.347 41.667 0.10 0.00 0.00 4.96
3027 3354 8.624776 GGTTCTTTGGATAGATTTTCCTATGTG 58.375 37.037 0.00 0.00 34.17 3.21
3031 3358 7.928873 AGTGGTTCTTTGGATAGATTTTCCTA 58.071 34.615 0.00 0.00 34.17 2.94
3087 3414 8.407313 TCCCCTAAAAAGGAGATCTTTAGATT 57.593 34.615 11.20 2.21 44.30 2.40
3089 3416 7.583612 GCTTCCCCTAAAAAGGAGATCTTTAGA 60.584 40.741 11.20 0.00 44.30 2.10
3099 3426 5.073965 TCTTTAGTGCTTCCCCTAAAAAGGA 59.926 40.000 0.00 0.00 33.91 3.36
3106 3433 5.778542 AGTAGATCTTTAGTGCTTCCCCTA 58.221 41.667 0.00 0.00 0.00 3.53
3125 3457 7.043590 CCGAAGTGGTTGATTCGTTATTAGTAG 60.044 40.741 6.58 0.00 45.17 2.57
3132 3464 2.070783 GCCGAAGTGGTTGATTCGTTA 58.929 47.619 6.58 0.00 45.17 3.18
3149 3481 1.799258 AAACTGGAGCTTGCTTGCCG 61.799 55.000 0.00 0.00 0.00 5.69
3162 3494 1.419374 CGACTCCTTCGTCAAACTGG 58.581 55.000 0.00 0.00 43.24 4.00
3208 3540 9.784531 TTGCTGTTTCCCAAAATAATGAAAATA 57.215 25.926 0.00 0.00 0.00 1.40
3320 3654 8.966868 TGGTCATTTTAGTTCTTTTCTTTCAGT 58.033 29.630 0.00 0.00 0.00 3.41
3321 3655 9.801873 TTGGTCATTTTAGTTCTTTTCTTTCAG 57.198 29.630 0.00 0.00 0.00 3.02
3375 3709 8.971073 CATGTATTTTAAGAATGTTCTTCCCCT 58.029 33.333 11.02 0.11 43.72 4.79
3376 3710 8.197439 CCATGTATTTTAAGAATGTTCTTCCCC 58.803 37.037 11.02 0.00 43.72 4.81
3449 3785 5.049398 TGTGATGGGTGTATTTAAAACGC 57.951 39.130 0.00 0.00 0.00 4.84
3490 3826 8.336806 ACATTCAACATGCATTTAAAAGTTGTG 58.663 29.630 19.07 14.98 37.97 3.33
3558 3894 5.525199 ACGGGTCATTGTGTTTGATTAAAC 58.475 37.500 6.16 6.16 45.04 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.