Multiple sequence alignment - TraesCS4B01G192900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G192900 chr4B 100.000 3259 0 0 1 3259 416153415 416150157 0.000000e+00 6019
1 TraesCS4B01G192900 chr4B 91.780 1472 84 12 1792 3250 500131251 500129804 0.000000e+00 2013
2 TraesCS4B01G192900 chr4B 93.869 995 48 9 1579 2566 574697224 574698212 0.000000e+00 1487
3 TraesCS4B01G192900 chr4B 88.775 1069 79 20 628 1685 500132356 500131318 0.000000e+00 1271
4 TraesCS4B01G192900 chr4B 93.029 373 22 3 1579 1947 574696722 574697094 2.860000e-150 542
5 TraesCS4B01G192900 chr2A 90.482 2490 188 26 663 3115 171604278 171601801 0.000000e+00 3240
6 TraesCS4B01G192900 chr2A 88.633 2472 177 56 628 3059 385508392 385505985 0.000000e+00 2913
7 TraesCS4B01G192900 chr2A 86.869 198 14 2 3056 3253 385505910 385505725 9.160000e-51 211
8 TraesCS4B01G192900 chr2A 90.517 116 6 2 3144 3259 171488285 171488175 7.290000e-32 148
9 TraesCS4B01G192900 chr3D 88.323 2672 186 72 663 3259 506881439 506884059 0.000000e+00 3090
10 TraesCS4B01G192900 chr3D 89.649 1565 103 36 1639 3171 578223369 578224906 0.000000e+00 1938
11 TraesCS4B01G192900 chr3D 89.884 949 69 13 628 1562 578222310 578223245 0.000000e+00 1195
12 TraesCS4B01G192900 chr3D 86.055 1133 102 29 619 1732 590695297 590694202 0.000000e+00 1166
13 TraesCS4B01G192900 chr3D 83.548 1319 123 48 627 1917 30785662 30786914 0.000000e+00 1147
14 TraesCS4B01G192900 chr3D 86.456 443 36 16 1785 2210 590694213 590693778 6.370000e-127 464
15 TraesCS4B01G192900 chr3D 87.342 237 18 5 1639 1863 184627378 184627614 8.970000e-66 261
16 TraesCS4B01G192900 chr3D 79.290 169 23 6 3092 3259 590684356 590684199 1.240000e-19 108
17 TraesCS4B01G192900 chr3A 87.691 2689 208 65 628 3259 679514476 679517098 0.000000e+00 3018
18 TraesCS4B01G192900 chr3A 88.790 2480 176 58 628 3059 209658283 209660708 0.000000e+00 2946
19 TraesCS4B01G192900 chr4D 90.073 2337 152 49 768 3059 346121079 346118778 0.000000e+00 2957
20 TraesCS4B01G192900 chr4D 87.758 1405 121 36 1785 3152 7013675 7012285 0.000000e+00 1594
21 TraesCS4B01G192900 chr4D 89.715 1264 96 22 1785 3026 61990616 61991867 0.000000e+00 1583
22 TraesCS4B01G192900 chr4D 89.107 1276 103 22 1775 3026 481099232 481100495 0.000000e+00 1554
23 TraesCS4B01G192900 chr4D 84.133 1147 107 34 628 1732 201441688 201442801 0.000000e+00 1040
24 TraesCS4B01G192900 chr4D 93.250 563 16 9 1 562 337059698 337059157 0.000000e+00 809
25 TraesCS4B01G192900 chr4D 84.314 204 12 9 3056 3259 346118726 346118543 7.180000e-42 182
26 TraesCS4B01G192900 chr5B 86.299 2591 229 70 628 3152 544518570 544516040 0.000000e+00 2702
27 TraesCS4B01G192900 chr5B 86.157 1033 112 18 628 1643 517888017 517886999 0.000000e+00 1086
28 TraesCS4B01G192900 chr5B 92.121 330 16 4 1792 2111 457020054 457020383 1.070000e-124 457
29 TraesCS4B01G192900 chr5B 86.256 211 15 4 3049 3259 526167855 526168051 1.970000e-52 217
30 TraesCS4B01G192900 chr2D 93.016 1303 64 9 1880 3171 615871102 615869816 0.000000e+00 1877
31 TraesCS4B01G192900 chr2D 89.130 1058 85 21 680 1732 615872233 615871201 0.000000e+00 1290
32 TraesCS4B01G192900 chr2D 87.151 1004 95 17 629 1615 96612569 96611583 0.000000e+00 1109
33 TraesCS4B01G192900 chr2D 91.192 386 27 5 1693 2073 96589344 96588961 4.820000e-143 518
34 TraesCS4B01G192900 chr1D 89.972 1426 93 28 1785 3169 348027759 348026343 0.000000e+00 1796
35 TraesCS4B01G192900 chr1D 85.741 1052 93 28 713 1732 348028774 348027748 0.000000e+00 1059
36 TraesCS4B01G192900 chr5D 89.873 1264 96 18 1785 3026 38199862 38201115 0.000000e+00 1596
37 TraesCS4B01G192900 chr5D 89.874 1195 90 20 1785 2957 473112687 473111502 0.000000e+00 1507
38 TraesCS4B01G192900 chr7D 87.339 1240 99 29 666 1863 290912560 290911337 0.000000e+00 1367
39 TraesCS4B01G192900 chr7D 89.979 948 55 10 2340 3259 290899012 290898077 0.000000e+00 1188
40 TraesCS4B01G192900 chr7D 88.830 949 79 13 628 1562 53443705 53444640 0.000000e+00 1140
41 TraesCS4B01G192900 chr7D 88.608 948 79 14 628 1562 623788988 623788057 0.000000e+00 1125
42 TraesCS4B01G192900 chr7D 89.030 237 14 5 1639 1863 53444764 53445000 1.910000e-72 283
43 TraesCS4B01G192900 chr7D 88.186 237 16 5 1639 1863 623787933 623787697 4.140000e-69 272
44 TraesCS4B01G192900 chr7D 84.804 204 19 4 3056 3259 627425182 627424991 9.230000e-46 195
45 TraesCS4B01G192900 chr4A 86.625 1286 109 34 628 1863 177648077 177649349 0.000000e+00 1363
46 TraesCS4B01G192900 chr4A 92.955 582 21 7 1 563 136246749 136247329 0.000000e+00 830
47 TraesCS4B01G192900 chr4A 84.834 211 18 4 3049 3259 177650605 177650801 1.980000e-47 200
48 TraesCS4B01G192900 chr7A 86.262 1252 114 34 663 1864 21449096 21450339 0.000000e+00 1306
49 TraesCS4B01G192900 chr7A 85.103 1121 115 27 628 1732 89627229 89626145 0.000000e+00 1098
50 TraesCS4B01G192900 chr7A 87.696 959 65 31 952 1863 604956776 604955824 0.000000e+00 1068
51 TraesCS4B01G192900 chr1B 88.658 626 40 18 2655 3250 643970608 643971232 0.000000e+00 734
52 TraesCS4B01G192900 chr1B 89.937 159 16 0 3092 3250 644086278 644086436 4.260000e-49 206
53 TraesCS4B01G192900 chr6A 86.498 237 20 7 1639 1863 431038493 431038729 1.940000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G192900 chr4B 416150157 416153415 3258 True 6019.0 6019 100.0000 1 3259 1 chr4B.!!$R1 3258
1 TraesCS4B01G192900 chr4B 500129804 500132356 2552 True 1642.0 2013 90.2775 628 3250 2 chr4B.!!$R2 2622
2 TraesCS4B01G192900 chr4B 574696722 574698212 1490 False 1014.5 1487 93.4490 1579 2566 2 chr4B.!!$F1 987
3 TraesCS4B01G192900 chr2A 171601801 171604278 2477 True 3240.0 3240 90.4820 663 3115 1 chr2A.!!$R2 2452
4 TraesCS4B01G192900 chr2A 385505725 385508392 2667 True 1562.0 2913 87.7510 628 3253 2 chr2A.!!$R3 2625
5 TraesCS4B01G192900 chr3D 506881439 506884059 2620 False 3090.0 3090 88.3230 663 3259 1 chr3D.!!$F3 2596
6 TraesCS4B01G192900 chr3D 578222310 578224906 2596 False 1566.5 1938 89.7665 628 3171 2 chr3D.!!$F4 2543
7 TraesCS4B01G192900 chr3D 30785662 30786914 1252 False 1147.0 1147 83.5480 627 1917 1 chr3D.!!$F1 1290
8 TraesCS4B01G192900 chr3D 590693778 590695297 1519 True 815.0 1166 86.2555 619 2210 2 chr3D.!!$R2 1591
9 TraesCS4B01G192900 chr3A 679514476 679517098 2622 False 3018.0 3018 87.6910 628 3259 1 chr3A.!!$F2 2631
10 TraesCS4B01G192900 chr3A 209658283 209660708 2425 False 2946.0 2946 88.7900 628 3059 1 chr3A.!!$F1 2431
