Multiple sequence alignment - TraesCS4B01G192300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G192300 chr4B 100.000 5619 0 0 1 5619 415129287 415123669 0.000000e+00 10377.0
1 TraesCS4B01G192300 chr4A 92.829 5313 210 76 1 5205 136610606 136615855 0.000000e+00 7542.0
2 TraesCS4B01G192300 chr4A 91.860 86 2 1 5230 5310 136615853 136615938 1.280000e-21 115.0
3 TraesCS4B01G192300 chr4D 94.840 3314 120 24 1 3303 336848273 336845000 0.000000e+00 5125.0
4 TraesCS4B01G192300 chr4D 92.659 2016 85 22 3312 5310 336844956 336842987 0.000000e+00 2844.0
5 TraesCS4B01G192300 chr5D 82.958 311 24 16 5320 5619 530823147 530823439 2.600000e-63 254.0
6 TraesCS4B01G192300 chr2B 97.059 34 1 0 4981 5014 556508348 556508381 2.190000e-04 58.4
7 TraesCS4B01G192300 chr3B 100.000 29 0 0 5343 5371 74886067 74886039 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G192300 chr4B 415123669 415129287 5618 True 10377.0 10377 100.0000 1 5619 1 chr4B.!!$R1 5618
1 TraesCS4B01G192300 chr4A 136610606 136615938 5332 False 3828.5 7542 92.3445 1 5310 2 chr4A.!!$F1 5309
2 TraesCS4B01G192300 chr4D 336842987 336848273 5286 True 3984.5 5125 93.7495 1 5310 2 chr4D.!!$R1 5309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 990 0.179468 GTCTAATAACCCGGCAGCCA 59.821 55.0 13.30 0.0 0.00 4.75 F
2469 2494 0.391661 AAGGCCATGTGTACTCGCTG 60.392 55.0 5.01 0.0 0.00 5.18 F
2938 2963 0.679640 GGACATGGCGGATTGTTGGA 60.680 55.0 0.00 0.0 0.00 3.53 F
3749 3834 1.135094 CTGACACCCTCCAGGCATAT 58.865 55.0 0.00 0.0 40.58 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2826 2851 0.385751 TCGGATCCAGCGTCAAGATC 59.614 55.0 13.41 0.0 36.49 2.75 R
3679 3764 0.179189 CGTGGAAAATGAGAAGCGGC 60.179 55.0 0.00 0.0 0.00 6.53 R
4079 4164 0.475044 TGCCAGCCATCATATGCTCA 59.525 50.0 0.00 0.0 35.12 4.26 R
5453 5616 0.035458 AGTTCGAACTCCCTTGGCAG 59.965 55.0 24.93 0.0 32.86 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.160205 GGGTCAAACACTTTCCTAGCC 58.840 52.381 0.00 0.00 0.00 3.93
103 104 1.603739 GGTGTTGTCAAGGGAGCCC 60.604 63.158 0.00 0.00 0.00 5.19
113 114 3.761078 AGGGAGCCCTATGAGGTTT 57.239 52.632 6.21 0.00 46.14 3.27
129 132 2.171003 GGTTTTGTCTCCCCCAATCTG 58.829 52.381 0.00 0.00 0.00 2.90
132 135 1.741028 TTGTCTCCCCCAATCTGTCA 58.259 50.000 0.00 0.00 0.00 3.58
161 164 2.834549 TCTGGAGTTGTCTTCCATCCTC 59.165 50.000 0.00 0.00 32.54 3.71
180 184 1.691976 TCTTCACCGCCTTCTTCTTCA 59.308 47.619 0.00 0.00 0.00 3.02
199 203 5.491078 TCTTCAGGGGTGGTTATATGTTTCT 59.509 40.000 0.00 0.00 0.00 2.52
248 252 1.873903 GCTCTGACCAGCGAGTTTCAA 60.874 52.381 0.00 0.00 0.00 2.69
250 254 1.686587 TCTGACCAGCGAGTTTCAAGA 59.313 47.619 0.00 0.00 0.00 3.02
282 287 4.412207 GACAATATTTTCCCAGTTGCGAC 58.588 43.478 0.00 0.00 0.00 5.19
285 290 1.862602 ATTTTCCCAGTTGCGACGGC 61.863 55.000 8.87 0.00 40.52 5.68
298 303 2.356673 ACGGCGTTTCGGAGGTTC 60.357 61.111 6.77 0.00 0.00 3.62
316 321 3.699894 AGAGGTGGCACCGAGCTG 61.700 66.667 29.76 0.00 44.90 4.24
320 325 3.807538 GTGGCACCGAGCTGCATG 61.808 66.667 6.29 0.00 44.79 4.06
334 339 2.379634 GCATGCACGACACGCTGTA 61.380 57.895 14.21 0.00 33.76 2.74
340 345 1.002250 CACGACACGCTGTAGGTGAC 61.002 60.000 12.31 0.00 37.18 3.67
355 360 1.475034 GGTGACTGCAGGAAGAACACA 60.475 52.381 19.93 2.26 33.38 3.72
359 369 2.682856 GACTGCAGGAAGAACACAAACA 59.317 45.455 19.93 0.00 0.00 2.83
387 397 6.381498 TTCATCAAGGAAGGGTGTGTAATA 57.619 37.500 0.00 0.00 0.00 0.98
392 402 5.487488 TCAAGGAAGGGTGTGTAATATCAGT 59.513 40.000 0.00 0.00 0.00 3.41
438 449 5.129815 AGGGCTGGTCGACTTTAATATACAA 59.870 40.000 16.46 0.00 0.00 2.41
486 500 5.163416 ACTGTCTTTCCAAAGGAAACAATGG 60.163 40.000 7.11 0.00 45.42 3.16
520 535 2.108250 ACACCAGTCAACAGCCCTAAAT 59.892 45.455 0.00 0.00 0.00 1.40
571 586 7.748031 CACAAACTGTGCACTAATAACAAAA 57.252 32.000 19.41 0.00 41.89 2.44
602 617 8.594881 ACTGTTTGTGAAGAAGAATAGTACAG 57.405 34.615 0.00 0.00 35.48 2.74
603 618 8.204836 ACTGTTTGTGAAGAAGAATAGTACAGT 58.795 33.333 0.00 0.00 37.20 3.55
604 619 9.692749 CTGTTTGTGAAGAAGAATAGTACAGTA 57.307 33.333 0.00 0.00 0.00 2.74
646 661 3.502979 TGGGTCGGAGAAAAATTAAACGG 59.497 43.478 0.00 0.00 39.69 4.44
659 674 6.428083 AAATTAAACGGGAAGGTCCAATTT 57.572 33.333 0.00 0.00 38.64 1.82
705 720 1.966451 GTGGTGACAGCGGGAAAGG 60.966 63.158 0.00 0.00 44.46 3.11
971 990 0.179468 GTCTAATAACCCGGCAGCCA 59.821 55.000 13.30 0.00 0.00 4.75
1083 1102 2.678336 GCAAATCTACCCCTTCAACTCG 59.322 50.000 0.00 0.00 0.00 4.18
1086 1105 1.221021 CTACCCCTTCAACTCGGCC 59.779 63.158 0.00 0.00 0.00 6.13
1236 1255 0.907486 TCTCTTCCGACTCGACCCTA 59.093 55.000 0.00 0.00 0.00 3.53
1665 1684 3.208592 ACTCCACCTCCTCCCCCA 61.209 66.667 0.00 0.00 0.00 4.96
1722 1741 1.715585 CAACGCATCGATCGCCTTT 59.284 52.632 11.09 0.00 0.00 3.11
2176 2201 2.525629 TCCCCAAGTCGCTGTCCA 60.526 61.111 0.00 0.00 0.00 4.02
2343 2368 3.357079 CGGCTATGGGAATGCGCC 61.357 66.667 4.18 0.00 37.40 6.53
2415 2440 3.411351 GAGCGCGGCGAGTTCAAA 61.411 61.111 28.54 0.00 0.00 2.69
2469 2494 0.391661 AAGGCCATGTGTACTCGCTG 60.392 55.000 5.01 0.00 0.00 5.18
2502 2527 2.050077 GCCAAGTTCAAGTGCGGC 60.050 61.111 0.00 0.00 0.00 6.53
2812 2837 3.282745 GACTTCGAGGCTGCCGTGA 62.283 63.158 13.96 12.36 0.00 4.35
2826 2851 2.187946 GTGAGGGATGTCAGGGCG 59.812 66.667 0.00 0.00 0.00 6.13
2908 2933 3.378399 GAGCTCCTCCGAGGGCAAC 62.378 68.421 22.51 15.03 35.59 4.17
2938 2963 0.679640 GGACATGGCGGATTGTTGGA 60.680 55.000 0.00 0.00 0.00 3.53
3097 3122 6.035327 GCATCCAACTTGTGAATTGCTAATTC 59.965 38.462 12.10 12.10 45.86 2.17
