Multiple sequence alignment - TraesCS4B01G193800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G193800 chr4B 100.000 3062 0 0 1 3062 416633727 416630666 0.000000e+00 5655
1 TraesCS4B01G193800 chr4B 75.621 644 151 6 852 1492 90754901 90755541 6.370000e-82 315
2 TraesCS4B01G193800 chr4B 95.172 145 6 1 273 416 129713014 129713158 8.540000e-56 228
3 TraesCS4B01G193800 chr2A 96.308 2627 96 1 436 3062 561019423 561016798 0.000000e+00 4313
4 TraesCS4B01G193800 chr2A 95.814 2628 105 2 436 3059 385302064 385304690 0.000000e+00 4239
5 TraesCS4B01G193800 chr2A 95.804 143 5 1 275 416 723523029 723523171 2.370000e-56 230
6 TraesCS4B01G193800 chr5B 93.113 1118 76 1 896 2013 454385168 454386284 0.000000e+00 1637
7 TraesCS4B01G193800 chr5B 90.791 923 73 8 2061 2983 454386285 454387195 0.000000e+00 1223
8 TraesCS4B01G193800 chr5B 76.487 706 160 6 851 1552 46723753 46724456 2.230000e-101 379
9 TraesCS4B01G193800 chr7D 85.910 1022 143 1 2005 3025 476781791 476780770 0.000000e+00 1088
10 TraesCS4B01G193800 chr7D 74.512 1075 210 45 427 1466 529764673 529765718 2.840000e-110 409
11 TraesCS4B01G193800 chr7B 75.803 1058 239 16 2011 3061 591584138 591585185 1.260000e-143 520
12 TraesCS4B01G193800 chr7B 73.558 1040 252 16 1981 3010 423759938 423760964 2.880000e-100 375
13 TraesCS4B01G193800 chr7B 92.857 154 8 3 265 416 163507769 163507921 1.430000e-53 220
14 TraesCS4B01G193800 chr3D 75.390 1089 250 16 1966 3045 46195675 46194596 7.570000e-141 510
15 TraesCS4B01G193800 chr1A 74.649 1069 238 25 1957 3010 253038476 253039526 2.800000e-120 442
16 TraesCS4B01G193800 chr1A 76.747 787 169 14 818 1597 280478870 280479649 7.850000e-116 427
17 TraesCS4B01G193800 chr4D 94.636 261 9 3 1 258 337474944 337474686 1.710000e-107 399
18 TraesCS4B01G193800 chr5D 73.754 1063 249 28 1962 3009 349364538 349363491 1.030000e-104 390
19 TraesCS4B01G193800 chr1B 75.195 641 153 6 855 1492 22578246 22577609 6.420000e-77 298
20 TraesCS4B01G193800 chr1B 74.727 641 156 6 855 1492 22451781 22451144 6.460000e-72 281
21 TraesCS4B01G193800 chr7A 72.111 1047 262 28 1979 3010 85357677 85358708 3.860000e-74 289
22 TraesCS4B01G193800 chr4A 85.714 266 14 9 6 258 134546485 134546739 3.030000e-65 259
23 TraesCS4B01G193800 chr3B 96.503 143 4 1 275 416 810264732 810264874 5.100000e-58 235
24 TraesCS4B01G193800 chr3B 95.833 144 5 1 274 416 659778600 659778743 6.600000e-57 231
25 TraesCS4B01G193800 chr3B 93.506 154 9 1 264 416 715005772 715005925 8.540000e-56 228
26 TraesCS4B01G193800 chr6B 93.548 155 7 3 270 421 547006236 547006082 8.540000e-56 228
27 TraesCS4B01G193800 chr5A 94.079 152 6 3 274 422 36129112 36128961 8.540000e-56 228
28 TraesCS4B01G193800 chr5A 94.079 152 6 3 274 422 36162730 36162579 8.540000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G193800 chr4B 416630666 416633727 3061 True 5655 5655 100.000 1 3062 1 chr4B.!!$R1 3061
1 TraesCS4B01G193800 chr4B 90754901 90755541 640 False 315 315 75.621 852 1492 1 chr4B.!!$F1 640
2 TraesCS4B01G193800 chr2A 561016798 561019423 2625 True 4313 4313 96.308 436 3062 1 chr2A.!!$R1 2626
3 TraesCS4B01G193800 chr2A 385302064 385304690 2626 False 4239 4239 95.814 436 3059 1 chr2A.!!$F1 2623
4 TraesCS4B01G193800 chr5B 454385168 454387195 2027 False 1430 1637 91.952 896 2983 2 chr5B.!!$F2 2087
5 TraesCS4B01G193800 chr5B 46723753 46724456 703 False 379 379 76.487 851 1552 1 chr5B.!!$F1 701
6 TraesCS4B01G193800 chr7D 476780770 476781791 1021 True 1088 1088 85.910 2005 3025 1 chr7D.!!$R1 1020
7 TraesCS4B01G193800 chr7D 529764673 529765718 1045 False 409 409 74.512 427 1466 1 chr7D.!!$F1 1039
8 TraesCS4B01G193800 chr7B 591584138 591585185 1047 False 520 520 75.803 2011 3061 1 chr7B.!!$F3 1050
9 TraesCS4B01G193800 chr7B 423759938 423760964 1026 False 375 375 73.558 1981 3010 1 chr7B.!!$F2 1029
10 TraesCS4B01G193800 chr3D 46194596 46195675 1079 True 510 510 75.390 1966 3045 1 chr3D.!!$R1 1079
11 TraesCS4B01G193800 chr1A 253038476 253039526 1050 False 442 442 74.649 1957 3010 1 chr1A.!!$F1 1053
12 TraesCS4B01G193800 chr1A 280478870 280479649 779 False 427 427 76.747 818 1597 1 chr1A.!!$F2 779
13 TraesCS4B01G193800 chr5D 349363491 349364538 1047 True 390 390 73.754 1962 3009 1 chr5D.!!$R1 1047
14 TraesCS4B01G193800 chr1B 22577609 22578246 637 True 298 298 75.195 855 1492 1 chr1B.!!$R2 637
15 TraesCS4B01G193800 chr1B 22451144 22451781 637 True 281 281 74.727 855 1492 1 chr1B.!!$R1 637
16 TraesCS4B01G193800 chr7A 85357677 85358708 1031 False 289 289 72.111 1979 3010 1 chr7A.!!$F1 1031

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.033504 GTCCTGACCACGCAGAAAGA 59.966 55.0 0.00 0.0 38.14 2.52 F
1409 1426 0.034186 TCGGCCAAGCTCAAATCCAT 60.034 50.0 2.24 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 1918 1.379044 AGGGCCAGCACATTAGCAC 60.379 57.895 6.18 0.0 36.85 4.40 R
2293 2310 0.179124 TTTGTTGGCCGCTTTCACAC 60.179 50.000 0.00 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.590487 GCAGGTAGCGTACAAGCA 57.410 55.556 0.00 0.00 40.15 3.91
30 31 2.079049 GCAGGTAGCGTACAAGCAC 58.921 57.895 0.00 0.00 40.15 4.40
31 32 0.669318 GCAGGTAGCGTACAAGCACA 60.669 55.000 0.00 0.00 40.15 4.57
32 33 1.790755 CAGGTAGCGTACAAGCACAA 58.209 50.000 0.00 0.00 40.15 3.33
33 34 1.459592 CAGGTAGCGTACAAGCACAAC 59.540 52.381 0.00 0.00 40.15 3.32
34 35 1.069513 AGGTAGCGTACAAGCACAACA 59.930 47.619 0.00 0.00 40.15 3.33
35 36 1.459592 GGTAGCGTACAAGCACAACAG 59.540 52.381 0.00 0.00 40.15 3.16
36 37 2.400399 GTAGCGTACAAGCACAACAGA 58.600 47.619 0.00 0.00 40.15 3.41
37 38 1.502231 AGCGTACAAGCACAACAGAG 58.498 50.000 0.00 0.00 40.15 3.35
38 39 0.512952 GCGTACAAGCACAACAGAGG 59.487 55.000 0.00 0.00 37.05 3.69
39 40 0.512952 CGTACAAGCACAACAGAGGC 59.487 55.000 0.00 0.00 0.00 4.70
40 41 0.875059 GTACAAGCACAACAGAGGCC 59.125 55.000 0.00 0.00 0.00 5.19
41 42 0.472044 TACAAGCACAACAGAGGCCA 59.528 50.000 5.01 0.00 0.00 5.36
42 43 0.820891 ACAAGCACAACAGAGGCCAG 60.821 55.000 5.01 0.00 0.00 4.85
43 44 0.535780 CAAGCACAACAGAGGCCAGA 60.536 55.000 5.01 0.00 0.00 3.86
44 45 0.183492 AAGCACAACAGAGGCCAGAA 59.817 50.000 5.01 0.00 0.00 3.02
45 46 0.250640 AGCACAACAGAGGCCAGAAG 60.251 55.000 5.01 0.00 0.00 2.85
46 47 1.239968 GCACAACAGAGGCCAGAAGG 61.240 60.000 5.01 0.00 38.23 3.46
47 48 0.607489 CACAACAGAGGCCAGAAGGG 60.607 60.000 5.01 0.00 40.85 3.95