11 TraesCS4B01G192900 chr4D 7012285 7013675 1390 True 1594.0 1594 87.7580 1785 3152 1 chr4D.!!$R1 1367
12 TraesCS4B01G192900 chr4D 61990616 61991867 1251 False 1583.0 1583 89.7150 1785 3026 1 chr4D.!!$F1 1241
13 TraesCS4B01G192900 chr4D 346118543 346121079 2536 True 1569.5 2957 87.1935 768 3259 2 chr4D.!!$R3 2491
14 TraesCS4B01G192900 chr4D 481099232 481100495 1263 False 1554.0 1554 89.1070 1775 3026 1 chr4D.!!$F3 1251
15 TraesCS4B01G192900 chr4D 201441688 201442801 1113 False 1040.0 1040 84.1330 628 1732 1 chr4D.!!$F2 1104
16 TraesCS4B01G192900 chr4D 337059157 337059698 541 True 809.0 809 93.2500 1 562 1 chr4D.!!$R2 561
17 TraesCS4B01G192900 chr5B 544516040 544518570 2530 True 2702.0 2702 86.2990 628 3152 1 chr5B.!!$R2 2524
18 TraesCS4B01G192900 chr5B 517886999 517888017 1018 True 1086.0 1086 86.1570 628 1643 1 chr5B.!!$R1 1015
19 TraesCS4B01G192900 chr2D 615869816 615872233 2417 True 1583.5 1877 91.0730 680 3171 2 chr2D.!!$R3 2491
20 TraesCS4B01G192900 chr2D 96611583 96612569 986 True 1109.0 1109 87.1510 629 1615 1 chr2D.!!$R2 986
21 TraesCS4B01G192900 chr1D 348026343 348028774 2431 True 1427.5 1796 87.8565 713 3169 2 chr1D.!!$R1 2456
22 TraesCS4B01G192900 chr5D 38199862 38201115 1253 False 1596.0 1596 89.8730 1785 3026 1 chr5D.!!$F1 1241
23 TraesCS4B01G192900 chr5D 473111502 473112687 1185 True 1507.0 1507 89.8740 1785 2957 1 chr5D.!!$R1 1172
24 TraesCS4B01G192900 chr7D 290911337 290912560 1223 True 1367.0 1367 87.3390 666 1863 1 chr7D.!!$R2 1197
25 TraesCS4B01G192900 chr7D 290898077 290899012 935 True 1188.0 1188 89.9790 2340 3259 1 chr7D.!!$R1 919
26 TraesCS4B01G192900 chr7D 53443705 53445000 1295 False 711.5 1140 88.9300 628 1863 2 chr7D.!!$F1 1235
27 TraesCS4B01G192900 chr7D 623787697 623788988 1291 True 698.5 1125 88.3970 628 1863 2 chr7D.!!$R4 1235
28 TraesCS4B01G192900 chr4A 136246749 136247329 580 False 830.0 830 92.9550 1 563 1 chr4A.!!$F1 562
29 TraesCS4B01G192900 chr4A 177648077 177650801 2724 False 781.5 1363 85.7295 628 3259 2 chr4A.!!$F2 2631
30 TraesCS4B01G192900 chr7A 21449096 21450339 1243 False 1306.0 1306 86.2620 663 1864 1 chr7A.!!$F1 1201
31 TraesCS4B01G192900 chr7A 89626145 89627229 1084 True 1098.0 1098 85.1030 628 1732 1 chr7A.!!$R1 1104
32 TraesCS4B01G192900 chr7A 604955824 604956776 952 True 1068.0 1068 87.6960 952 1863 1 chr7A.!!$R2 911
33 TraesCS4B01G192900 chr1B 643970608 643971232 624 False 734.0 734 88.6580 2655 3250 1 chr1B.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 657 0.029834 GCACAGAAGCACCACAACTG 59.970 55.0 0.0 0.0 35.14 3.16 F
660 662 0.312102 GAAGCACCACAACTGAAGGC 59.688 55.0 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 2649 1.167851 GCCATGTGCTAAGCAACAGA 58.832 50.000 0.0 0.0 41.47 3.41 R
2542 3224 2.165998 GCCTCACTCAGCAATTCCTTT 58.834 47.619 0.0 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
292 294 8.540388 TCATTGTCCAGAAGTAAAGCTATAGTT 58.460 33.333 0.84 0.00 0.00 2.24
295 297 8.079211 TGTCCAGAAGTAAAGCTATAGTTCAT 57.921 34.615 0.84 0.00 37.58 2.57
296 298 8.540388 TGTCCAGAAGTAAAGCTATAGTTCATT 58.460 33.333 0.84 0.00 37.58 2.57
297 299 8.821894 GTCCAGAAGTAAAGCTATAGTTCATTG 58.178 37.037 0.84 0.00 37.58 2.82
298 300 8.540388 TCCAGAAGTAAAGCTATAGTTCATTGT 58.460 33.333 0.84 0.00 37.58 2.71
299 301 8.607459 CCAGAAGTAAAGCTATAGTTCATTGTG 58.393 37.037 0.84 0.00 37.58 3.33
300 302 9.371136 CAGAAGTAAAGCTATAGTTCATTGTGA 57.629 33.333 0.84 0.00 37.58 3.58
301 303 9.944376 AGAAGTAAAGCTATAGTTCATTGTGAA 57.056 29.630 0.84 0.00 37.58 3.18
303 305 9.726438 AAGTAAAGCTATAGTTCATTGTGAAGT 57.274 29.630 0.84 5.47 42.26 3.01
304 306 9.372369 AGTAAAGCTATAGTTCATTGTGAAGTC 57.628 33.333 0.84 0.00 39.14 3.01
305 307 9.372369 GTAAAGCTATAGTTCATTGTGAAGTCT 57.628 33.333 0.84 0.00 39.14 3.24
306 308 7.840342 AAGCTATAGTTCATTGTGAAGTCTG 57.160 36.000 0.84 0.00 39.14 3.51
307 309 6.344500 AGCTATAGTTCATTGTGAAGTCTGG 58.656 40.000 0.84 0.00 39.14 3.86
308 310 5.007136 GCTATAGTTCATTGTGAAGTCTGGC 59.993 44.000 0.84 4.83 39.14 4.85
309 311 3.498774 AGTTCATTGTGAAGTCTGGCT 57.501 42.857 0.00 0.00 35.22 4.75
310 312 3.406764 AGTTCATTGTGAAGTCTGGCTC 58.593 45.455 0.00 0.00 35.22 4.70
311 313 3.141398 GTTCATTGTGAAGTCTGGCTCA 58.859 45.455 0.00 0.00 37.00 4.26
312 314 3.708403 TCATTGTGAAGTCTGGCTCAT 57.292 42.857 0.00 0.00 0.00 2.90
313 315 4.824479 TCATTGTGAAGTCTGGCTCATA 57.176 40.909 0.00 0.00 0.00 2.15
314 316 4.763073 TCATTGTGAAGTCTGGCTCATAG 58.237 43.478 0.00 0.00 0.00 2.23
315 317 4.467438 TCATTGTGAAGTCTGGCTCATAGA 59.533 41.667 0.00 0.00 0.00 1.98
316 318 5.129980 TCATTGTGAAGTCTGGCTCATAGAT 59.870 40.000 0.00 0.00 0.00 1.98
317 319 4.397481 TGTGAAGTCTGGCTCATAGATG 57.603 45.455 0.00 0.00 0.00 2.90
318 320 4.026052 TGTGAAGTCTGGCTCATAGATGA 58.974 43.478 0.00 0.00 35.16 2.92
319 321 4.652881 TGTGAAGTCTGGCTCATAGATGAT 59.347 41.667 0.00 0.00 36.02 2.45
320 322 5.221402 TGTGAAGTCTGGCTCATAGATGATC 60.221 44.000 0.00 0.00 36.02 2.92
321 323 4.282957 TGAAGTCTGGCTCATAGATGATCC 59.717 45.833 5.59 5.59 42.06 3.36
322 324 4.130719 AGTCTGGCTCATAGATGATCCT 57.869 45.455 12.39 0.00 42.18 3.24
323 325 5.268131 AGTCTGGCTCATAGATGATCCTA 57.732 43.478 12.39 0.55 42.18 2.94
324 326 5.263599 AGTCTGGCTCATAGATGATCCTAG 58.736 45.833 12.39 8.78 42.18 3.02
325 327 5.016173 GTCTGGCTCATAGATGATCCTAGT 58.984 45.833 12.39 0.00 42.18 2.57
326 328 5.480073 GTCTGGCTCATAGATGATCCTAGTT 59.520 44.000 12.39 0.00 42.18 2.24
327 329 6.014669 GTCTGGCTCATAGATGATCCTAGTTT 60.015 42.308 12.39 0.00 42.18 2.66
328 330 6.556495 TCTGGCTCATAGATGATCCTAGTTTT 59.444 38.462 12.39 0.00 42.18 2.43
329 331 6.528321 TGGCTCATAGATGATCCTAGTTTTG 58.472 40.000 12.39 0.00 42.18 2.44
330 332 6.327365 TGGCTCATAGATGATCCTAGTTTTGA 59.673 38.462 12.39 0.00 42.18 2.69
331 333 7.147497 TGGCTCATAGATGATCCTAGTTTTGAA 60.147 37.037 12.39 0.00 42.18 2.69
332 334 7.882271 GGCTCATAGATGATCCTAGTTTTGAAT 59.118 37.037 5.34 0.00 39.40 2.57
333 335 9.282569 GCTCATAGATGATCCTAGTTTTGAATT 57.717 33.333 0.00 0.00 36.02 2.17
338 340 7.550712 AGATGATCCTAGTTTTGAATTTTGGC 58.449 34.615 0.00 0.00 0.00 4.52
339 341 6.916360 TGATCCTAGTTTTGAATTTTGGCT 57.084 33.333 0.00 0.00 0.00 4.75
340 342 6.690530 TGATCCTAGTTTTGAATTTTGGCTG 58.309 36.000 0.00 0.00 0.00 4.85
341 343 5.467035 TCCTAGTTTTGAATTTTGGCTGG 57.533 39.130 0.00 0.00 0.00 4.85
