Multiple sequence alignment - TraesCS4B01G192200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G192200 chr4B 100.000 5564 0 0 1 5564 415117922 415123485 0.000000e+00 10275.0
1 TraesCS4B01G192200 chr4B 79.931 289 44 13 5205 5487 122275650 122275370 3.400000e-47 200.0
2 TraesCS4B01G192200 chr4D 95.761 1840 70 5 1765 3602 336839194 336841027 0.000000e+00 2959.0
3 TraesCS4B01G192200 chr4D 92.765 1548 80 13 1 1535 336837360 336838888 0.000000e+00 2209.0
4 TraesCS4B01G192200 chr4D 97.710 655 12 1 3924 4575 336841093 336841747 0.000000e+00 1123.0
5 TraesCS4B01G192200 chr4D 87.032 347 36 9 5205 5548 390919643 390919983 3.140000e-102 383.0
6 TraesCS4B01G192200 chr4D 92.829 251 14 3 4869 5116 336842346 336842595 1.470000e-95 361.0
7 TraesCS4B01G192200 chr4D 89.600 125 11 1 4606 4728 336842017 336842141 2.080000e-34 158.0
8 TraesCS4B01G192200 chr4D 85.950 121 15 1 41 159 389517930 389517810 1.630000e-25 128.0
9 TraesCS4B01G192200 chr4D 93.827 81 3 2 1555 1634 336839002 336839081 2.720000e-23 121.0
10 TraesCS4B01G192200 chr4D 84.677 124 14 3 45 163 31442363 31442486 9.790000e-23 119.0
11 TraesCS4B01G192200 chr4D 88.506 87 4 6 1695 1775 336839083 336839169 3.550000e-17 100.0
12 TraesCS4B01G192200 chr4D 88.571 70 6 2 4724 4791 336842169 336842238 3.570000e-12 84.2
13 TraesCS4B01G192200 chr4D 96.875 32 1 0 1633 1664 497887372 497887341 3.000000e-03 54.7
14 TraesCS4B01G192200 chr4A 94.579 1697 74 9 1765 3458 136619724 136618043 0.000000e+00 2608.0
15 TraesCS4B01G192200 chr4A 93.988 998 39 8 515 1493 136620918 136619923 0.000000e+00 1491.0
16 TraesCS4B01G192200 chr4A 94.988 838 28 8 3863 4689 136617532 136616698 0.000000e+00 1303.0
17 TraesCS4B01G192200 chr4A 89.922 387 35 3 1 387 136621967 136621585 3.870000e-136 496.0
18 TraesCS4B01G192200 chr4A 89.051 274 22 5 4850 5116 136616546 136616274 3.210000e-87 333.0
19 TraesCS4B01G192200 chr4A 93.431 137 7 2 3468 3602 136617672 136617536 9.450000e-48 202.0
20 TraesCS4B01G192200 chr4A 94.949 99 3 2 1540 1637 136619930 136619833 2.680000e-33 154.0
21 TraesCS4B01G192200 chr4A 91.667 72 3 2 1695 1763 136619834 136619763 4.590000e-16 97.1
22 TraesCS4B01G192200 chr5D 88.473 347 30 10 5205 5547 530824090 530823750 1.440000e-110 411.0
23 TraesCS4B01G192200 chr5D 91.603 262 19 2 3603 3861 7038591 7038330 5.300000e-95 359.0
24 TraesCS4B01G192200 chr5D 98.864 88 1 0 5117 5204 530824278 530824191 2.080000e-34 158.0
25 TraesCS4B01G192200 chr7D 93.750 256 13 1 3603 3855 598726713 598726968 1.130000e-101 381.0
26 TraesCS4B01G192200 chr7D 93.023 258 15 2 3603 3857 45518464 45518721 1.890000e-99 374.0
27 TraesCS4B01G192200 chr7D 92.996 257 15 2 3603 3856 571977886 571977630 6.810000e-99 372.0
28 TraesCS4B01G192200 chr7D 87.926 323 20 9 5205 5508 78027858 78028180 4.100000e-96 363.0
29 TraesCS4B01G192200 chr7D 92.248 258 15 3 3602 3855 11726763 11727019 1.470000e-95 361.0
30 TraesCS4B01G192200 chr7B 92.996 257 15 1 3602 3855 743678418 743678162 6.810000e-99 372.0
31 TraesCS4B01G192200 chr7B 81.525 341 52 11 5205 5541 213481867 213482200 2.550000e-68 270.0
32 TraesCS4B01G192200 chr7B 100.000 29 0 0 1673 1701 674585614 674585586 3.000000e-03 54.7
33 TraesCS4B01G192200 chr5B 92.278 259 17 1 3601 3856 396146619 396146361 1.140000e-96 364.0
34 TraesCS4B01G192200 chr5B 86.076 79 11 0 5115 5193 666954936 666955014 9.930000e-13 86.1
35 TraesCS4B01G192200 chr5B 85.714 77 11 0 5117 5193 640264710 640264786 1.280000e-11 82.4
36 TraesCS4B01G192200 chr5B 84.615 78 12 0 5116 5193 537835606 537835683 1.660000e-10 78.7
37 TraesCS4B01G192200 chr3D 92.578 256 16 1 3604 3856 452015711 452015966 1.140000e-96 364.0
38 TraesCS4B01G192200 chr3A 92.607 257 13 3 3602 3855 21277616 21277363 1.140000e-96 364.0
39 TraesCS4B01G192200 chr3A 85.345 116 14 2 51 163 653523838 653523953 3.520000e-22 117.0
40 TraesCS4B01G192200 chr7A 85.345 348 39 11 5205 5548 641985035 641985374 3.190000e-92 350.0
41 TraesCS4B01G192200 chr7A 96.491 57 1 1 5117 5172 641984899 641984955 5.930000e-15 93.5
42 TraesCS4B01G192200 chr2D 77.419 589 109 16 3979 4552 37251917 37251338 4.160000e-86 329.0
43 TraesCS4B01G192200 chr2D 81.897 348 47 13 5205 5548 36228547 36228882 4.240000e-71 279.0
44 TraesCS4B01G192200 chr2D 79.710 345 54 14 5210 5548 38550149 38549815 9.320000e-58 235.0
45 TraesCS4B01G192200 chr2D 86.325 117 11 4 51 163 6737450 6737335 7.570000e-24 122.0
46 TraesCS4B01G192200 chr2D 84.000 125 18 2 41 163 384258269 384258145 9.790000e-23 119.0
47 TraesCS4B01G192200 chr2D 91.379 58 5 0 3372 3429 254594414 254594357 4.620000e-11 80.5
48 TraesCS4B01G192200 chr2D 100.000 28 0 0 1673 1700 31733389 31733416 1.000000e-02 52.8
49 TraesCS4B01G192200 chr2A 76.020 588 119 14 3979 4552 42153027 42152448 9.120000e-73 285.0
50 TraesCS4B01G192200 chr2A 87.970 133 12 3 4904 5033 102679161 102679292 2.680000e-33 154.0
51 TraesCS4B01G192200 chr2A 86.567 134 15 2 4903 5033 197222097 197221964 1.620000e-30 145.0
52 TraesCS4B01G192200 chr6D 81.471 340 48 13 5210 5541 1620002 1619670 1.190000e-66 265.0
53 TraesCS4B01G192200 chr2B 84.192 291 23 15 5279 5548 360207942 360207654 1.540000e-65 261.0
54 TraesCS4B01G192200 chr2B 87.121 132 15 1 4904 5033 154500260 154500129 1.250000e-31 148.0
55 TraesCS4B01G192200 chr2B 86.667 135 14 3 4903 5033 154906849 154906983 4.490000e-31 147.0
56 TraesCS4B01G192200 chr3B 89.344 122 11 1 4914 5033 723149418 723149297 9.650000e-33 152.0
57 TraesCS4B01G192200 chr1A 87.313 134 14 2 4903 5033 372248587 372248454 3.470000e-32 150.0
58 TraesCS4B01G192200 chr1A 85.950 121 12 4 45 160 577839010 577839130 2.100000e-24 124.0
59 TraesCS4B01G192200 chr1A 82.014 139 25 0 4407 4545 392526455 392526593 9.790000e-23 119.0
60 TraesCS4B01G192200 chr1A 77.778 162 32 4 3982 4141 392526003 392526162 4.590000e-16 97.1
61 TraesCS4B01G192200 chr5A 86.567 134 15 2 4903 5033 10860721 10860588 1.620000e-30 145.0
62 TraesCS4B01G192200 chr1D 85.484 124 13 4 45 163 495268962 495268839 2.100000e-24 124.0
63 TraesCS4B01G192200 chr1D 80.576 139 27 0 4407 4545 312970145 312970283 2.120000e-19 108.0
64 TraesCS4B01G192200 chr1D 78.395 162 31 4 3982 4141 312969687 312969846 9.860000e-18 102.0
65 TraesCS4B01G192200 chr1B 78.947 171 32 4 3982 4150 423206031 423206199 4.560000e-21 113.0