3167 3195 8.208718 TCAAGTCCTTTCATTCCATAATTACG 57.791 34.615 0.00 0.00 0.00 3.18
3200 3228 9.979578 AAGTTTATGCTGTCTAGATCTTCATAG 57.020 33.333 0.00 0.00 0.00 2.23
3203 3231 3.254411 TGCTGTCTAGATCTTCATAGCCG 59.746 47.826 15.46 0.00 0.00 5.52
3205 3233 4.379394 GCTGTCTAGATCTTCATAGCCGAG 60.379 50.000 0.00 0.00 0.00 4.63
3242 3270 7.168219 ACACATAAGAGCAGGAATTTTAGTCA 58.832 34.615 0.00 0.00 0.00 3.41
3262 3290 7.497925 AGTCAGACTTAGAAACAAATTCACC 57.502 36.000 0.00 0.00 40.72 4.02
3322 3406 5.599999 TCTGCCTATCTTGGAGTAGTTTC 57.400 43.478 0.00 0.00 0.00 2.78
3368 3453 2.040145 TCCTGTCTTCCACATGCATTGA 59.960 45.455 0.00 0.00 33.23 2.57
3425 3510 2.607187 CGATTAGCACGGAACAGTTCT 58.393 47.619 13.13 0.00 0.00 3.01
3584 3669 4.749785 GCTCTAGGAGACTCTAGCCTTGAT 60.750 50.000 1.74 0.00 40.61 2.57
3591 3676 3.129638 AGACTCTAGCCTTGATGTCGAAC 59.870 47.826 0.00 0.00 0.00 3.95
3635 3720 3.525537 TCTAGAGCATGCTAACAGTTGC 58.474 45.455 22.74 5.32 35.34 4.17
3670 3755 1.633945 ACGGAAGGGGCAAGTAAGAAT 59.366 47.619 0.00 0.00 0.00 2.40
3679 3764 3.499918 GGGCAAGTAAGAATCATCCATCG 59.500 47.826 0.00 0.00 0.00 3.84
3736 3821 3.849911 TGTGCTAATAGCTCACTGACAC 58.150 45.455 13.88 1.27 42.97 3.67
3749 3834 1.135094 CTGACACCCTCCAGGCATAT 58.865 55.000 0.00 0.00 40.58 1.78
3779 3864 2.616510 GGGGAGCATATATGTGGACTGC 60.617 54.545 14.14 7.62 0.00 4.40
3878 3963 3.408634 TCGGGTCCATTTCTTGAAGAAC 58.591 45.455 7.21 0.00 33.26 3.01
4077 4162 3.450817 TGAGTCCACTGAACTGAACTGAA 59.549 43.478 0.00 0.00 0.00 3.02
4078 4163 4.081142 TGAGTCCACTGAACTGAACTGAAA 60.081 41.667 0.00 0.00 0.00 2.69
4079 4164 5.041191 AGTCCACTGAACTGAACTGAAAT 57.959 39.130 0.00 0.00 0.00 2.17
4080 4165 4.818546 AGTCCACTGAACTGAACTGAAATG 59.181 41.667 0.00 0.00 0.00 2.32
4081 4166 4.816385 GTCCACTGAACTGAACTGAAATGA 59.184 41.667 0.00 0.00 0.00 2.57
4124 4209 3.119743 TGAATCTTCTTGATGGCTTTGCG 60.120 43.478 0.00 0.00 35.21 4.85
4186 4271 8.200792 ACTTTCAACACCAAATGCTAAACAATA 58.799 29.630 0.00 0.00 0.00 1.90
4196 4281 8.719648 CCAAATGCTAAACAATATTTTGAAGCA 58.280 29.630 18.84 18.84 43.54 3.91
4210 4295 7.591006 ATTTTGAAGCATTGCATTCTGTTAG 57.409 32.000 11.91 0.00 0.00 2.34
4222 4307 6.966021 TGCATTCTGTTAGGTTTAGAACAAC 58.034 36.000 0.00 0.00 35.24 3.32
4258 4351 9.998106 TCATAGCTATCTTAAGGTTCCATTAAC 57.002 33.333 2.34 0.00 37.36 2.01
4285 4378 4.985409 GTCTGGAGACGATAATGGATTGTC 59.015 45.833 0.00 0.00 46.05 3.18
4295 4388 9.834628 GACGATAATGGATTGTCAAAAAGTAAA 57.165 29.630 0.00 0.00 45.30 2.01
4326 4422 7.222999 AGCTACTTTTTCCGATAGAGAAATTCG 59.777 37.037 0.00 0.00 35.96 3.34
4382 4481 3.641437 AACATGTTTGTTGTGATCCCG 57.359 42.857 4.92 0.00 44.36 5.14
4411 4510 1.712056 TGGACGAGAACAAGGAGGAA 58.288 50.000 0.00 0.00 0.00 3.36
4609 4711 2.796651 GCCAAGGCTGAGCAATCG 59.203 61.111 6.82 0.00 38.26 3.34
4672 4790 4.563976 GCTGAATGATGAAACGATTTTGGG 59.436 41.667 0.00 0.00 0.00 4.12
4717 4835 2.202797 GAATGCAGAGCGAGGCGA 60.203 61.111 0.00 0.00 0.00 5.54
4769 4907 3.815962 TGTAAACAAAGCATACGAAGGCA 59.184 39.130 0.00 0.00 33.96 4.75
4775 4913 1.453155 AGCATACGAAGGCAAAGGTG 58.547 50.000 0.00 0.00 33.96 4.00
4779 4917 0.250553 TACGAAGGCAAAGGTGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
4880 5030 6.691754 ATGGCATCATTTTTCGTATGTACA 57.308 33.333 0.00 0.00 0.00 2.90
4909 5059 0.038744 ACATCAGCAAGACAAGGGGG 59.961 55.000 0.00 0.00 0.00 5.40
4978 5128 2.899838 GGGCTGCGACACAACACA 60.900 61.111 0.00 0.00 0.00 3.72
4979 5129 2.477176 GGGCTGCGACACAACACAA 61.477 57.895 0.00 0.00 0.00 3.33
4980 5130 1.298339 GGCTGCGACACAACACAAC 60.298 57.895 0.00 0.00 0.00 3.32
4981 5131 1.427419 GCTGCGACACAACACAACA 59.573 52.632 0.00 0.00 0.00 3.33
4982 5132 0.589729 GCTGCGACACAACACAACAG 60.590 55.000 0.00 0.00 0.00 3.16
4983 5133 1.006086 CTGCGACACAACACAACAGA 58.994 50.000 0.00 0.00 0.00 3.41
4984 5134 1.396648 CTGCGACACAACACAACAGAA 59.603 47.619 0.00 0.00 0.00 3.02
4985 5135 1.129624 TGCGACACAACACAACAGAAC 59.870 47.619 0.00 0.00 0.00 3.01
4986 5136 1.129624 GCGACACAACACAACAGAACA 59.870 47.619 0.00 0.00 0.00 3.18
5181 5339 2.187707 CAGCCAATACGATTTGCTTGC 58.812 47.619 0.00 0.00 0.00 4.01
5202 5360 3.723348 GTTGTCGCCGGCCACTTC 61.723 66.667 24.85 13.61 0.00 3.01
5209 5367 4.367023 CCGGCCACTTCGTTCGGA 62.367 66.667 2.24 0.00 42.94 4.55
5210 5368 2.809601 CGGCCACTTCGTTCGGAG 60.810 66.667 2.24 0.00 0.00 4.63
5211 5369 2.434359 GGCCACTTCGTTCGGAGG 60.434 66.667 0.00 0.00 0.00 4.30
5212 5370 2.434359 GCCACTTCGTTCGGAGGG 60.434 66.667 5.49 0.39 0.00 4.30
5213 5371 3.057337 CCACTTCGTTCGGAGGGT 58.943 61.111 5.49 0.00 0.00 4.34
5214 5372 1.080025 CCACTTCGTTCGGAGGGTC 60.080 63.158 5.49 0.00 0.00 4.46
5215 5373 1.533469 CCACTTCGTTCGGAGGGTCT 61.533 60.000 5.49 0.00 0.00 3.85
5216 5374 1.171308 CACTTCGTTCGGAGGGTCTA 58.829 55.000 5.49 0.00 0.00 2.59
5217 5375 1.132643 CACTTCGTTCGGAGGGTCTAG 59.867 57.143 5.49 0.00 0.00 2.43
5218 5376 1.271817 ACTTCGTTCGGAGGGTCTAGT 60.272 52.381 5.49 0.00 0.00 2.57
5219 5377 2.026822 ACTTCGTTCGGAGGGTCTAGTA 60.027 50.000 5.49 0.00 0.00 1.82
5220 5378 3.212685 CTTCGTTCGGAGGGTCTAGTAT 58.787 50.000 0.00 0.00 0.00 2.12
5221 5379 3.287867 TCGTTCGGAGGGTCTAGTATT 57.712 47.619 0.00 0.00 0.00 1.89
5222 5380 4.422073 TCGTTCGGAGGGTCTAGTATTA 57.578 45.455 0.00 0.00 0.00 0.98
5223 5381 4.978099 TCGTTCGGAGGGTCTAGTATTAT 58.022 43.478 0.00 0.00 0.00 1.28
5224 5382 5.380043 TCGTTCGGAGGGTCTAGTATTATT 58.620 41.667 0.00 0.00 0.00 1.40
5225 5383 5.240183 TCGTTCGGAGGGTCTAGTATTATTG 59.760 44.000 0.00 0.00 0.00 1.90