342 344 3.996363 CCTAGTTTTGAATTTTGGCTGGC 59.004 43.478 0.00 0.00 0.00 4.85
343 345 2.482864 AGTTTTGAATTTTGGCTGGCG 58.517 42.857 0.00 0.00 0.00 5.69
344 346 2.102252 AGTTTTGAATTTTGGCTGGCGA 59.898 40.909 0.00 0.00 0.00 5.54
345 347 3.066380 GTTTTGAATTTTGGCTGGCGAT 58.934 40.909 0.00 0.00 0.00 4.58
346 348 2.367030 TTGAATTTTGGCTGGCGATG 57.633 45.000 0.00 0.00 0.00 3.84
347 349 1.255882 TGAATTTTGGCTGGCGATGT 58.744 45.000 0.00 0.00 0.00 3.06
348 350 2.441410 TGAATTTTGGCTGGCGATGTA 58.559 42.857 0.00 0.00 0.00 2.29
349 351 2.822561 TGAATTTTGGCTGGCGATGTAA 59.177 40.909 0.00 0.00 0.00 2.41
350 352 3.256879 TGAATTTTGGCTGGCGATGTAAA 59.743 39.130 0.00 0.00 0.00 2.01
351 353 3.508744 ATTTTGGCTGGCGATGTAAAG 57.491 42.857 0.00 0.00 0.00 1.85
352 354 1.173043 TTTGGCTGGCGATGTAAAGG 58.827 50.000 0.00 0.00 0.00 3.11
353 355 0.037590 TTGGCTGGCGATGTAAAGGT 59.962 50.000 0.00 0.00 0.00 3.50
354 356 0.037590 TGGCTGGCGATGTAAAGGTT 59.962 50.000 0.00 0.00 0.00 3.50
355 357 0.733150 GGCTGGCGATGTAAAGGTTC 59.267 55.000 0.00 0.00 0.00 3.62
356 358 0.373716 GCTGGCGATGTAAAGGTTCG 59.626 55.000 0.00 0.00 0.00 3.95
360 362 2.159467 GCGATGTAAAGGTTCGCTTG 57.841 50.000 9.08 0.00 45.01 4.01
361 363 1.202031 GCGATGTAAAGGTTCGCTTGG 60.202 52.381 9.08 0.00 45.01 3.61
362 364 1.396996 CGATGTAAAGGTTCGCTTGGG 59.603 52.381 0.00 0.00 0.00 4.12
363 365 1.743394 GATGTAAAGGTTCGCTTGGGG 59.257 52.381 0.00 0.00 0.00 4.96
364 366 0.891904 TGTAAAGGTTCGCTTGGGGC 60.892 55.000 0.00 0.00 37.64 5.80
365 367 0.891904 GTAAAGGTTCGCTTGGGGCA 60.892 55.000 0.00 0.00 41.91 5.36
366 368 0.178987 TAAAGGTTCGCTTGGGGCAA 60.179 50.000 0.00 0.00 41.91 4.52
367 369 0.831711 AAAGGTTCGCTTGGGGCAAT 60.832 50.000 0.00 0.00 41.91 3.56
368 370 1.250840 AAGGTTCGCTTGGGGCAATC 61.251 55.000 0.00 0.00 41.91 2.67
369 371 2.710902 GGTTCGCTTGGGGCAATCC 61.711 63.158 0.00 0.00 41.91 3.01
370 372 1.976474 GTTCGCTTGGGGCAATCCA 60.976 57.895 0.00 0.00 41.91 3.41
371 373 1.678635 TTCGCTTGGGGCAATCCAG 60.679 57.895 0.00 0.00 41.91 3.86
372 374 2.045045 CGCTTGGGGCAATCCAGA 60.045 61.111 0.00 0.00 41.91 3.86
373 375 1.454479 CGCTTGGGGCAATCCAGAT 60.454 57.895 0.00 0.00 41.91 2.90
374 376 1.731433 CGCTTGGGGCAATCCAGATG 61.731 60.000 0.00 0.00 41.91 2.90
375 377 1.397390 GCTTGGGGCAATCCAGATGG 61.397 60.000 0.00 0.00 41.35 3.51
376 378 3.766689 GCTTGGGGCAATCCAGATGGA 62.767 57.143 3.57 3.57 44.23 3.41
390 392 5.757988 TCCAGATGGATTCATTCATGTTCA 58.242 37.500 0.00 0.00 39.78 3.18
391 393 5.826208 TCCAGATGGATTCATTCATGTTCAG 59.174 40.000 0.00 0.00 39.78 3.02
392 394 5.507482 CCAGATGGATTCATTCATGTTCAGC 60.507 44.000 0.00 0.00 37.39 4.26
393 395 5.299531 CAGATGGATTCATTCATGTTCAGCT 59.700 40.000 0.00 0.00 32.98 4.24
394 396 4.976224 TGGATTCATTCATGTTCAGCTG 57.024 40.909 7.63 7.63 0.00 4.24
395 397 4.591929 TGGATTCATTCATGTTCAGCTGA 58.408 39.130 13.74 13.74 0.00 4.26
396 398 5.011586 TGGATTCATTCATGTTCAGCTGAA 58.988 37.500 25.16 25.16 35.95 3.02
397 399 8.153963 GATGGATTCATTCATGTTCAGCTGAAC 61.154 40.741 40.34 40.34 42.81 3.18
409 411 5.833406 TTCAGCTGAACTTGTTCATTCAA 57.167 34.783 25.16 0.00 34.52 2.69
410 412 5.428496 TCAGCTGAACTTGTTCATTCAAG 57.572 39.130 15.67 6.10 46.89 3.02
411 413 5.125356 TCAGCTGAACTTGTTCATTCAAGA 58.875 37.500 15.67 10.09 45.11 3.02
412 414 5.766670 TCAGCTGAACTTGTTCATTCAAGAT 59.233 36.000 15.67 1.45 45.11 2.40
413 415 6.263842 TCAGCTGAACTTGTTCATTCAAGATT 59.736 34.615 15.67 4.41 45.11 2.40
414 416 6.921857 CAGCTGAACTTGTTCATTCAAGATTT 59.078 34.615 8.42 0.00 45.11 2.17
415 417 8.077991 CAGCTGAACTTGTTCATTCAAGATTTA 58.922 33.333 8.42 1.72 45.11 1.40
416 418 8.078596 AGCTGAACTTGTTCATTCAAGATTTAC 58.921 33.333 15.35 1.22 45.11 2.01
417 419 7.862372 GCTGAACTTGTTCATTCAAGATTTACA 59.138 33.333 15.35 5.21 45.11 2.41
418 420 9.903682 CTGAACTTGTTCATTCAAGATTTACAT 57.096 29.630 15.35 0.00 45.11 2.29
419 421 9.681692 TGAACTTGTTCATTCAAGATTTACATG 57.318 29.630 11.62 0.00 45.11 3.21
420 422 9.683069 GAACTTGTTCATTCAAGATTTACATGT 57.317 29.630 2.69 2.69 45.11 3.21
425 427 9.891828 TGTTCATTCAAGATTTACATGTAACAC 57.108 29.630 17.85 13.89 0.00 3.32
426 428 9.341899 GTTCATTCAAGATTTACATGTAACACC 57.658 33.333 17.85 9.79 0.00 4.16
427 429 8.628630 TCATTCAAGATTTACATGTAACACCA 57.371 30.769 17.85 4.01 0.00 4.17
428 430 8.511321 TCATTCAAGATTTACATGTAACACCAC 58.489 33.333 17.85 7.88 0.00 4.16
429 431 7.809546 TTCAAGATTTACATGTAACACCACA 57.190 32.000 17.85 2.89 0.00 4.17
430 432 7.433708 TCAAGATTTACATGTAACACCACAG 57.566 36.000 17.85 5.73 0.00 3.66
431 433 7.220740 TCAAGATTTACATGTAACACCACAGA 58.779 34.615 17.85 7.77 0.00 3.41
432 434 7.882791 TCAAGATTTACATGTAACACCACAGAT 59.117 33.333 17.85 6.35 0.00 2.90
433 435 8.514594 CAAGATTTACATGTAACACCACAGATT 58.485 33.333 17.85 2.60 0.00 2.40
434 436 8.268850 AGATTTACATGTAACACCACAGATTC 57.731 34.615 17.85 0.88 0.00 2.52
435 437 7.882791 AGATTTACATGTAACACCACAGATTCA 59.117 33.333 17.85 0.00 0.00 2.57
436 438 7.433708 TTTACATGTAACACCACAGATTCAG 57.566 36.000 17.85 0.00 0.00 3.02
437 439 4.973168 ACATGTAACACCACAGATTCAGT 58.027 39.130 0.00 0.00 0.00 3.41
438 440 5.376625 ACATGTAACACCACAGATTCAGTT 58.623 37.500 0.00 0.00 0.00 3.16
439 441 5.827797 ACATGTAACACCACAGATTCAGTTT 59.172 36.000 0.00 0.00 0.00 2.66
440 442 6.995686 ACATGTAACACCACAGATTCAGTTTA 59.004 34.615 0.00 0.00 0.00 2.01
441 443 7.665559 ACATGTAACACCACAGATTCAGTTTAT 59.334 33.333 0.00 0.00 0.00 1.40
442 444 9.161629 CATGTAACACCACAGATTCAGTTTATA 57.838 33.333 0.00 0.00 0.00 0.98
443 445 9.733556 ATGTAACACCACAGATTCAGTTTATAA 57.266 29.630 0.00 0.00 0.00 0.98
444 446 9.733556 TGTAACACCACAGATTCAGTTTATAAT 57.266 29.630 0.00 0.00 0.00 1.28
445 447 9.988350 GTAACACCACAGATTCAGTTTATAATG 57.012 33.333 0.00 0.00 0.00 1.90
446 448 7.088589 ACACCACAGATTCAGTTTATAATGC 57.911 36.000 0.00 0.00 0.00 3.56
447 449 6.095440 ACACCACAGATTCAGTTTATAATGCC 59.905 38.462 0.00 0.00 0.00 4.40
448 450 6.095300 CACCACAGATTCAGTTTATAATGCCA 59.905 38.462 0.00 0.00 0.00 4.92
449 451 6.319658 ACCACAGATTCAGTTTATAATGCCAG 59.680 38.462 0.00 0.00 0.00 4.85
450 452 6.238842 CCACAGATTCAGTTTATAATGCCAGG 60.239 42.308 0.00 0.00 0.00 4.45
451 453 6.543465 CACAGATTCAGTTTATAATGCCAGGA 59.457 38.462 0.00 0.00 0.00 3.86
452 454 7.230108 CACAGATTCAGTTTATAATGCCAGGAT 59.770 37.037 0.00 0.00 0.00 3.24
453 455 7.781693 ACAGATTCAGTTTATAATGCCAGGATT 59.218 33.333 0.00 0.00 0.00 3.01