48 49 0.768221 ACAACAGAGGCCAGAAGGGA 60.768 55.000 5.01 0.00 40.01 4.20
49 50 0.622665 CAACAGAGGCCAGAAGGGAT 59.377 55.000 5.01 0.00 40.01 3.85
50 51 0.915364 AACAGAGGCCAGAAGGGATC 59.085 55.000 5.01 0.00 40.01 3.36
51 52 1.333636 ACAGAGGCCAGAAGGGATCG 61.334 60.000 5.01 0.00 40.01 3.69
52 53 1.045350 CAGAGGCCAGAAGGGATCGA 61.045 60.000 5.01 0.00 40.01 3.59
53 54 0.325671 AGAGGCCAGAAGGGATCGAA 60.326 55.000 5.01 0.00 40.01 3.71
54 55 0.105778 GAGGCCAGAAGGGATCGAAG 59.894 60.000 5.01 0.00 40.01 3.79
55 56 1.147153 GGCCAGAAGGGATCGAAGG 59.853 63.158 0.00 0.00 40.01 3.46
56 57 1.338136 GGCCAGAAGGGATCGAAGGA 61.338 60.000 0.00 0.00 40.01 3.36
57 58 0.761802 GCCAGAAGGGATCGAAGGAT 59.238 55.000 0.00 0.00 40.01 3.24
58 59 1.542108 GCCAGAAGGGATCGAAGGATG 60.542 57.143 0.00 0.00 40.01 3.51
59 60 1.765314 CCAGAAGGGATCGAAGGATGT 59.235 52.381 0.00 0.00 40.01 3.06
60 61 2.484417 CCAGAAGGGATCGAAGGATGTG 60.484 54.545 0.00 0.00 40.01 3.21
61 62 2.432146 CAGAAGGGATCGAAGGATGTGA 59.568 50.000 0.00 0.00 31.51 3.58
62 63 3.107601 AGAAGGGATCGAAGGATGTGAA 58.892 45.455 0.00 0.00 31.51 3.18
63 64 3.519510 AGAAGGGATCGAAGGATGTGAAA 59.480 43.478 0.00 0.00 31.51 2.69
64 65 4.019321 AGAAGGGATCGAAGGATGTGAAAA 60.019 41.667 0.00 0.00 31.51 2.29
65 66 3.610911 AGGGATCGAAGGATGTGAAAAC 58.389 45.455 0.00 0.00 31.51 2.43
66 67 3.264450 AGGGATCGAAGGATGTGAAAACT 59.736 43.478 0.00 0.00 31.51 2.66
67 68 3.375299 GGGATCGAAGGATGTGAAAACTG 59.625 47.826 0.00 0.00 31.51 3.16
68 69 3.375299 GGATCGAAGGATGTGAAAACTGG 59.625 47.826 0.00 0.00 31.51 4.00
69 70 3.762407 TCGAAGGATGTGAAAACTGGA 57.238 42.857 0.00 0.00 0.00 3.86
70 71 3.664107 TCGAAGGATGTGAAAACTGGAG 58.336 45.455 0.00 0.00 0.00 3.86
71 72 2.160417 CGAAGGATGTGAAAACTGGAGC 59.840 50.000 0.00 0.00 0.00 4.70
72 73 2.957402 AGGATGTGAAAACTGGAGCA 57.043 45.000 0.00 0.00 0.00 4.26
73 74 2.787994 AGGATGTGAAAACTGGAGCAG 58.212 47.619 0.00 0.00 37.52 4.24
75 76 2.227388 GGATGTGAAAACTGGAGCAGTG 59.773 50.000 0.00 0.00 44.62 3.66
76 77 2.708216 TGTGAAAACTGGAGCAGTGA 57.292 45.000 0.00 0.00 44.62 3.41
77 78 3.213206 TGTGAAAACTGGAGCAGTGAT 57.787 42.857 0.00 0.00 44.62 3.06
78 79 4.350368 TGTGAAAACTGGAGCAGTGATA 57.650 40.909 0.00 0.00 44.62 2.15
79 80 4.910195 TGTGAAAACTGGAGCAGTGATAT 58.090 39.130 0.00 0.00 44.62 1.63
80 81 4.937620 TGTGAAAACTGGAGCAGTGATATC 59.062 41.667 0.00 0.00 44.62 1.63
81 82 5.181748 GTGAAAACTGGAGCAGTGATATCT 58.818 41.667 3.98 0.00 44.62 1.98
82 83 5.645497 GTGAAAACTGGAGCAGTGATATCTT 59.355 40.000 3.98 0.00 44.62 2.40
83 84 5.877012 TGAAAACTGGAGCAGTGATATCTTC 59.123 40.000 3.98 0.00 44.62 2.87
84 85 4.414337 AACTGGAGCAGTGATATCTTCC 57.586 45.455 3.98 4.47 44.62 3.46
85 86 3.652055 ACTGGAGCAGTGATATCTTCCT 58.348 45.455 3.98 0.00 43.63 3.36
86 87 4.809193 ACTGGAGCAGTGATATCTTCCTA 58.191 43.478 3.98 0.00 43.63 2.94
87 88 4.586841 ACTGGAGCAGTGATATCTTCCTAC 59.413 45.833 3.98 0.00 43.63 3.18
88 89 3.570125 TGGAGCAGTGATATCTTCCTACG 59.430 47.826 3.98 0.00 0.00 3.51
89 90 3.570550 GGAGCAGTGATATCTTCCTACGT 59.429 47.826 3.98 0.00 0.00 3.57
90 91 4.038162 GGAGCAGTGATATCTTCCTACGTT 59.962 45.833 3.98 0.00 0.00 3.99
91 92 5.241064 GGAGCAGTGATATCTTCCTACGTTA 59.759 44.000 3.98 0.00 0.00 3.18
92 93 6.074544 AGCAGTGATATCTTCCTACGTTAC 57.925 41.667 3.98 0.00 0.00 2.50
93 94 5.593095 AGCAGTGATATCTTCCTACGTTACA 59.407 40.000 3.98 0.00 0.00 2.41
94 95 6.096423 AGCAGTGATATCTTCCTACGTTACAA 59.904 38.462 3.98 0.00 0.00 2.41
95 96 6.418226 GCAGTGATATCTTCCTACGTTACAAG 59.582 42.308 3.98 0.00 0.00 3.16
96 97 7.481642 CAGTGATATCTTCCTACGTTACAAGT 58.518 38.462 3.98 0.00 0.00 3.16
97 98 7.974501 CAGTGATATCTTCCTACGTTACAAGTT 59.025 37.037 3.98 0.00 0.00 2.66
98 99 7.974501 AGTGATATCTTCCTACGTTACAAGTTG 59.025 37.037 3.98 0.00 0.00 3.16
99 100 7.758528 GTGATATCTTCCTACGTTACAAGTTGT 59.241 37.037 14.05 14.05 0.00 3.32
100 101 7.758076 TGATATCTTCCTACGTTACAAGTTGTG 59.242 37.037 18.90 4.54 0.00 3.33
101 102 4.053295 TCTTCCTACGTTACAAGTTGTGC 58.947 43.478 18.90 10.09 0.00 4.57
102 103 2.396601 TCCTACGTTACAAGTTGTGCG 58.603 47.619 23.74 23.74 36.60 5.34
103 104 1.458064 CCTACGTTACAAGTTGTGCGG 59.542 52.381 26.69 15.80 35.51 5.69
104 105 1.458064 CTACGTTACAAGTTGTGCGGG 59.542 52.381 26.69 18.95 35.51 6.13
105 106 1.082366 CGTTACAAGTTGTGCGGGC 60.082 57.895 18.90 3.41 0.00 6.13
106 107 1.503818 CGTTACAAGTTGTGCGGGCT 61.504 55.000 18.90 0.00 0.00 5.19
107 108 0.040425 GTTACAAGTTGTGCGGGCTG 60.040 55.000 18.90 0.00 0.00 4.85
108 109 0.179043 TTACAAGTTGTGCGGGCTGA 60.179 50.000 18.90 0.00 0.00 4.26
109 110 0.036164 TACAAGTTGTGCGGGCTGAT 59.964 50.000 18.90 0.00 0.00 2.90
110 111 0.823356 ACAAGTTGTGCGGGCTGATT 60.823 50.000 7.96 0.00 0.00 2.57
111 112 0.387622 CAAGTTGTGCGGGCTGATTG 60.388 55.000 0.00 0.00 0.00 2.67
112 113 0.537143 AAGTTGTGCGGGCTGATTGA 60.537 50.000 0.00 0.00 0.00 2.57
113 114 0.537143 AGTTGTGCGGGCTGATTGAA 60.537 50.000 0.00 0.00 0.00 2.69
114 115 0.527565 GTTGTGCGGGCTGATTGAAT 59.472 50.000 0.00 0.00 0.00 2.57
115 116 0.810648 TTGTGCGGGCTGATTGAATC 59.189 50.000 0.00 0.00 0.00 2.52
116 117 0.322366 TGTGCGGGCTGATTGAATCA 60.322 50.000 7.73 7.73 37.76 2.57
117 118 1.027357 GTGCGGGCTGATTGAATCAT 58.973 50.000 8.50 0.00 38.85 2.45
118 119 1.026584 TGCGGGCTGATTGAATCATG 58.973 50.000 8.50 4.53 38.85 3.07
119 120 0.313043 GCGGGCTGATTGAATCATGG 59.687 55.000 8.50 0.00 38.85 3.66
120 121 0.313043 CGGGCTGATTGAATCATGGC 59.687 55.000 8.50 13.76 38.85 4.40
121 122 1.405872 GGGCTGATTGAATCATGGCA 58.594 50.000 22.32 0.00 38.85 4.92
122 123 1.968493 GGGCTGATTGAATCATGGCAT 59.032 47.619 22.32 0.00 38.85 4.40
123 124 2.367567 GGGCTGATTGAATCATGGCATT 59.632 45.455 22.32 0.00 38.85 3.56
124 125 3.181458 GGGCTGATTGAATCATGGCATTT 60.181 43.478 22.32 0.00 38.85 2.32
125 126 4.056050 GGCTGATTGAATCATGGCATTTC 58.944 43.478 17.53 0.51 38.85 2.17
126 127 4.442332 GGCTGATTGAATCATGGCATTTCA 60.442 41.667 17.53 9.89 38.85 2.69
127 128 5.297547 GCTGATTGAATCATGGCATTTCAT 58.702 37.500 13.72 6.15 38.85 2.57
128 129 6.452242 GCTGATTGAATCATGGCATTTCATA 58.548 36.000 13.72 7.13 38.85 2.15
129 130 7.097192 GCTGATTGAATCATGGCATTTCATAT 58.903 34.615 13.72 10.54 38.85 1.78
130 131 7.275779 GCTGATTGAATCATGGCATTTCATATC 59.724 37.037 13.72 16.48 38.85 1.63
131 132 8.417273 TGATTGAATCATGGCATTTCATATCT 57.583 30.769 21.41 9.91 33.59 1.98
132 133 8.303876 TGATTGAATCATGGCATTTCATATCTG 58.696 33.333 21.41 5.94 33.59 2.90