5226 5384 5.228665 GTTCGGAGGGTCTAGTATTATTGC 58.771 45.833 0.00 0.00 0.00 3.56
5227 5385 4.737578 TCGGAGGGTCTAGTATTATTGCT 58.262 43.478 0.00 0.00 0.00 3.91
5228 5386 5.145564 TCGGAGGGTCTAGTATTATTGCTT 58.854 41.667 0.00 0.00 0.00 3.91
5283 5446 4.082026 CCAATCTGTTCCATTCCCAAAGAC 60.082 45.833 0.00 0.00 0.00 3.01
5310 5473 6.865205 CAGTTTTCTGGCTTTTCTTATTCTGG 59.135 38.462 0.00 0.00 43.61 3.86
5311 5474 5.391312 TTTCTGGCTTTTCTTATTCTGGC 57.609 39.130 0.00 0.00 0.00 4.85
5312 5475 4.307032 TCTGGCTTTTCTTATTCTGGCT 57.693 40.909 0.00 0.00 0.00 4.75
5313 5476 4.666512 TCTGGCTTTTCTTATTCTGGCTT 58.333 39.130 0.00 0.00 0.00 4.35
5314 5477 5.815581 TCTGGCTTTTCTTATTCTGGCTTA 58.184 37.500 0.00 0.00 0.00 3.09
5315 5478 6.426587 TCTGGCTTTTCTTATTCTGGCTTAT 58.573 36.000 0.00 0.00 0.00 1.73
5316 5479 6.891908 TCTGGCTTTTCTTATTCTGGCTTATT 59.108 34.615 0.00 0.00 0.00 1.40
5317 5480 7.397192 TCTGGCTTTTCTTATTCTGGCTTATTT 59.603 33.333 0.00 0.00 0.00 1.40
5318 5481 8.588290 TGGCTTTTCTTATTCTGGCTTATTTA 57.412 30.769 0.00 0.00 0.00 1.40
5319 5482 8.686334 TGGCTTTTCTTATTCTGGCTTATTTAG 58.314 33.333 0.00 0.00 0.00 1.85
5320 5483 8.687242 GGCTTTTCTTATTCTGGCTTATTTAGT 58.313 33.333 0.00 0.00 0.00 2.24
5321 5484 9.723447 GCTTTTCTTATTCTGGCTTATTTAGTC 57.277 33.333 0.00 0.00 0.00 2.59
5322 5485 9.922305 CTTTTCTTATTCTGGCTTATTTAGTCG 57.078 33.333 0.00 0.00 0.00 4.18
5323 5486 8.433421 TTTCTTATTCTGGCTTATTTAGTCGG 57.567 34.615 0.00 0.00 36.11 4.79
5324 5487 5.989777 TCTTATTCTGGCTTATTTAGTCGGC 59.010 40.000 0.00 0.00 34.69 5.54
5325 5488 3.620427 TTCTGGCTTATTTAGTCGGCA 57.380 42.857 0.00 0.00 34.69 5.69
5326 5489 3.838244 TCTGGCTTATTTAGTCGGCAT 57.162 42.857 0.00 0.00 34.69 4.40
5327 5490 4.150897 TCTGGCTTATTTAGTCGGCATT 57.849 40.909 0.00 0.00 34.69 3.56
5328 5491 4.127171 TCTGGCTTATTTAGTCGGCATTC 58.873 43.478 0.00 0.00 34.69 2.67
5329 5492 3.211045 TGGCTTATTTAGTCGGCATTCC 58.789 45.455 0.00 0.00 0.00 3.01
5330 5493 3.118038 TGGCTTATTTAGTCGGCATTCCT 60.118 43.478 0.00 0.00 0.00 3.36
5331 5494 4.101898 TGGCTTATTTAGTCGGCATTCCTA 59.898 41.667 0.00 0.00 0.00 2.94
5332 5495 5.221843 TGGCTTATTTAGTCGGCATTCCTAT 60.222 40.000 0.00 0.00 0.00 2.57
5333 5496 5.705905 GGCTTATTTAGTCGGCATTCCTATT 59.294 40.000 0.00 0.00 0.00 1.73
5334 5497 6.206829 GGCTTATTTAGTCGGCATTCCTATTT 59.793 38.462 0.00 0.00 0.00 1.40
5335 5498 7.389607 GGCTTATTTAGTCGGCATTCCTATTTA 59.610 37.037 0.00 0.00 0.00 1.40
5336 5499 8.443937 GCTTATTTAGTCGGCATTCCTATTTAG 58.556 37.037 0.00 0.00 0.00 1.85
5337 5500 6.803154 ATTTAGTCGGCATTCCTATTTAGC 57.197 37.500 0.00 0.00 0.00 3.09
5338 5501 2.755650 AGTCGGCATTCCTATTTAGCG 58.244 47.619 0.00 0.00 0.00 4.26
5339 5502 1.194772 GTCGGCATTCCTATTTAGCGC 59.805 52.381 0.00 0.00 0.00 5.92
5340 5503 1.070134 TCGGCATTCCTATTTAGCGCT 59.930 47.619 17.26 17.26 0.00 5.92
5341 5504 1.195448 CGGCATTCCTATTTAGCGCTG 59.805 52.381 22.90 1.61 0.00 5.18
5342 5505 1.068954 GGCATTCCTATTTAGCGCTGC 60.069 52.381 22.90 11.51 0.00 5.25
5343 5506 1.603802 GCATTCCTATTTAGCGCTGCA 59.396 47.619 22.90 6.48 0.00 4.41
5344 5507 2.227388 GCATTCCTATTTAGCGCTGCAT 59.773 45.455 22.90 14.22 0.00 3.96
5345 5508 3.304928 GCATTCCTATTTAGCGCTGCATT 60.305 43.478 22.90 5.63 0.00 3.56
5346 5509 4.083324 GCATTCCTATTTAGCGCTGCATTA 60.083 41.667 22.90 6.53 0.00 1.90
5347 5510 5.385617 CATTCCTATTTAGCGCTGCATTAC 58.614 41.667 22.90 0.00 0.00 1.89
5348 5511 4.066646 TCCTATTTAGCGCTGCATTACA 57.933 40.909 22.90 0.00 0.00 2.41
5369 5532 1.135108 GCAATTTGCAAATGGGCGC 59.865 52.632 24.74 19.46 44.26 6.53
5370 5533 1.795507 CAATTTGCAAATGGGCGCC 59.204 52.632 24.74 21.18 36.28 6.53
5371 5534 1.377072 AATTTGCAAATGGGCGCCC 60.377 52.632 39.40 39.40 36.28 6.13
5372 5535 3.662378 ATTTGCAAATGGGCGCCCG 62.662 57.895 39.00 26.10 39.42 6.13
5375 5538 3.444805 GCAAATGGGCGCCCGTTA 61.445 61.111 44.92 28.64 43.89 3.18
5376 5539 2.487892 CAAATGGGCGCCCGTTAC 59.512 61.111 44.92 22.13 43.89 2.50
5377 5540 2.034376 AAATGGGCGCCCGTTACA 59.966 55.556 44.92 27.86 43.89 2.41
5378 5541 2.043980 AAATGGGCGCCCGTTACAG 61.044 57.895 44.92 0.00 43.89 2.74
5379 5542 2.757980 AAATGGGCGCCCGTTACAGT 62.758 55.000 44.92 30.59 43.89 3.55
5380 5543 3.969250 ATGGGCGCCCGTTACAGTG 62.969 63.158 39.00 0.00 39.42 3.66
5383 5546 3.350612 GCGCCCGTTACAGTGCAA 61.351 61.111 0.00 0.00 39.31 4.08
5384 5547 2.554272 CGCCCGTTACAGTGCAAC 59.446 61.111 0.00 0.00 0.00 4.17
5397 5560 3.553039 GCAACTTGCAAATGGGCG 58.447 55.556 8.97 0.00 44.26 6.13
5398 5561 2.670210 GCAACTTGCAAATGGGCGC 61.670 57.895 8.97 0.00 44.26 6.53
5399 5562 2.028733 CAACTTGCAAATGGGCGCC 61.029 57.895 21.18 21.18 36.28 6.53
5400 5563 2.209315 AACTTGCAAATGGGCGCCT 61.209 52.632 28.56 3.74 36.28 5.52
5401 5564 2.125832 CTTGCAAATGGGCGCCTG 60.126 61.111 28.56 18.09 36.28 4.85
5402 5565 4.376176 TTGCAAATGGGCGCCTGC 62.376 61.111 28.56 27.41 41.71 4.85
5404 5567 4.807039 GCAAATGGGCGCCTGCAG 62.807 66.667 27.85 15.69 45.35 4.41
5405 5568 4.807039 CAAATGGGCGCCTGCAGC 62.807 66.667 28.56 9.87 45.35 5.25
5411 5574 4.410743 GGCGCCTGCAGCAGTTTC 62.411 66.667 22.15 8.81 45.35 2.78
5412 5575 3.360340 GCGCCTGCAGCAGTTTCT 61.360 61.111 21.26 0.00 44.04 2.52
5413 5576 2.034879 GCGCCTGCAGCAGTTTCTA 61.035 57.895 21.26 0.00 44.04 2.10
5414 5577 1.372087 GCGCCTGCAGCAGTTTCTAT 61.372 55.000 21.26 0.00 44.04 1.98
5415 5578 1.939974 CGCCTGCAGCAGTTTCTATA 58.060 50.000 21.26 0.00 44.04 1.31
5416 5579 2.487934 CGCCTGCAGCAGTTTCTATAT 58.512 47.619 21.26 0.00 44.04 0.86
5417 5580 2.874701 CGCCTGCAGCAGTTTCTATATT 59.125 45.455 21.26 0.00 44.04 1.28