454 456 8.636213 CAGATTCAGTTTATAATGCCAGGATTT 58.364 33.333 0.00 0.00 0.00 2.17
455 457 8.636213 AGATTCAGTTTATAATGCCAGGATTTG 58.364 33.333 0.00 0.00 0.00 2.32
460 462 7.869429 CAGTTTATAATGCCAGGATTTGGAATC 59.131 37.037 0.00 0.00 45.28 2.52
461 463 6.573664 TTATAATGCCAGGATTTGGAATCG 57.426 37.500 0.00 0.00 45.28 3.34
462 464 3.017048 AATGCCAGGATTTGGAATCGA 57.983 42.857 0.00 0.00 45.28 3.59
463 465 3.569491 AATGCCAGGATTTGGAATCGAT 58.431 40.909 0.00 0.00 45.28 3.59
464 466 3.571401 AATGCCAGGATTTGGAATCGATC 59.429 43.478 0.00 0.00 45.28 3.69
465 467 5.531096 AATGCCAGGATTTGGAATCGATCC 61.531 45.833 0.00 2.52 45.28 3.36
475 477 1.499049 GAATCGATCCAGGTAACCGC 58.501 55.000 0.00 0.00 37.17 5.68
476 478 0.249322 AATCGATCCAGGTAACCGCG 60.249 55.000 0.00 0.00 37.17 6.46
477 479 1.389609 ATCGATCCAGGTAACCGCGT 61.390 55.000 4.92 0.00 37.17 6.01
478 480 1.876714 CGATCCAGGTAACCGCGTG 60.877 63.158 4.92 0.00 37.17 5.34
479 481 1.520787 GATCCAGGTAACCGCGTGG 60.521 63.158 14.93 14.93 43.55 4.94
480 482 2.918230 GATCCAGGTAACCGCGTGGG 62.918 65.000 21.14 6.53 42.72 4.61
502 504 3.900388 GTGGATACGCTACCTAGTCTG 57.100 52.381 0.00 0.00 46.04 3.51
503 505 3.474600 GTGGATACGCTACCTAGTCTGA 58.525 50.000 0.00 0.00 46.04 3.27
504 506 3.881688 GTGGATACGCTACCTAGTCTGAA 59.118 47.826 0.00 0.00 46.04 3.02
505 507 4.519730 GTGGATACGCTACCTAGTCTGAAT 59.480 45.833 0.00 0.00 46.04 2.57
506 508 5.009811 GTGGATACGCTACCTAGTCTGAATT 59.990 44.000 0.00 0.00 46.04 2.17
507 509 5.597182 TGGATACGCTACCTAGTCTGAATTT 59.403 40.000 0.00 0.00 42.51 1.82
508 510 6.151004 GGATACGCTACCTAGTCTGAATTTC 58.849 44.000 0.00 0.00 0.00 2.17
509 511 6.238953 GGATACGCTACCTAGTCTGAATTTCA 60.239 42.308 0.00 0.00 0.00 2.69
510 512 5.000012 ACGCTACCTAGTCTGAATTTCAG 58.000 43.478 18.49 18.49 45.59 3.02
511 513 3.799420 CGCTACCTAGTCTGAATTTCAGC 59.201 47.826 19.53 14.70 43.95 4.26
512 514 4.440802 CGCTACCTAGTCTGAATTTCAGCT 60.441 45.833 19.53 19.73 43.95 4.24
513 515 5.423886 GCTACCTAGTCTGAATTTCAGCTT 58.576 41.667 19.53 12.78 43.95 3.74
514 516 5.877564 GCTACCTAGTCTGAATTTCAGCTTT 59.122 40.000 19.53 10.69 43.95 3.51
515 517 6.183360 GCTACCTAGTCTGAATTTCAGCTTTG 60.183 42.308 19.53 15.04 43.95 2.77
516 518 5.625150 ACCTAGTCTGAATTTCAGCTTTGT 58.375 37.500 19.53 15.50 43.95 2.83
517 519 5.471456 ACCTAGTCTGAATTTCAGCTTTGTG 59.529 40.000 19.53 9.76 43.95 3.33
518 520 5.702670 CCTAGTCTGAATTTCAGCTTTGTGA 59.297 40.000 19.53 0.45 43.95 3.58
519 521 6.205464 CCTAGTCTGAATTTCAGCTTTGTGAA 59.795 38.462 19.53 0.00 43.95 3.18
531 533 6.620678 TCAGCTTTGTGAAATATAAACTGGC 58.379 36.000 0.00 0.00 0.00 4.85
532 534 6.434028 TCAGCTTTGTGAAATATAAACTGGCT 59.566 34.615 0.00 0.00 0.00 4.75
533 535 7.609918 TCAGCTTTGTGAAATATAAACTGGCTA 59.390 33.333 0.00 0.00 0.00 3.93
534 536 8.408601 CAGCTTTGTGAAATATAAACTGGCTAT 58.591 33.333 0.00 0.00 0.00 2.97
535 537 9.627123 AGCTTTGTGAAATATAAACTGGCTATA 57.373 29.630 0.00 0.00 0.00 1.31
540 542 9.845740 TGTGAAATATAAACTGGCTATATGTGT 57.154 29.630 0.00 0.00 0.00 3.72
543 545 9.612620 GAAATATAAACTGGCTATATGTGTTGC 57.387 33.333 0.00 0.00 0.00 4.17
544 546 8.924511 AATATAAACTGGCTATATGTGTTGCT 57.075 30.769 0.00 0.00 0.00 3.91
545 547 4.970662 AAACTGGCTATATGTGTTGCTG 57.029 40.909 0.00 0.00 0.00 4.41
546 548 2.292267 ACTGGCTATATGTGTTGCTGC 58.708 47.619 0.00 0.00 0.00 5.25
547 549 1.262417 CTGGCTATATGTGTTGCTGCG 59.738 52.381 0.00 0.00 0.00 5.18
548 550 1.299541 GGCTATATGTGTTGCTGCGT 58.700 50.000 0.00 0.00 0.00 5.24
549 551 2.159028 TGGCTATATGTGTTGCTGCGTA 60.159 45.455 0.00 0.00 0.00 4.42
550 552 3.067106 GGCTATATGTGTTGCTGCGTAT 58.933 45.455 0.00 0.00 0.00 3.06
551 553 3.498397 GGCTATATGTGTTGCTGCGTATT 59.502 43.478 0.00 0.00 0.00 1.89
552 554 4.024048 GGCTATATGTGTTGCTGCGTATTT 60.024 41.667 0.00 0.00 0.00 1.40
553 555 5.140177 GCTATATGTGTTGCTGCGTATTTC 58.860 41.667 0.00 0.00 0.00 2.17
554 556 2.525750 ATGTGTTGCTGCGTATTTCG 57.474 45.000 0.00 0.00 43.12 3.46
555 557 0.515127 TGTGTTGCTGCGTATTTCGG 59.485 50.000 0.00 0.00 40.26 4.30
556 558 0.793104 GTGTTGCTGCGTATTTCGGC 60.793 55.000 0.00 0.00 40.26 5.54
557 559 1.580132 GTTGCTGCGTATTTCGGCG 60.580 57.895 0.00 0.00 40.26 6.46
558 560 2.030401 TTGCTGCGTATTTCGGCGT 61.030 52.632 6.85 0.00 40.26 5.68
559 561 2.021380 GCTGCGTATTTCGGCGTG 59.979 61.111 6.85 0.00 40.26 5.34
560 562 2.736682 GCTGCGTATTTCGGCGTGT 61.737 57.895 6.85 0.00 40.26 4.49
561 563 1.415288 GCTGCGTATTTCGGCGTGTA 61.415 55.000 6.85 0.00 40.26 2.90
562 564 0.296642 CTGCGTATTTCGGCGTGTAC 59.703 55.000 6.85 7.80 40.26 2.90
563 565 1.267799 GCGTATTTCGGCGTGTACG 59.732 57.895 24.90 24.90 41.89 3.67
564 566 1.133363 GCGTATTTCGGCGTGTACGA 61.133 55.000 29.56 3.07 41.62 3.43
565 567 0.835740 CGTATTTCGGCGTGTACGAG 59.164 55.000 24.95 1.47 41.62 4.18
566 568 1.529622 CGTATTTCGGCGTGTACGAGA 60.530 52.381 24.95 3.92 41.62 4.04
567 569 2.107178 GTATTTCGGCGTGTACGAGAG 58.893 52.381 6.85 0.00 41.81 3.20
568 570 0.179145 ATTTCGGCGTGTACGAGAGG 60.179 55.000 6.85 0.00 41.81 3.69
569 571 2.807631 TTTCGGCGTGTACGAGAGGC 62.808 60.000 6.85 0.00 41.81 4.70
570 572 4.849329 CGGCGTGTACGAGAGGCC 62.849 72.222 8.82 0.00 43.02 5.19
571 573 4.849329 GGCGTGTACGAGAGGCCG 62.849 72.222 8.82 0.00 43.02 6.13
573 575 4.849329 CGTGTACGAGAGGCCGCC 62.849 72.222 1.49 0.00 43.02 6.13
574 576 4.849329 GTGTACGAGAGGCCGCCG 62.849 72.222 13.99 13.99 0.00 6.46
577 579 4.889112 TACGAGAGGCCGCCGGAT 62.889 66.667 7.68 0.00 0.00 4.18
580 582 4.292178 GAGAGGCCGCCGGATGAG 62.292 72.222 7.68 0.00 0.00 2.90
598 600 3.882025 CGCTCAGCAAACCTCTCC 58.118 61.111 0.00 0.00 0.00 3.71
599 601 1.294780 CGCTCAGCAAACCTCTCCT 59.705 57.895 0.00 0.00 0.00 3.69
600 602 0.321122 CGCTCAGCAAACCTCTCCTT 60.321 55.000 0.00 0.00 0.00 3.36
601 603 1.447945 GCTCAGCAAACCTCTCCTTC 58.552 55.000 0.00 0.00 0.00 3.46
602 604 1.948144 GCTCAGCAAACCTCTCCTTCC 60.948 57.143 0.00 0.00 0.00 3.46
603 605 0.693049 TCAGCAAACCTCTCCTTCCC 59.307 55.000 0.00 0.00 0.00 3.97
604 606 0.695347 CAGCAAACCTCTCCTTCCCT 59.305 55.000 0.00 0.00 0.00 4.20
605 607 0.695347 AGCAAACCTCTCCTTCCCTG 59.305 55.000 0.00 0.00 0.00 4.45
606 608 0.322906 GCAAACCTCTCCTTCCCTGG 60.323 60.000 0.00 0.00 0.00 4.45
607 609 0.322906 CAAACCTCTCCTTCCCTGGC 60.323 60.000 0.00 0.00 0.00 4.85
608 610 1.842381 AAACCTCTCCTTCCCTGGCG 61.842 60.000 0.00 0.00 0.00 5.69
609 611 2.685380 CCTCTCCTTCCCTGGCGT 60.685 66.667 0.00 0.00 0.00 5.68