133 134 6.584185 TGAATCATGGCATTTCATATCTGG 57.416 37.500 9.89 0.00 0.00 3.86
134 135 6.072649 TGAATCATGGCATTTCATATCTGGT 58.927 36.000 9.89 0.00 0.00 4.00
135 136 5.977489 ATCATGGCATTTCATATCTGGTG 57.023 39.130 0.00 0.00 0.00 4.17
136 137 3.570975 TCATGGCATTTCATATCTGGTGC 59.429 43.478 0.00 0.00 0.00 5.01
137 138 3.301794 TGGCATTTCATATCTGGTGCT 57.698 42.857 0.00 0.00 33.38 4.40
138 139 3.634504 TGGCATTTCATATCTGGTGCTT 58.365 40.909 0.00 0.00 33.38 3.91
139 140 3.633525 TGGCATTTCATATCTGGTGCTTC 59.366 43.478 0.00 0.00 33.38 3.86
140 141 3.887716 GGCATTTCATATCTGGTGCTTCT 59.112 43.478 0.00 0.00 33.38 2.85
141 142 4.340381 GGCATTTCATATCTGGTGCTTCTT 59.660 41.667 0.00 0.00 33.38 2.52
142 143 5.163478 GGCATTTCATATCTGGTGCTTCTTT 60.163 40.000 0.00 0.00 33.38 2.52
143 144 5.747197 GCATTTCATATCTGGTGCTTCTTTG 59.253 40.000 0.00 0.00 0.00 2.77
144 145 4.970662 TTCATATCTGGTGCTTCTTTGC 57.029 40.909 0.00 0.00 0.00 3.68
145 146 4.226427 TCATATCTGGTGCTTCTTTGCT 57.774 40.909 0.00 0.00 0.00 3.91
146 147 3.943381 TCATATCTGGTGCTTCTTTGCTG 59.057 43.478 0.00 0.00 0.00 4.41
147 148 1.542492 ATCTGGTGCTTCTTTGCTGG 58.458 50.000 0.00 0.00 0.00 4.85
148 149 0.538057 TCTGGTGCTTCTTTGCTGGG 60.538 55.000 0.00 0.00 0.00 4.45
149 150 2.151049 CTGGTGCTTCTTTGCTGGGC 62.151 60.000 0.00 0.00 0.00 5.36
150 151 2.256461 GTGCTTCTTTGCTGGGCG 59.744 61.111 0.00 0.00 0.00 6.13
151 152 2.203337 TGCTTCTTTGCTGGGCGT 60.203 55.556 0.00 0.00 0.00 5.68
152 153 2.260869 TGCTTCTTTGCTGGGCGTC 61.261 57.895 0.00 0.00 0.00 5.19
153 154 2.982744 GCTTCTTTGCTGGGCGTCC 61.983 63.158 0.00 0.00 0.00 4.79
154 155 1.302832 CTTCTTTGCTGGGCGTCCT 60.303 57.895 7.97 0.00 0.00 3.85
155 156 1.580845 CTTCTTTGCTGGGCGTCCTG 61.581 60.000 7.97 8.44 35.38 3.86
156 157 2.032528 CTTTGCTGGGCGTCCTGA 59.967 61.111 18.08 0.00 34.32 3.86
157 158 2.281484 TTTGCTGGGCGTCCTGAC 60.281 61.111 18.08 8.65 34.32 3.51
166 167 2.338620 CGTCCTGACCACGCAGAA 59.661 61.111 0.00 0.00 38.14 3.02
167 168 1.300620 CGTCCTGACCACGCAGAAA 60.301 57.895 0.00 0.00 38.14 2.52
168 169 1.284982 CGTCCTGACCACGCAGAAAG 61.285 60.000 0.00 0.00 38.14 2.62
169 170 0.033504 GTCCTGACCACGCAGAAAGA 59.966 55.000 0.00 0.00 38.14 2.52
170 171 0.756294 TCCTGACCACGCAGAAAGAA 59.244 50.000 0.00 0.00 38.14 2.52
171 172 1.140052 TCCTGACCACGCAGAAAGAAA 59.860 47.619 0.00 0.00 38.14 2.52
172 173 1.532868 CCTGACCACGCAGAAAGAAAG 59.467 52.381 0.00 0.00 38.14 2.62
173 174 2.483876 CTGACCACGCAGAAAGAAAGA 58.516 47.619 0.00 0.00 38.14 2.52
174 175 2.872245 CTGACCACGCAGAAAGAAAGAA 59.128 45.455 0.00 0.00 38.14 2.52
175 176 3.275143 TGACCACGCAGAAAGAAAGAAA 58.725 40.909 0.00 0.00 0.00 2.52
176 177 3.312421 TGACCACGCAGAAAGAAAGAAAG 59.688 43.478 0.00 0.00 0.00 2.62
177 178 3.541632 ACCACGCAGAAAGAAAGAAAGA 58.458 40.909 0.00 0.00 0.00 2.52
178 179 3.945285 ACCACGCAGAAAGAAAGAAAGAA 59.055 39.130 0.00 0.00 0.00 2.52
179 180 4.580580 ACCACGCAGAAAGAAAGAAAGAAT 59.419 37.500 0.00 0.00 0.00 2.40
180 181 5.149977 CCACGCAGAAAGAAAGAAAGAATC 58.850 41.667 0.00 0.00 0.00 2.52
181 182 5.277974 CCACGCAGAAAGAAAGAAAGAATCA 60.278 40.000 0.00 0.00 0.00 2.57
182 183 6.376978 CACGCAGAAAGAAAGAAAGAATCAT 58.623 36.000 0.00 0.00 0.00 2.45
183 184 7.361201 CCACGCAGAAAGAAAGAAAGAATCATA 60.361 37.037 0.00 0.00 0.00 2.15
184 185 7.691463 CACGCAGAAAGAAAGAAAGAATCATAG 59.309 37.037 0.00 0.00 0.00 2.23
185 186 6.686253 CGCAGAAAGAAAGAAAGAATCATAGC 59.314 38.462 0.00 0.00 0.00 2.97
186 187 7.533426 GCAGAAAGAAAGAAAGAATCATAGCA 58.467 34.615 0.00 0.00 0.00 3.49
187 188 7.697291 GCAGAAAGAAAGAAAGAATCATAGCAG 59.303 37.037 0.00 0.00 0.00 4.24
188 189 8.944029 CAGAAAGAAAGAAAGAATCATAGCAGA 58.056 33.333 0.00 0.00 0.00 4.26
189 190 9.683870 AGAAAGAAAGAAAGAATCATAGCAGAT 57.316 29.630 0.00 0.00 0.00 2.90
190 191 9.934190 GAAAGAAAGAAAGAATCATAGCAGATC 57.066 33.333 0.00 0.00 0.00 2.75
191 192 9.683870 AAAGAAAGAAAGAATCATAGCAGATCT 57.316 29.630 0.00 0.00 0.00 2.75
192 193 9.683870 AAGAAAGAAAGAATCATAGCAGATCTT 57.316 29.630 0.00 0.00 0.00 2.40
196 197 9.723601 AAGAAAGAATCATAGCAGATCTTATCC 57.276 33.333 0.00 0.00 0.00 2.59
197 198 9.103582 AGAAAGAATCATAGCAGATCTTATCCT 57.896 33.333 0.00 0.00 0.00 3.24
200 201 7.995289 AGAATCATAGCAGATCTTATCCTACG 58.005 38.462 0.00 0.00 0.00 3.51
201 202 5.568685 TCATAGCAGATCTTATCCTACGC 57.431 43.478 0.00 0.00 0.00 4.42
202 203 4.399618 TCATAGCAGATCTTATCCTACGCC 59.600 45.833 0.00 0.00 0.00 5.68
203 204 1.896465 AGCAGATCTTATCCTACGCCC 59.104 52.381 0.00 0.00 0.00 6.13
204 205 1.402984 GCAGATCTTATCCTACGCCCG 60.403 57.143 0.00 0.00 0.00 6.13
205 206 0.889306 AGATCTTATCCTACGCCCGC 59.111 55.000 0.00 0.00 0.00 6.13
206 207 0.601558 GATCTTATCCTACGCCCGCA 59.398 55.000 0.00 0.00 0.00 5.69
207 208 1.204941 GATCTTATCCTACGCCCGCAT 59.795 52.381 0.00 0.00 0.00 4.73
208 209 1.913778 TCTTATCCTACGCCCGCATA 58.086 50.000 0.00 0.00 0.00 3.14
209 210 1.542915 TCTTATCCTACGCCCGCATAC 59.457 52.381 0.00 0.00 0.00 2.39
210 211 0.241749 TTATCCTACGCCCGCATACG 59.758 55.000 0.00 0.00 39.67 3.06
231 232 3.680842 ACGCGAGTATGGGGAATTC 57.319 52.632 15.93 0.00 46.88 2.17
232 233 0.828022 ACGCGAGTATGGGGAATTCA 59.172 50.000 15.93 0.00 46.88 2.57
233 234 1.208535 ACGCGAGTATGGGGAATTCAA 59.791 47.619 15.93 0.00 46.88 2.69
234 235 1.867233 CGCGAGTATGGGGAATTCAAG 59.133 52.381 0.00 0.00 0.00 3.02
235 236 2.741878 CGCGAGTATGGGGAATTCAAGT 60.742 50.000 0.00 0.00 0.00 3.16
236 237 3.279434 GCGAGTATGGGGAATTCAAGTT 58.721 45.455 7.93 0.00 0.00 2.66
237 238 3.065371 GCGAGTATGGGGAATTCAAGTTG 59.935 47.826 7.93 0.00 0.00 3.16
238 239 4.513442 CGAGTATGGGGAATTCAAGTTGA 58.487 43.478 7.93 0.08 0.00 3.18
239 240 5.126067 CGAGTATGGGGAATTCAAGTTGAT 58.874 41.667 6.36 0.00 0.00 2.57
240 241 5.008019 CGAGTATGGGGAATTCAAGTTGATG 59.992 44.000 6.36 0.00 0.00 3.07
241 242 5.203528 AGTATGGGGAATTCAAGTTGATGG 58.796 41.667 6.36 0.00 0.00 3.51
242 243 2.178580 TGGGGAATTCAAGTTGATGGC 58.821 47.619 6.36 0.00 0.00 4.40
243 244 2.178580 GGGGAATTCAAGTTGATGGCA 58.821 47.619 6.36 0.00 0.00 4.92
244 245 2.767960 GGGGAATTCAAGTTGATGGCAT 59.232 45.455 6.36 0.00 0.00 4.40
245 246 3.181472 GGGGAATTCAAGTTGATGGCATC 60.181 47.826 20.52 20.52 0.00 3.91
246 247 3.448301 GGGAATTCAAGTTGATGGCATCA 59.552 43.478 25.63 25.63 37.55 3.07
247 248 4.441079 GGGAATTCAAGTTGATGGCATCAG 60.441 45.833 27.39 17.33 40.94 2.90
248 249 3.795623 ATTCAAGTTGATGGCATCAGC 57.204 42.857 29.94 29.94 40.94 4.26