5418 5581 3.313526 CGCCTGCAGCAGTTTCTATATTT 59.686 43.478 21.26 0.00 44.04 1.40
5419 5582 4.201950 CGCCTGCAGCAGTTTCTATATTTT 60.202 41.667 21.26 0.00 44.04 1.82
5420 5583 5.654497 GCCTGCAGCAGTTTCTATATTTTT 58.346 37.500 21.26 0.00 42.97 1.94
5421 5584 5.745769 GCCTGCAGCAGTTTCTATATTTTTC 59.254 40.000 21.26 0.00 42.97 2.29
5422 5585 6.268566 CCTGCAGCAGTTTCTATATTTTTCC 58.731 40.000 21.26 0.00 0.00 3.13
5423 5586 6.096001 CCTGCAGCAGTTTCTATATTTTTCCT 59.904 38.462 21.26 0.00 0.00 3.36
5424 5587 7.363268 CCTGCAGCAGTTTCTATATTTTTCCTT 60.363 37.037 21.26 0.00 0.00 3.36
5425 5588 7.538575 TGCAGCAGTTTCTATATTTTTCCTTC 58.461 34.615 0.00 0.00 0.00 3.46
5426 5589 6.975197 GCAGCAGTTTCTATATTTTTCCTTCC 59.025 38.462 0.00 0.00 0.00 3.46
5427 5590 7.148000 GCAGCAGTTTCTATATTTTTCCTTCCT 60.148 37.037 0.00 0.00 0.00 3.36
5428 5591 8.186821 CAGCAGTTTCTATATTTTTCCTTCCTG 58.813 37.037 0.00 0.00 0.00 3.86
5429 5592 7.890655 AGCAGTTTCTATATTTTTCCTTCCTGT 59.109 33.333 0.00 0.00 0.00 4.00
5430 5593 8.523658 GCAGTTTCTATATTTTTCCTTCCTGTT 58.476 33.333 0.00 0.00 0.00 3.16
5439 5602 7.764695 ATTTTTCCTTCCTGTTTTGTAAACG 57.235 32.000 0.00 0.00 0.00 3.60
5440 5603 5.900865 TTTCCTTCCTGTTTTGTAAACGT 57.099 34.783 0.00 0.00 0.00 3.99
5441 5604 5.488645 TTCCTTCCTGTTTTGTAAACGTC 57.511 39.130 0.00 0.00 0.00 4.34
5442 5605 4.515361 TCCTTCCTGTTTTGTAAACGTCA 58.485 39.130 0.00 0.00 0.00 4.35
5443 5606 4.942483 TCCTTCCTGTTTTGTAAACGTCAA 59.058 37.500 0.00 0.00 0.00 3.18
5444 5607 5.415077 TCCTTCCTGTTTTGTAAACGTCAAA 59.585 36.000 0.00 0.00 33.76 2.69
5445 5608 6.072064 TCCTTCCTGTTTTGTAAACGTCAAAA 60.072 34.615 8.97 8.97 40.77 2.44
5446 5609 6.586844 CCTTCCTGTTTTGTAAACGTCAAAAA 59.413 34.615 13.32 4.85 43.27 1.94
5462 5625 1.043022 AAAAAGAGTGCTGCCAAGGG 58.957 50.000 0.00 0.00 0.00 3.95
5463 5626 0.185901 AAAAGAGTGCTGCCAAGGGA 59.814 50.000 0.00 0.00 0.00 4.20
5464 5627 0.251077 AAAGAGTGCTGCCAAGGGAG 60.251 55.000 2.91 2.91 36.62 4.30
5465 5628 1.422161 AAGAGTGCTGCCAAGGGAGT 61.422 55.000 9.44 0.00 35.92 3.85
5466 5629 1.073897 GAGTGCTGCCAAGGGAGTT 59.926 57.895 9.44 0.00 35.92 3.01
5467 5630 0.957888 GAGTGCTGCCAAGGGAGTTC 60.958 60.000 9.44 3.29 35.92 3.01
5468 5631 2.032528 TGCTGCCAAGGGAGTTCG 59.967 61.111 9.44 0.00 35.92 3.95
5469 5632 2.347490 GCTGCCAAGGGAGTTCGA 59.653 61.111 9.44 0.00 35.92 3.71
5470 5633 1.302511 GCTGCCAAGGGAGTTCGAA 60.303 57.895 9.44 0.00 35.92 3.71
5471 5634 1.578206 GCTGCCAAGGGAGTTCGAAC 61.578 60.000 20.71 20.71 35.92 3.95
5472 5635 0.035458 CTGCCAAGGGAGTTCGAACT 59.965 55.000 30.12 30.12 43.16 3.01
5480 5643 3.196613 GAGTTCGAACTCGCAACCT 57.803 52.632 35.23 11.96 45.11 3.50
5481 5644 2.342910 GAGTTCGAACTCGCAACCTA 57.657 50.000 35.23 0.00 45.11 3.08
5482 5645 2.877335 GAGTTCGAACTCGCAACCTAT 58.123 47.619 35.23 10.51 45.11 2.57
5483 5646 3.251571 GAGTTCGAACTCGCAACCTATT 58.748 45.455 35.23 10.00 45.11 1.73
5484 5647 3.251571 AGTTCGAACTCGCAACCTATTC 58.748 45.455 24.93 0.00 39.60 1.75
5485 5648 1.904144 TCGAACTCGCAACCTATTCG 58.096 50.000 0.00 0.00 42.63 3.34
5486 5649 1.200716 TCGAACTCGCAACCTATTCGT 59.799 47.619 4.79 0.00 42.07 3.85
5487 5650 1.990563 CGAACTCGCAACCTATTCGTT 59.009 47.619 0.00 0.00 37.85 3.85
5488 5651 2.222508 CGAACTCGCAACCTATTCGTTG 60.223 50.000 0.00 0.00 44.87 4.10
5489 5652 1.722011 ACTCGCAACCTATTCGTTGG 58.278 50.000 3.85 0.00 42.78 3.77
5493 5656 0.733150 GCAACCTATTCGTTGGGAGC 59.267 55.000 3.85 0.00 42.78 4.70
5494 5657 1.006832 CAACCTATTCGTTGGGAGCG 58.993 55.000 0.00 0.00 39.58 5.03
5495 5658 0.743345 AACCTATTCGTTGGGAGCGC 60.743 55.000 0.00 0.00 0.00 5.92
5496 5659 1.144057 CCTATTCGTTGGGAGCGCT 59.856 57.895 11.27 11.27 0.00 5.92
5497 5660 0.876342 CCTATTCGTTGGGAGCGCTC 60.876 60.000 29.38 29.38 0.00 5.03
5498 5661 1.209275 CTATTCGTTGGGAGCGCTCG 61.209 60.000 29.81 19.43 0.00 5.03
5499 5662 2.622903 TATTCGTTGGGAGCGCTCGG 62.623 60.000 29.81 16.27 0.00 4.63
5509 5672 3.081993 GCGCTCGGCTGTAGAAAC 58.918 61.111 0.00 0.00 39.11 2.78
5510 5673 2.453638 GCGCTCGGCTGTAGAAACC 61.454 63.158 0.00 0.00 39.11 3.27
5511 5674 1.080093 CGCTCGGCTGTAGAAACCA 60.080 57.895 0.00 0.00 0.00 3.67
5512 5675 1.352156 CGCTCGGCTGTAGAAACCAC 61.352 60.000 0.00 0.00 0.00 4.16
5513 5676 1.352156 GCTCGGCTGTAGAAACCACG 61.352 60.000 0.00 0.00 0.00 4.94
5514 5677 1.352156 CTCGGCTGTAGAAACCACGC 61.352 60.000 0.00 0.00 0.00 5.34
5515 5678 1.666553 CGGCTGTAGAAACCACGCA 60.667 57.895 0.00 0.00 0.00 5.24
5516 5679 1.225376 CGGCTGTAGAAACCACGCAA 61.225 55.000 0.00 0.00 0.00 4.85
5517 5680 1.165270 GGCTGTAGAAACCACGCAAT 58.835 50.000 0.00 0.00 0.00 3.56
5518 5681 1.130561 GGCTGTAGAAACCACGCAATC 59.869 52.381 0.00 0.00 0.00 2.67
5519 5682 1.130561 GCTGTAGAAACCACGCAATCC 59.869 52.381 0.00 0.00 0.00 3.01
5520 5683 2.422597 CTGTAGAAACCACGCAATCCA 58.577 47.619 0.00 0.00 0.00 3.41
5521 5684 2.147958 TGTAGAAACCACGCAATCCAC 58.852 47.619 0.00 0.00 0.00 4.02
5522 5685 2.224426 TGTAGAAACCACGCAATCCACT 60.224 45.455 0.00 0.00 0.00 4.00
5523 5686 1.523758 AGAAACCACGCAATCCACTC 58.476 50.000 0.00 0.00 0.00 3.51
5524 5687 0.165944 GAAACCACGCAATCCACTCG 59.834 55.000 0.00 0.00 0.00 4.18
5525 5688 1.852067 AAACCACGCAATCCACTCGC 61.852 55.000 0.00 0.00 0.00 5.03
5526 5689 2.434884 CCACGCAATCCACTCGCT 60.435 61.111 0.00 0.00 0.00 4.93
5527 5690 2.743752 CCACGCAATCCACTCGCTG 61.744 63.158 0.00 0.00 0.00 5.18
5528 5691 2.434884 ACGCAATCCACTCGCTGG 60.435 61.111 0.00 0.00 42.29 4.85
5529 5692 2.434884 CGCAATCCACTCGCTGGT 60.435 61.111 0.00 0.00 41.52 4.00
5530 5693 2.743752 CGCAATCCACTCGCTGGTG 61.744 63.158 0.00 0.00 41.52 4.17