66 TraesCS4B01G192200 chr6B 83.117 77 13 0 5117 5193 623173687 623173763 2.780000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G192200 chr4B 415117922 415123485 5563 False 10275.0000 10275 100.000000 1 5564 1 chr4B.!!$F1 5563
1 TraesCS4B01G192200 chr4D 336837360 336842595 5235 False 889.4000 2959 92.446125 1 5116 8 chr4D.!!$F3 5115
2 TraesCS4B01G192200 chr4A 136616274 136621967 5693 True 835.5125 2608 92.821875 1 5116 8 chr4A.!!$R1 5115
3 TraesCS4B01G192200 chr5D 530823750 530824278 528 True 284.5000 411 93.668500 5117 5547 2 chr5D.!!$R2 430
4 TraesCS4B01G192200 chr2D 37251338 37251917 579 True 329.0000 329 77.419000 3979 4552 1 chr2D.!!$R2 573
5 TraesCS4B01G192200 chr2A 42152448 42153027 579 True 285.0000 285 76.020000 3979 4552 1 chr2A.!!$R1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 1495 1.134371 CAGATTTTCTCCCCTCCGACC 60.134 57.143 0.00 0.00 0.0 4.79 F
1700 2359 0.032017 AGGACGGAGGGAGTAGCATT 60.032 55.000 0.00 0.00 0.0 3.56 F
2856 3556 0.178903 TGGCTACTGTGAGGAAGGGT 60.179 55.000 0.00 0.00 0.0 4.34 F
3632 4697 0.038166 TTCAGGACCATGGTTCAGCC 59.962 55.000 25.54 18.22 37.9 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2165 2863 0.252197 GTAAAGGGGATCGCTGTGGT 59.748 55.000 9.90 0.00 0.00 4.16 R
3613 4678 0.038166 GGCTGAACCATGGTCCTGAA 59.962 55.000 20.07 1.26 38.86 3.02 R
3802 4867 0.108804 ACCTACGCTCGACACCATTG 60.109 55.000 0.00 0.00 0.00 2.82 R
4708 6034 1.275291 TCCCTCTTCTTTACAGGCACG 59.725 52.381 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 6.785963 TCCTTCGGAGATACCCTTACATAAAT 59.214 38.462 0.00 0.00 35.04 1.40
119 120 6.410540 AGATTAGCCCTCAACTCTGTTTAAG 58.589 40.000 0.00 0.00 0.00 1.85
132 133 6.174049 ACTCTGTTTAAGACTCATTTAGCCC 58.826 40.000 0.00 0.00 0.00 5.19
144 145 3.527253 TCATTTAGCCCCCTCTCAAATCA 59.473 43.478 0.00 0.00 0.00 2.57
202 203 4.003648 AGTCCGCATTTAATAGCTATGGC 58.996 43.478 7.09 5.86 39.06 4.40
203 204 3.751175 GTCCGCATTTAATAGCTATGGCA 59.249 43.478 7.09 0.00 41.70 4.92
210 211 6.373779 CATTTAATAGCTATGGCACCTTTCG 58.626 40.000 7.09 0.00 41.70 3.46
230 231 6.820470 TTCGTTTATTTGTTTTGCTTCCAG 57.180 33.333 0.00 0.00 0.00 3.86
308 309 4.787551 ACACTAAACAAGGACCATTGTCA 58.212 39.130 9.02 2.28 42.49 3.58
358 465 5.651139 AGATTCACTTGTGAGCAATGCTTAT 59.349 36.000 9.91 0.00 39.88 1.73
364 471 2.032426 TGTGAGCAATGCTTATCATGCG 59.968 45.455 9.91 0.00 39.88 4.73
411 518 5.794687 TGTACGATACATCCTTTTGCAAG 57.205 39.130 0.00 0.00 32.89 4.01
417 524 5.276395 CGATACATCCTTTTGCAAGTAGACG 60.276 44.000 11.10 9.43 0.00 4.18
458 872 4.079253 AGTCAAAATCACACCCATACACC 58.921 43.478 0.00 0.00 0.00 4.16
484 898 9.144085 CATCAATAAGTATTCGACGCTTAAAAC 57.856 33.333 6.61 0.00 0.00 2.43
485 899 7.678226 TCAATAAGTATTCGACGCTTAAAACC 58.322 34.615 6.61 0.00 0.00 3.27
637 1185 1.565067 TACCCCGAAGAGGAAGGAAC 58.435 55.000 0.00 0.00 45.00 3.62
669 1217 3.229293 TGGTTCCACAATGATGAGCAAA 58.771 40.909 0.00 0.00 0.00 3.68
832 1380 2.743928 CACCTTCGGCTGCCACTC 60.744 66.667 20.29 0.00 0.00 3.51
870 1418 1.153046 CTTCCCAACCACACCACGT 60.153 57.895 0.00 0.00 0.00 4.49
885 1433 1.901948 ACGTGCCGTCTCTTCTCCA 60.902 57.895 0.00 0.00 33.69 3.86
934 1482 2.576191 TCCACCTTCCGGATCAGATTTT 59.424 45.455 4.15 0.00 0.00 1.82
947 1495 1.134371 CAGATTTTCTCCCCTCCGACC 60.134 57.143 0.00 0.00 0.00 4.79
949 1497 1.623542 ATTTTCTCCCCTCCGACCCG 61.624 60.000 0.00 0.00 0.00 5.28
1088 1636 3.591023 GAGGTGCAGGTTTAGTTCTCTC 58.409 50.000 0.00 0.00 0.00 3.20
1122 1670 2.978978 TGGATTCCTCAGAGTTGTTGGA 59.021 45.455 3.95 0.00 0.00 3.53
1167 1715 1.304713 CTTGCTGCAGGGATTGGGT 60.305 57.895 17.12 0.00 0.00 4.51
1306 1858 6.072508 TGTGATTTTGCTATCCAGAGTTTGTC 60.073 38.462 0.00 0.00 0.00 3.18
1307 1859 6.150140 GTGATTTTGCTATCCAGAGTTTGTCT 59.850 38.462 0.00 0.00 35.00 3.41
1605 2264 5.738619 TTATCCACAGAGACAGTTTGCTA 57.261 39.130 0.00 0.00 0.00 3.49
1634 2293 4.991687 AGTTCTGCAGTAGTAGCAACTTTC 59.008 41.667 14.67 0.00 42.17 2.62
1637 2296 5.710984 TCTGCAGTAGTAGCAACTTTCTAC 58.289 41.667 14.67 0.00 42.17 2.59
1638 2297 5.477291 TCTGCAGTAGTAGCAACTTTCTACT 59.523 40.000 14.67 6.39 46.01 2.57
1639 2298 5.710984 TGCAGTAGTAGCAACTTTCTACTC 58.289 41.667 4.58 0.00 43.92 2.59
1640 2299 5.103687 GCAGTAGTAGCAACTTTCTACTCC 58.896 45.833 4.58 0.00 43.92 3.85
1641 2300 5.652518 CAGTAGTAGCAACTTTCTACTCCC 58.347 45.833 4.58 0.00 43.92 4.30
1643 2302 5.653330 AGTAGTAGCAACTTTCTACTCCCTC 59.347 44.000 4.58 0.00 43.92 4.30
1644 2303 3.770388 AGTAGCAACTTTCTACTCCCTCC 59.230 47.826 0.00 0.00 42.01 4.30
1645 2304 1.550976 AGCAACTTTCTACTCCCTCCG 59.449 52.381 0.00 0.00 0.00 4.63
1646 2305 1.275573 GCAACTTTCTACTCCCTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
1647 2306 2.674462 GCAACTTTCTACTCCCTCCGTC 60.674 54.545 0.00 0.00 0.00 4.79
1648 2307 1.849977 ACTTTCTACTCCCTCCGTCC 58.150 55.000 0.00 0.00 0.00 4.79
1649 2308 1.112950 CTTTCTACTCCCTCCGTCCC 58.887 60.000 0.00 0.00 0.00 4.46
1650 2309 0.708802 TTTCTACTCCCTCCGTCCCT 59.291 55.000 0.00 0.00 0.00 4.20
1651 2310 0.708802 TTCTACTCCCTCCGTCCCTT 59.291 55.000 0.00 0.00 0.00 3.95
1652 2311 1.600058 TCTACTCCCTCCGTCCCTTA 58.400 55.000 0.00 0.00 0.00 2.69
1653 2312 1.925255 TCTACTCCCTCCGTCCCTTAA 59.075 52.381 0.00 0.00 0.00 1.85
1654 2313 2.517127 TCTACTCCCTCCGTCCCTTAAT 59.483 50.000 0.00 0.00 0.00 1.40
1655 2314 3.723681 TCTACTCCCTCCGTCCCTTAATA 59.276 47.826 0.00 0.00 0.00 0.98
1656 2315 3.632420 ACTCCCTCCGTCCCTTAATAT 57.368 47.619 0.00 0.00 0.00 1.28
1657 2316 4.754411 ACTCCCTCCGTCCCTTAATATA 57.246 45.455 0.00 0.00 0.00 0.86
1658 2317 5.083953 ACTCCCTCCGTCCCTTAATATAA 57.916 43.478 0.00 0.00 0.00 0.98
1659 2318 5.085219 ACTCCCTCCGTCCCTTAATATAAG 58.915 45.833 0.00 0.00 0.00 1.73
1660 2319 5.162903 ACTCCCTCCGTCCCTTAATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
1661 2320 5.912103 TCCCTCCGTCCCTTAATATAAGAT 58.088 41.667 0.00 0.00 0.00 2.40
1662 2321 5.956563 TCCCTCCGTCCCTTAATATAAGATC 59.043 44.000 0.00 0.00 0.00 2.75
1663 2322 5.163540 CCCTCCGTCCCTTAATATAAGATCG 60.164 48.000 0.00 1.71 0.00 3.69
1664 2323 5.418209 CCTCCGTCCCTTAATATAAGATCGT 59.582 44.000 0.00 0.00 0.00 3.73
1665 2324 6.600822 CCTCCGTCCCTTAATATAAGATCGTA 59.399 42.308 0.00 0.00 0.00 3.43
1666 2325 7.121759 CCTCCGTCCCTTAATATAAGATCGTAA 59.878 40.741 0.00 0.00 0.00 3.18
1667 2326 8.408043 TCCGTCCCTTAATATAAGATCGTAAA 57.592 34.615 0.00 0.00 0.00 2.01
1668 2327 8.517878 TCCGTCCCTTAATATAAGATCGTAAAG 58.482 37.037 0.00 0.00 0.00 1.85