249 250 2.203470 TCAAGTTGATGGCATCAGCA 57.797 45.000 35.34 19.79 42.18 4.41
250 251 2.089201 TCAAGTTGATGGCATCAGCAG 58.911 47.619 35.34 28.28 42.18 4.24
251 252 0.815734 AAGTTGATGGCATCAGCAGC 59.184 50.000 35.34 23.42 42.18 5.25
252 253 0.034380 AGTTGATGGCATCAGCAGCT 60.034 50.000 35.34 24.81 44.03 4.24
253 254 1.211212 AGTTGATGGCATCAGCAGCTA 59.789 47.619 35.34 17.81 46.26 3.32
254 255 2.019249 GTTGATGGCATCAGCAGCTAA 58.981 47.619 31.41 14.27 40.62 3.09
255 256 2.423446 TGATGGCATCAGCAGCTAAA 57.577 45.000 25.63 0.00 44.61 1.85
256 257 2.019249 TGATGGCATCAGCAGCTAAAC 58.981 47.619 25.63 0.00 44.61 2.01
257 258 1.336125 GATGGCATCAGCAGCTAAACC 59.664 52.381 22.23 0.00 44.61 3.27
258 259 0.329261 TGGCATCAGCAGCTAAACCT 59.671 50.000 0.00 0.00 44.61 3.50
259 260 1.559219 TGGCATCAGCAGCTAAACCTA 59.441 47.619 0.00 0.00 44.61 3.08
260 261 2.216898 GGCATCAGCAGCTAAACCTAG 58.783 52.381 0.00 0.00 44.61 3.02
261 262 3.638702 GGCATCAGCAGCTAAACCTAGC 61.639 54.545 0.00 0.00 43.46 3.42
295 296 7.872113 TTTTTAGGCATGTTTGGTTTCAAAT 57.128 28.000 0.00 0.00 43.73 2.32
296 297 8.964476 TTTTTAGGCATGTTTGGTTTCAAATA 57.036 26.923 0.00 0.00 43.73 1.40
297 298 8.964476 TTTTAGGCATGTTTGGTTTCAAATAA 57.036 26.923 0.00 0.00 43.73 1.40
298 299 8.600449 TTTAGGCATGTTTGGTTTCAAATAAG 57.400 30.769 0.00 0.00 43.73 1.73
299 300 6.173427 AGGCATGTTTGGTTTCAAATAAGT 57.827 33.333 0.00 0.00 43.73 2.24
300 301 6.223120 AGGCATGTTTGGTTTCAAATAAGTC 58.777 36.000 0.00 0.00 43.73 3.01
301 302 5.988561 GGCATGTTTGGTTTCAAATAAGTCA 59.011 36.000 0.00 0.00 43.73 3.41
302 303 6.073819 GGCATGTTTGGTTTCAAATAAGTCAC 60.074 38.462 0.00 0.00 43.73 3.67
303 304 6.073819 GCATGTTTGGTTTCAAATAAGTCACC 60.074 38.462 0.00 0.00 43.73 4.02
304 305 6.531503 TGTTTGGTTTCAAATAAGTCACCA 57.468 33.333 0.00 0.00 43.73 4.17
305 306 6.936279 TGTTTGGTTTCAAATAAGTCACCAA 58.064 32.000 0.00 0.00 43.73 3.67
306 307 6.814146 TGTTTGGTTTCAAATAAGTCACCAAC 59.186 34.615 1.03 0.00 42.59 3.77
307 308 6.783708 TTGGTTTCAAATAAGTCACCAACT 57.216 33.333 0.00 0.00 38.97 3.16
308 309 7.547722 GTTTGGTTTCAAATAAGTCACCAACTT 59.452 33.333 1.03 0.00 42.59 2.66
349 350 7.913674 AAAAAGTGACTTATTTTGCCAAACA 57.086 28.000 0.00 0.00 0.00 2.83
350 351 7.538303 AAAAGTGACTTATTTTGCCAAACAG 57.462 32.000 0.00 0.00 0.00 3.16
351 352 5.200368 AGTGACTTATTTTGCCAAACAGG 57.800 39.130 0.00 0.00 41.84 4.00
364 365 4.568152 CCAAACAGGCCCGATTTATAAG 57.432 45.455 0.00 0.00 0.00 1.73
365 366 3.951680 CCAAACAGGCCCGATTTATAAGT 59.048 43.478 0.00 0.00 0.00 2.24
366 367 4.036380 CCAAACAGGCCCGATTTATAAGTC 59.964 45.833 0.00 0.00 0.00 3.01
367 368 4.497291 AACAGGCCCGATTTATAAGTCA 57.503 40.909 0.00 0.00 0.00 3.41
368 369 3.805207 ACAGGCCCGATTTATAAGTCAC 58.195 45.455 0.00 0.00 0.00 3.67
369 370 3.139077 CAGGCCCGATTTATAAGTCACC 58.861 50.000 0.00 6.27 0.00 4.02
370 371 2.105993 AGGCCCGATTTATAAGTCACCC 59.894 50.000 0.00 5.06 0.00 4.61
371 372 2.501261 GCCCGATTTATAAGTCACCCC 58.499 52.381 8.51 0.00 0.00 4.95
372 373 2.158726 GCCCGATTTATAAGTCACCCCA 60.159 50.000 8.51 0.00 0.00 4.96
373 374 3.686120 GCCCGATTTATAAGTCACCCCAA 60.686 47.826 8.51 0.00 0.00 4.12
374 375 3.881089 CCCGATTTATAAGTCACCCCAAC 59.119 47.826 8.51 0.00 0.00 3.77
375 376 4.384868 CCCGATTTATAAGTCACCCCAACT 60.385 45.833 8.51 0.00 0.00 3.16
376 377 5.190677 CCGATTTATAAGTCACCCCAACTT 58.809 41.667 8.51 0.00 40.06 2.66
377 378 6.350906 CCGATTTATAAGTCACCCCAACTTA 58.649 40.000 8.51 0.00 41.91 2.24
378 379 6.996282 CCGATTTATAAGTCACCCCAACTTAT 59.004 38.462 11.86 11.86 46.48 1.73
379 380 8.152246 CCGATTTATAAGTCACCCCAACTTATA 58.848 37.037 8.51 10.26 44.28 0.98
384 385 5.836024 AAGTCACCCCAACTTATAAGTCA 57.164 39.130 18.28 0.00 38.57 3.41
385 386 6.388619 AAGTCACCCCAACTTATAAGTCAT 57.611 37.500 18.28 1.19 38.57 3.06
386 387 7.504926 AAGTCACCCCAACTTATAAGTCATA 57.495 36.000 18.28 0.00 38.57 2.15
387 388 7.504926 AGTCACCCCAACTTATAAGTCATAA 57.495 36.000 18.28 0.00 38.57 1.90
398 399 7.484035 CTTATAAGTCATAAGTTGCTCCACC 57.516 40.000 4.18 0.00 40.84 4.61
399 400 2.789409 AGTCATAAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
400 401 1.282157 AGTCATAAGTTGCTCCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
401 402 1.004277 GTCATAAGTTGCTCCACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
402 403 1.707989 TCATAAGTTGCTCCACCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
403 404 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
404 405 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
405 406 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
406 407 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
407 408 1.497286 AGTTGCTCCACCCCAACTTAA 59.503 47.619 0.56 0.00 46.86 1.85
408 409 2.091555 AGTTGCTCCACCCCAACTTAAA 60.092 45.455 0.56 0.00 46.86 1.52
409 410 2.696187 GTTGCTCCACCCCAACTTAAAA 59.304 45.455 0.00 0.00 38.55 1.52
410 411 2.312390 TGCTCCACCCCAACTTAAAAC 58.688 47.619 0.00 0.00 0.00 2.43
411 412 2.091555 TGCTCCACCCCAACTTAAAACT 60.092 45.455 0.00 0.00 0.00 2.66
412 413 2.963101 GCTCCACCCCAACTTAAAACTT 59.037 45.455 0.00 0.00 0.00 2.66
413 414 4.146564 GCTCCACCCCAACTTAAAACTTA 58.853 43.478 0.00 0.00 0.00 2.24
414 415 4.770531 GCTCCACCCCAACTTAAAACTTAT 59.229 41.667 0.00 0.00 0.00 1.73
415 416 5.947566 GCTCCACCCCAACTTAAAACTTATA 59.052 40.000 0.00 0.00 0.00 0.98
416 417 6.095021 GCTCCACCCCAACTTAAAACTTATAG 59.905 42.308 0.00 0.00 0.00 1.31
417 418 7.093965 TCCACCCCAACTTAAAACTTATAGT 57.906 36.000 0.00 0.00 0.00 2.12
418 419 8.217188 TCCACCCCAACTTAAAACTTATAGTA 57.783 34.615 0.00 0.00 0.00 1.82
419 420 8.102676 TCCACCCCAACTTAAAACTTATAGTAC 58.897 37.037 0.00 0.00 0.00 2.73
420 421 7.337689 CCACCCCAACTTAAAACTTATAGTACC 59.662 40.741 0.00 0.00 0.00 3.34
421 422 8.105197 CACCCCAACTTAAAACTTATAGTACCT 58.895 37.037 0.00 0.00 0.00 3.08
422 423 8.672329 ACCCCAACTTAAAACTTATAGTACCTT 58.328 33.333 0.00 0.00 0.00 3.50
423 424 9.170734 CCCCAACTTAAAACTTATAGTACCTTC 57.829 37.037 0.00 0.00 0.00 3.46
424 425 9.729281 CCCAACTTAAAACTTATAGTACCTTCA 57.271 33.333 0.00 0.00 0.00 3.02
428 429 8.806146 ACTTAAAACTTATAGTACCTTCACCGA 58.194 33.333 0.00 0.00 0.00 4.69
434 435 7.545489 ACTTATAGTACCTTCACCGAGAAAAG 58.455 38.462 0.00 0.00 35.40 2.27
505 510 2.343484 TGATCGTAGTCTGGATCCGT 57.657 50.000 7.39 0.00 38.60 4.69
595 600 1.596895 GGTCTTCTCCTTCTCGCCGT 61.597 60.000 0.00 0.00 0.00 5.68
1409 1426 0.034186 TCGGCCAAGCTCAAATCCAT 60.034 50.000 2.24 0.00 0.00 3.41