5531 5694 1.375908 GCAATCCACTCGCTGGTGA 60.376 57.895 7.36 0.00 41.52 4.02
5532 5695 0.955428 GCAATCCACTCGCTGGTGAA 60.955 55.000 7.36 0.00 41.52 3.18
5533 5696 1.522668 CAATCCACTCGCTGGTGAAA 58.477 50.000 7.36 0.00 41.52 2.69
5534 5697 1.466167 CAATCCACTCGCTGGTGAAAG 59.534 52.381 7.36 0.00 41.52 2.62
5535 5698 0.036010 ATCCACTCGCTGGTGAAAGG 60.036 55.000 7.36 0.00 41.52 3.11
5536 5699 1.118965 TCCACTCGCTGGTGAAAGGA 61.119 55.000 7.36 0.00 41.52 3.36
5537 5700 0.036010 CCACTCGCTGGTGAAAGGAT 60.036 55.000 7.36 0.00 39.34 3.24
5538 5701 1.611673 CCACTCGCTGGTGAAAGGATT 60.612 52.381 7.36 0.00 39.34 3.01
5539 5702 1.466167 CACTCGCTGGTGAAAGGATTG 59.534 52.381 0.46 0.00 39.34 2.67
5540 5703 1.072331 ACTCGCTGGTGAAAGGATTGT 59.928 47.619 0.00 0.00 0.00 2.71
5541 5704 2.154462 CTCGCTGGTGAAAGGATTGTT 58.846 47.619 0.00 0.00 0.00 2.83
5542 5705 2.151202 TCGCTGGTGAAAGGATTGTTC 58.849 47.619 0.00 0.00 0.00 3.18
5543 5706 1.879380 CGCTGGTGAAAGGATTGTTCA 59.121 47.619 0.00 0.00 32.62 3.18
5544 5707 2.489329 CGCTGGTGAAAGGATTGTTCAT 59.511 45.455 0.00 0.00 37.34 2.57
5545 5708 3.057315 CGCTGGTGAAAGGATTGTTCATT 60.057 43.478 0.00 0.00 37.34 2.57
5546 5709 4.559300 CGCTGGTGAAAGGATTGTTCATTT 60.559 41.667 0.00 0.00 38.49 2.32
5547 5710 5.299949 GCTGGTGAAAGGATTGTTCATTTT 58.700 37.500 0.00 0.00 36.08 1.82
5548 5711 6.454795 GCTGGTGAAAGGATTGTTCATTTTA 58.545 36.000 0.00 0.00 36.08 1.52
5549 5712 6.366061 GCTGGTGAAAGGATTGTTCATTTTAC 59.634 38.462 1.04 1.04 39.80 2.01
5550 5713 7.595819 TGGTGAAAGGATTGTTCATTTTACT 57.404 32.000 7.58 0.00 40.16 2.24
5551 5714 8.017418 TGGTGAAAGGATTGTTCATTTTACTT 57.983 30.769 7.58 0.00 40.16 2.24
5552 5715 8.141268 TGGTGAAAGGATTGTTCATTTTACTTC 58.859 33.333 7.58 0.00 40.16 3.01
5553 5716 8.360390 GGTGAAAGGATTGTTCATTTTACTTCT 58.640 33.333 7.58 0.00 40.16 2.85
5554 5717 9.750125 GTGAAAGGATTGTTCATTTTACTTCTT 57.250 29.630 2.17 0.00 38.41 2.52
5585 5748 9.683069 TTCGTTCTATATACTTCGGTTTATTCC 57.317 33.333 0.00 0.00 0.00 3.01
5586 5749 9.071276 TCGTTCTATATACTTCGGTTTATTCCT 57.929 33.333 0.00 0.00 0.00 3.36
5587 5750 9.688592 CGTTCTATATACTTCGGTTTATTCCTT 57.311 33.333 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 2.576191 TGGGGGAGACAAAACCTCATAG 59.424 50.000 0.00 0.00 27.52 2.23
113 114 1.630369 CTGACAGATTGGGGGAGACAA 59.370 52.381 0.00 0.00 0.00 3.18
132 135 4.405358 GGAAGACAACTCCAGATCTGATCT 59.595 45.833 24.62 14.31 41.15 2.75
161 164 2.072298 CTGAAGAAGAAGGCGGTGAAG 58.928 52.381 0.00 0.00 0.00 3.02
180 184 5.071923 GCTCTAGAAACATATAACCACCCCT 59.928 44.000 0.00 0.00 0.00 4.79
226 230 2.456287 AAACTCGCTGGTCAGAGCCC 62.456 60.000 1.65 0.00 37.99 5.19
237 241 3.319137 TGTAGCATCTTGAAACTCGCT 57.681 42.857 0.00 0.00 0.00 4.93
248 252 6.428159 GGGAAAATATTGTCGATGTAGCATCT 59.572 38.462 7.41 0.00 0.00 2.90
250 254 6.061441 TGGGAAAATATTGTCGATGTAGCAT 58.939 36.000 0.00 0.00 0.00 3.79
282 287 2.356553 TGAACCTCCGAAACGCCG 60.357 61.111 0.00 0.00 0.00 6.46
285 290 0.317479 ACCTCTGAACCTCCGAAACG 59.683 55.000 0.00 0.00 0.00 3.60
298 303 3.699894 AGCTCGGTGCCACCTCTG 61.700 66.667 12.94 2.88 44.23 3.35
319 324 2.049526 CCTACAGCGTGTCGTGCA 60.050 61.111 0.00 0.00 33.85 4.57
320 325 2.049433 ACCTACAGCGTGTCGTGC 60.049 61.111 0.00 0.00 0.00 5.34
330 335 1.895798 TCTTCCTGCAGTCACCTACAG 59.104 52.381 13.81 0.00 32.66 2.74
334 339 1.131638 TGTTCTTCCTGCAGTCACCT 58.868 50.000 13.81 0.00 0.00 4.00
340 345 3.996150 ATGTTTGTGTTCTTCCTGCAG 57.004 42.857 6.78 6.78 0.00 4.41
351 356 8.090214 CCTTCCTTGATGAATTAATGTTTGTGT 58.910 33.333 0.00 0.00 0.00 3.72
355 360 7.235399 ACACCCTTCCTTGATGAATTAATGTTT 59.765 33.333 0.00 0.00 0.00 2.83
359 369 6.256053 ACACACCCTTCCTTGATGAATTAAT 58.744 36.000 0.00 0.00 0.00 1.40
472 486 6.749923 TTTTTGGTTCCATTGTTTCCTTTG 57.250 33.333 0.00 0.00 0.00 2.77
600 615 7.095940 CCATGCTTTGTTTGAAATGTTCTACTG 60.096 37.037 0.00 0.00 0.00 2.74
602 617 6.146021 CCCATGCTTTGTTTGAAATGTTCTAC 59.854 38.462 0.00 0.00 0.00 2.59
603 618 6.183360 ACCCATGCTTTGTTTGAAATGTTCTA 60.183 34.615 0.00 0.00 0.00 2.10
604 619 5.058490 CCCATGCTTTGTTTGAAATGTTCT 58.942 37.500 0.00 0.00 0.00 3.01
616 631 0.400213 TTCTCCGACCCATGCTTTGT 59.600 50.000 0.00 0.00 0.00 2.83
646 661 5.006261 CGAACAAAACAAAATTGGACCTTCC 59.994 40.000 0.00 0.00 36.96 3.46
1159 1178 2.343163 GACGCGGACATCAGAGAGGG 62.343 65.000 12.47 0.00 0.00 4.30
1160 1179 1.064946 GACGCGGACATCAGAGAGG 59.935 63.158 12.47 0.00 0.00 3.69
1164 1183 3.396911 GAGCGACGCGGACATCAGA 62.397 63.158 15.18 0.00 0.00 3.27
1350 1369 1.446272 GAGGTCGTCGCCTTTCCTG 60.446 63.158 9.18 0.00 39.34 3.86
1722 1741 2.728007 TCTTCTTCCTCGCTCTCATCA 58.272 47.619 0.00 0.00 0.00 3.07
2415 2440 3.575351 GAACCACTCCTGCGCGTCT 62.575 63.158 8.43 0.00 0.00 4.18
2502 2527 2.779755 TGTAGGCCATGTACTTGTGG 57.220 50.000 5.01 7.83 38.55 4.17
2812 2837 0.692419 AAGATCGCCCTGACATCCCT 60.692 55.000 0.00 0.00 0.00 4.20
2826 2851 0.385751 TCGGATCCAGCGTCAAGATC 59.614 55.000 13.41 0.00 36.49 2.75
2908 2933 3.506096 CATGTCCCGCTGCTGCAG 61.506 66.667 24.80 24.80 39.64 4.41
2967 2992 1.706287 CGAGAGAGCCGATGTCGTCA 61.706 60.000 1.44 0.00 37.74 4.35
2985 3010 1.792301 CATCTGCTGGACAACTGCG 59.208 57.895 0.00 0.00 45.96 5.18
3097 3122 6.867662 AAGACAATGTAAACTTGTGGAGAG 57.132 37.500 0.00 0.00 36.98 3.20
3167 3195 8.879342 ATCTAGACAGCATAAACTTGATACAC 57.121 34.615 0.00 0.00 0.00 2.90
3200 3228 2.803956 TGTGTAAAGTAAAGCACTCGGC 59.196 45.455 0.00 0.00 45.30 5.54
3203 3231 7.117812 TGCTCTTATGTGTAAAGTAAAGCACTC 59.882 37.037 0.00 0.00 36.04 3.51