1669 2328 8.517878 CCGTCCCTTAATATAAGATCGTAAAGA 58.482 37.037 0.00 0.00 0.00 2.52
1694 2353 9.810870 GATATTATATTATAGGACGGAGGGAGT 57.189 37.037 0.00 0.00 0.00 3.85
1697 2356 2.875094 TATAGGACGGAGGGAGTAGC 57.125 55.000 0.00 0.00 0.00 3.58
1698 2357 0.851469 ATAGGACGGAGGGAGTAGCA 59.149 55.000 0.00 0.00 0.00 3.49
1699 2358 0.851469 TAGGACGGAGGGAGTAGCAT 59.149 55.000 0.00 0.00 0.00 3.79
1700 2359 0.032017 AGGACGGAGGGAGTAGCATT 60.032 55.000 0.00 0.00 0.00 3.56
1741 2400 8.745590 GTGGTTATTTTAGAAAGCCTTGGATTA 58.254 33.333 0.00 0.00 0.00 1.75
1755 2414 4.585162 CCTTGGATTATAGTCACGGAGAGT 59.415 45.833 0.00 0.00 0.00 3.24
1756 2415 5.278561 CCTTGGATTATAGTCACGGAGAGTC 60.279 48.000 0.00 0.00 0.00 3.36
1757 2416 4.788679 TGGATTATAGTCACGGAGAGTCA 58.211 43.478 0.00 0.00 0.00 3.41
1758 2417 4.822350 TGGATTATAGTCACGGAGAGTCAG 59.178 45.833 0.00 0.00 0.00 3.51
1759 2418 5.064558 GGATTATAGTCACGGAGAGTCAGA 58.935 45.833 0.00 0.00 0.00 3.27
1760 2419 5.049267 GGATTATAGTCACGGAGAGTCAGAC 60.049 48.000 0.00 0.00 0.00 3.51
1761 2420 2.853235 TAGTCACGGAGAGTCAGACA 57.147 50.000 2.66 0.00 30.65 3.41
1762 2421 2.208132 AGTCACGGAGAGTCAGACAT 57.792 50.000 2.66 0.00 30.65 3.06
1776 2474 5.542779 AGTCAGACATTCACTAGGTTGTTC 58.457 41.667 2.66 0.00 0.00 3.18
1791 2489 4.336713 AGGTTGTTCAGTGAGAGCTTTTTC 59.663 41.667 0.00 0.00 0.00 2.29
2165 2863 3.433957 CACCATTTTATTCACGACCGACA 59.566 43.478 0.00 0.00 0.00 4.35
2196 2894 1.202927 CCCCTTTACGCCATGATCCAT 60.203 52.381 0.00 0.00 0.00 3.41
2202 2900 5.649395 CCTTTACGCCATGATCCATCAATAT 59.351 40.000 0.00 0.00 40.69 1.28
2206 2904 3.379372 CGCCATGATCCATCAATATTCCC 59.621 47.826 0.00 0.00 40.69 3.97
2486 3184 7.224297 ACATGTGTGTATCTAGGAGTTTGTTT 58.776 34.615 0.00 0.00 36.63 2.83
2586 3284 5.639506 CGAGGATTTCAGCAATATAATCGGT 59.360 40.000 0.00 0.00 0.00 4.69
2724 3422 8.311836 CAGTACAGGAAAAAGGTACTATTCAGA 58.688 37.037 0.00 0.00 44.23 3.27
2725 3423 8.532819 AGTACAGGAAAAAGGTACTATTCAGAG 58.467 37.037 0.00 0.00 44.21 3.35
2856 3556 0.178903 TGGCTACTGTGAGGAAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
2925 3625 4.418392 GCTTTTTGAGTATCTGCATGGTG 58.582 43.478 0.00 0.00 34.92 4.17
2985 3686 3.568007 TCCCCTTTTCACAAATCTGTTCG 59.432 43.478 0.00 0.00 31.64 3.95
3080 3781 7.923878 GCAAAACCTTACATAAAAGTTTCTCCA 59.076 33.333 0.00 0.00 0.00 3.86
3094 3795 9.750125 AAAAGTTTCTCCAACAAATGAACTATC 57.250 29.630 0.00 0.00 37.93 2.08
3119 3820 1.471684 CCTGTTCAGCAAGCAGATTCC 59.528 52.381 4.82 0.00 32.39 3.01
3249 3951 5.117406 AGAGAAAAAGGAGTGTGGTCTTT 57.883 39.130 0.00 0.00 32.77 2.52
3308 4010 7.557358 ACCAGTGATGTGCTTCATATAATTTCA 59.443 33.333 0.00 0.00 36.83 2.69
3346 4048 4.514066 ACTCGATTTTAACAAAGCTTCCGT 59.486 37.500 0.00 0.00 0.00 4.69
3387 4089 0.797579 ACCTCCTTCCCCTAGAACCA 59.202 55.000 0.00 0.00 0.00 3.67
3535 4598 8.973378 GTTAGTTCAGAAGATATGAGTATGTGC 58.027 37.037 0.00 0.00 0.00 4.57
3537 4600 5.774498 TCAGAAGATATGAGTATGTGCGT 57.226 39.130 0.00 0.00 0.00 5.24
3581 4646 1.137594 AAATGGAGGTCGAACCCCCA 61.138 55.000 13.70 13.70 39.75 4.96
3610 4675 5.979288 AACTACATAAGTTGGAGAGACGT 57.021 39.130 0.00 0.00 46.90 4.34
3611 4676 5.312120 ACTACATAAGTTGGAGAGACGTG 57.688 43.478 0.00 0.00 38.77 4.49
3612 4677 5.008331 ACTACATAAGTTGGAGAGACGTGA 58.992 41.667 0.00 0.00 38.77 4.35
3613 4678 5.652891 ACTACATAAGTTGGAGAGACGTGAT 59.347 40.000 0.00 0.00 38.77 3.06
3614 4679 5.407407 ACATAAGTTGGAGAGACGTGATT 57.593 39.130 0.00 0.00 0.00 2.57
3616 4681 5.047306 ACATAAGTTGGAGAGACGTGATTCA 60.047 40.000 0.00 0.00 0.00 2.57
3617 4682 3.584406 AGTTGGAGAGACGTGATTCAG 57.416 47.619 0.00 0.00 0.00 3.02
3618 4683 2.232452 AGTTGGAGAGACGTGATTCAGG 59.768 50.000 0.00 4.86 0.00 3.86
3619 4684 2.215942 TGGAGAGACGTGATTCAGGA 57.784 50.000 13.00 0.00 0.00 3.86
3620 4685 1.819288 TGGAGAGACGTGATTCAGGAC 59.181 52.381 13.00 7.00 0.00 3.85
3622 4687 1.819288 GAGAGACGTGATTCAGGACCA 59.181 52.381 13.00 0.00 0.00 4.02
3623 4688 2.428890 GAGAGACGTGATTCAGGACCAT 59.571 50.000 13.00 0.00 0.00 3.55
3624 4689 2.167281 AGAGACGTGATTCAGGACCATG 59.833 50.000 13.00 0.00 0.00 3.66
3625 4690 1.208052 AGACGTGATTCAGGACCATGG 59.792 52.381 11.19 11.19 0.00 3.66
3626 4691 0.984230 ACGTGATTCAGGACCATGGT 59.016 50.000 19.89 19.89 0.00 3.55
3627 4692 1.351017 ACGTGATTCAGGACCATGGTT 59.649 47.619 20.85 0.38 0.00 3.67
3628 4693 2.009774 CGTGATTCAGGACCATGGTTC 58.990 52.381 20.85 18.49 0.00 3.62
3630 4695 3.012518 GTGATTCAGGACCATGGTTCAG 58.987 50.000 25.54 17.66 0.00 3.02
3631 4696 2.019984 GATTCAGGACCATGGTTCAGC 58.980 52.381 25.54 9.37 0.00 4.26
3632 4697 0.038166 TTCAGGACCATGGTTCAGCC 59.962 55.000 25.54 18.22 37.90 4.85
3635 4700 1.002624 GGACCATGGTTCAGCCGAA 60.003 57.895 20.85 0.00 41.21 4.30
3643 4708 3.855159 GTTCAGCCGAACCTATGGT 57.145 52.632 1.04 0.00 44.92 3.55
3644 4709 1.653151 GTTCAGCCGAACCTATGGTC 58.347 55.000 1.04 0.00 44.92 4.02
3645 4710 1.207329 GTTCAGCCGAACCTATGGTCT 59.793 52.381 1.04 0.00 44.92 3.85
3646 4711 2.429610 GTTCAGCCGAACCTATGGTCTA 59.570 50.000 1.04 0.00 44.92 2.59
3647 4712 2.958818 TCAGCCGAACCTATGGTCTAT 58.041 47.619 0.00 0.00 33.12 1.98
3648 4713 2.628178 TCAGCCGAACCTATGGTCTATG 59.372 50.000 0.00 0.00 33.12 2.23
3649 4714 1.344763 AGCCGAACCTATGGTCTATGC 59.655 52.381 0.00 0.00 33.12 3.14
3650 4715 1.608283 GCCGAACCTATGGTCTATGCC 60.608 57.143 0.00 0.00 33.12 4.40
3651 4716 1.336887 CCGAACCTATGGTCTATGCCG 60.337 57.143 0.00 0.00 33.12 5.69
3652 4717 1.340248 CGAACCTATGGTCTATGCCGT 59.660 52.381 0.00 0.00 33.12 5.68
3653 4718 2.555325 CGAACCTATGGTCTATGCCGTA 59.445 50.000 0.00 0.00 33.12 4.02
3654 4719 3.611057 CGAACCTATGGTCTATGCCGTAC 60.611 52.174 0.00 0.00 33.12 3.67
3655 4720 1.884579 ACCTATGGTCTATGCCGTACG 59.115 52.381 8.69 8.69 0.00 3.67
3656 4721 2.156917 CCTATGGTCTATGCCGTACGA 58.843 52.381 18.76 0.00 0.00 3.43
3657 4722 2.753452 CCTATGGTCTATGCCGTACGAT 59.247 50.000 18.76 5.70 0.00 3.73
3658 4723 3.192844 CCTATGGTCTATGCCGTACGATT 59.807 47.826 18.76 3.24 0.00 3.34
3659 4724 3.746045 ATGGTCTATGCCGTACGATTT 57.254 42.857 18.76 2.85 0.00 2.17
3660 4725 4.859304 ATGGTCTATGCCGTACGATTTA 57.141 40.909 18.76 3.95 0.00 1.40
3661 4726 4.652421 TGGTCTATGCCGTACGATTTAA 57.348 40.909 18.76 0.00 0.00 1.52
3662 4727 4.362279 TGGTCTATGCCGTACGATTTAAC 58.638 43.478 18.76 7.41 0.00 2.01
3663 4728 4.142204 TGGTCTATGCCGTACGATTTAACA 60.142 41.667 18.76 5.25 0.00 2.41