610 612 2.581354 CTCTCCTTCCCTGGCGTG 59.419 66.667 0.00 0.00 0.00 5.34
611 613 3.003173 TCTCCTTCCCTGGCGTGG 61.003 66.667 0.00 0.00 0.00 4.94
612 614 3.322466 CTCCTTCCCTGGCGTGGT 61.322 66.667 0.00 0.00 0.00 4.16
613 615 1.987855 CTCCTTCCCTGGCGTGGTA 60.988 63.158 0.00 0.00 0.00 3.25
614 616 1.961180 CTCCTTCCCTGGCGTGGTAG 61.961 65.000 0.00 0.00 0.00 3.18
615 617 2.291043 CCTTCCCTGGCGTGGTAGT 61.291 63.158 0.00 0.00 0.00 2.73
616 618 1.218316 CTTCCCTGGCGTGGTAGTC 59.782 63.158 0.00 0.00 0.00 2.59
617 619 1.534476 TTCCCTGGCGTGGTAGTCA 60.534 57.895 0.00 0.00 0.00 3.41
618 620 1.541310 TTCCCTGGCGTGGTAGTCAG 61.541 60.000 0.00 0.00 43.04 3.51
619 621 2.125512 CCTGGCGTGGTAGTCAGC 60.126 66.667 0.00 0.00 42.14 4.26
622 624 2.184579 GGCGTGGTAGTCAGCCTC 59.815 66.667 0.00 0.00 45.67 4.70
623 625 2.202623 GCGTGGTAGTCAGCCTCG 60.203 66.667 0.00 0.00 43.35 4.63
624 626 2.490217 CGTGGTAGTCAGCCTCGG 59.510 66.667 0.00 0.00 38.76 4.63
625 627 2.893398 GTGGTAGTCAGCCTCGGG 59.107 66.667 0.00 0.00 0.00 5.14
645 647 3.366374 GGGTGAGTAAATTGCACAGAAGC 60.366 47.826 0.00 0.00 34.33 3.86
653 655 0.455410 TTGCACAGAAGCACCACAAC 59.545 50.000 0.00 0.00 45.61 3.32
654 656 0.394216 TGCACAGAAGCACCACAACT 60.394 50.000 0.00 0.00 40.11 3.16
655 657 0.029834 GCACAGAAGCACCACAACTG 59.970 55.000 0.00 0.00 35.14 3.16
656 658 1.667236 CACAGAAGCACCACAACTGA 58.333 50.000 0.00 0.00 33.53 3.41
657 659 2.016318 CACAGAAGCACCACAACTGAA 58.984 47.619 0.00 0.00 33.53 3.02
658 660 2.032550 CACAGAAGCACCACAACTGAAG 59.967 50.000 0.00 0.00 33.53 3.02
659 661 1.605710 CAGAAGCACCACAACTGAAGG 59.394 52.381 0.00 0.00 0.00 3.46
660 662 0.312102 GAAGCACCACAACTGAAGGC 59.688 55.000 0.00 0.00 0.00 4.35
661 663 0.395586 AAGCACCACAACTGAAGGCA 60.396 50.000 0.00 0.00 0.00 4.75
718 720 6.424509 TGGTAATTTTTACGTGTCTGTACCAG 59.575 38.462 0.00 0.00 34.89 4.00
856 883 3.062466 CTCACTCGGACGAGCCCA 61.062 66.667 20.46 4.89 45.54 5.36
910 953 1.678970 GCCAAACCCCGCTCATTCT 60.679 57.895 0.00 0.00 0.00 2.40
911 954 1.250840 GCCAAACCCCGCTCATTCTT 61.251 55.000 0.00 0.00 0.00 2.52
945 994 0.901124 TTCTTCCTGCTCTCTGCCTC 59.099 55.000 0.00 0.00 42.00 4.70
946 995 1.141449 CTTCCTGCTCTCTGCCTCG 59.859 63.158 0.00 0.00 42.00 4.63
947 996 2.904470 CTTCCTGCTCTCTGCCTCGC 62.904 65.000 0.00 0.00 42.00 5.03
1032 1087 0.457509 ACGAGAGCAGCGATGACAAG 60.458 55.000 4.02 0.00 0.00 3.16
1042 1097 1.941209 GCGATGACAAGTCAAGCCTCA 60.941 52.381 17.52 0.00 43.58 3.86
1114 1169 2.127708 CCATTGGAGCTAGGGTTAGGT 58.872 52.381 0.00 0.00 40.20 3.08
1119 1174 4.341863 TGGAGCTAGGGTTAGGTTTAGA 57.658 45.455 0.00 0.00 37.73 2.10
1122 1184 5.729718 TGGAGCTAGGGTTAGGTTTAGAAAT 59.270 40.000 0.00 0.00 37.73 2.17
1249 1324 2.050144 TGCCTTTCTCACTTGAGGACT 58.950 47.619 6.40 0.00 42.30 3.85
1276 1351 1.918957 ACAAGGGCCTTGAGCTAGATT 59.081 47.619 44.20 22.26 43.42 2.40
1366 1441 4.101114 TGGGAGAAGGTTCTTAGCATGTA 58.899 43.478 0.00 0.00 37.73 2.29
1523 1601 5.528690 TGCTCATTGTAGGAATGCTCAATAC 59.471 40.000 0.00 0.00 0.00 1.89
1681 2322 5.823570 GCTGACAGTAGGTAGTCTCATTAGA 59.176 44.000 3.99 0.00 35.81 2.10
1717 2358 7.041780 GCTGCATGCTAATGTAGTGTATTTAGT 60.042 37.037 20.33 0.00 45.43 2.24
1732 2373 7.769044 AGTGTATTTAGTTGGGCTAATGTAGTG 59.231 37.037 0.00 0.00 39.23 2.74
1733 2374 6.540914 TGTATTTAGTTGGGCTAATGTAGTGC 59.459 38.462 0.00 0.00 39.23 4.40
1801 2465 8.934697 AGTGATATAGGGCAAAGTAGTTCAATA 58.065 33.333 0.00 0.00 0.00 1.90
1947 2625 4.956085 TGATCACCCATTGTAGGATTACG 58.044 43.478 0.00 0.00 32.21 3.18
2008 2687 2.223782 GGCTGTGCAAATTCAGTGTTGA 60.224 45.455 4.22 0.00 34.57 3.18
2136 2818 2.025226 TGTGGGTTTGTTCAGTGGGTTA 60.025 45.455 0.00 0.00 0.00 2.85
2463 3145 6.915544 TGCAGTTATAGAGAAGCTTCAATG 57.084 37.500 27.57 15.72 0.00 2.82
2489 3171 0.179020 TGAACTCCTGTGCAACCTGG 60.179 55.000 0.00 0.00 34.36 4.45
2514 3196 0.445436 GCTCAAGCAACTGTCATCCG 59.555 55.000 0.00 0.00 41.59 4.18
2542 3224 8.924511 ACCTGAAGTTGAAGAATATGAAAGAA 57.075 30.769 0.00 0.00 0.00 2.52
2581 3263 5.428457 TGAGGCTAGGATGAATTTGGAGTTA 59.572 40.000 0.00 0.00 0.00 2.24
2615 3297 4.884164 AGTTCACAAAGTTTGAGGAGAAGG 59.116 41.667 22.23 1.81 0.00 3.46
2710 3394 3.190118 AGAAGCACATGCAAGAGCTTAAC 59.810 43.478 23.21 13.73 43.76 2.01
2718 3402 5.124457 ACATGCAAGAGCTTAACATTAGTGG 59.876 40.000 0.00 0.00 42.74 4.00
2825 3509 1.892474 GTGGGCATTGCAGACCTTTTA 59.108 47.619 11.39 0.00 0.00 1.52
2837 3521 2.242452 AGACCTTTTAGGAAGGATGGCC 59.758 50.000 11.52 0.00 37.67 5.36
2889 3573 7.372451 TGTTTGTGTAATGTATGGTTCTAGC 57.628 36.000 0.00 0.00 0.00 3.42
2895 3582 7.066887 TGTGTAATGTATGGTTCTAGCAATTGG 59.933 37.037 7.72 0.00 0.00 3.16
3008 3696 2.560542 TGAACAATGGTTGTGTATGCCC 59.439 45.455 0.00 0.00 44.59 5.36
3026 3714 2.097466 GCCCATAATGTGTTGAACTCCG 59.903 50.000 0.00 0.00 0.00 4.63
3028 3716 2.097466 CCATAATGTGTTGAACTCCGGC 59.903 50.000 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
178 179 7.358352 CCGAAAATTTATTTGTGCTGTCTGAAC 60.358 37.037 0.00 0.00 0.00 3.18
292 294 3.708403 ATGAGCCAGACTTCACAATGA 57.292 42.857 0.00 0.00 0.00 2.57
295 297 4.467438 TCATCTATGAGCCAGACTTCACAA 59.533 41.667 0.00 0.00 32.11 3.33
296 298 4.026052 TCATCTATGAGCCAGACTTCACA 58.974 43.478 0.00 0.00 32.11 3.58
297 299 4.662468 TCATCTATGAGCCAGACTTCAC 57.338 45.455 0.00 0.00 32.11 3.18
298 300 5.465532 GATCATCTATGAGCCAGACTTCA 57.534 43.478 0.00 0.00 40.64 3.02
307 309 8.845413 ATTCAAAACTAGGATCATCTATGAGC 57.155 34.615 0.00 0.00 42.17 4.26
312 314 8.686334 GCCAAAATTCAAAACTAGGATCATCTA 58.314 33.333 0.00 0.00 0.00 1.98
313 315 7.398332 AGCCAAAATTCAAAACTAGGATCATCT 59.602 33.333 0.00 0.00 0.00 2.90
314 316 7.490402 CAGCCAAAATTCAAAACTAGGATCATC 59.510 37.037 0.00 0.00 0.00 2.92
315 317 7.325694 CAGCCAAAATTCAAAACTAGGATCAT 58.674 34.615 0.00 0.00 0.00 2.45
316 318 6.295236 CCAGCCAAAATTCAAAACTAGGATCA 60.295 38.462 0.00 0.00 0.00 2.92
317 319 6.101997 CCAGCCAAAATTCAAAACTAGGATC 58.898 40.000 0.00 0.00 0.00 3.36
318 320 5.569428 GCCAGCCAAAATTCAAAACTAGGAT 60.569 40.000 0.00 0.00 0.00 3.24
319 321 4.262420 GCCAGCCAAAATTCAAAACTAGGA 60.262 41.667 0.00 0.00 0.00 2.94
320 322 3.996363 GCCAGCCAAAATTCAAAACTAGG 59.004 43.478 0.00 0.00 0.00 3.02
321 323 3.674753 CGCCAGCCAAAATTCAAAACTAG 59.325 43.478 0.00 0.00 0.00 2.57
322 324 3.319405 TCGCCAGCCAAAATTCAAAACTA 59.681 39.130 0.00 0.00 0.00 2.24
323 325 2.102252 TCGCCAGCCAAAATTCAAAACT 59.898 40.909 0.00 0.00 0.00 2.66