3205 3233 7.129109 TGCTCTTATGTGTAAAGTAAAGCAC 57.871 36.000 0.00 0.00 0.00 4.40
3213 3241 9.994432 CTAAAATTCCTGCTCTTATGTGTAAAG 57.006 33.333 0.00 0.00 0.00 1.85
3242 3270 7.700656 CGTTTTGGTGAATTTGTTTCTAAGTCT 59.299 33.333 0.00 0.00 35.23 3.24
3262 3290 8.475926 CAGTATTAGAAACTGTTGTCGTTTTG 57.524 34.615 0.00 0.00 39.61 2.44
3368 3453 3.760684 CAGCCTTCTGACAATTTAGCCTT 59.239 43.478 0.00 0.00 42.95 4.35
3419 3504 6.700960 GTCTCTCATGGTCATGAATAGAACTG 59.299 42.308 18.92 6.70 46.10 3.16
3425 3510 6.550938 ACAAGTCTCTCATGGTCATGAATA 57.449 37.500 13.73 5.59 46.10 1.75
3488 3573 1.301677 CGGCCTTCTCAAGTGCTTCC 61.302 60.000 0.00 0.00 0.00 3.46
3591 3676 0.662619 TGAACAACAGAAAGCGCAGG 59.337 50.000 11.47 0.00 0.00 4.85
3670 3755 1.068083 GAGAAGCGGCGATGGATGA 59.932 57.895 12.98 0.00 0.00 2.92
3679 3764 0.179189 CGTGGAAAATGAGAAGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
3736 3821 5.195940 CCATATTGTTATATGCCTGGAGGG 58.804 45.833 0.00 0.00 41.46 4.30
3749 3834 7.183657 TCCACATATATGCTCCCCATATTGTTA 59.816 37.037 12.79 0.00 43.03 2.41
3779 3864 1.097232 TTGCCTCATCCAGCAAATCG 58.903 50.000 0.00 0.00 45.51 3.34
3812 3897 3.825143 TGCTTGATGCTCAGTGCTATA 57.175 42.857 0.00 0.00 43.37 1.31
3878 3963 2.165167 TCAAATGCAGCCTTCTTCCTG 58.835 47.619 0.00 0.00 0.00 3.86
4077 4162 2.168496 GCCAGCCATCATATGCTCATT 58.832 47.619 0.00 0.00 35.12 2.57
4078 4163 1.074889 TGCCAGCCATCATATGCTCAT 59.925 47.619 0.00 0.00 35.12 2.90
4079 4164 0.475044 TGCCAGCCATCATATGCTCA 59.525 50.000 0.00 0.00 35.12 4.26
4080 4165 0.879765 GTGCCAGCCATCATATGCTC 59.120 55.000 0.00 0.00 35.12 4.26
4081 4166 0.477204 AGTGCCAGCCATCATATGCT 59.523 50.000 0.00 0.00 38.67 3.79
4124 4209 8.020819 TGTAAAGTTTGTGCACATTAGAATAGC 58.979 33.333 22.39 5.74 0.00 2.97
4186 4271 6.592607 CCTAACAGAATGCAATGCTTCAAAAT 59.407 34.615 6.82 0.00 42.53 1.82
4196 4281 7.759489 TGTTCTAAACCTAACAGAATGCAAT 57.241 32.000 0.00 0.00 42.53 3.56
4210 4295 1.219646 TCCGCGTGTTGTTCTAAACC 58.780 50.000 4.92 0.00 0.00 3.27
4222 4307 3.579709 AGATAGCTATGAATTCCGCGTG 58.420 45.455 11.94 0.00 0.00 5.34
4258 4351 3.116300 CCATTATCGTCTCCAGACAACG 58.884 50.000 7.48 0.00 44.99 4.10
4293 4386 9.482627 CTCTATCGGAAAAAGTAGCTATGATTT 57.517 33.333 0.00 0.00 0.00 2.17
4294 4387 8.861086 TCTCTATCGGAAAAAGTAGCTATGATT 58.139 33.333 0.00 0.00 0.00 2.57
4295 4388 8.410673 TCTCTATCGGAAAAAGTAGCTATGAT 57.589 34.615 0.00 0.00 0.00 2.45
4326 4422 5.956068 AAAATTCTTCAGACTTCAGCTCC 57.044 39.130 0.00 0.00 0.00 4.70
4332 4428 7.150640 AGCCATTGAAAAATTCTTCAGACTTC 58.849 34.615 0.00 0.00 36.69 3.01
4382 4481 1.996191 GTTCTCGTCCATCAGAACTGC 59.004 52.381 5.45 0.00 43.54 4.40
4411 4510 4.531426 AGCTCCCCGATCGCCTCT 62.531 66.667 10.32 0.00 0.00 3.69
4609 4711 2.415426 GTCGCAGGCTAGCTCTCC 59.585 66.667 15.72 0.00 0.00 3.71
4717 4835 1.589113 GTCCGTGCTCTCTTCTGCT 59.411 57.895 0.00 0.00 0.00 4.24
4769 4907 1.763770 CAGAGCTCCACCCACCTTT 59.236 57.895 10.93 0.00 0.00 3.11
4775 4913 2.167398 TTACACGCAGAGCTCCACCC 62.167 60.000 10.93 0.00 0.00 4.61
4779 4917 3.768632 CGTTACACGCAGAGCTCC 58.231 61.111 10.93 0.00 33.65 4.70
4878 5028 6.152831 TGTCTTGCTGATGTATACAGTACTGT 59.847 38.462 30.13 30.13 46.87 3.55
4879 5029 6.564328 TGTCTTGCTGATGTATACAGTACTG 58.436 40.000 21.44 21.44 37.64 2.74
4880 5030 6.775594 TGTCTTGCTGATGTATACAGTACT 57.224 37.500 11.91 0.00 37.64 2.73
4978 5128 2.945668 GCCTGTTCTGTTCTGTTCTGTT 59.054 45.455 0.00 0.00 0.00 3.16
4979 5129 2.171448 AGCCTGTTCTGTTCTGTTCTGT 59.829 45.455 0.00 0.00 0.00 3.41
4980 5130 2.547211 CAGCCTGTTCTGTTCTGTTCTG 59.453 50.000 0.00 0.00 0.00 3.02
4981 5131 2.843701 CAGCCTGTTCTGTTCTGTTCT 58.156 47.619 0.00 0.00 0.00 3.01
4982 5132 1.265365 GCAGCCTGTTCTGTTCTGTTC 59.735 52.381 0.00 0.00 36.49 3.18
4983 5133 1.312815 GCAGCCTGTTCTGTTCTGTT 58.687 50.000 0.00 0.00 36.49 3.16
4984 5134 0.536006 GGCAGCCTGTTCTGTTCTGT 60.536 55.000 3.29 0.00 36.49 3.41
4985 5135 1.239968 GGGCAGCCTGTTCTGTTCTG 61.240 60.000 12.43 0.00 36.49 3.02
4986 5136 1.073897 GGGCAGCCTGTTCTGTTCT 59.926 57.895 12.43 0.00 36.49 3.01
5083 5233 3.088532 CCAACAGGCAAGGCAAATACTA 58.911 45.455 0.00 0.00 0.00 1.82
5084 5234 1.895131 CCAACAGGCAAGGCAAATACT 59.105 47.619 0.00 0.00 0.00 2.12
5085 5235 1.618343 ACCAACAGGCAAGGCAAATAC 59.382 47.619 0.00 0.00 0.00 1.89
5201 5359 3.287867 AATACTAGACCCTCCGAACGA 57.712 47.619 0.00 0.00 0.00 3.85
5202 5360 5.458891 CAATAATACTAGACCCTCCGAACG 58.541 45.833 0.00 0.00 0.00 3.95
5203 5361 5.010820 AGCAATAATACTAGACCCTCCGAAC 59.989 44.000 0.00 0.00 0.00 3.95
5204 5362 5.145564 AGCAATAATACTAGACCCTCCGAA 58.854 41.667 0.00 0.00 0.00 4.30
5205 5363 4.737578 AGCAATAATACTAGACCCTCCGA 58.262 43.478 0.00 0.00 0.00 4.55
5206 5364 5.470047 AAGCAATAATACTAGACCCTCCG 57.530 43.478 0.00 0.00 0.00 4.63
5207 5365 5.010820 ACGAAGCAATAATACTAGACCCTCC 59.989 44.000 0.00 0.00 0.00 4.30
5208 5366 6.016108 AGACGAAGCAATAATACTAGACCCTC 60.016 42.308 0.00 0.00 0.00 4.30
5209 5367 5.834204 AGACGAAGCAATAATACTAGACCCT 59.166 40.000 0.00 0.00 0.00 4.34
5210 5368 5.921408 CAGACGAAGCAATAATACTAGACCC 59.079 44.000 0.00 0.00 0.00 4.46
5211 5369 5.402867 GCAGACGAAGCAATAATACTAGACC 59.597 44.000 0.00 0.00 0.00 3.85
5212 5370 5.115773 CGCAGACGAAGCAATAATACTAGAC 59.884 44.000 0.00 0.00 43.93 2.59
5213 5371 5.212934 CGCAGACGAAGCAATAATACTAGA 58.787 41.667 0.00 0.00 43.93 2.43
5214 5372 4.976731 ACGCAGACGAAGCAATAATACTAG 59.023 41.667 0.00 0.00 43.93 2.57
5215 5373 4.738252 CACGCAGACGAAGCAATAATACTA 59.262 41.667 0.00 0.00 43.93 1.82