1508 1525 1.380302 GTCCAAGTCCTGGCACCAT 59.620 57.895 0.00 0.00 45.98 3.55
1737 1754 4.356979 CCTAAGCGAGGGTCCAGA 57.643 61.111 0.00 0.00 42.39 3.86
1912 1929 2.438434 AGGCGGGTGCTAATGTGC 60.438 61.111 0.00 0.00 42.25 4.57
1928 1945 4.603535 GCTGGCCCTGGTTGTGGT 62.604 66.667 0.00 0.00 0.00 4.16
1956 1973 1.550524 TCCGATGCAGCTTGTACTTCT 59.449 47.619 0.00 0.00 0.00 2.85
1996 2013 6.147821 CGATGTGGAATCTAACAAGAAACAGT 59.852 38.462 0.00 0.00 0.00 3.55
2219 2236 6.938698 TTTATGTGGTCTCTAGGGTTTACA 57.061 37.500 0.00 0.00 0.00 2.41
2230 2247 0.603065 GGGTTTACAGGCTGCTTTGG 59.397 55.000 15.89 0.00 0.00 3.28
2293 2310 3.005050 TGGACGTCAACTACTACTGTTGG 59.995 47.826 18.91 0.00 43.36 3.77
2338 2355 5.005779 GGTGTATTGATGTTCGTGTGAGATC 59.994 44.000 0.00 0.00 0.00 2.75
2434 2451 2.300437 AGCTCCTAAGACGCTTGAAACT 59.700 45.455 2.86 0.00 0.00 2.66
2482 2499 1.739371 CGGAGATTTCAACGAGGTCCC 60.739 57.143 0.00 0.00 0.00 4.46
2629 2646 3.474570 GCAGGATCCCGACAGCCT 61.475 66.667 8.55 0.00 0.00 4.58
2829 2846 3.309436 ATGTGGCTTCGTGCGGCTA 62.309 57.895 0.00 0.00 44.05 3.93
3010 3027 2.689691 GGCTGGCCACCATTAGGGA 61.690 63.158 16.71 0.00 41.15 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.227002 GTACGCTACCTGCTCTGGC 60.227 63.158 0.00 0.00 40.11 4.85
7 8 0.530744 TTGTACGCTACCTGCTCTGG 59.469 55.000 0.00 0.00 40.11 3.86
8 9 1.914634 CTTGTACGCTACCTGCTCTG 58.085 55.000 0.00 0.00 40.11 3.35
9 10 0.173708 GCTTGTACGCTACCTGCTCT 59.826 55.000 0.00 0.00 40.11 4.09
10 11 0.108804 TGCTTGTACGCTACCTGCTC 60.109 55.000 0.00 0.00 40.11 4.26
11 12 0.389948 GTGCTTGTACGCTACCTGCT 60.390 55.000 0.00 0.00 40.11 4.24
12 13 0.669318 TGTGCTTGTACGCTACCTGC 60.669 55.000 0.00 0.00 38.57 4.85
13 14 1.459592 GTTGTGCTTGTACGCTACCTG 59.540 52.381 0.00 0.00 0.00 4.00
14 15 1.069513 TGTTGTGCTTGTACGCTACCT 59.930 47.619 0.00 0.00 0.00 3.08
15 16 1.459592 CTGTTGTGCTTGTACGCTACC 59.540 52.381 0.00 0.00 0.00 3.18
16 17 2.400399 TCTGTTGTGCTTGTACGCTAC 58.600 47.619 0.00 0.00 0.00 3.58
17 18 2.609491 CCTCTGTTGTGCTTGTACGCTA 60.609 50.000 0.00 0.00 0.00 4.26
18 19 1.502231 CTCTGTTGTGCTTGTACGCT 58.498 50.000 0.00 0.00 0.00 5.07
19 20 0.512952 CCTCTGTTGTGCTTGTACGC 59.487 55.000 0.00 0.00 0.00 4.42
20 21 0.512952 GCCTCTGTTGTGCTTGTACG 59.487 55.000 0.00 0.00 0.00 3.67
21 22 0.875059 GGCCTCTGTTGTGCTTGTAC 59.125 55.000 0.00 0.00 0.00 2.90
22 23 0.472044 TGGCCTCTGTTGTGCTTGTA 59.528 50.000 3.32 0.00 0.00 2.41
23 24 0.820891 CTGGCCTCTGTTGTGCTTGT 60.821 55.000 3.32 0.00 0.00 3.16
24 25 0.535780 TCTGGCCTCTGTTGTGCTTG 60.536 55.000 3.32 0.00 0.00 4.01
25 26 0.183492 TTCTGGCCTCTGTTGTGCTT 59.817 50.000 3.32 0.00 0.00 3.91
26 27 0.250640 CTTCTGGCCTCTGTTGTGCT 60.251 55.000 3.32 0.00 0.00 4.40
27 28 1.239968 CCTTCTGGCCTCTGTTGTGC 61.240 60.000 3.32 0.00 0.00 4.57
28 29 0.607489 CCCTTCTGGCCTCTGTTGTG 60.607 60.000 3.32 0.00 0.00 3.33
29 30 0.768221 TCCCTTCTGGCCTCTGTTGT 60.768 55.000 3.32 0.00 0.00 3.32
30 31 0.622665 ATCCCTTCTGGCCTCTGTTG 59.377 55.000 3.32 0.00 0.00 3.33
31 32 0.915364 GATCCCTTCTGGCCTCTGTT 59.085 55.000 3.32 0.00 0.00 3.16
32 33 1.333636 CGATCCCTTCTGGCCTCTGT 61.334 60.000 3.32 0.00 0.00 3.41
33 34 1.045350 TCGATCCCTTCTGGCCTCTG 61.045 60.000 3.32 0.00 0.00 3.35
34 35 0.325671 TTCGATCCCTTCTGGCCTCT 60.326 55.000 3.32 0.00 0.00 3.69
35 36 0.105778 CTTCGATCCCTTCTGGCCTC 59.894 60.000 3.32 0.00 0.00 4.70
36 37 1.341156 CCTTCGATCCCTTCTGGCCT 61.341 60.000 3.32 0.00 0.00 5.19
37 38 1.147153 CCTTCGATCCCTTCTGGCC 59.853 63.158 0.00 0.00 0.00 5.36
38 39 0.761802 ATCCTTCGATCCCTTCTGGC 59.238 55.000 0.00 0.00 0.00 4.85
39 40 1.765314 ACATCCTTCGATCCCTTCTGG 59.235 52.381 0.00 0.00 0.00 3.86
40 41 2.432146 TCACATCCTTCGATCCCTTCTG 59.568 50.000 0.00 0.00 0.00 3.02
41 42 2.752030 TCACATCCTTCGATCCCTTCT 58.248 47.619 0.00 0.00 0.00 2.85
42 43 3.543680 TTCACATCCTTCGATCCCTTC 57.456 47.619 0.00 0.00 0.00 3.46
43 44 4.010349 GTTTTCACATCCTTCGATCCCTT 58.990 43.478 0.00 0.00 0.00 3.95
44 45 3.264450 AGTTTTCACATCCTTCGATCCCT 59.736 43.478 0.00 0.00 0.00 4.20
45 46 3.375299 CAGTTTTCACATCCTTCGATCCC 59.625 47.826 0.00 0.00 0.00 3.85
46 47 3.375299 CCAGTTTTCACATCCTTCGATCC 59.625 47.826 0.00 0.00 0.00 3.36
47 48 4.253685 TCCAGTTTTCACATCCTTCGATC 58.746 43.478 0.00 0.00 0.00 3.69
48 49 4.256920 CTCCAGTTTTCACATCCTTCGAT 58.743 43.478 0.00 0.00 0.00 3.59
49 50 3.664107 CTCCAGTTTTCACATCCTTCGA 58.336 45.455 0.00 0.00 0.00 3.71
50 51 2.160417 GCTCCAGTTTTCACATCCTTCG 59.840 50.000 0.00 0.00 0.00 3.79
51 52 3.149196 TGCTCCAGTTTTCACATCCTTC 58.851 45.455 0.00 0.00 0.00 3.46
52 53 3.152341 CTGCTCCAGTTTTCACATCCTT 58.848 45.455 0.00 0.00 0.00 3.36
53 54 2.107204 ACTGCTCCAGTTTTCACATCCT 59.893 45.455 0.00 0.00 42.59 3.24
54 55 2.227388 CACTGCTCCAGTTTTCACATCC 59.773 50.000 0.00 0.00 42.59 3.51
55 56 3.141398 TCACTGCTCCAGTTTTCACATC 58.859 45.455 0.00 0.00 42.59 3.06
56 57 3.213206 TCACTGCTCCAGTTTTCACAT 57.787 42.857 0.00 0.00 42.59 3.21
57 58 2.708216 TCACTGCTCCAGTTTTCACA 57.292 45.000 0.00 0.00 42.59 3.58
58 59 5.181748 AGATATCACTGCTCCAGTTTTCAC 58.818 41.667 5.32 0.00 42.59 3.18
59 60 5.426689 AGATATCACTGCTCCAGTTTTCA 57.573 39.130 5.32 0.00 42.59 2.69
60 61 5.295540 GGAAGATATCACTGCTCCAGTTTTC 59.704 44.000 5.32 0.00 42.59 2.29
61 62 5.045286 AGGAAGATATCACTGCTCCAGTTTT 60.045 40.000 5.32 0.00 42.59 2.43
62 63 4.472833 AGGAAGATATCACTGCTCCAGTTT 59.527 41.667 5.32 0.00 42.59 2.66
63 64 4.036518 AGGAAGATATCACTGCTCCAGTT 58.963 43.478 5.32 0.00 42.59 3.16
64 65 3.652055 AGGAAGATATCACTGCTCCAGT 58.348 45.455 5.32 0.00 46.51 4.00
65 66 4.320861 CGTAGGAAGATATCACTGCTCCAG 60.321 50.000 5.32 0.00 37.52 3.86
66 67 3.570125 CGTAGGAAGATATCACTGCTCCA 59.430 47.826 5.32 0.00 0.00 3.86
67 68 3.570550 ACGTAGGAAGATATCACTGCTCC 59.429 47.826 5.32 3.04 0.00 4.70
68 69 4.839668 ACGTAGGAAGATATCACTGCTC 57.160 45.455 5.32 0.00 0.00 4.26
69 70 5.593095 TGTAACGTAGGAAGATATCACTGCT 59.407 40.000 5.32 4.91 0.00 4.24
70 71 5.828747 TGTAACGTAGGAAGATATCACTGC 58.171 41.667 5.32 3.19 0.00 4.40
71 72 7.481642 ACTTGTAACGTAGGAAGATATCACTG 58.518 38.462 5.32 0.00 0.00 3.66
72 73 7.642082 ACTTGTAACGTAGGAAGATATCACT 57.358 36.000 5.32 2.87 0.00 3.41
73 74 7.758528 ACAACTTGTAACGTAGGAAGATATCAC 59.241 37.037 5.32 0.00 0.00 3.06
74 75 7.758076 CACAACTTGTAACGTAGGAAGATATCA 59.242 37.037 5.32 0.00 0.00 2.15
75 76 7.254017 GCACAACTTGTAACGTAGGAAGATATC 60.254 40.741 7.22 0.00 0.00 1.63