3664 4729 4.986659 GGTCTATGCCGTACGATTTAACAT 59.013 41.667 18.76 11.95 0.00 2.71
3665 4730 5.118203 GGTCTATGCCGTACGATTTAACATC 59.882 44.000 18.76 0.00 0.00 3.06
3666 4731 5.118203 GTCTATGCCGTACGATTTAACATCC 59.882 44.000 18.76 0.02 0.00 3.51
3667 4732 3.530265 TGCCGTACGATTTAACATCCT 57.470 42.857 18.76 0.00 0.00 3.24
3668 4733 4.652421 TGCCGTACGATTTAACATCCTA 57.348 40.909 18.76 0.00 0.00 2.94
3669 4734 4.362279 TGCCGTACGATTTAACATCCTAC 58.638 43.478 18.76 0.00 0.00 3.18
3670 4735 4.098349 TGCCGTACGATTTAACATCCTACT 59.902 41.667 18.76 0.00 0.00 2.57
3671 4736 5.299028 TGCCGTACGATTTAACATCCTACTA 59.701 40.000 18.76 0.00 0.00 1.82
3672 4737 5.626955 GCCGTACGATTTAACATCCTACTAC 59.373 44.000 18.76 0.00 0.00 2.73
3673 4738 6.728200 CCGTACGATTTAACATCCTACTACA 58.272 40.000 18.76 0.00 0.00 2.74
3674 4739 7.365741 CCGTACGATTTAACATCCTACTACAT 58.634 38.462 18.76 0.00 0.00 2.29
3675 4740 7.325338 CCGTACGATTTAACATCCTACTACATG 59.675 40.741 18.76 0.00 0.00 3.21
3676 4741 7.859377 CGTACGATTTAACATCCTACTACATGT 59.141 37.037 10.44 2.69 34.58 3.21
3677 4742 8.965172 GTACGATTTAACATCCTACTACATGTG 58.035 37.037 9.11 0.93 33.38 3.21
3678 4743 6.984474 ACGATTTAACATCCTACTACATGTGG 59.016 38.462 9.11 8.41 33.38 4.17
3680 4745 6.630203 TTTAACATCCTACTACATGTGGGT 57.370 37.500 14.25 12.02 46.11 4.51
3681 4746 4.755266 AACATCCTACTACATGTGGGTC 57.245 45.455 14.25 0.00 46.11 4.46
3682 4747 3.995636 ACATCCTACTACATGTGGGTCT 58.004 45.455 14.25 0.00 46.11 3.85
3683 4748 3.706594 ACATCCTACTACATGTGGGTCTG 59.293 47.826 14.25 11.36 46.11 3.51
3684 4749 3.468071 TCCTACTACATGTGGGTCTGT 57.532 47.619 14.25 3.48 46.11 3.41
3685 4750 3.096852 TCCTACTACATGTGGGTCTGTG 58.903 50.000 14.25 0.00 46.11 3.66
3686 4751 3.096852 CCTACTACATGTGGGTCTGTGA 58.903 50.000 14.25 0.00 41.74 3.58
3687 4752 3.119101 CCTACTACATGTGGGTCTGTGAC 60.119 52.174 14.25 0.00 41.74 3.67
3688 4753 2.325484 ACTACATGTGGGTCTGTGACA 58.675 47.619 14.25 0.00 33.68 3.58
3689 4754 2.906389 ACTACATGTGGGTCTGTGACAT 59.094 45.455 14.25 0.00 33.68 3.06
3691 4756 0.806868 CATGTGGGTCTGTGACATGC 59.193 55.000 0.00 0.00 40.27 4.06
3692 4757 0.401356 ATGTGGGTCTGTGACATGCA 59.599 50.000 0.00 0.00 33.68 3.96
3693 4758 0.401356 TGTGGGTCTGTGACATGCAT 59.599 50.000 0.00 0.00 33.68 3.96
3694 4759 0.806868 GTGGGTCTGTGACATGCATG 59.193 55.000 25.09 25.09 33.68 4.06
3695 4760 0.961857 TGGGTCTGTGACATGCATGC 60.962 55.000 26.53 18.59 33.68 4.06
3696 4761 1.660560 GGGTCTGTGACATGCATGCC 61.661 60.000 26.53 16.86 33.68 4.40
3697 4762 0.961857 GGTCTGTGACATGCATGCCA 60.962 55.000 26.53 19.63 33.68 4.92
3698 4763 0.883153 GTCTGTGACATGCATGCCAA 59.117 50.000 26.53 9.48 32.09 4.52
3699 4764 0.883153 TCTGTGACATGCATGCCAAC 59.117 50.000 26.53 20.50 0.00 3.77
3700 4765 0.885879 CTGTGACATGCATGCCAACT 59.114 50.000 26.53 6.52 0.00 3.16
3701 4766 0.599060 TGTGACATGCATGCCAACTG 59.401 50.000 26.53 9.94 0.00 3.16
3702 4767 0.734942 GTGACATGCATGCCAACTGC 60.735 55.000 26.53 6.09 40.10 4.40
3739 4804 5.819825 CATGCATGGATCCTCATGAATAG 57.180 43.478 24.98 10.24 45.30 1.73
3740 4805 5.497474 CATGCATGGATCCTCATGAATAGA 58.503 41.667 24.98 0.00 45.30 1.98
3741 4806 4.903054 TGCATGGATCCTCATGAATAGAC 58.097 43.478 14.23 0.00 45.30 2.59
3742 4807 4.348754 TGCATGGATCCTCATGAATAGACA 59.651 41.667 14.23 0.00 45.30 3.41
3743 4808 5.013808 TGCATGGATCCTCATGAATAGACAT 59.986 40.000 14.23 0.00 45.30 3.06
3744 4809 5.354513 GCATGGATCCTCATGAATAGACATG 59.645 44.000 14.23 17.94 45.30 3.21
3745 4810 4.903054 TGGATCCTCATGAATAGACATGC 58.097 43.478 14.23 0.00 44.79 4.06
3746 4811 4.348754 TGGATCCTCATGAATAGACATGCA 59.651 41.667 14.23 0.00 44.79 3.96
3747 4812 5.013808 TGGATCCTCATGAATAGACATGCAT 59.986 40.000 14.23 0.00 44.79 3.96
3748 4813 5.354513 GGATCCTCATGAATAGACATGCATG 59.645 44.000 25.09 25.09 46.18 4.06
3749 4814 5.300411 TCCTCATGAATAGACATGCATGT 57.700 39.130 31.82 31.82 45.35 3.21
3795 4860 7.353414 CATATATGGATCCTAATGGACGTCT 57.647 40.000 16.46 0.00 46.51 4.18
3796 4861 8.465273 CATATATGGATCCTAATGGACGTCTA 57.535 38.462 16.46 10.40 46.51 2.59
3797 4862 8.572185 CATATATGGATCCTAATGGACGTCTAG 58.428 40.741 16.46 9.30 46.51 2.43
3798 4863 4.448720 TGGATCCTAATGGACGTCTAGA 57.551 45.455 16.46 3.13 46.51 2.43
3799 4864 4.800023 TGGATCCTAATGGACGTCTAGAA 58.200 43.478 16.46 0.47 46.51 2.10
3800 4865 5.205821 TGGATCCTAATGGACGTCTAGAAA 58.794 41.667 16.46 2.27 46.51 2.52
3801 4866 5.839063 TGGATCCTAATGGACGTCTAGAAAT 59.161 40.000 16.46 6.68 46.51 2.17
3802 4867 6.015350 TGGATCCTAATGGACGTCTAGAAATC 60.015 42.308 16.46 13.71 46.51 2.17
3803 4868 6.015350 GGATCCTAATGGACGTCTAGAAATCA 60.015 42.308 16.46 3.01 46.51 2.57
3804 4869 6.785337 TCCTAATGGACGTCTAGAAATCAA 57.215 37.500 16.46 0.00 37.46 2.57
3805 4870 7.361457 TCCTAATGGACGTCTAGAAATCAAT 57.639 36.000 16.46 0.00 37.46 2.57
3806 4871 7.210174 TCCTAATGGACGTCTAGAAATCAATG 58.790 38.462 16.46 0.00 37.46 2.82
3807 4872 6.425114 CCTAATGGACGTCTAGAAATCAATGG 59.575 42.308 16.46 3.66 34.57 3.16
3808 4873 4.819105 TGGACGTCTAGAAATCAATGGT 57.181 40.909 16.46 0.00 0.00 3.55
3809 4874 4.503910 TGGACGTCTAGAAATCAATGGTG 58.496 43.478 16.46 0.00 0.00 4.17
3810 4875 4.020573 TGGACGTCTAGAAATCAATGGTGT 60.021 41.667 16.46 0.00 0.00 4.16
3811 4876 4.567159 GGACGTCTAGAAATCAATGGTGTC 59.433 45.833 16.46 0.00 0.00 3.67
3812 4877 4.174009 ACGTCTAGAAATCAATGGTGTCG 58.826 43.478 0.00 0.00 0.00 4.35
3813 4878 4.082408 ACGTCTAGAAATCAATGGTGTCGA 60.082 41.667 0.00 0.00 0.00 4.20
3814 4879 4.500837 CGTCTAGAAATCAATGGTGTCGAG 59.499 45.833 0.00 0.00 0.00 4.04
3815 4880 4.268884 GTCTAGAAATCAATGGTGTCGAGC 59.731 45.833 0.00 0.00 0.00 5.03
3816 4881 2.002586 AGAAATCAATGGTGTCGAGCG 58.997 47.619 0.00 0.00 0.00 5.03
3817 4882 1.732259 GAAATCAATGGTGTCGAGCGT 59.268 47.619 0.00 0.00 0.00 5.07
3818 4883 2.665649 AATCAATGGTGTCGAGCGTA 57.334 45.000 0.00 0.00 0.00 4.42
3819 4884 2.209838 ATCAATGGTGTCGAGCGTAG 57.790 50.000 0.00 0.00 0.00 3.51
3820 4885 0.172578 TCAATGGTGTCGAGCGTAGG 59.827 55.000 0.00 0.00 0.00 3.18
3821 4886 0.108804 CAATGGTGTCGAGCGTAGGT 60.109 55.000 0.00 0.00 46.54 3.08
3822 4887 0.606604 AATGGTGTCGAGCGTAGGTT 59.393 50.000 0.00 0.00 39.88 3.50
3823 4888 0.172803 ATGGTGTCGAGCGTAGGTTC 59.827 55.000 0.00 0.00 39.88 3.62
3824 4889 1.513586 GGTGTCGAGCGTAGGTTCG 60.514 63.158 14.47 14.47 46.64 3.95
3825 4890 1.513586 GTGTCGAGCGTAGGTTCGG 60.514 63.158 19.24 3.89 45.52 4.30