5216 5374 3.551890 CACGCAGACGAAGCAATAATACT 59.448 43.478 0.00 0.00 43.93 2.12
5217 5375 3.841372 GCACGCAGACGAAGCAATAATAC 60.841 47.826 0.00 0.00 43.93 1.89
5218 5376 2.284150 GCACGCAGACGAAGCAATAATA 59.716 45.455 0.00 0.00 43.93 0.98
5219 5377 1.062587 GCACGCAGACGAAGCAATAAT 59.937 47.619 0.00 0.00 43.93 1.28
5220 5378 0.442310 GCACGCAGACGAAGCAATAA 59.558 50.000 0.00 0.00 43.93 1.40
5221 5379 0.389817 AGCACGCAGACGAAGCAATA 60.390 50.000 0.00 0.00 43.93 1.90
5222 5380 1.630244 GAGCACGCAGACGAAGCAAT 61.630 55.000 0.00 0.00 43.93 3.56
5223 5381 2.280119 AGCACGCAGACGAAGCAA 60.280 55.556 0.00 0.00 43.93 3.91
5224 5382 2.734723 GAGCACGCAGACGAAGCA 60.735 61.111 0.00 0.00 43.93 3.91
5225 5383 3.482783 GGAGCACGCAGACGAAGC 61.483 66.667 0.00 0.00 43.93 3.86
5226 5384 2.811317 GGGAGCACGCAGACGAAG 60.811 66.667 0.00 0.00 43.93 3.79
5227 5385 4.373116 GGGGAGCACGCAGACGAA 62.373 66.667 0.00 0.00 43.93 3.85
5283 5446 7.380602 CAGAATAAGAAAAGCCAGAAAACTGTG 59.619 37.037 0.00 0.00 0.00 3.66
5310 5473 6.803154 AATAGGAATGCCGACTAAATAAGC 57.197 37.500 0.00 0.00 39.96 3.09
5311 5474 8.443937 GCTAAATAGGAATGCCGACTAAATAAG 58.556 37.037 0.00 0.00 39.96 1.73
5312 5475 7.117236 CGCTAAATAGGAATGCCGACTAAATAA 59.883 37.037 0.00 0.00 39.96 1.40
5313 5476 6.588756 CGCTAAATAGGAATGCCGACTAAATA 59.411 38.462 0.00 0.00 39.96 1.40
5314 5477 5.408604 CGCTAAATAGGAATGCCGACTAAAT 59.591 40.000 0.00 0.00 39.96 1.40
5315 5478 4.748102 CGCTAAATAGGAATGCCGACTAAA 59.252 41.667 0.00 0.00 39.96 1.85
5316 5479 4.304110 CGCTAAATAGGAATGCCGACTAA 58.696 43.478 0.00 0.00 39.96 2.24
5317 5480 3.859627 GCGCTAAATAGGAATGCCGACTA 60.860 47.826 0.00 0.00 39.96 2.59
5318 5481 2.755650 CGCTAAATAGGAATGCCGACT 58.244 47.619 0.00 0.00 39.96 4.18
5319 5482 1.194772 GCGCTAAATAGGAATGCCGAC 59.805 52.381 0.00 0.00 39.96 4.79
5320 5483 1.070134 AGCGCTAAATAGGAATGCCGA 59.930 47.619 8.99 0.00 39.96 5.54
5321 5484 1.195448 CAGCGCTAAATAGGAATGCCG 59.805 52.381 10.99 0.00 39.96 5.69
5322 5485 1.068954 GCAGCGCTAAATAGGAATGCC 60.069 52.381 10.99 0.00 0.00 4.40
5323 5486 1.603802 TGCAGCGCTAAATAGGAATGC 59.396 47.619 10.99 6.82 0.00 3.56
5324 5487 4.494350 AATGCAGCGCTAAATAGGAATG 57.506 40.909 10.99 0.00 0.00 2.67
5325 5488 5.063204 TGTAATGCAGCGCTAAATAGGAAT 58.937 37.500 10.99 0.00 0.00 3.01
5326 5489 4.447290 TGTAATGCAGCGCTAAATAGGAA 58.553 39.130 10.99 0.00 0.00 3.36
5327 5490 4.058124 CTGTAATGCAGCGCTAAATAGGA 58.942 43.478 10.99 0.00 38.52 2.94
5328 5491 4.395581 CTGTAATGCAGCGCTAAATAGG 57.604 45.455 10.99 0.00 38.52 2.57
5351 5514 1.135108 GCGCCCATTTGCAAATTGC 59.865 52.632 21.95 23.18 45.29 3.56
5352 5515 1.646624 GGGCGCCCATTTGCAAATTG 61.647 55.000 40.73 18.01 35.81 2.32
5353 5516 1.377072 GGGCGCCCATTTGCAAATT 60.377 52.632 40.73 5.19 35.81 1.82
5354 5517 2.268600 GGGCGCCCATTTGCAAAT 59.731 55.556 40.73 18.99 35.81 2.32
5355 5518 4.370066 CGGGCGCCCATTTGCAAA 62.370 61.111 42.78 15.44 35.37 3.68
5358 5521 3.444805 TAACGGGCGCCCATTTGC 61.445 61.111 42.78 17.27 35.37 3.68
5359 5522 2.265073 CTGTAACGGGCGCCCATTTG 62.265 60.000 42.78 29.25 35.37 2.32
5360 5523 2.034376 TGTAACGGGCGCCCATTT 59.966 55.556 42.78 34.51 35.37 2.32
5361 5524 2.437716 CTGTAACGGGCGCCCATT 60.438 61.111 42.78 37.48 35.37 3.16
5362 5525 3.712907 ACTGTAACGGGCGCCCAT 61.713 61.111 42.78 32.50 35.37 4.00
5363 5526 4.690719 CACTGTAACGGGCGCCCA 62.691 66.667 42.78 23.71 35.37 5.36
5366 5529 3.350612 TTGCACTGTAACGGGCGC 61.351 61.111 0.00 0.00 0.00 6.53
5367 5530 1.503818 AAGTTGCACTGTAACGGGCG 61.504 55.000 4.56 0.00 33.39 6.13
5368 5531 0.040425 CAAGTTGCACTGTAACGGGC 60.040 55.000 4.56 0.00 33.39 6.13
5369 5532 0.040425 GCAAGTTGCACTGTAACGGG 60.040 55.000 22.90 2.85 44.26 5.28
5370 5533 3.454941 GCAAGTTGCACTGTAACGG 57.545 52.632 22.90 3.15 44.26 4.44
5380 5543 2.670210 GCGCCCATTTGCAAGTTGC 61.670 57.895 21.17 21.17 45.29 4.17
5381 5544 2.028733 GGCGCCCATTTGCAAGTTG 61.029 57.895 18.11 0.00 0.00 3.16
5382 5545 2.209315 AGGCGCCCATTTGCAAGTT 61.209 52.632 26.15 0.00 0.00 2.66
5383 5546 2.601367 AGGCGCCCATTTGCAAGT 60.601 55.556 26.15 0.00 0.00 3.16
5384 5547 2.125832 CAGGCGCCCATTTGCAAG 60.126 61.111 26.15 0.00 0.00 4.01
5385 5548 4.376176 GCAGGCGCCCATTTGCAA 62.376 61.111 27.85 0.00 36.59 4.08
5387 5550 4.807039 CTGCAGGCGCCCATTTGC 62.807 66.667 26.57 26.57 37.32 3.68
5388 5551 4.807039 GCTGCAGGCGCCCATTTG 62.807 66.667 26.15 16.62 37.32 2.32
5394 5557 4.410743 GAAACTGCTGCAGGCGCC 62.411 66.667 31.00 21.89 45.43 6.53
5395 5558 1.372087 ATAGAAACTGCTGCAGGCGC 61.372 55.000 31.00 19.30 45.43 6.53
5396 5559 1.939974 TATAGAAACTGCTGCAGGCG 58.060 50.000 31.00 10.13 45.43 5.52
5397 5560 4.907879 AAATATAGAAACTGCTGCAGGC 57.092 40.909 31.00 19.95 42.22 4.85
5398 5561 6.096001 AGGAAAAATATAGAAACTGCTGCAGG 59.904 38.462 31.00 14.81 35.51 4.85
5399 5562 7.093322 AGGAAAAATATAGAAACTGCTGCAG 57.907 36.000 27.02 27.02 37.52 4.41
5400 5563 7.362920 GGAAGGAAAAATATAGAAACTGCTGCA 60.363 37.037 0.88 0.88 0.00 4.41
5401 5564 6.975197 GGAAGGAAAAATATAGAAACTGCTGC 59.025 38.462 0.00 0.00 0.00 5.25
5402 5565 8.186821 CAGGAAGGAAAAATATAGAAACTGCTG 58.813 37.037 0.00 0.00 0.00 4.41
5403 5566 7.890655 ACAGGAAGGAAAAATATAGAAACTGCT 59.109 33.333 0.00 0.00 0.00 4.24
5404 5567 8.056407 ACAGGAAGGAAAAATATAGAAACTGC 57.944 34.615 0.00 0.00 0.00 4.40
5413 5576 9.471084 CGTTTACAAAACAGGAAGGAAAAATAT 57.529 29.630 3.68 0.00 0.00 1.28
5414 5577 8.468399 ACGTTTACAAAACAGGAAGGAAAAATA 58.532 29.630 3.68 0.00 0.00 1.40
5415 5578 7.324935 ACGTTTACAAAACAGGAAGGAAAAAT 58.675 30.769 3.68 0.00 0.00 1.82