76 77 6.534079 GCACAACTTGTAACGTAGGAAGATAT 59.466 38.462 7.22 0.00 0.00 1.63
77 78 5.865552 GCACAACTTGTAACGTAGGAAGATA 59.134 40.000 7.22 0.00 0.00 1.98
78 79 4.689345 GCACAACTTGTAACGTAGGAAGAT 59.311 41.667 7.22 0.00 0.00 2.40
79 80 4.053295 GCACAACTTGTAACGTAGGAAGA 58.947 43.478 7.22 0.00 0.00 2.87
80 81 3.121126 CGCACAACTTGTAACGTAGGAAG 60.121 47.826 7.89 0.00 0.00 3.46
81 82 2.796031 CGCACAACTTGTAACGTAGGAA 59.204 45.455 7.89 0.00 0.00 3.36
82 83 2.396601 CGCACAACTTGTAACGTAGGA 58.603 47.619 7.89 0.00 0.00 2.94
83 84 1.458064 CCGCACAACTTGTAACGTAGG 59.542 52.381 12.84 1.12 30.21 3.18
84 85 1.458064 CCCGCACAACTTGTAACGTAG 59.542 52.381 12.84 0.00 30.21 3.51
85 86 1.500108 CCCGCACAACTTGTAACGTA 58.500 50.000 12.84 0.00 30.21 3.57
86 87 1.778027 GCCCGCACAACTTGTAACGT 61.778 55.000 12.84 0.00 30.21 3.99
87 88 1.082366 GCCCGCACAACTTGTAACG 60.082 57.895 8.76 8.76 0.00 3.18
88 89 0.040425 CAGCCCGCACAACTTGTAAC 60.040 55.000 0.00 0.00 0.00 2.50
89 90 0.179043 TCAGCCCGCACAACTTGTAA 60.179 50.000 0.00 0.00 0.00 2.41
90 91 0.036164 ATCAGCCCGCACAACTTGTA 59.964 50.000 0.00 0.00 0.00 2.41
91 92 0.823356 AATCAGCCCGCACAACTTGT 60.823 50.000 0.00 0.00 0.00 3.16
92 93 0.387622 CAATCAGCCCGCACAACTTG 60.388 55.000 0.00 0.00 0.00 3.16
93 94 0.537143 TCAATCAGCCCGCACAACTT 60.537 50.000 0.00 0.00 0.00 2.66
94 95 0.537143 TTCAATCAGCCCGCACAACT 60.537 50.000 0.00 0.00 0.00 3.16
95 96 0.527565 ATTCAATCAGCCCGCACAAC 59.472 50.000 0.00 0.00 0.00 3.32
96 97 0.810648 GATTCAATCAGCCCGCACAA 59.189 50.000 0.00 0.00 0.00 3.33
97 98 0.322366 TGATTCAATCAGCCCGCACA 60.322 50.000 0.00 0.00 33.59 4.57
98 99 1.027357 ATGATTCAATCAGCCCGCAC 58.973 50.000 6.19 0.00 43.53 5.34
99 100 1.026584 CATGATTCAATCAGCCCGCA 58.973 50.000 6.19 0.00 43.53 5.69
100 101 0.313043 CCATGATTCAATCAGCCCGC 59.687 55.000 6.19 0.00 43.53 6.13
101 102 0.313043 GCCATGATTCAATCAGCCCG 59.687 55.000 6.19 0.00 43.53 6.13
102 103 1.405872 TGCCATGATTCAATCAGCCC 58.594 50.000 6.19 0.00 43.53 5.19
103 104 3.746045 AATGCCATGATTCAATCAGCC 57.254 42.857 6.19 0.00 43.53 4.85
104 105 4.689071 TGAAATGCCATGATTCAATCAGC 58.311 39.130 6.19 5.49 43.53 4.26
105 106 8.523658 AGATATGAAATGCCATGATTCAATCAG 58.476 33.333 6.19 0.00 43.53 2.90
106 107 8.303876 CAGATATGAAATGCCATGATTCAATCA 58.696 33.333 1.59 1.59 44.55 2.57
107 108 7.759886 CCAGATATGAAATGCCATGATTCAATC 59.240 37.037 0.00 0.00 36.72 2.67
108 109 7.234782 ACCAGATATGAAATGCCATGATTCAAT 59.765 33.333 0.00 0.00 36.72 2.57
109 110 6.551975 ACCAGATATGAAATGCCATGATTCAA 59.448 34.615 0.00 0.00 36.72 2.69
110 111 6.015772 CACCAGATATGAAATGCCATGATTCA 60.016 38.462 0.00 0.00 37.47 2.57
111 112 6.387465 CACCAGATATGAAATGCCATGATTC 58.613 40.000 0.00 0.00 0.00 2.52
112 113 5.279306 GCACCAGATATGAAATGCCATGATT 60.279 40.000 0.00 0.00 0.00 2.57
113 114 4.219944 GCACCAGATATGAAATGCCATGAT 59.780 41.667 0.00 0.00 0.00 2.45
114 115 3.570975 GCACCAGATATGAAATGCCATGA 59.429 43.478 0.00 0.00 0.00 3.07
115 116 3.572682 AGCACCAGATATGAAATGCCATG 59.427 43.478 7.34 0.00 33.50 3.66
116 117 3.840991 AGCACCAGATATGAAATGCCAT 58.159 40.909 7.34 0.00 33.50 4.40
117 118 3.301794 AGCACCAGATATGAAATGCCA 57.698 42.857 7.34 0.00 33.50 4.92
118 119 3.887716 AGAAGCACCAGATATGAAATGCC 59.112 43.478 7.34 0.00 33.50 4.40
119 120 5.511234 AAGAAGCACCAGATATGAAATGC 57.489 39.130 3.79 3.79 0.00 3.56
120 121 5.747197 GCAAAGAAGCACCAGATATGAAATG 59.253 40.000 0.00 0.00 0.00 2.32
121 122 5.655532 AGCAAAGAAGCACCAGATATGAAAT 59.344 36.000 0.00 0.00 36.85 2.17
122 123 5.012239 AGCAAAGAAGCACCAGATATGAAA 58.988 37.500 0.00 0.00 36.85 2.69
123 124 4.397103 CAGCAAAGAAGCACCAGATATGAA 59.603 41.667 0.00 0.00 36.85 2.57
124 125 3.943381 CAGCAAAGAAGCACCAGATATGA 59.057 43.478 0.00 0.00 36.85 2.15
125 126 3.066342 CCAGCAAAGAAGCACCAGATATG 59.934 47.826 0.00 0.00 36.85 1.78
126 127 3.285484 CCAGCAAAGAAGCACCAGATAT 58.715 45.455 0.00 0.00 36.85 1.63
127 128 2.618816 CCCAGCAAAGAAGCACCAGATA 60.619 50.000 0.00 0.00 36.85 1.98
128 129 1.542492 CCAGCAAAGAAGCACCAGAT 58.458 50.000 0.00 0.00 36.85 2.90
129 130 0.538057 CCCAGCAAAGAAGCACCAGA 60.538 55.000 0.00 0.00 36.85 3.86
130 131 1.962144 CCCAGCAAAGAAGCACCAG 59.038 57.895 0.00 0.00 36.85 4.00
131 132 2.202395 GCCCAGCAAAGAAGCACCA 61.202 57.895 0.00 0.00 36.85 4.17
132 133 2.653115 GCCCAGCAAAGAAGCACC 59.347 61.111 0.00 0.00 36.85 5.01
133 134 2.256461 CGCCCAGCAAAGAAGCAC 59.744 61.111 0.00 0.00 36.85 4.40
134 135 2.203337 ACGCCCAGCAAAGAAGCA 60.203 55.556 0.00 0.00 36.85 3.91
135 136 2.563427 GACGCCCAGCAAAGAAGC 59.437 61.111 0.00 0.00 0.00 3.86
136 137 1.302832 AGGACGCCCAGCAAAGAAG 60.303 57.895 0.00 0.00 33.88 2.85
137 138 1.600636 CAGGACGCCCAGCAAAGAA 60.601 57.895 0.00 0.00 33.88 2.52
138 139 2.032528 CAGGACGCCCAGCAAAGA 59.967 61.111 0.00 0.00 33.88 2.52
139 140 2.032528 TCAGGACGCCCAGCAAAG 59.967 61.111 0.00 0.00 33.88 2.77
140 141 2.281484 GTCAGGACGCCCAGCAAA 60.281 61.111 0.00 0.00 33.88 3.68
141 142 4.329545 GGTCAGGACGCCCAGCAA 62.330 66.667 0.00 0.00 33.88 3.91
144 145 4.742201 CGTGGTCAGGACGCCCAG 62.742 72.222 0.00 0.00 33.88 4.45
149 150 1.284982 CTTTCTGCGTGGTCAGGACG 61.285 60.000 0.00 0.00 39.87 4.79
150 151 0.033504 TCTTTCTGCGTGGTCAGGAC 59.966 55.000 0.00 0.00 34.91 3.85
151 152 0.756294 TTCTTTCTGCGTGGTCAGGA 59.244 50.000 0.00 0.00 34.91 3.86
152 153 1.532868 CTTTCTTTCTGCGTGGTCAGG 59.467 52.381 0.00 0.00 34.91 3.86
153 154 2.483876 TCTTTCTTTCTGCGTGGTCAG 58.516 47.619 0.00 0.00 35.46 3.51
154 155 2.613026 TCTTTCTTTCTGCGTGGTCA 57.387 45.000 0.00 0.00 0.00 4.02
155 156 3.560068 TCTTTCTTTCTTTCTGCGTGGTC 59.440 43.478 0.00 0.00 0.00 4.02
156 157 3.541632 TCTTTCTTTCTTTCTGCGTGGT 58.458 40.909 0.00 0.00 0.00 4.16
157 158 4.552166 TTCTTTCTTTCTTTCTGCGTGG 57.448 40.909 0.00 0.00 0.00 4.94
158 159 5.751680 TGATTCTTTCTTTCTTTCTGCGTG 58.248 37.500 0.00 0.00 0.00 5.34
159 160 6.566197 ATGATTCTTTCTTTCTTTCTGCGT 57.434 33.333 0.00 0.00 0.00 5.24
160 161 6.686253 GCTATGATTCTTTCTTTCTTTCTGCG 59.314 38.462 0.00 0.00 0.00 5.18
161 162 7.533426 TGCTATGATTCTTTCTTTCTTTCTGC 58.467 34.615 0.00 0.00 0.00 4.26
162 163 8.944029 TCTGCTATGATTCTTTCTTTCTTTCTG 58.056 33.333 0.00 0.00 0.00 3.02
163 164 9.683870 ATCTGCTATGATTCTTTCTTTCTTTCT 57.316 29.630 0.00 0.00 0.00 2.52
164 165 9.934190 GATCTGCTATGATTCTTTCTTTCTTTC 57.066 33.333 0.00 0.00 0.00 2.62
165 166 9.683870 AGATCTGCTATGATTCTTTCTTTCTTT 57.316 29.630 0.00 0.00 0.00 2.52