324 326 2.478831 TCGCCAGCCAAAATTCAAAAC 58.521 42.857 0.00 0.00 0.00 2.43
325 327 2.898729 TCGCCAGCCAAAATTCAAAA 57.101 40.000 0.00 0.00 0.00 2.44
326 328 2.036992 ACATCGCCAGCCAAAATTCAAA 59.963 40.909 0.00 0.00 0.00 2.69
327 329 1.617850 ACATCGCCAGCCAAAATTCAA 59.382 42.857 0.00 0.00 0.00 2.69
328 330 1.255882 ACATCGCCAGCCAAAATTCA 58.744 45.000 0.00 0.00 0.00 2.57
329 331 3.502191 TTACATCGCCAGCCAAAATTC 57.498 42.857 0.00 0.00 0.00 2.17
330 332 3.368323 CCTTTACATCGCCAGCCAAAATT 60.368 43.478 0.00 0.00 0.00 1.82
331 333 2.166254 CCTTTACATCGCCAGCCAAAAT 59.834 45.455 0.00 0.00 0.00 1.82
332 334 1.543802 CCTTTACATCGCCAGCCAAAA 59.456 47.619 0.00 0.00 0.00 2.44
333 335 1.173043 CCTTTACATCGCCAGCCAAA 58.827 50.000 0.00 0.00 0.00 3.28
334 336 0.037590 ACCTTTACATCGCCAGCCAA 59.962 50.000 0.00 0.00 0.00 4.52
335 337 0.037590 AACCTTTACATCGCCAGCCA 59.962 50.000 0.00 0.00 0.00 4.75
336 338 0.733150 GAACCTTTACATCGCCAGCC 59.267 55.000 0.00 0.00 0.00 4.85
337 339 0.373716 CGAACCTTTACATCGCCAGC 59.626 55.000 0.00 0.00 0.00 4.85
342 344 1.396996 CCCAAGCGAACCTTTACATCG 59.603 52.381 0.00 0.00 39.47 3.84
343 345 1.743394 CCCCAAGCGAACCTTTACATC 59.257 52.381 0.00 0.00 0.00 3.06
344 346 1.834188 CCCCAAGCGAACCTTTACAT 58.166 50.000 0.00 0.00 0.00 2.29
345 347 0.891904 GCCCCAAGCGAACCTTTACA 60.892 55.000 0.00 0.00 0.00 2.41
346 348 1.880894 GCCCCAAGCGAACCTTTAC 59.119 57.895 0.00 0.00 0.00 2.01
347 349 4.408378 GCCCCAAGCGAACCTTTA 57.592 55.556 0.00 0.00 0.00 1.85
356 358 1.397390 CCATCTGGATTGCCCCAAGC 61.397 60.000 0.00 0.00 38.91 4.01
357 359 0.259647 TCCATCTGGATTGCCCCAAG 59.740 55.000 0.00 0.00 39.78 3.61
358 360 2.407803 TCCATCTGGATTGCCCCAA 58.592 52.632 0.00 0.00 39.78 4.12
359 361 4.185153 TCCATCTGGATTGCCCCA 57.815 55.556 0.00 0.00 39.78 4.96
368 370 5.507482 GCTGAACATGAATGAATCCATCTGG 60.507 44.000 0.00 0.00 31.40 3.86
369 371 5.299531 AGCTGAACATGAATGAATCCATCTG 59.700 40.000 0.00 0.00 31.40 2.90
370 372 5.299531 CAGCTGAACATGAATGAATCCATCT 59.700 40.000 8.42 0.00 31.40 2.90
371 373 5.298527 TCAGCTGAACATGAATGAATCCATC 59.701 40.000 15.67 0.00 31.40 3.51
372 374 5.198207 TCAGCTGAACATGAATGAATCCAT 58.802 37.500 15.67 0.00 33.66 3.41
373 375 4.591929 TCAGCTGAACATGAATGAATCCA 58.408 39.130 15.67 0.00 0.00 3.41
374 376 5.571784 TTCAGCTGAACATGAATGAATCC 57.428 39.130 25.16 0.00 30.67 3.01
394 396 9.683069 ACATGTAAATCTTGAATGAACAAGTTC 57.317 29.630 0.00 6.01 44.96 3.01
399 401 9.891828 GTGTTACATGTAAATCTTGAATGAACA 57.108 29.630 19.63 8.65 0.00 3.18
400 402 9.341899 GGTGTTACATGTAAATCTTGAATGAAC 57.658 33.333 19.63 6.15 0.00 3.18
401 403 9.072375 TGGTGTTACATGTAAATCTTGAATGAA 57.928 29.630 19.63 0.00 0.00 2.57
402 404 8.511321 GTGGTGTTACATGTAAATCTTGAATGA 58.489 33.333 19.63 0.00 0.00 2.57
403 405 8.296000 TGTGGTGTTACATGTAAATCTTGAATG 58.704 33.333 19.63 0.00 0.00 2.67
404 406 8.402798 TGTGGTGTTACATGTAAATCTTGAAT 57.597 30.769 19.63 0.00 0.00 2.57
405 407 7.717436 TCTGTGGTGTTACATGTAAATCTTGAA 59.283 33.333 19.63 3.43 0.00 2.69
406 408 7.220740 TCTGTGGTGTTACATGTAAATCTTGA 58.779 34.615 19.63 9.58 0.00 3.02
407 409 7.433708 TCTGTGGTGTTACATGTAAATCTTG 57.566 36.000 19.63 7.65 0.00 3.02
408 410 8.635765 AATCTGTGGTGTTACATGTAAATCTT 57.364 30.769 19.63 3.50 0.00 2.40
409 411 7.882791 TGAATCTGTGGTGTTACATGTAAATCT 59.117 33.333 19.63 0.00 0.00 2.40
410 412 8.039603 TGAATCTGTGGTGTTACATGTAAATC 57.960 34.615 19.63 14.46 0.00 2.17
411 413 7.665559 ACTGAATCTGTGGTGTTACATGTAAAT 59.334 33.333 19.63 4.76 0.00 1.40
412 414 6.995686 ACTGAATCTGTGGTGTTACATGTAAA 59.004 34.615 19.63 7.93 0.00 2.01
413 415 6.530120 ACTGAATCTGTGGTGTTACATGTAA 58.470 36.000 14.35 14.35 0.00 2.41
414 416 6.109156 ACTGAATCTGTGGTGTTACATGTA 57.891 37.500 0.08 0.08 0.00 2.29
415 417 4.973168 ACTGAATCTGTGGTGTTACATGT 58.027 39.130 2.69 2.69 0.00 3.21
416 418 5.947228 AACTGAATCTGTGGTGTTACATG 57.053 39.130 0.00 0.00 0.00 3.21
417 419 9.733556 TTATAAACTGAATCTGTGGTGTTACAT 57.266 29.630 0.00 0.00 0.00 2.29
418 420 9.733556 ATTATAAACTGAATCTGTGGTGTTACA 57.266 29.630 0.00 0.00 0.00 2.41
419 421 9.988350 CATTATAAACTGAATCTGTGGTGTTAC 57.012 33.333 0.00 0.00 0.00 2.50
420 422 8.673711 GCATTATAAACTGAATCTGTGGTGTTA 58.326 33.333 0.00 0.00 0.00 2.41
421 423 7.362920 GGCATTATAAACTGAATCTGTGGTGTT 60.363 37.037 0.00 0.00 0.00 3.32
422 424 6.095440 GGCATTATAAACTGAATCTGTGGTGT 59.905 38.462 0.00 0.00 0.00 4.16
423 425 6.095300 TGGCATTATAAACTGAATCTGTGGTG 59.905 38.462 0.00 0.00 0.00 4.17
424 426 6.186957 TGGCATTATAAACTGAATCTGTGGT 58.813 36.000 0.00 0.00 0.00 4.16
425 427 6.238842 CCTGGCATTATAAACTGAATCTGTGG 60.239 42.308 0.00 0.00 0.00 4.17
426 428 6.543465 TCCTGGCATTATAAACTGAATCTGTG 59.457 38.462 0.00 0.00 0.00 3.66
427 429 6.662755 TCCTGGCATTATAAACTGAATCTGT 58.337 36.000 0.00 0.00 0.00 3.41
428 430 7.756395 ATCCTGGCATTATAAACTGAATCTG 57.244 36.000 0.00 0.00 0.00 2.90
429 431 8.636213 CAAATCCTGGCATTATAAACTGAATCT 58.364 33.333 0.00 0.00 0.00 2.40
430 432 7.869429 CCAAATCCTGGCATTATAAACTGAATC 59.131 37.037 0.00 0.00 38.76 2.52
431 433 7.564660 TCCAAATCCTGGCATTATAAACTGAAT 59.435 33.333 0.00 0.00 45.98 2.57
432 434 6.894654 TCCAAATCCTGGCATTATAAACTGAA 59.105 34.615 0.00 0.00 45.98 3.02
433 435 6.430864 TCCAAATCCTGGCATTATAAACTGA 58.569 36.000 0.00 0.00 45.98 3.41
434 436 6.713762 TCCAAATCCTGGCATTATAAACTG 57.286 37.500 0.00 0.00 45.98 3.16
435 437 7.255590 CGATTCCAAATCCTGGCATTATAAACT 60.256 37.037 0.00 0.00 45.98 2.66
436 438 6.863126 CGATTCCAAATCCTGGCATTATAAAC 59.137 38.462 0.00 0.00 45.98 2.01
437 439 6.775142 TCGATTCCAAATCCTGGCATTATAAA 59.225 34.615 0.00 0.00 45.98 1.40
438 440 6.303054 TCGATTCCAAATCCTGGCATTATAA 58.697 36.000 0.00 0.00 45.98 0.98
439 441 5.875224 TCGATTCCAAATCCTGGCATTATA 58.125 37.500 0.00 0.00 45.98 0.98
440 442 4.728772 TCGATTCCAAATCCTGGCATTAT 58.271 39.130 0.00 0.00 45.98 1.28
441 443 4.163441 TCGATTCCAAATCCTGGCATTA 57.837 40.909 0.00 0.00 45.98 1.90
442 444 3.017048 TCGATTCCAAATCCTGGCATT 57.983 42.857 0.00 0.00 45.98 3.56
443 445 2.734755 TCGATTCCAAATCCTGGCAT 57.265 45.000 0.00 0.00 45.98 4.40
444 446 2.575532 GATCGATTCCAAATCCTGGCA 58.424 47.619 0.00 0.00 45.98 4.92
445 447 1.882623 GGATCGATTCCAAATCCTGGC 59.117 52.381 0.00 0.00 45.98 4.85
455 457 1.872653 GCGGTTACCTGGATCGATTCC 60.873 57.143 0.00 4.18 45.69 3.01
456 458 1.499049 GCGGTTACCTGGATCGATTC 58.501 55.000 0.00 0.00 0.00 2.52