3826 4891 2.578981 GTCGAGCGTAGGTTCGGC 60.579 66.667 19.24 15.13 45.52 5.54
3827 4892 2.749044 TCGAGCGTAGGTTCGGCT 60.749 61.111 19.24 0.00 45.52 5.52
3828 4893 2.579787 CGAGCGTAGGTTCGGCTG 60.580 66.667 13.05 0.00 42.33 4.85
3829 4894 2.882876 GAGCGTAGGTTCGGCTGA 59.117 61.111 0.00 0.00 39.88 4.26
3830 4895 1.214589 GAGCGTAGGTTCGGCTGAA 59.785 57.895 3.13 3.13 39.88 3.02
3854 4919 6.212955 ACCATGGTTCTGTAAAACATTTTCG 58.787 36.000 13.00 0.00 0.00 3.46
3902 4967 7.777095 AGAGACAGCTAGTTTGTTCCTATTAG 58.223 38.462 3.96 0.00 0.00 1.73
3903 4968 7.397761 AGAGACAGCTAGTTTGTTCCTATTAGT 59.602 37.037 3.96 0.00 0.00 2.24
3904 4969 8.591114 AGACAGCTAGTTTGTTCCTATTAGTA 57.409 34.615 3.96 0.00 0.00 1.82
3905 4970 8.468399 AGACAGCTAGTTTGTTCCTATTAGTAC 58.532 37.037 3.96 0.00 0.00 2.73
3906 4971 8.363761 ACAGCTAGTTTGTTCCTATTAGTACT 57.636 34.615 0.00 0.00 0.00 2.73
4488 5573 3.838271 GAGATCACGGCGCTGGGA 61.838 66.667 26.00 26.00 0.00 4.37
4642 5968 2.156917 TGCTGATCTTGCTTGTGGAAG 58.843 47.619 11.38 0.00 42.05 3.46
4649 5975 1.537202 CTTGCTTGTGGAAGTGGTAGC 59.463 52.381 0.00 0.00 36.95 3.58
4654 5980 0.766674 TGTGGAAGTGGTAGCCAGGT 60.767 55.000 0.00 0.00 32.34 4.00
4659 5985 2.623502 GGAAGTGGTAGCCAGGTAGAGA 60.624 54.545 0.00 0.00 32.34 3.10
4697 6023 3.565307 TCAGGATTGCAAAAGGTCAGTT 58.435 40.909 1.71 0.00 0.00 3.16
4708 6034 1.600916 GGTCAGTTGTGGGTGCTCC 60.601 63.158 0.00 0.00 0.00 4.70
4711 6037 2.111043 AGTTGTGGGTGCTCCGTG 59.889 61.111 0.00 0.00 38.76 4.94
4756 6116 6.972901 TGCACTACAGTTCTCATAATTCTACG 59.027 38.462 0.00 0.00 0.00 3.51
4761 6121 7.667043 ACAGTTCTCATAATTCTACGCAAAA 57.333 32.000 0.00 0.00 0.00 2.44
4768 6128 9.108284 TCTCATAATTCTACGCAAAATTCATGA 57.892 29.630 0.00 0.00 0.00 3.07
4769 6129 9.378597 CTCATAATTCTACGCAAAATTCATGAG 57.621 33.333 0.00 0.00 31.57 2.90
4770 6130 8.344831 TCATAATTCTACGCAAAATTCATGAGG 58.655 33.333 0.00 0.00 0.00 3.86
4779 6141 4.095334 GCAAAATTCATGAGGCCAATTTCC 59.905 41.667 5.01 0.00 30.19 3.13
4801 6163 1.403249 GCATGAACCATGTTGTCCAGC 60.403 52.381 0.00 0.00 43.10 4.85
4812 6243 1.118838 TTGTCCAGCCCCAAACAAAG 58.881 50.000 0.00 0.00 0.00 2.77
4860 6339 6.374333 ACTCAATGCTAATCGTACCAATTTGT 59.626 34.615 0.00 0.00 0.00 2.83
4867 6346 5.499139 AATCGTACCAATTTGTAGCATGG 57.501 39.130 0.00 0.00 38.91 3.66
4869 6348 3.936453 TCGTACCAATTTGTAGCATGGAC 59.064 43.478 0.00 0.00 36.75 4.02
4870 6349 3.938963 CGTACCAATTTGTAGCATGGACT 59.061 43.478 0.00 0.00 36.75 3.85
4871 6350 4.201812 CGTACCAATTTGTAGCATGGACTG 60.202 45.833 0.00 0.00 36.75 3.51
4873 6352 4.406456 ACCAATTTGTAGCATGGACTGAA 58.594 39.130 0.00 0.00 36.75 3.02
4874 6353 4.460382 ACCAATTTGTAGCATGGACTGAAG 59.540 41.667 0.00 0.00 36.75 3.02
5033 6519 2.588596 CACCACACAGCTGCGTGA 60.589 61.111 31.37 0.00 39.34 4.35
5034 6520 2.280389 ACCACACAGCTGCGTGAG 60.280 61.111 31.37 23.30 39.34 3.51
5047 6533 3.802613 CGTGAGCTCAACTGCTAGT 57.197 52.632 20.19 0.00 44.17 2.57
5048 6534 1.623359 CGTGAGCTCAACTGCTAGTC 58.377 55.000 20.19 1.16 44.17 2.59
5050 6536 1.273606 GTGAGCTCAACTGCTAGTCCA 59.726 52.381 20.19 0.00 44.17 4.02
5052 6538 1.821753 GAGCTCAACTGCTAGTCCAGA 59.178 52.381 9.40 0.00 44.17 3.86
5058 6544 1.762708 ACTGCTAGTCCAGAGAGCTC 58.237 55.000 5.27 5.27 37.12 4.09
5220 6806 7.937649 TCGCAGAAGCTACTAGTGAATATTAA 58.062 34.615 5.39 0.00 39.10 1.40
5284 6870 7.780008 ATTTATTGCGTATTACACTGTAGCA 57.220 32.000 0.00 0.00 0.00 3.49
5344 6930 2.771089 ACAGTTGACGTTCATGAGCAT 58.229 42.857 10.36 0.00 0.00 3.79
5523 7127 9.263538 TCATTGATTTTGAAAAAGGTTCATCAG 57.736 29.630 0.00 0.00 0.00 2.90
5529 7133 8.477984 TTTTGAAAAAGGTTCATCAGTTTGAG 57.522 30.769 0.00 0.00 0.00 3.02
5541 7145 8.749499 GTTCATCAGTTTGAGAAAAAGTTCATG 58.251 33.333 0.00 0.00 36.09 3.07
5542 7146 8.224389 TCATCAGTTTGAGAAAAAGTTCATGA 57.776 30.769 0.00 0.00 36.09 3.07
5543 7147 8.347771 TCATCAGTTTGAGAAAAAGTTCATGAG 58.652 33.333 0.00 0.00 36.09 2.90
5548 7152 9.358872 AGTTTGAGAAAAAGTTCATGAGTTTTC 57.641 29.630 21.83 21.83 39.40 2.29
5550 7154 8.915871 TTGAGAAAAAGTTCATGAGTTTTCAG 57.084 30.769 26.46 0.00 39.40 3.02
5551 7155 8.055279 TGAGAAAAAGTTCATGAGTTTTCAGT 57.945 30.769 26.46 16.14 39.40 3.41
5552 7156 8.522830 TGAGAAAAAGTTCATGAGTTTTCAGTT 58.477 29.630 26.46 15.69 39.40 3.16
5553 7157 8.917415 AGAAAAAGTTCATGAGTTTTCAGTTC 57.083 30.769 26.46 17.54 39.40 3.01
5555 7159 9.305925 GAAAAAGTTCATGAGTTTTCAGTTCAT 57.694 29.630 23.15 8.62 39.40 2.57
5556 7160 8.638685 AAAAGTTCATGAGTTTTCAGTTCATG 57.361 30.769 10.56 7.24 45.96 3.07
5557 7161 6.323203 AGTTCATGAGTTTTCAGTTCATGG 57.677 37.500 12.23 0.00 45.12 3.66
5558 7162 6.064060 AGTTCATGAGTTTTCAGTTCATGGA 58.936 36.000 12.23 2.78 45.12 3.41
5559 7163 6.718454 AGTTCATGAGTTTTCAGTTCATGGAT 59.282 34.615 12.23 0.00 45.12 3.41
5561 7165 7.528996 TCATGAGTTTTCAGTTCATGGATTT 57.471 32.000 12.23 0.00 45.12 2.17
5562 7166 8.634335 TCATGAGTTTTCAGTTCATGGATTTA 57.366 30.769 12.23 0.00 45.12 1.40
5563 7167 8.733458 TCATGAGTTTTCAGTTCATGGATTTAG 58.267 33.333 12.23 0.00 45.12 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.539518 GGAGACCCTCAAAGCTCCTC 59.460 60.000 0.00 0.00 42.81 3.71
91 92 5.767670 ACAGAGTTGAGGGCTAATCTAGTA 58.232 41.667 0.00 0.00 0.00 1.82
119 120 2.119495 TGAGAGGGGGCTAAATGAGTC 58.881 52.381 0.00 0.00 0.00 3.36
132 133 5.067023 GGAGCTTTAACATGATTTGAGAGGG 59.933 44.000 0.00 0.00 0.00 4.30
202 203 6.582437 AGCAAAACAAATAAACGAAAGGTG 57.418 33.333 0.00 0.00 0.00 4.00
203 204 6.256975 GGAAGCAAAACAAATAAACGAAAGGT 59.743 34.615 0.00 0.00 0.00 3.50
210 211 7.969314 TGTTTCTGGAAGCAAAACAAATAAAC 58.031 30.769 0.00 0.00 0.00 2.01
279 280 7.891498 ATGGTCCTTGTTTAGTGTACTTTTT 57.109 32.000 0.00 0.00 0.00 1.94
290 291 4.715534 TCCTGACAATGGTCCTTGTTTA 57.284 40.909 0.00 2.17 43.65 2.01
308 309 4.780815 TGTTGAACTGTTGTGAGATTCCT 58.219 39.130 0.00 0.00 0.00 3.36
358 465 5.940192 ACTTTCAAAATGTCTACGCATGA 57.060 34.783 0.00 0.00 0.00 3.07
411 518 5.105837 ACACCCATTCTAGAAAGTCGTCTAC 60.106 44.000 9.71 0.00 0.00 2.59
417 524 6.282199 TGACTACACCCATTCTAGAAAGTC 57.718 41.667 18.23 18.23 33.20 3.01
458 872 9.144085 GTTTTAAGCGTCGAATACTTATTGATG 57.856 33.333 0.00 0.00 0.00 3.07
701 1249 7.447374 TGTTTGGTTCGTTGATCTAATCATT 57.553 32.000 0.00 0.00 39.39 2.57
870 1418 1.908299 TGCTGGAGAAGAGACGGCA 60.908 57.895 0.00 0.00 43.61 5.69
950 1498 3.699894 AGTGGAGGCGCAGTGGAG 61.700 66.667 10.83 0.00 0.00 3.86