166 167 9.683870 AAGATCTGCTATGATTCTTTCTTTCTT 57.316 29.630 0.00 0.00 0.00 2.52
170 171 9.723601 GGATAAGATCTGCTATGATTCTTTCTT 57.276 33.333 0.00 0.00 0.00 2.52
171 172 9.103582 AGGATAAGATCTGCTATGATTCTTTCT 57.896 33.333 0.00 0.00 0.00 2.52
174 175 8.465999 CGTAGGATAAGATCTGCTATGATTCTT 58.534 37.037 0.00 0.00 0.00 2.52
175 176 7.416213 GCGTAGGATAAGATCTGCTATGATTCT 60.416 40.741 0.00 0.00 0.00 2.40
176 177 6.695278 GCGTAGGATAAGATCTGCTATGATTC 59.305 42.308 0.00 0.00 0.00 2.52
177 178 6.406400 GGCGTAGGATAAGATCTGCTATGATT 60.406 42.308 0.00 0.00 0.00 2.57
178 179 5.068460 GGCGTAGGATAAGATCTGCTATGAT 59.932 44.000 0.00 0.00 0.00 2.45
179 180 4.399618 GGCGTAGGATAAGATCTGCTATGA 59.600 45.833 0.00 0.00 0.00 2.15
180 181 4.440802 GGGCGTAGGATAAGATCTGCTATG 60.441 50.000 0.00 0.00 0.00 2.23
181 182 3.702045 GGGCGTAGGATAAGATCTGCTAT 59.298 47.826 0.00 0.00 0.00 2.97
182 183 3.090037 GGGCGTAGGATAAGATCTGCTA 58.910 50.000 0.00 0.00 0.00 3.49
183 184 1.896465 GGGCGTAGGATAAGATCTGCT 59.104 52.381 0.00 0.00 0.00 4.24
184 185 1.402984 CGGGCGTAGGATAAGATCTGC 60.403 57.143 0.00 0.00 0.00 4.26
185 186 1.402984 GCGGGCGTAGGATAAGATCTG 60.403 57.143 0.00 0.00 0.00 2.90
186 187 0.889306 GCGGGCGTAGGATAAGATCT 59.111 55.000 0.00 0.00 0.00 2.75
187 188 0.601558 TGCGGGCGTAGGATAAGATC 59.398 55.000 0.00 0.00 0.00 2.75
188 189 1.267121 ATGCGGGCGTAGGATAAGAT 58.733 50.000 0.00 0.00 0.00 2.40
189 190 1.542915 GTATGCGGGCGTAGGATAAGA 59.457 52.381 0.00 0.00 0.00 2.10
190 191 1.731424 CGTATGCGGGCGTAGGATAAG 60.731 57.143 6.73 0.00 0.00 1.73
191 192 0.241749 CGTATGCGGGCGTAGGATAA 59.758 55.000 6.73 0.00 0.00 1.75
192 193 1.878070 CGTATGCGGGCGTAGGATA 59.122 57.895 6.73 0.00 0.00 2.59
193 194 2.649034 CGTATGCGGGCGTAGGAT 59.351 61.111 6.73 0.00 0.00 3.24
204 205 1.002250 CATACTCGCGTCCCGTATGC 61.002 60.000 19.09 0.00 35.58 3.14
205 206 0.386858 CCATACTCGCGTCCCGTATG 60.387 60.000 21.68 21.68 39.90 2.39
206 207 1.521450 CCCATACTCGCGTCCCGTAT 61.521 60.000 5.77 6.65 38.35 3.06
207 208 2.188829 CCCATACTCGCGTCCCGTA 61.189 63.158 5.77 4.43 38.35 4.02
208 209 3.524606 CCCATACTCGCGTCCCGT 61.525 66.667 5.77 2.08 38.35 5.28
209 210 4.280494 CCCCATACTCGCGTCCCG 62.280 72.222 5.77 0.00 38.61 5.14
210 211 1.755393 ATTCCCCATACTCGCGTCCC 61.755 60.000 5.77 0.00 0.00 4.46
211 212 0.106149 AATTCCCCATACTCGCGTCC 59.894 55.000 5.77 0.00 0.00 4.79
212 213 1.202486 TGAATTCCCCATACTCGCGTC 60.202 52.381 5.77 0.00 0.00 5.19
213 214 0.828022 TGAATTCCCCATACTCGCGT 59.172 50.000 5.77 0.00 0.00 6.01
214 215 1.867233 CTTGAATTCCCCATACTCGCG 59.133 52.381 0.00 0.00 0.00 5.87
215 216 2.919228 ACTTGAATTCCCCATACTCGC 58.081 47.619 2.27 0.00 0.00 5.03
216 217 4.513442 TCAACTTGAATTCCCCATACTCG 58.487 43.478 2.27 0.00 0.00 4.18
217 218 5.300286 CCATCAACTTGAATTCCCCATACTC 59.700 44.000 2.27 0.00 0.00 2.59
218 219 5.203528 CCATCAACTTGAATTCCCCATACT 58.796 41.667 2.27 0.00 0.00 2.12
219 220 4.202151 GCCATCAACTTGAATTCCCCATAC 60.202 45.833 2.27 0.00 0.00 2.39
220 221 3.960102 GCCATCAACTTGAATTCCCCATA 59.040 43.478 2.27 0.00 0.00 2.74
221 222 2.767960 GCCATCAACTTGAATTCCCCAT 59.232 45.455 2.27 0.00 0.00 4.00
222 223 2.178580 GCCATCAACTTGAATTCCCCA 58.821 47.619 2.27 0.00 0.00 4.96
223 224 2.178580 TGCCATCAACTTGAATTCCCC 58.821 47.619 2.27 0.00 0.00 4.81
224 225 3.448301 TGATGCCATCAACTTGAATTCCC 59.552 43.478 4.55 0.00 36.11 3.97
225 226 4.679662 CTGATGCCATCAACTTGAATTCC 58.320 43.478 9.00 0.00 39.11 3.01
226 227 4.110482 GCTGATGCCATCAACTTGAATTC 58.890 43.478 9.00 0.00 39.11 2.17
227 228 3.512329 TGCTGATGCCATCAACTTGAATT 59.488 39.130 9.00 0.00 39.11 2.17
228 229 3.093814 TGCTGATGCCATCAACTTGAAT 58.906 40.909 9.00 0.00 39.11 2.57
229 230 2.490509 CTGCTGATGCCATCAACTTGAA 59.509 45.455 9.00 0.00 39.11 2.69
230 231 2.089201 CTGCTGATGCCATCAACTTGA 58.911 47.619 9.00 0.00 39.11 3.02
231 232 1.469251 GCTGCTGATGCCATCAACTTG 60.469 52.381 9.00 3.55 39.11 3.16
232 233 0.815734 GCTGCTGATGCCATCAACTT 59.184 50.000 9.00 0.00 39.11 2.66
233 234 0.034380 AGCTGCTGATGCCATCAACT 60.034 50.000 9.00 1.52 39.11 3.16
234 235 1.671979 TAGCTGCTGATGCCATCAAC 58.328 50.000 13.43 4.92 39.11 3.18
235 236 2.423446 TTAGCTGCTGATGCCATCAA 57.577 45.000 13.43 0.00 39.11 2.57
236 237 2.019249 GTTTAGCTGCTGATGCCATCA 58.981 47.619 13.43 7.26 38.71 3.07
237 238 1.336125 GGTTTAGCTGCTGATGCCATC 59.664 52.381 13.43 0.00 38.71 3.51
238 239 1.064166 AGGTTTAGCTGCTGATGCCAT 60.064 47.619 13.43 0.00 38.71 4.40
239 240 0.329261 AGGTTTAGCTGCTGATGCCA 59.671 50.000 13.43 0.00 38.71 4.92
240 241 2.216898 CTAGGTTTAGCTGCTGATGCC 58.783 52.381 13.43 9.66 38.71 4.40
271 272 7.872113 ATTTGAAACCAAACATGCCTAAAAA 57.128 28.000 0.00 0.00 36.48 1.94
272 273 8.964476 TTATTTGAAACCAAACATGCCTAAAA 57.036 26.923 0.00 0.00 36.48 1.52
273 274 8.207545 ACTTATTTGAAACCAAACATGCCTAAA 58.792 29.630 0.00 0.00 36.48 1.85
274 275 7.731054 ACTTATTTGAAACCAAACATGCCTAA 58.269 30.769 0.00 0.00 36.48 2.69
275 276 7.014711 TGACTTATTTGAAACCAAACATGCCTA 59.985 33.333 0.00 0.00 36.48 3.93
276 277 6.173427 ACTTATTTGAAACCAAACATGCCT 57.827 33.333 0.00 0.00 36.48 4.75
277 278 5.988561 TGACTTATTTGAAACCAAACATGCC 59.011 36.000 0.00 0.00 36.48 4.40
278 279 6.073819 GGTGACTTATTTGAAACCAAACATGC 60.074 38.462 0.00 0.00 36.48 4.06
279 280 6.983307 TGGTGACTTATTTGAAACCAAACATG 59.017 34.615 0.00 0.00 36.48 3.21
280 281 7.118496 TGGTGACTTATTTGAAACCAAACAT 57.882 32.000 0.00 0.00 36.48 2.71
281 282 6.531503 TGGTGACTTATTTGAAACCAAACA 57.468 33.333 0.00 0.00 36.48 2.83
282 283 7.039270 AGTTGGTGACTTATTTGAAACCAAAC 58.961 34.615 6.65 2.75 46.21 2.93
283 284 7.176589 AGTTGGTGACTTATTTGAAACCAAA 57.823 32.000 6.65 0.00 46.21 3.28
284 285 6.783708 AGTTGGTGACTTATTTGAAACCAA 57.216 33.333 1.07 1.07 43.50 3.67
285 286 6.783708 AAGTTGGTGACTTATTTGAAACCA 57.216 33.333 0.00 0.00 46.61 3.67
325 326 7.065683 CCTGTTTGGCAAAATAAGTCACTTTTT 59.934 33.333 15.29 0.00 0.00 1.94
326 327 6.538381 CCTGTTTGGCAAAATAAGTCACTTTT 59.462 34.615 15.29 0.00 0.00 2.27
327 328 6.048509 CCTGTTTGGCAAAATAAGTCACTTT 58.951 36.000 15.29 0.00 0.00 2.66
328 329 5.600696 CCTGTTTGGCAAAATAAGTCACTT 58.399 37.500 15.29 0.00 0.00 3.16
329 330 5.200368 CCTGTTTGGCAAAATAAGTCACT 57.800 39.130 15.29 0.00 0.00 3.41
343 344 3.951680 ACTTATAAATCGGGCCTGTTTGG 59.048 43.478 12.43 6.77 39.35 3.28
344 345 4.638421 TGACTTATAAATCGGGCCTGTTTG 59.362 41.667 12.43 0.00 0.00 2.93