5416 5579 6.689554 ACGTTTACAAAACAGGAAGGAAAAA 58.310 32.000 3.68 0.00 0.00 1.94
5417 5580 6.072064 TGACGTTTACAAAACAGGAAGGAAAA 60.072 34.615 0.00 0.00 0.00 2.29
5418 5581 5.415077 TGACGTTTACAAAACAGGAAGGAAA 59.585 36.000 0.00 0.00 0.00 3.13
5419 5582 4.942483 TGACGTTTACAAAACAGGAAGGAA 59.058 37.500 0.00 0.00 0.00 3.36
5420 5583 4.515361 TGACGTTTACAAAACAGGAAGGA 58.485 39.130 0.00 0.00 0.00 3.36
5421 5584 4.886247 TGACGTTTACAAAACAGGAAGG 57.114 40.909 0.00 0.00 0.00 3.46
5422 5585 7.569677 TTTTTGACGTTTACAAAACAGGAAG 57.430 32.000 11.80 0.00 43.62 3.46
5443 5606 1.043022 CCCTTGGCAGCACTCTTTTT 58.957 50.000 0.00 0.00 0.00 1.94
5444 5607 0.185901 TCCCTTGGCAGCACTCTTTT 59.814 50.000 0.00 0.00 0.00 2.27
5445 5608 0.251077 CTCCCTTGGCAGCACTCTTT 60.251 55.000 0.00 0.00 0.00 2.52
5446 5609 1.377994 CTCCCTTGGCAGCACTCTT 59.622 57.895 0.00 0.00 0.00 2.85
5447 5610 1.422161 AACTCCCTTGGCAGCACTCT 61.422 55.000 0.00 0.00 0.00 3.24
5448 5611 0.957888 GAACTCCCTTGGCAGCACTC 60.958 60.000 0.00 0.00 0.00 3.51
5449 5612 1.073897 GAACTCCCTTGGCAGCACT 59.926 57.895 0.00 0.00 0.00 4.40
5450 5613 2.328099 CGAACTCCCTTGGCAGCAC 61.328 63.158 0.00 0.00 0.00 4.40
5451 5614 2.032528 CGAACTCCCTTGGCAGCA 59.967 61.111 0.00 0.00 0.00 4.41
5452 5615 1.302511 TTCGAACTCCCTTGGCAGC 60.303 57.895 0.00 0.00 0.00 5.25
5453 5616 0.035458 AGTTCGAACTCCCTTGGCAG 59.965 55.000 24.93 0.00 32.86 4.85
5454 5617 2.142220 AGTTCGAACTCCCTTGGCA 58.858 52.632 24.93 0.00 32.86 4.92
5463 5626 3.251571 GAATAGGTTGCGAGTTCGAACT 58.748 45.455 30.12 30.12 43.02 3.01
5464 5627 2.027688 CGAATAGGTTGCGAGTTCGAAC 59.972 50.000 20.71 20.71 42.94 3.95
5465 5628 2.256174 CGAATAGGTTGCGAGTTCGAA 58.744 47.619 5.60 0.00 42.94 3.71
5466 5629 1.200716 ACGAATAGGTTGCGAGTTCGA 59.799 47.619 12.03 0.00 42.94 3.71
5467 5630 1.625616 ACGAATAGGTTGCGAGTTCG 58.374 50.000 4.50 4.50 45.01 3.95
5468 5631 2.093783 CCAACGAATAGGTTGCGAGTTC 59.906 50.000 0.00 0.00 44.58 3.01
5469 5632 2.073816 CCAACGAATAGGTTGCGAGTT 58.926 47.619 0.00 0.00 44.58 3.01
5470 5633 1.674817 CCCAACGAATAGGTTGCGAGT 60.675 52.381 0.00 0.00 44.58 4.18
5471 5634 1.006832 CCCAACGAATAGGTTGCGAG 58.993 55.000 0.00 0.00 44.58 5.03
5472 5635 0.609151 TCCCAACGAATAGGTTGCGA 59.391 50.000 0.00 0.00 44.58 5.10
5473 5636 1.006832 CTCCCAACGAATAGGTTGCG 58.993 55.000 0.00 0.00 44.58 4.85
5474 5637 0.733150 GCTCCCAACGAATAGGTTGC 59.267 55.000 0.00 0.00 44.58 4.17
5475 5638 1.006832 CGCTCCCAACGAATAGGTTG 58.993 55.000 0.00 0.00 45.32 3.77
5476 5639 0.743345 GCGCTCCCAACGAATAGGTT 60.743 55.000 0.00 0.00 0.00 3.50
5477 5640 1.153429 GCGCTCCCAACGAATAGGT 60.153 57.895 0.00 0.00 0.00 3.08
5478 5641 0.876342 GAGCGCTCCCAACGAATAGG 60.876 60.000 27.22 0.00 0.00 2.57
5479 5642 1.209275 CGAGCGCTCCCAACGAATAG 61.209 60.000 30.66 9.45 0.00 1.73
5480 5643 1.226859 CGAGCGCTCCCAACGAATA 60.227 57.895 30.66 0.00 0.00 1.75
5481 5644 2.509336 CGAGCGCTCCCAACGAAT 60.509 61.111 30.66 0.00 0.00 3.34
5482 5645 4.735132 CCGAGCGCTCCCAACGAA 62.735 66.667 30.66 0.00 0.00 3.85
5492 5655 2.453638 GGTTTCTACAGCCGAGCGC 61.454 63.158 0.00 0.00 37.98 5.92
5493 5656 1.080093 TGGTTTCTACAGCCGAGCG 60.080 57.895 0.00 0.00 0.00 5.03
5494 5657 1.352156 CGTGGTTTCTACAGCCGAGC 61.352 60.000 0.00 0.00 0.00 5.03
5495 5658 1.352156 GCGTGGTTTCTACAGCCGAG 61.352 60.000 0.00 0.00 0.00 4.63
5496 5659 1.373748 GCGTGGTTTCTACAGCCGA 60.374 57.895 0.00 0.00 0.00 5.54
5497 5660 1.225376 TTGCGTGGTTTCTACAGCCG 61.225 55.000 0.00 0.00 0.00 5.52
5498 5661 1.130561 GATTGCGTGGTTTCTACAGCC 59.869 52.381 0.00 0.00 0.00 4.85
5499 5662 1.130561 GGATTGCGTGGTTTCTACAGC 59.869 52.381 0.00 0.00 0.00 4.40
5500 5663 2.159627 GTGGATTGCGTGGTTTCTACAG 59.840 50.000 0.00 0.00 0.00 2.74
5501 5664 2.147958 GTGGATTGCGTGGTTTCTACA 58.852 47.619 0.00 0.00 0.00 2.74
5502 5665 2.415512 GAGTGGATTGCGTGGTTTCTAC 59.584 50.000 0.00 0.00 0.00 2.59
5503 5666 2.695359 GAGTGGATTGCGTGGTTTCTA 58.305 47.619 0.00 0.00 0.00 2.10
5504 5667 1.523758 GAGTGGATTGCGTGGTTTCT 58.476 50.000 0.00 0.00 0.00 2.52
5505 5668 0.165944 CGAGTGGATTGCGTGGTTTC 59.834 55.000 0.00 0.00 0.00 2.78
5506 5669 1.852067 GCGAGTGGATTGCGTGGTTT 61.852 55.000 0.00 0.00 0.00 3.27
5507 5670 2.325082 GCGAGTGGATTGCGTGGTT 61.325 57.895 0.00 0.00 0.00 3.67
5508 5671 2.742372 GCGAGTGGATTGCGTGGT 60.742 61.111 0.00 0.00 0.00 4.16
5509 5672 2.434884 AGCGAGTGGATTGCGTGG 60.435 61.111 0.00 0.00 43.82 4.94
5510 5673 2.780643 CAGCGAGTGGATTGCGTG 59.219 61.111 0.00 0.00 43.82 5.34
5519 5682 1.466167 CAATCCTTTCACCAGCGAGTG 59.534 52.381 3.02 3.02 39.20 3.51
5520 5683 1.072331 ACAATCCTTTCACCAGCGAGT 59.928 47.619 0.00 0.00 0.00 4.18
5521 5684 1.813513 ACAATCCTTTCACCAGCGAG 58.186 50.000 0.00 0.00 0.00 5.03
5522 5685 2.151202 GAACAATCCTTTCACCAGCGA 58.849 47.619 0.00 0.00 0.00 4.93
5523 5686 1.879380 TGAACAATCCTTTCACCAGCG 59.121 47.619 0.00 0.00 0.00 5.18
5524 5687 4.525912 AATGAACAATCCTTTCACCAGC 57.474 40.909 0.00 0.00 35.82 4.85
5525 5688 7.661040 AGTAAAATGAACAATCCTTTCACCAG 58.339 34.615 0.00 0.00 35.82 4.00
5526 5689 7.595819 AGTAAAATGAACAATCCTTTCACCA 57.404 32.000 0.00 0.00 35.82 4.17
5527 5690 8.360390 AGAAGTAAAATGAACAATCCTTTCACC 58.640 33.333 0.00 0.00 35.82 4.02
5528 5691 9.750125 AAGAAGTAAAATGAACAATCCTTTCAC 57.250 29.630 0.00 0.00 35.82 3.18
5559 5722 9.683069 GGAATAAACCGAAGTATATAGAACGAA 57.317 33.333 0.00 0.00 0.00 3.85
5560 5723 9.071276 AGGAATAAACCGAAGTATATAGAACGA 57.929 33.333 0.00 0.00 34.73 3.85
5561 5724 9.688592 AAGGAATAAACCGAAGTATATAGAACG 57.311 33.333 0.00 0.00 34.73 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.