951 1499 4.007644 CAGTGGAGGCGCAGTGGA 62.008 66.667 10.83 0.00 0.00 4.02
1071 1619 3.071602 AGCAAGAGAGAACTAAACCTGCA 59.928 43.478 0.00 0.00 0.00 4.41
1088 1636 1.399791 GGAATCCAAAGCTCGAGCAAG 59.600 52.381 36.87 24.80 45.16 4.01
1122 1670 2.297701 CGTAAGCCCAAATGCATACCT 58.702 47.619 0.00 0.00 33.14 3.08
1167 1715 0.473755 TCAGCTCCAACTCCAAAGCA 59.526 50.000 0.00 0.00 37.22 3.91
1251 1799 5.579511 CCATTTCCTGCAAGCATAAGAAAAG 59.420 40.000 14.68 11.74 0.00 2.27
1256 1804 4.556104 CGATCCATTTCCTGCAAGCATAAG 60.556 45.833 0.00 0.00 0.00 1.73
1259 1807 1.679680 CGATCCATTTCCTGCAAGCAT 59.320 47.619 0.00 0.00 0.00 3.79
1507 2072 8.217131 ACAATAGTAATTCAATAAACCGGACC 57.783 34.615 9.46 0.00 0.00 4.46
1605 2264 3.056465 GCTACTACTGCAGAACTTCACCT 60.056 47.826 23.35 0.00 0.00 4.00
1634 2293 2.449137 TTAAGGGACGGAGGGAGTAG 57.551 55.000 0.00 0.00 0.00 2.57
1637 2296 5.331069 TCTTATATTAAGGGACGGAGGGAG 58.669 45.833 0.00 0.00 0.00 4.30
1638 2297 5.343833 TCTTATATTAAGGGACGGAGGGA 57.656 43.478 0.00 0.00 0.00 4.20
1639 2298 5.163540 CGATCTTATATTAAGGGACGGAGGG 60.164 48.000 0.00 0.00 0.00 4.30
1640 2299 5.418209 ACGATCTTATATTAAGGGACGGAGG 59.582 44.000 0.00 0.00 0.00 4.30
1641 2300 6.512342 ACGATCTTATATTAAGGGACGGAG 57.488 41.667 0.00 0.00 0.00 4.63
1643 2302 8.517878 TCTTTACGATCTTATATTAAGGGACGG 58.482 37.037 0.00 0.00 0.00 4.79
1668 2327 9.810870 ACTCCCTCCGTCCTATAATATAATATC 57.189 37.037 0.00 0.00 0.00 1.63
1671 2330 7.724951 GCTACTCCCTCCGTCCTATAATATAAT 59.275 40.741 0.00 0.00 0.00 1.28
1672 2331 7.059156 GCTACTCCCTCCGTCCTATAATATAA 58.941 42.308 0.00 0.00 0.00 0.98
1673 2332 6.159222 TGCTACTCCCTCCGTCCTATAATATA 59.841 42.308 0.00 0.00 0.00 0.86
1674 2333 5.044328 TGCTACTCCCTCCGTCCTATAATAT 60.044 44.000 0.00 0.00 0.00 1.28
1675 2334 4.290459 TGCTACTCCCTCCGTCCTATAATA 59.710 45.833 0.00 0.00 0.00 0.98
1676 2335 3.075582 TGCTACTCCCTCCGTCCTATAAT 59.924 47.826 0.00 0.00 0.00 1.28
1677 2336 2.444388 TGCTACTCCCTCCGTCCTATAA 59.556 50.000 0.00 0.00 0.00 0.98
1678 2337 2.060275 TGCTACTCCCTCCGTCCTATA 58.940 52.381 0.00 0.00 0.00 1.31
1679 2338 0.851469 TGCTACTCCCTCCGTCCTAT 59.149 55.000 0.00 0.00 0.00 2.57
1680 2339 0.851469 ATGCTACTCCCTCCGTCCTA 59.149 55.000 0.00 0.00 0.00 2.94
1681 2340 0.032017 AATGCTACTCCCTCCGTCCT 60.032 55.000 0.00 0.00 0.00 3.85
1682 2341 0.831307 AAATGCTACTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
1683 2342 3.321111 TCATAAATGCTACTCCCTCCGTC 59.679 47.826 0.00 0.00 0.00 4.79
1684 2343 3.305720 TCATAAATGCTACTCCCTCCGT 58.694 45.455 0.00 0.00 0.00 4.69
1685 2344 4.336889 TTCATAAATGCTACTCCCTCCG 57.663 45.455 0.00 0.00 0.00 4.63
1697 2356 3.131577 ACCACAGGCAGCATTCATAAATG 59.868 43.478 0.00 0.00 44.31 2.32
1698 2357 3.368248 ACCACAGGCAGCATTCATAAAT 58.632 40.909 0.00 0.00 0.00 1.40
1699 2358 2.806434 ACCACAGGCAGCATTCATAAA 58.194 42.857 0.00 0.00 0.00 1.40
1700 2359 2.512692 ACCACAGGCAGCATTCATAA 57.487 45.000 0.00 0.00 0.00 1.90
1709 2368 5.402398 GCTTTCTAAAATAACCACAGGCAG 58.598 41.667 0.00 0.00 0.00 4.85
1741 2400 3.351794 TGTCTGACTCTCCGTGACTAT 57.648 47.619 9.51 0.00 0.00 2.12
1755 2414 5.070446 ACTGAACAACCTAGTGAATGTCTGA 59.930 40.000 0.00 0.00 0.00 3.27
1756 2415 5.178252 CACTGAACAACCTAGTGAATGTCTG 59.822 44.000 0.00 0.00 43.35 3.51
1757 2416 5.070446 TCACTGAACAACCTAGTGAATGTCT 59.930 40.000 0.00 0.00 45.47 3.41
1758 2417 5.297547 TCACTGAACAACCTAGTGAATGTC 58.702 41.667 0.00 0.00 45.47 3.06
1759 2418 5.290493 TCACTGAACAACCTAGTGAATGT 57.710 39.130 0.00 0.00 45.47 2.71
1776 2474 5.998454 TGAGAAAGAAAAAGCTCTCACTG 57.002 39.130 0.00 0.00 39.43 3.66
1828 2526 7.072177 TGCAATACCGTATTTCTCTTTCAAG 57.928 36.000 0.73 0.00 0.00 3.02
1981 2679 9.063615 TGAAAGTCCAAGAAAAGGAATAGTTAC 57.936 33.333 0.00 0.00 36.80 2.50
2165 2863 0.252197 GTAAAGGGGATCGCTGTGGT 59.748 55.000 9.90 0.00 0.00 4.16
2196 2894 2.224523 GCGGATGTGGAGGGAATATTGA 60.225 50.000 0.00 0.00 0.00 2.57
2202 2900 1.209504 CTTAAGCGGATGTGGAGGGAA 59.790 52.381 0.00 0.00 0.00 3.97
2206 2904 5.470845 CTTAAACTTAAGCGGATGTGGAG 57.529 43.478 1.29 0.00 34.37 3.86
2486 3184 7.815641 ACGATTAAATTGTGATGTGACATCAA 58.184 30.769 27.88 15.34 0.00 2.57
2586 3284 3.473625 CATCATGCAGCTAGATGTGGAA 58.526 45.455 10.15 0.00 35.57 3.53
2724 3422 3.206150 CATTTATACAAGCGGCAGGACT 58.794 45.455 1.45 0.00 0.00 3.85
2725 3423 2.943033 ACATTTATACAAGCGGCAGGAC 59.057 45.455 1.45 0.00 0.00 3.85
2856 3556 4.437682 CCATGGCTCTGGTAAAAGGATA 57.562 45.455 0.00 0.00 0.00 2.59
2925 3625 9.871238 TCATGGTAAGAAACTAAGAATACACTC 57.129 33.333 0.00 0.00 0.00 3.51
2963 3663 3.568007 CGAACAGATTTGTGAAAAGGGGA 59.432 43.478 0.00 0.00 37.67 4.81
3080 3781 7.888021 TGAACAGGTATGGATAGTTCATTTGTT 59.112 33.333 0.00 0.00 42.35 2.83
3094 3795 1.741706 CTGCTTGCTGAACAGGTATGG 59.258 52.381 3.99 0.00 0.00 2.74
3119 3820 6.712547 GGAAACATAGGGATCCTTATCAGTTG 59.287 42.308 13.30 6.65 34.61 3.16
3218 3920 6.540189 CACACTCCTTTTTCTCTTTCTTCTCA 59.460 38.462 0.00 0.00 0.00 3.27
3249 3951 2.808244 CCAAGCGCTTTGACTTTGAAA 58.192 42.857 22.51 0.00 39.21 2.69
3387 4089 2.691011 GAGGCAGGAAACTCTCGAGTAT 59.309 50.000 13.13 0.00 41.58 2.12
3602 4667 1.819288 TGGTCCTGAATCACGTCTCTC 59.181 52.381 0.00 0.00 0.00 3.20
3604 4669 2.544685 CATGGTCCTGAATCACGTCTC 58.455 52.381 0.00 0.00 0.00 3.36
3605 4670 1.208052 CCATGGTCCTGAATCACGTCT 59.792 52.381 2.57 0.00 0.00 4.18
3606 4671 1.066143 ACCATGGTCCTGAATCACGTC 60.066 52.381 13.00 0.00 0.00 4.34
3608 4673 2.009774 GAACCATGGTCCTGAATCACG 58.990 52.381 20.07 0.00 0.00 4.35
3609 4674 3.012518 CTGAACCATGGTCCTGAATCAC 58.987 50.000 20.07 2.45 0.00 3.06
3610 4675 2.618816 GCTGAACCATGGTCCTGAATCA 60.619 50.000 20.07 15.74 0.00 2.57
3611 4676 2.019984 GCTGAACCATGGTCCTGAATC 58.980 52.381 20.07 11.54 0.00 2.52
3612 4677 1.341383 GGCTGAACCATGGTCCTGAAT 60.341 52.381 20.07 0.00 38.86 2.57
3613 4678 0.038166 GGCTGAACCATGGTCCTGAA 59.962 55.000 20.07 1.26 38.86 3.02
3614 4679 1.685224 GGCTGAACCATGGTCCTGA 59.315 57.895 20.07 0.00 38.86 3.86
3616 4681 1.488705 TTCGGCTGAACCATGGTCCT 61.489 55.000 20.07 2.47 39.03 3.85
3617 4682 1.002624 TTCGGCTGAACCATGGTCC 60.003 57.895 20.07 14.14 39.03 4.46
3618 4683 4.713946 TTCGGCTGAACCATGGTC 57.286 55.556 20.07 12.36 39.03 4.02
3626 4691 1.568504 AGACCATAGGTTCGGCTGAA 58.431 50.000 3.13 3.13 35.25 3.02
3627 4692 2.447408 TAGACCATAGGTTCGGCTGA 57.553 50.000 0.00 0.00 35.25 4.26