457 459 0.249322 CGCGGTTACCTGGATCGATT 60.249 55.000 0.00 0.00 0.00 3.34
458 460 1.362717 CGCGGTTACCTGGATCGAT 59.637 57.895 0.00 0.00 0.00 3.59
459 461 2.048023 ACGCGGTTACCTGGATCGA 61.048 57.895 12.47 0.00 0.00 3.59
460 462 1.876714 CACGCGGTTACCTGGATCG 60.877 63.158 12.47 0.00 0.00 3.69
461 463 1.520787 CCACGCGGTTACCTGGATC 60.521 63.158 12.47 0.00 0.00 3.36
462 464 2.582436 CCACGCGGTTACCTGGAT 59.418 61.111 12.47 0.00 0.00 3.41
463 465 3.697747 CCCACGCGGTTACCTGGA 61.698 66.667 12.47 0.00 0.00 3.86
482 484 3.474600 TCAGACTAGGTAGCGTATCCAC 58.525 50.000 0.00 0.00 0.00 4.02
483 485 3.851458 TCAGACTAGGTAGCGTATCCA 57.149 47.619 0.00 0.00 0.00 3.41
484 486 5.708877 AATTCAGACTAGGTAGCGTATCC 57.291 43.478 0.00 0.00 0.00 2.59
485 487 6.736123 TGAAATTCAGACTAGGTAGCGTATC 58.264 40.000 0.00 0.00 0.00 2.24
486 488 6.710597 TGAAATTCAGACTAGGTAGCGTAT 57.289 37.500 0.00 0.00 0.00 3.06
505 507 7.598493 GCCAGTTTATATTTCACAAAGCTGAAA 59.402 33.333 1.81 1.81 42.83 2.69
506 508 7.039784 AGCCAGTTTATATTTCACAAAGCTGAA 60.040 33.333 0.00 0.00 0.00 3.02
507 509 6.434028 AGCCAGTTTATATTTCACAAAGCTGA 59.566 34.615 0.00 0.00 0.00 4.26
508 510 6.624423 AGCCAGTTTATATTTCACAAAGCTG 58.376 36.000 0.00 0.00 0.00 4.24
509 511 6.840780 AGCCAGTTTATATTTCACAAAGCT 57.159 33.333 0.00 0.00 0.00 3.74
514 516 9.845740 ACACATATAGCCAGTTTATATTTCACA 57.154 29.630 0.00 0.00 0.00 3.58
517 519 9.612620 GCAACACATATAGCCAGTTTATATTTC 57.387 33.333 0.00 0.00 0.00 2.17
518 520 9.354673 AGCAACACATATAGCCAGTTTATATTT 57.645 29.630 0.00 0.00 0.00 1.40
519 521 8.786898 CAGCAACACATATAGCCAGTTTATATT 58.213 33.333 0.00 0.00 0.00 1.28
520 522 7.094634 GCAGCAACACATATAGCCAGTTTATAT 60.095 37.037 0.00 0.00 0.00 0.86
521 523 6.204688 GCAGCAACACATATAGCCAGTTTATA 59.795 38.462 0.00 0.00 0.00 0.98
522 524 5.009010 GCAGCAACACATATAGCCAGTTTAT 59.991 40.000 0.00 0.00 0.00 1.40
523 525 4.335315 GCAGCAACACATATAGCCAGTTTA 59.665 41.667 0.00 0.00 0.00 2.01
524 526 3.129287 GCAGCAACACATATAGCCAGTTT 59.871 43.478 0.00 0.00 0.00 2.66
525 527 2.684881 GCAGCAACACATATAGCCAGTT 59.315 45.455 0.00 0.00 0.00 3.16
526 528 2.292267 GCAGCAACACATATAGCCAGT 58.708 47.619 0.00 0.00 0.00 4.00
527 529 1.262417 CGCAGCAACACATATAGCCAG 59.738 52.381 0.00 0.00 0.00 4.85
528 530 1.298602 CGCAGCAACACATATAGCCA 58.701 50.000 0.00 0.00 0.00 4.75
529 531 1.299541 ACGCAGCAACACATATAGCC 58.700 50.000 0.00 0.00 0.00 3.93
530 532 4.732285 AATACGCAGCAACACATATAGC 57.268 40.909 0.00 0.00 0.00 2.97
531 533 5.365942 CGAAATACGCAGCAACACATATAG 58.634 41.667 0.00 0.00 34.51 1.31
532 534 4.210328 CCGAAATACGCAGCAACACATATA 59.790 41.667 0.00 0.00 41.07 0.86
533 535 3.002246 CCGAAATACGCAGCAACACATAT 59.998 43.478 0.00 0.00 41.07 1.78
534 536 2.350192 CCGAAATACGCAGCAACACATA 59.650 45.455 0.00 0.00 41.07 2.29
535 537 1.130373 CCGAAATACGCAGCAACACAT 59.870 47.619 0.00 0.00 41.07 3.21
536 538 0.515127 CCGAAATACGCAGCAACACA 59.485 50.000 0.00 0.00 41.07 3.72
537 539 0.793104 GCCGAAATACGCAGCAACAC 60.793 55.000 0.00 0.00 41.07 3.32
538 540 1.499949 GCCGAAATACGCAGCAACA 59.500 52.632 0.00 0.00 41.07 3.33
539 541 1.580132 CGCCGAAATACGCAGCAAC 60.580 57.895 0.00 0.00 41.07 4.17
540 542 2.030401 ACGCCGAAATACGCAGCAA 61.030 52.632 0.00 0.00 41.07 3.91
541 543 2.433491 ACGCCGAAATACGCAGCA 60.433 55.556 0.00 0.00 41.07 4.41
542 544 1.415288 TACACGCCGAAATACGCAGC 61.415 55.000 0.00 0.00 41.07 5.25
543 545 0.296642 GTACACGCCGAAATACGCAG 59.703 55.000 0.00 0.00 41.07 5.18
544 546 1.404720 CGTACACGCCGAAATACGCA 61.405 55.000 0.00 0.00 41.07 5.24
545 547 1.133363 TCGTACACGCCGAAATACGC 61.133 55.000 12.31 0.00 40.10 4.42
546 548 0.835740 CTCGTACACGCCGAAATACG 59.164 55.000 11.35 11.35 41.31 3.06
547 549 2.107178 CTCTCGTACACGCCGAAATAC 58.893 52.381 0.00 0.00 39.60 1.89
548 550 1.064505 CCTCTCGTACACGCCGAAATA 59.935 52.381 0.00 0.00 39.60 1.40
549 551 0.179145 CCTCTCGTACACGCCGAAAT 60.179 55.000 0.00 0.00 39.60 2.17
550 552 1.210931 CCTCTCGTACACGCCGAAA 59.789 57.895 0.00 0.00 39.60 3.46
551 553 2.872557 CCTCTCGTACACGCCGAA 59.127 61.111 0.00 0.00 39.60 4.30
552 554 3.807538 GCCTCTCGTACACGCCGA 61.808 66.667 0.00 0.00 39.60 5.54
553 555 4.849329 GGCCTCTCGTACACGCCG 62.849 72.222 0.00 0.00 39.60 6.46
554 556 4.849329 CGGCCTCTCGTACACGCC 62.849 72.222 0.00 0.00 39.60 5.68
556 558 4.849329 GGCGGCCTCTCGTACACG 62.849 72.222 12.87 0.00 41.45 4.49
557 559 4.849329 CGGCGGCCTCTCGTACAC 62.849 72.222 18.34 0.00 0.00 2.90
560 562 4.889112 ATCCGGCGGCCTCTCGTA 62.889 66.667 23.83 0.44 0.00 3.43
563 565 4.292178 CTCATCCGGCGGCCTCTC 62.292 72.222 23.83 0.00 0.00 3.20
572 574 4.519437 TGCTGAGCGCTCATCCGG 62.519 66.667 38.11 27.07 39.13 5.14
573 575 2.102438 TTTGCTGAGCGCTCATCCG 61.102 57.895 38.11 27.43 39.13 4.18
574 576 1.427020 GTTTGCTGAGCGCTCATCC 59.573 57.895 38.11 29.84 39.13 3.51
575 577 1.023513 AGGTTTGCTGAGCGCTCATC 61.024 55.000 38.11 33.53 39.13 2.92
576 578 1.002868 AGGTTTGCTGAGCGCTCAT 60.003 52.632 38.11 20.45 39.13 2.90
577 579 1.669115 GAGGTTTGCTGAGCGCTCA 60.669 57.895 35.97 35.97 40.11 4.26
578 580 1.357991 GAGAGGTTTGCTGAGCGCTC 61.358 60.000 30.42 30.42 40.11 5.03
579 581 1.375268 GAGAGGTTTGCTGAGCGCT 60.375 57.895 11.27 11.27 40.11 5.92
580 582 2.394563 GGAGAGGTTTGCTGAGCGC 61.395 63.158 0.00 0.00 39.77 5.92
581 583 0.321122 AAGGAGAGGTTTGCTGAGCG 60.321 55.000 0.00 0.00 0.00 5.03
582 584 1.447945 GAAGGAGAGGTTTGCTGAGC 58.552 55.000 0.00 0.00 0.00 4.26
583 585 1.339535 GGGAAGGAGAGGTTTGCTGAG 60.340 57.143 0.00 0.00 0.00 3.35
584 586 0.693049 GGGAAGGAGAGGTTTGCTGA 59.307 55.000 0.00 0.00 0.00 4.26
585 587 0.695347 AGGGAAGGAGAGGTTTGCTG 59.305 55.000 0.00 0.00 0.00 4.41
586 588 0.695347 CAGGGAAGGAGAGGTTTGCT 59.305 55.000 0.00 0.00 0.00 3.91
587 589 0.322906 CCAGGGAAGGAGAGGTTTGC 60.323 60.000 0.00 0.00 0.00 3.68
588 590 0.322906 GCCAGGGAAGGAGAGGTTTG 60.323 60.000 0.00 0.00 0.00 2.93
589 591 1.842381 CGCCAGGGAAGGAGAGGTTT 61.842 60.000 0.00 0.00 0.00 3.27
590 592 2.294078 CGCCAGGGAAGGAGAGGTT 61.294 63.158 0.00 0.00 0.00 3.50
591 593 2.685380 CGCCAGGGAAGGAGAGGT 60.685 66.667 0.00 0.00 0.00 3.85
592 594 2.685380 ACGCCAGGGAAGGAGAGG 60.685 66.667 0.00 0.00 32.29 3.69
593 595 2.581354 CACGCCAGGGAAGGAGAG 59.419 66.667 0.00 0.00 32.29 3.20
594 596 2.449967 TACCACGCCAGGGAAGGAGA 62.450 60.000 0.00 0.00 32.29 3.71
595 597 1.961180 CTACCACGCCAGGGAAGGAG 61.961 65.000 0.00 0.00 34.32 3.69