345 346 4.638865 GTGACTTATAAATCGGGCCTGTTT 59.361 41.667 12.43 13.50 0.00 2.83
346 347 4.196971 GTGACTTATAAATCGGGCCTGTT 58.803 43.478 12.43 0.00 0.00 3.16
347 348 3.433173 GGTGACTTATAAATCGGGCCTGT 60.433 47.826 12.43 0.00 0.00 4.00
348 349 3.139077 GGTGACTTATAAATCGGGCCTG 58.861 50.000 4.71 4.71 0.00 4.85
349 350 2.105993 GGGTGACTTATAAATCGGGCCT 59.894 50.000 0.84 0.00 0.00 5.19
350 351 2.501261 GGGTGACTTATAAATCGGGCC 58.499 52.381 0.00 0.00 0.00 5.80
351 352 2.158726 TGGGGTGACTTATAAATCGGGC 60.159 50.000 0.00 0.00 0.00 6.13
352 353 3.849563 TGGGGTGACTTATAAATCGGG 57.150 47.619 0.00 0.00 0.00 5.14
353 354 4.777463 AGTTGGGGTGACTTATAAATCGG 58.223 43.478 0.00 0.00 0.00 4.18
359 360 8.612486 TGACTTATAAGTTGGGGTGACTTATA 57.388 34.615 18.96 10.90 44.36 0.98
360 361 7.504926 TGACTTATAAGTTGGGGTGACTTAT 57.495 36.000 18.96 12.48 46.52 1.73
361 362 6.938698 TGACTTATAAGTTGGGGTGACTTA 57.061 37.500 18.96 0.00 42.07 2.24
362 363 5.836024 TGACTTATAAGTTGGGGTGACTT 57.164 39.130 18.96 0.00 39.88 3.01
363 364 7.504926 TTATGACTTATAAGTTGGGGTGACT 57.495 36.000 18.96 0.00 39.88 3.41
364 365 7.787725 CTTATGACTTATAAGTTGGGGTGAC 57.212 40.000 18.96 4.87 42.11 3.67
375 376 6.354130 GGGTGGAGCAACTTATGACTTATAA 58.646 40.000 0.00 0.00 0.00 0.98
376 377 5.163237 GGGGTGGAGCAACTTATGACTTATA 60.163 44.000 0.00 0.00 0.00 0.98
377 378 4.385310 GGGGTGGAGCAACTTATGACTTAT 60.385 45.833 0.00 0.00 0.00 1.73
378 379 3.054655 GGGGTGGAGCAACTTATGACTTA 60.055 47.826 0.00 0.00 0.00 2.24
379 380 2.290960 GGGGTGGAGCAACTTATGACTT 60.291 50.000 0.00 0.00 0.00 3.01
380 381 1.282157 GGGGTGGAGCAACTTATGACT 59.718 52.381 0.00 0.00 0.00 3.41
381 382 1.004277 TGGGGTGGAGCAACTTATGAC 59.996 52.381 0.00 0.00 0.00 3.06
382 383 1.367346 TGGGGTGGAGCAACTTATGA 58.633 50.000 0.00 0.00 0.00 2.15
383 384 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
384 385 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
385 386 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
386 387 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
387 388 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
388 389 1.989706 TTAAGTTGGGGTGGAGCAAC 58.010 50.000 0.00 0.00 0.00 4.17
389 390 2.696187 GTTTTAAGTTGGGGTGGAGCAA 59.304 45.455 0.00 0.00 0.00 3.91
390 391 2.091555 AGTTTTAAGTTGGGGTGGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
391 392 2.594131 AGTTTTAAGTTGGGGTGGAGC 58.406 47.619 0.00 0.00 0.00 4.70
392 393 7.173032 ACTATAAGTTTTAAGTTGGGGTGGAG 58.827 38.462 0.00 0.00 0.00 3.86
393 394 7.093965 ACTATAAGTTTTAAGTTGGGGTGGA 57.906 36.000 0.00 0.00 0.00 4.02
394 395 7.337689 GGTACTATAAGTTTTAAGTTGGGGTGG 59.662 40.741 0.00 0.00 0.00 4.61
395 396 8.105197 AGGTACTATAAGTTTTAAGTTGGGGTG 58.895 37.037 0.00 0.00 36.02 4.61
396 397 8.223378 AGGTACTATAAGTTTTAAGTTGGGGT 57.777 34.615 0.00 0.00 36.02 4.95
397 398 9.170734 GAAGGTACTATAAGTTTTAAGTTGGGG 57.829 37.037 0.00 0.00 38.49 4.96
398 399 9.729281 TGAAGGTACTATAAGTTTTAAGTTGGG 57.271 33.333 0.00 0.00 38.49 4.12
401 402 9.428097 CGGTGAAGGTACTATAAGTTTTAAGTT 57.572 33.333 0.00 0.00 38.49 2.66
402 403 8.806146 TCGGTGAAGGTACTATAAGTTTTAAGT 58.194 33.333 0.00 0.00 38.49 2.24
403 404 9.298774 CTCGGTGAAGGTACTATAAGTTTTAAG 57.701 37.037 0.00 0.00 38.49 1.85
404 405 9.023962 TCTCGGTGAAGGTACTATAAGTTTTAA 57.976 33.333 0.00 0.00 38.49 1.52
405 406 8.579850 TCTCGGTGAAGGTACTATAAGTTTTA 57.420 34.615 0.00 0.00 38.49 1.52
406 407 7.472334 TCTCGGTGAAGGTACTATAAGTTTT 57.528 36.000 0.00 0.00 38.49 2.43
407 408 7.472334 TTCTCGGTGAAGGTACTATAAGTTT 57.528 36.000 0.00 0.00 38.49 2.66
408 409 7.472334 TTTCTCGGTGAAGGTACTATAAGTT 57.528 36.000 0.00 0.00 38.49 2.66
409 410 7.395489 TCTTTTCTCGGTGAAGGTACTATAAGT 59.605 37.037 0.00 0.00 38.49 2.24
410 411 7.769220 TCTTTTCTCGGTGAAGGTACTATAAG 58.231 38.462 0.00 0.00 38.49 1.73
411 412 7.707624 TCTTTTCTCGGTGAAGGTACTATAA 57.292 36.000 0.00 0.00 38.49 0.98
412 413 7.341256 ACATCTTTTCTCGGTGAAGGTACTATA 59.659 37.037 0.00 0.00 38.49 1.31
413 414 6.154706 ACATCTTTTCTCGGTGAAGGTACTAT 59.845 38.462 0.00 0.00 38.49 2.12
414 415 5.479375 ACATCTTTTCTCGGTGAAGGTACTA 59.521 40.000 0.00 0.00 38.49 1.82
416 417 4.566987 ACATCTTTTCTCGGTGAAGGTAC 58.433 43.478 0.00 0.00 35.89 3.34
417 418 4.884668 ACATCTTTTCTCGGTGAAGGTA 57.115 40.909 0.00 0.00 35.89 3.08
418 419 3.771577 ACATCTTTTCTCGGTGAAGGT 57.228 42.857 0.00 0.00 35.89 3.50
419 420 3.437049 GGAACATCTTTTCTCGGTGAAGG 59.563 47.826 0.00 0.00 35.89 3.46
420 421 3.437049 GGGAACATCTTTTCTCGGTGAAG 59.563 47.826 0.00 0.00 35.89 3.02
421 422 3.408634 GGGAACATCTTTTCTCGGTGAA 58.591 45.455 0.00 0.00 0.00 3.18
422 423 2.290071 GGGGAACATCTTTTCTCGGTGA 60.290 50.000 0.00 0.00 0.00 4.02
423 424 2.084546 GGGGAACATCTTTTCTCGGTG 58.915 52.381 0.00 0.00 0.00 4.94
424 425 1.004394 GGGGGAACATCTTTTCTCGGT 59.996 52.381 0.00 0.00 0.00 4.69
425 426 1.004277 TGGGGGAACATCTTTTCTCGG 59.996 52.381 0.00 0.00 0.00 4.63
428 429 1.272704 GCCTGGGGGAACATCTTTTCT 60.273 52.381 0.00 0.00 33.58 2.52
434 435 1.529309 GAGAGCCTGGGGGAACATC 59.471 63.158 0.00 0.00 33.58 3.06
505 510 4.825634 GGATTGGATCAGCAATCAGAATCA 59.174 41.667 19.86 0.00 39.01 2.57
595 600 1.752198 CCTGAGTCACCCCGAACAA 59.248 57.895 0.00 0.00 0.00 2.83
769 774 4.514577 CGCCTTCCCATCGCTCGT 62.515 66.667 0.00 0.00 0.00 4.18
1508 1525 2.050144 GGAGCTCCCCATTGTCATCTA 58.950 52.381 23.19 0.00 0.00 1.98
1901 1918 1.379044 AGGGCCAGCACATTAGCAC 60.379 57.895 6.18 0.00 36.85 4.40
1912 1929 1.903404 GAACCACAACCAGGGCCAG 60.903 63.158 6.18 0.00 0.00 4.85
1939 1956 3.999663 ACTTCAGAAGTACAAGCTGCATC 59.000 43.478 14.58 0.00 40.69 3.91
1956 1973 1.691976 ACATCGGTGACCTGAACTTCA 59.308 47.619 0.65 0.00 0.00 3.02
2263 2280 1.594331 AGTTGACGTCCAGAAAAGCC 58.406 50.000 14.12 0.00 0.00 4.35
2293 2310 0.179124 TTTGTTGGCCGCTTTCACAC 60.179 50.000 0.00 0.00 0.00 3.82
2338 2355 0.833287 CCAGGGTACACCATCCTCAG 59.167 60.000 0.00 0.00 43.89 3.35
2434 2451 4.369591 ATGGACCCTCCCAGGCCA 62.370 66.667 5.01 0.00 39.97 5.36
2482 2499 0.962489 ACAGTGTTCGTCCTGAGAGG 59.038 55.000 0.00 0.00 36.46 3.69
2535 2552 6.956202 ATCCATCAAGCAATCTCTAAAAGG 57.044 37.500 0.00 0.00 0.00 3.11
2629 2646 3.119955 CCTATCGAGACGACACTTGACAA 60.120 47.826 0.00 0.00 39.18 3.18
2829 2846 7.100409 GCATTCTCTAGAGTTTCCTTGTAGTT 58.900 38.462 19.21 0.00 0.00 2.24
3010 3027 1.524482 GAAGGAGAAGGAGGCGCAT 59.476 57.895 10.83 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.