3628 4693 2.868044 GCATAGACCATAGGTTCGGCTG 60.868 54.545 0.00 0.00 35.25 4.85
3630 4695 1.608283 GGCATAGACCATAGGTTCGGC 60.608 57.143 0.00 0.00 35.25 5.54
3631 4696 1.336887 CGGCATAGACCATAGGTTCGG 60.337 57.143 0.00 0.00 35.25 4.30
3632 4697 1.340248 ACGGCATAGACCATAGGTTCG 59.660 52.381 0.00 0.00 35.25 3.95
3635 4700 1.884579 CGTACGGCATAGACCATAGGT 59.115 52.381 7.57 0.00 39.44 3.08
3636 4701 2.156917 TCGTACGGCATAGACCATAGG 58.843 52.381 16.52 0.00 0.00 2.57
3637 4702 4.436242 AATCGTACGGCATAGACCATAG 57.564 45.455 16.52 0.00 0.00 2.23
3639 4704 3.746045 AAATCGTACGGCATAGACCAT 57.254 42.857 16.52 0.00 0.00 3.55
3640 4705 4.142204 TGTTAAATCGTACGGCATAGACCA 60.142 41.667 16.52 0.68 0.00 4.02
3641 4706 4.362279 TGTTAAATCGTACGGCATAGACC 58.638 43.478 16.52 0.00 0.00 3.85
3642 4707 5.118203 GGATGTTAAATCGTACGGCATAGAC 59.882 44.000 16.52 8.30 0.00 2.59
3643 4708 5.010314 AGGATGTTAAATCGTACGGCATAGA 59.990 40.000 16.52 0.00 0.00 1.98
3644 4709 5.227908 AGGATGTTAAATCGTACGGCATAG 58.772 41.667 16.52 0.00 0.00 2.23
3645 4710 5.204409 AGGATGTTAAATCGTACGGCATA 57.796 39.130 16.52 3.15 0.00 3.14
3646 4711 4.067972 AGGATGTTAAATCGTACGGCAT 57.932 40.909 16.52 10.10 0.00 4.40
3647 4712 3.530265 AGGATGTTAAATCGTACGGCA 57.470 42.857 16.52 0.00 0.00 5.69
3648 4713 4.614946 AGTAGGATGTTAAATCGTACGGC 58.385 43.478 16.52 0.16 41.55 5.68
3649 4714 6.728200 TGTAGTAGGATGTTAAATCGTACGG 58.272 40.000 16.52 0.00 41.55 4.02
3650 4715 7.859377 ACATGTAGTAGGATGTTAAATCGTACG 59.141 37.037 9.53 9.53 41.55 3.67
3651 4716 8.965172 CACATGTAGTAGGATGTTAAATCGTAC 58.035 37.037 0.00 7.04 38.78 3.67
3652 4717 8.139350 CCACATGTAGTAGGATGTTAAATCGTA 58.861 37.037 0.00 0.00 30.14 3.43
3653 4718 6.984474 CCACATGTAGTAGGATGTTAAATCGT 59.016 38.462 0.00 0.00 30.14 3.73
3654 4719 6.423905 CCCACATGTAGTAGGATGTTAAATCG 59.576 42.308 0.00 0.00 29.41 3.34
3655 4720 7.280356 ACCCACATGTAGTAGGATGTTAAATC 58.720 38.462 0.00 0.00 32.78 2.17
3656 4721 7.127339 AGACCCACATGTAGTAGGATGTTAAAT 59.873 37.037 0.00 0.00 32.78 1.40
3657 4722 6.442564 AGACCCACATGTAGTAGGATGTTAAA 59.557 38.462 0.00 0.00 32.78 1.52
3658 4723 5.962031 AGACCCACATGTAGTAGGATGTTAA 59.038 40.000 0.00 0.00 32.78 2.01
3659 4724 5.362717 CAGACCCACATGTAGTAGGATGTTA 59.637 44.000 0.00 0.00 32.78 2.41
3660 4725 4.162320 CAGACCCACATGTAGTAGGATGTT 59.838 45.833 0.00 0.00 32.78 2.71
3661 4726 3.706594 CAGACCCACATGTAGTAGGATGT 59.293 47.826 0.00 0.00 32.78 3.06
3662 4727 3.706594 ACAGACCCACATGTAGTAGGATG 59.293 47.826 0.00 5.21 32.78 3.51
3663 4728 3.706594 CACAGACCCACATGTAGTAGGAT 59.293 47.826 0.00 0.00 32.78 3.24
3664 4729 3.096852 CACAGACCCACATGTAGTAGGA 58.903 50.000 0.00 0.00 32.78 2.94
3665 4730 3.096852 TCACAGACCCACATGTAGTAGG 58.903 50.000 0.00 0.00 34.87 3.18
3666 4731 3.509967 TGTCACAGACCCACATGTAGTAG 59.490 47.826 0.00 0.00 0.00 2.57
3667 4732 3.502356 TGTCACAGACCCACATGTAGTA 58.498 45.455 0.00 0.00 0.00 1.82
3668 4733 2.325484 TGTCACAGACCCACATGTAGT 58.675 47.619 0.00 0.00 0.00 2.73
3669 4734 3.264947 CATGTCACAGACCCACATGTAG 58.735 50.000 0.00 0.00 41.64 2.74
3670 4735 2.615240 GCATGTCACAGACCCACATGTA 60.615 50.000 0.00 0.00 46.17 2.29
3671 4736 1.883638 GCATGTCACAGACCCACATGT 60.884 52.381 11.75 0.00 46.17 3.21
3672 4737 0.806868 GCATGTCACAGACCCACATG 59.193 55.000 6.87 6.87 46.86 3.21
3673 4738 0.401356 TGCATGTCACAGACCCACAT 59.599 50.000 0.00 0.00 0.00 3.21
3674 4739 0.401356 ATGCATGTCACAGACCCACA 59.599 50.000 0.00 0.00 0.00 4.17
3675 4740 0.806868 CATGCATGTCACAGACCCAC 59.193 55.000 18.91 0.00 0.00 4.61
3676 4741 0.961857 GCATGCATGTCACAGACCCA 60.962 55.000 26.79 0.00 0.00 4.51
3677 4742 1.660560 GGCATGCATGTCACAGACCC 61.661 60.000 26.04 12.69 31.41 4.46
3678 4743 0.961857 TGGCATGCATGTCACAGACC 60.962 55.000 29.45 18.47 37.51 3.85
3679 4744 0.883153 TTGGCATGCATGTCACAGAC 59.117 50.000 32.61 11.36 42.90 3.51
3680 4745 0.883153 GTTGGCATGCATGTCACAGA 59.117 50.000 32.61 16.64 42.90 3.41
3681 4746 0.885879 AGTTGGCATGCATGTCACAG 59.114 50.000 32.61 4.10 42.90 3.66
3682 4747 0.599060 CAGTTGGCATGCATGTCACA 59.401 50.000 32.61 22.14 42.90 3.58
3683 4748 0.734942 GCAGTTGGCATGCATGTCAC 60.735 55.000 32.61 25.01 42.90 3.67
3684 4749 1.587568 GCAGTTGGCATGCATGTCA 59.412 52.632 29.45 29.45 43.31 3.58
3685 4750 4.489249 GCAGTTGGCATGCATGTC 57.511 55.556 24.40 24.40 43.31 3.06
3717 4782 5.354513 GTCTATTCATGAGGATCCATGCATG 59.645 44.000 24.86 24.86 42.63 4.06
3718 4783 5.013808 TGTCTATTCATGAGGATCCATGCAT 59.986 40.000 15.82 11.45 42.63 3.96
3719 4784 4.348754 TGTCTATTCATGAGGATCCATGCA 59.651 41.667 15.82 9.47 42.63 3.96
3720 4785 4.903054 TGTCTATTCATGAGGATCCATGC 58.097 43.478 15.82 3.29 42.63 4.06
3721 4786 5.354513 GCATGTCTATTCATGAGGATCCATG 59.645 44.000 15.82 10.15 45.41 3.66
3722 4787 5.013808 TGCATGTCTATTCATGAGGATCCAT 59.986 40.000 15.82 0.00 45.41 3.41
3723 4788 4.348754 TGCATGTCTATTCATGAGGATCCA 59.651 41.667 15.82 0.00 45.41 3.41
3724 4789 4.903054 TGCATGTCTATTCATGAGGATCC 58.097 43.478 2.48 2.48 45.41 3.36
3725 4790 5.938710 ACATGCATGTCTATTCATGAGGATC 59.061 40.000 26.61 0.00 45.41 3.36
3726 4791 5.877491 ACATGCATGTCTATTCATGAGGAT 58.123 37.500 26.61 0.00 45.41 3.24
3727 4792 5.300411 ACATGCATGTCTATTCATGAGGA 57.700 39.130 26.61 0.00 45.41 3.71
3764 4829 9.072460 TCCATTAGGATCCATATATGGTTGATT 57.928 33.333 27.36 14.76 43.23 2.57
3765 4830 8.642964 TCCATTAGGATCCATATATGGTTGAT 57.357 34.615 27.36 16.11 43.23 2.57
3781 4846 6.785337 TTGATTTCTAGACGTCCATTAGGA 57.215 37.500 13.01 0.00 43.21 2.94
3782 4847 6.425114 CCATTGATTTCTAGACGTCCATTAGG 59.575 42.308 13.01 0.40 0.00 2.69
3783 4848 6.986817 ACCATTGATTTCTAGACGTCCATTAG 59.013 38.462 13.01 7.96 0.00 1.73
3784 4849 6.761242 CACCATTGATTTCTAGACGTCCATTA 59.239 38.462 13.01 0.00 0.00 1.90
3785 4850 5.586243 CACCATTGATTTCTAGACGTCCATT 59.414 40.000 13.01 0.00 0.00 3.16
3786 4851 5.118990 CACCATTGATTTCTAGACGTCCAT 58.881 41.667 13.01 0.00 0.00 3.41
3787 4852 4.020573 ACACCATTGATTTCTAGACGTCCA 60.021 41.667 13.01 0.00 0.00 4.02
3788 4853 4.504858 ACACCATTGATTTCTAGACGTCC 58.495 43.478 13.01 0.00 0.00 4.79
3789 4854 4.265556 CGACACCATTGATTTCTAGACGTC 59.734 45.833 7.70 7.70 0.00 4.34
3790 4855 4.082408 TCGACACCATTGATTTCTAGACGT 60.082 41.667 0.00 0.00 0.00 4.34
3791 4856 4.421058 TCGACACCATTGATTTCTAGACG 58.579 43.478 0.00 0.00 0.00 4.18
3792 4857 4.268884 GCTCGACACCATTGATTTCTAGAC 59.731 45.833 0.00 0.00 0.00 2.59
3793 4858 4.433615 GCTCGACACCATTGATTTCTAGA 58.566 43.478 0.00 0.00 0.00 2.43