596 598 1.987855 CTACCACGCCAGGGAAGGA 60.988 63.158 0.00 0.00 0.00 3.36
597 599 2.240162 GACTACCACGCCAGGGAAGG 62.240 65.000 0.00 0.00 0.00 3.46
598 600 1.218316 GACTACCACGCCAGGGAAG 59.782 63.158 0.00 0.00 0.00 3.46
599 601 1.534476 TGACTACCACGCCAGGGAA 60.534 57.895 0.00 0.00 0.00 3.97
600 602 1.982395 CTGACTACCACGCCAGGGA 60.982 63.158 0.00 0.00 0.00 4.20
601 603 2.579201 CTGACTACCACGCCAGGG 59.421 66.667 0.00 0.00 0.00 4.45
602 604 2.125512 GCTGACTACCACGCCAGG 60.126 66.667 0.00 0.00 0.00 4.45
603 605 2.125512 GGCTGACTACCACGCCAG 60.126 66.667 0.00 0.00 38.28 4.85
604 606 2.603473 AGGCTGACTACCACGCCA 60.603 61.111 0.00 0.00 39.77 5.69
605 607 2.184579 GAGGCTGACTACCACGCC 59.815 66.667 0.00 0.00 38.51 5.68
606 608 2.202623 CGAGGCTGACTACCACGC 60.203 66.667 0.00 0.00 34.59 5.34
607 609 2.490217 CCGAGGCTGACTACCACG 59.510 66.667 0.00 0.00 40.42 4.94
608 610 1.982938 ACCCGAGGCTGACTACCAC 60.983 63.158 0.00 0.00 0.00 4.16
609 611 1.982395 CACCCGAGGCTGACTACCA 60.982 63.158 0.00 0.00 0.00 3.25
610 612 1.668101 CTCACCCGAGGCTGACTACC 61.668 65.000 0.00 0.00 35.44 3.18
611 613 0.966370 ACTCACCCGAGGCTGACTAC 60.966 60.000 0.00 0.00 44.17 2.73
612 614 0.622136 TACTCACCCGAGGCTGACTA 59.378 55.000 0.00 0.00 44.17 2.59
613 615 0.251653 TTACTCACCCGAGGCTGACT 60.252 55.000 0.00 0.00 44.17 3.41
614 616 0.606604 TTTACTCACCCGAGGCTGAC 59.393 55.000 0.00 0.00 44.17 3.51
615 617 1.568504 ATTTACTCACCCGAGGCTGA 58.431 50.000 0.00 0.00 44.17 4.26
616 618 2.009774 CAATTTACTCACCCGAGGCTG 58.990 52.381 0.00 0.00 44.17 4.85
617 619 1.679032 GCAATTTACTCACCCGAGGCT 60.679 52.381 0.00 0.00 44.17 4.58
618 620 0.733150 GCAATTTACTCACCCGAGGC 59.267 55.000 0.00 0.00 44.17 4.70
619 621 1.737793 GTGCAATTTACTCACCCGAGG 59.262 52.381 0.00 0.00 44.17 4.63
620 622 2.416547 CTGTGCAATTTACTCACCCGAG 59.583 50.000 0.00 0.00 45.49 4.63
621 623 2.037902 TCTGTGCAATTTACTCACCCGA 59.962 45.455 0.00 0.00 0.00 5.14
622 624 2.422597 TCTGTGCAATTTACTCACCCG 58.577 47.619 0.00 0.00 0.00 5.28
623 625 3.366374 GCTTCTGTGCAATTTACTCACCC 60.366 47.826 0.00 0.00 0.00 4.61
624 626 3.253188 TGCTTCTGTGCAATTTACTCACC 59.747 43.478 0.00 0.00 40.29 4.02
625 627 4.222114 GTGCTTCTGTGCAATTTACTCAC 58.778 43.478 0.00 0.00 45.12 3.51
645 647 0.599558 CCATGCCTTCAGTTGTGGTG 59.400 55.000 0.00 0.00 0.00 4.17
653 655 1.820581 CAATGCCCCATGCCTTCAG 59.179 57.895 0.00 0.00 40.16 3.02
654 656 2.360767 GCAATGCCCCATGCCTTCA 61.361 57.895 0.00 0.00 40.16 3.02
655 657 1.901654 TTGCAATGCCCCATGCCTTC 61.902 55.000 1.53 0.00 40.16 3.46
656 658 1.906105 CTTGCAATGCCCCATGCCTT 61.906 55.000 1.53 0.00 40.16 4.35
657 659 2.284773 TTGCAATGCCCCATGCCT 60.285 55.556 1.53 0.00 40.16 4.75
658 660 1.329171 TACTTGCAATGCCCCATGCC 61.329 55.000 1.53 0.00 40.16 4.40
659 661 0.103572 CTACTTGCAATGCCCCATGC 59.896 55.000 1.53 0.00 41.77 4.06
660 662 1.766494 TCTACTTGCAATGCCCCATG 58.234 50.000 1.53 0.00 0.00 3.66
661 663 2.696707 CAATCTACTTGCAATGCCCCAT 59.303 45.455 1.53 0.00 0.00 4.00
711 713 2.119484 CTCGCCCCAAACCTGGTACA 62.119 60.000 0.00 0.00 41.72 2.90
718 720 2.281276 AACGTCTCGCCCCAAACC 60.281 61.111 0.00 0.00 0.00 3.27
841 845 4.135153 CCTGGGCTCGTCCGAGTG 62.135 72.222 17.11 6.42 43.70 3.51
856 883 2.047560 GCCTAAACGGTGCGACCT 60.048 61.111 0.00 0.00 35.66 3.85
877 905 4.008933 GGCTCAGTCCGCACCAGT 62.009 66.667 0.00 0.00 0.00 4.00
910 953 1.079543 GAAGGCAGAGCAGAGCGAA 60.080 57.895 0.00 0.00 0.00 4.70
911 954 1.539560 AAGAAGGCAGAGCAGAGCGA 61.540 55.000 0.00 0.00 0.00 4.93
993 1048 1.707989 TCCTCCAAAACCATGGCTACA 59.292 47.619 13.04 0.00 40.46 2.74
1032 1087 2.080286 ACATGTACGTGAGGCTTGAC 57.920 50.000 21.82 0.00 0.00 3.18
1042 1097 2.821969 AGGTTTCGGAGTACATGTACGT 59.178 45.455 26.17 16.52 40.80 3.57
1114 1169 8.547069 CACAGAAAAATCGCCAAAATTTCTAAA 58.453 29.630 0.00 0.00 38.04 1.85
1119 1174 6.423604 CCTACACAGAAAAATCGCCAAAATTT 59.576 34.615 0.00 0.00 0.00 1.82
1122 1184 4.339814 ACCTACACAGAAAAATCGCCAAAA 59.660 37.500 0.00 0.00 0.00 2.44
1249 1324 1.209504 CTCAAGGCCCTTGTAATCCGA 59.790 52.381 22.46 1.03 41.66 4.55
1366 1441 2.488153 GCAAGAAAAATACCGGCTCTGT 59.512 45.455 0.00 0.00 0.00 3.41
1419 1497 2.542411 GCAAACAAGACTCTGCCACTTG 60.542 50.000 0.00 0.00 44.16 3.16
1445 1523 8.642908 TTTACCATAGACATAACTGAATCACG 57.357 34.615 0.00 0.00 0.00 4.35
1523 1601 6.320171 CAGAAATGCACTCCATTGAACTTAG 58.680 40.000 0.00 0.00 43.22 2.18
1605 1722 9.378551 CCACTAACTTAATATTGAGCAACACTA 57.621 33.333 7.13 0.00 0.00 2.74
1717 2358 4.027674 TCAAAGCACTACATTAGCCCAA 57.972 40.909 0.00 0.00 0.00 4.12
1732 2373 6.500684 TCACTGAATCAAGGTTATCAAAGC 57.499 37.500 0.00 0.00 0.00 3.51
1733 2374 8.048534 ACATCACTGAATCAAGGTTATCAAAG 57.951 34.615 0.00 0.00 0.00 2.77
1801 2465 4.225042 TGGAATCCTACAATGTGCACTACT 59.775 41.667 19.41 0.00 0.00 2.57
1970 2649 1.167851 GCCATGTGCTAAGCAACAGA 58.832 50.000 0.00 0.00 41.47 3.41
2008 2687 6.099701 TGGCAGTATCTAATGTTGGTACTGAT 59.900 38.462 15.64 0.00 42.90 2.90
2136 2818 2.855770 TTGGGGGCCACTGCTCATT 61.856 57.895 7.61 0.00 40.96 2.57
2162 2844 3.810941 ACCAAAGCTTCAACAATGCATTG 59.189 39.130 32.74 32.74 43.26 2.82
2269 2951 2.283145 AGTCTGCATCCAGCTTGTTT 57.717 45.000 0.00 0.00 45.94 2.83
2292 2974 5.181811 TGATGCACATCTTTCACTAACTTGG 59.818 40.000 11.66 0.00 38.60 3.61
2463 3145 3.334583 TGCACAGGAGTTCATACTTCC 57.665 47.619 0.00 0.00 33.84 3.46
2514 3196 7.687941 TTCATATTCTTCAACTTCAGGTTCC 57.312 36.000 0.00 0.00 35.74 3.62
2542 3224 2.165998 GCCTCACTCAGCAATTCCTTT 58.834 47.619 0.00 0.00 0.00 3.11
2581 3263 5.841957 ACTTTGTGAACTCTGCATTCTTT 57.158 34.783 0.00 0.00 0.00 2.52
2615 3297 2.829120 ACTCTAGCTTCTCTTGGGTGAC 59.171 50.000 0.00 0.00 30.02 3.67
2710 3394 1.952296 GCCTTCATGAGCCCACTAATG 59.048 52.381 0.00 0.00 36.21 1.90
2718 3402 0.179051 CTCCTCTGCCTTCATGAGCC 60.179 60.000 4.64 0.00 0.00 4.70
2825 3509 2.215451 ATTGCACGGCCATCCTTCCT 62.215 55.000 2.24 0.00 0.00 3.36
2837 3521 5.647589 TCTAAGTTACTAGGTCATTGCACG 58.352 41.667 0.00 0.00 0.00 5.34
2867 3551 7.987750 TTGCTAGAACCATACATTACACAAA 57.012 32.000 0.00 0.00 0.00 2.83
2889 3573 6.153340 ACATAAACATCCAGAGTTCCCAATTG 59.847 38.462 0.00 0.00 0.00 2.32
2895 3582 5.990668 AGGTACATAAACATCCAGAGTTCC 58.009 41.667 0.00 0.00 0.00 3.62
3008 3696 2.746904 TGCCGGAGTTCAACACATTATG 59.253 45.455 5.05 0.00 0.00 1.90
3028 3716 9.462174 TCTAACATTCAAAGCAAACAATACTTG 57.538 29.630 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.