3794 4859 3.243877 CGCTCGACACCATTGATTTCTAG 59.756 47.826 0.00 0.00 0.00 2.43
3795 4860 3.186909 CGCTCGACACCATTGATTTCTA 58.813 45.455 0.00 0.00 0.00 2.10
3796 4861 2.002586 CGCTCGACACCATTGATTTCT 58.997 47.619 0.00 0.00 0.00 2.52
3797 4862 1.732259 ACGCTCGACACCATTGATTTC 59.268 47.619 0.00 0.00 0.00 2.17
3798 4863 1.808411 ACGCTCGACACCATTGATTT 58.192 45.000 0.00 0.00 0.00 2.17
3799 4864 2.540515 CTACGCTCGACACCATTGATT 58.459 47.619 0.00 0.00 0.00 2.57
3800 4865 1.202417 CCTACGCTCGACACCATTGAT 60.202 52.381 0.00 0.00 0.00 2.57
3801 4866 0.172578 CCTACGCTCGACACCATTGA 59.827 55.000 0.00 0.00 0.00 2.57
3802 4867 0.108804 ACCTACGCTCGACACCATTG 60.109 55.000 0.00 0.00 0.00 2.82
3803 4868 0.606604 AACCTACGCTCGACACCATT 59.393 50.000 0.00 0.00 0.00 3.16
3804 4869 0.172803 GAACCTACGCTCGACACCAT 59.827 55.000 0.00 0.00 0.00 3.55
3805 4870 1.582968 GAACCTACGCTCGACACCA 59.417 57.895 0.00 0.00 0.00 4.17
3806 4871 1.513586 CGAACCTACGCTCGACACC 60.514 63.158 0.00 0.00 37.23 4.16
3807 4872 1.513586 CCGAACCTACGCTCGACAC 60.514 63.158 0.00 0.00 37.23 3.67
3808 4873 2.872557 CCGAACCTACGCTCGACA 59.127 61.111 0.00 0.00 37.23 4.35
3809 4874 2.578981 GCCGAACCTACGCTCGAC 60.579 66.667 0.00 0.00 37.23 4.20
3810 4875 2.749044 AGCCGAACCTACGCTCGA 60.749 61.111 0.00 0.00 37.23 4.04
3811 4876 2.537792 TTCAGCCGAACCTACGCTCG 62.538 60.000 0.00 0.00 34.83 5.03
3812 4877 1.077089 GTTCAGCCGAACCTACGCTC 61.077 60.000 1.04 0.00 44.92 5.03
3813 4878 1.080025 GTTCAGCCGAACCTACGCT 60.080 57.895 1.04 0.00 44.92 5.07
3814 4879 3.471399 GTTCAGCCGAACCTACGC 58.529 61.111 1.04 0.00 44.92 4.42
3829 4894 6.699642 CGAAAATGTTTTACAGAACCATGGTT 59.300 34.615 30.23 30.23 41.54 3.67
3830 4895 6.212955 CGAAAATGTTTTACAGAACCATGGT 58.787 36.000 13.00 13.00 0.00 3.55
3831 4896 5.118510 GCGAAAATGTTTTACAGAACCATGG 59.881 40.000 11.19 11.19 0.00 3.66
3832 4897 5.689514 TGCGAAAATGTTTTACAGAACCATG 59.310 36.000 0.00 0.00 0.00 3.66
3833 4898 5.837437 TGCGAAAATGTTTTACAGAACCAT 58.163 33.333 0.00 0.00 0.00 3.55
3834 4899 5.250235 TGCGAAAATGTTTTACAGAACCA 57.750 34.783 0.00 0.00 0.00 3.67
3835 4900 7.593644 ACTTATGCGAAAATGTTTTACAGAACC 59.406 33.333 0.00 0.00 0.00 3.62
3836 4901 8.502161 ACTTATGCGAAAATGTTTTACAGAAC 57.498 30.769 0.00 0.00 0.00 3.01
3837 4902 8.963130 CAACTTATGCGAAAATGTTTTACAGAA 58.037 29.630 0.00 0.00 0.00 3.02
3838 4903 8.132362 ACAACTTATGCGAAAATGTTTTACAGA 58.868 29.630 0.00 0.00 0.00 3.41
3839 4904 8.280909 ACAACTTATGCGAAAATGTTTTACAG 57.719 30.769 0.00 0.00 0.00 2.74
3840 4905 9.900710 ATACAACTTATGCGAAAATGTTTTACA 57.099 25.926 0.00 0.00 0.00 2.41
3882 4947 8.251721 ACAGTACTAATAGGAACAAACTAGCTG 58.748 37.037 0.00 0.00 0.00 4.24
3902 4967 7.646314 TGACTGACAGTTAAGAAGTACAGTAC 58.354 38.462 10.01 2.05 37.45 2.73
3903 4968 7.812690 TGACTGACAGTTAAGAAGTACAGTA 57.187 36.000 10.01 0.00 37.45 2.74
3904 4969 6.710597 TGACTGACAGTTAAGAAGTACAGT 57.289 37.500 10.01 0.00 39.50 3.55
3959 5032 4.000331 ACATGGATTGACGAGGATGATC 58.000 45.455 0.00 0.00 0.00 2.92
3960 5033 4.132336 CAACATGGATTGACGAGGATGAT 58.868 43.478 0.00 0.00 0.00 2.45
4642 5968 1.751924 CACTCTCTACCTGGCTACCAC 59.248 57.143 0.00 0.00 0.00 4.16
4649 5975 4.608948 ACTTCAAACACTCTCTACCTGG 57.391 45.455 0.00 0.00 0.00 4.45
4689 6015 1.451936 GAGCACCCACAACTGACCT 59.548 57.895 0.00 0.00 0.00 3.85
4690 6016 1.600916 GGAGCACCCACAACTGACC 60.601 63.158 0.00 0.00 34.14 4.02
4708 6034 1.275291 TCCCTCTTCTTTACAGGCACG 59.725 52.381 0.00 0.00 0.00 5.34
4711 6037 1.557371 AGCTCCCTCTTCTTTACAGGC 59.443 52.381 0.00 0.00 0.00 4.85
4756 6116 4.095334 GGAAATTGGCCTCATGAATTTTGC 59.905 41.667 3.32 0.00 31.10 3.68
4761 6121 2.433239 GCTGGAAATTGGCCTCATGAAT 59.567 45.455 3.32 0.00 0.00 2.57
4768 6128 1.551883 GTTCATGCTGGAAATTGGCCT 59.448 47.619 3.32 0.00 0.00 5.19
4769 6129 1.405933 GGTTCATGCTGGAAATTGGCC 60.406 52.381 0.00 0.00 0.00 5.36
4770 6130 1.275856 TGGTTCATGCTGGAAATTGGC 59.724 47.619 0.00 0.00 0.00 4.52
4779 6141 1.887854 TGGACAACATGGTTCATGCTG 59.112 47.619 7.70 8.42 44.80 4.41
4801 6163 3.855255 AAATGTTCCCTTTGTTTGGGG 57.145 42.857 0.00 0.00 44.67 4.96
4824 6255 8.511321 ACGATTAGCATTGAGTGTTCATAAAAA 58.489 29.630 0.00 0.00 32.27 1.94
4825 6256 8.039603 ACGATTAGCATTGAGTGTTCATAAAA 57.960 30.769 0.00 0.00 32.27 1.52
4830 6300 4.868171 GGTACGATTAGCATTGAGTGTTCA 59.132 41.667 0.00 0.00 0.00 3.18
4835 6305 6.374333 ACAAATTGGTACGATTAGCATTGAGT 59.626 34.615 0.00 0.00 35.64 3.41
4843 6313 6.481976 TCCATGCTACAAATTGGTACGATTAG 59.518 38.462 0.00 0.00 0.00 1.73
4844 6314 6.259167 GTCCATGCTACAAATTGGTACGATTA 59.741 38.462 0.00 0.00 0.00 1.75
4848 6318 3.938963 AGTCCATGCTACAAATTGGTACG 59.061 43.478 0.00 0.00 0.00 3.67
4860 6339 1.350684 TGTTGCCTTCAGTCCATGCTA 59.649 47.619 0.00 0.00 0.00 3.49
4867 6346 5.243426 TGTTTAAACTGTTGCCTTCAGTC 57.757 39.130 18.72 0.00 44.03 3.51
4869 6348 6.018832 CCAAATGTTTAAACTGTTGCCTTCAG 60.019 38.462 18.72 6.07 38.68 3.02
4870 6349 5.814705 CCAAATGTTTAAACTGTTGCCTTCA 59.185 36.000 18.72 0.00 0.00 3.02
4871 6350 5.236263 CCCAAATGTTTAAACTGTTGCCTTC 59.764 40.000 18.72 0.00 0.00 3.46
4873 6352 4.407296 TCCCAAATGTTTAAACTGTTGCCT 59.593 37.500 18.72 0.00 0.00 4.75
4874 6353 4.698575 TCCCAAATGTTTAAACTGTTGCC 58.301 39.130 18.72 0.00 0.00 4.52
4955 6439 4.329545 GGGCTCGCCACACCAAGA 62.330 66.667 10.51 0.00 37.98 3.02
5034 6520 1.821753 TCTCTGGACTAGCAGTTGAGC 59.178 52.381 0.00 0.00 0.00 4.26
5038 6524 2.099405 GAGCTCTCTGGACTAGCAGTT 58.901 52.381 6.43 0.00 38.75 3.16
5040 6526 2.057137 AGAGCTCTCTGGACTAGCAG 57.943 55.000 11.45 0.00 38.75 4.24
5058 6544 2.171003 CCACCTGGGCCTCTTTAAAAG 58.829 52.381 4.53 0.00 0.00 2.27
5310 6896 8.766000 AACGTCAACTGTAATATGTGAACATA 57.234 30.769 5.65 5.65 42.38 2.29
5432 7036 9.447157 TGAACTTTTTCCAAATTTGATGAACTT 57.553 25.926 19.86 2.69 0.00 2.66
5433 7037 9.617523 ATGAACTTTTTCCAAATTTGATGAACT 57.382 25.926 19.86 0.00 0.00 3.01
5434 7038 9.868389 GATGAACTTTTTCCAAATTTGATGAAC 57.132 29.630 19.86 3.70 0.00 3.18
5435 7039 9.835389 AGATGAACTTTTTCCAAATTTGATGAA 57.165 25.926 19.86 12.06 0.00 2.57
5514 7118 7.257722 TGAACTTTTTCTCAAACTGATGAACC 58.742 34.615 0.00 0.00 32.36 3.62
5523 7127 9.139174 TGAAAACTCATGAACTTTTTCTCAAAC 57.861 29.630 23.83 9.29 38.32 2.93
5529 7133 8.687824 TGAACTGAAAACTCATGAACTTTTTC 57.312 30.769 20.16 20.16 38.09 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.