Multiple sequence alignment - TraesCS4B01G192100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G192100 chr4B 100.000 8142 0 0 1 8142 414858380 414866521 0.000000e+00 15036.0
1 TraesCS4B01G192100 chr4D 96.041 5708 162 27 2468 8142 336659203 336664879 0.000000e+00 9230.0
2 TraesCS4B01G192100 chr4D 95.763 1652 57 7 495 2145 336657381 336659020 0.000000e+00 2651.0
3 TraesCS4B01G192100 chr4D 92.010 388 23 5 105 492 336656679 336657058 9.300000e-149 538.0
4 TraesCS4B01G192100 chr4D 81.694 366 44 19 1325 1685 145529178 145528831 4.810000e-72 283.0
5 TraesCS4B01G192100 chr4D 81.766 351 44 16 1325 1672 145494151 145493818 8.050000e-70 276.0
6 TraesCS4B01G192100 chr4D 90.816 196 8 4 2180 2368 336659017 336659209 3.770000e-63 254.0
7 TraesCS4B01G192100 chr4D 97.196 107 3 0 2367 2473 67466428 67466322 1.810000e-41 182.0
8 TraesCS4B01G192100 chr4A 95.956 5317 135 30 2468 7735 136758515 136753230 0.000000e+00 8554.0
9 TraesCS4B01G192100 chr4A 94.858 1653 61 10 495 2145 136760328 136758698 0.000000e+00 2560.0
10 TraesCS4B01G192100 chr4A 90.226 399 31 5 97 495 136761308 136760918 1.570000e-141 514.0
11 TraesCS4B01G192100 chr4A 85.507 414 43 7 7720 8131 136752986 136752588 4.550000e-112 416.0
12 TraesCS4B01G192100 chr4A 89.796 196 10 8 2180 2368 136758701 136758509 8.160000e-60 243.0
13 TraesCS4B01G192100 chr4A 97.196 107 3 0 2367 2473 516936323 516936217 1.810000e-41 182.0
14 TraesCS4B01G192100 chr1A 90.768 1484 84 18 4654 6121 35507257 35508703 0.000000e+00 1932.0
15 TraesCS4B01G192100 chr1A 96.424 783 27 1 4449 5231 35532925 35533706 0.000000e+00 1290.0
16 TraesCS4B01G192100 chr1A 89.003 873 64 18 6127 6993 35512809 35513655 0.000000e+00 1051.0
17 TraesCS4B01G192100 chr1A 90.305 361 30 5 6636 6993 35483745 35484103 1.240000e-127 468.0
18 TraesCS4B01G192100 chr1A 85.519 366 42 8 6275 6634 35438751 35439111 9.980000e-99 372.0
19 TraesCS4B01G192100 chr1A 98.068 207 4 0 4449 4655 35500635 35500841 2.160000e-95 361.0
20 TraesCS4B01G192100 chr1A 81.538 390 41 23 7036 7418 35484105 35484470 7.990000e-75 292.0
21 TraesCS4B01G192100 chr1A 83.237 346 27 21 7036 7379 35513657 35513973 1.030000e-73 289.0
22 TraesCS4B01G192100 chr1A 92.500 160 9 1 7054 7213 35534560 35534716 8.220000e-55 226.0
23 TraesCS4B01G192100 chr1A 88.976 127 9 4 7253 7379 35534721 35534842 1.420000e-32 152.0
24 TraesCS4B01G192100 chr1A 97.403 77 2 0 6613 6689 35534358 35534434 1.840000e-26 132.0
25 TraesCS4B01G192100 chr1A 82.258 62 11 0 7778 7839 415642769 415642830 4.000000e-03 54.7
26 TraesCS4B01G192100 chr1A 96.875 32 1 0 58 89 583258371 583258402 4.000000e-03 54.7
27 TraesCS4B01G192100 chr1B 90.833 1440 92 18 4652 6086 55971373 55972777 0.000000e+00 1892.0
28 TraesCS4B01G192100 chr1B 92.149 1312 89 11 4796 6100 55953601 55954905 0.000000e+00 1840.0
29 TraesCS4B01G192100 chr1B 91.851 1313 92 11 4796 6100 55942347 55943652 0.000000e+00 1818.0
30 TraesCS4B01G192100 chr1B 91.923 1201 61 17 4637 5833 56014322 56015490 0.000000e+00 1648.0
31 TraesCS4B01G192100 chr1B 90.754 1114 77 11 4978 6086 55993410 55994502 0.000000e+00 1463.0
32 TraesCS4B01G192100 chr1B 94.142 239 8 2 4637 4875 55971151 55971383 7.770000e-95 359.0
33 TraesCS4B01G192100 chr1B 94.093 237 8 2 4637 4873 55993149 55993379 1.010000e-93 355.0
34 TraesCS4B01G192100 chr1B 97.283 184 5 0 4449 4632 56014094 56014277 6.140000e-81 313.0
35 TraesCS4B01G192100 chr1B 96.739 184 6 0 4449 4632 55970923 55971106 2.850000e-79 307.0
36 TraesCS4B01G192100 chr1B 96.739 184 6 0 4449 4632 55992921 55993104 2.850000e-79 307.0
37 TraesCS4B01G192100 chr1B 88.125 160 17 1 6103 6260 56015889 56016048 1.080000e-43 189.0
38 TraesCS4B01G192100 chr1B 87.975 158 19 0 6103 6260 55943739 55943896 3.880000e-43 187.0
39 TraesCS4B01G192100 chr1B 87.975 158 19 0 6103 6260 55954992 55955149 3.880000e-43 187.0
40 TraesCS4B01G192100 chr1B 95.652 46 2 0 7169 7214 55976292 55976337 3.150000e-09 75.0
41 TraesCS4B01G192100 chr1B 93.478 46 3 0 7169 7214 56016046 56016091 1.470000e-07 69.4
42 TraesCS4B01G192100 chr1D 93.750 1248 56 10 4449 5689 36312649 36313881 0.000000e+00 1853.0
43 TraesCS4B01G192100 chr1D 92.593 162 11 1 7054 7215 36314338 36314498 1.770000e-56 231.0
44 TraesCS4B01G192100 chr1D 88.976 127 9 4 7253 7379 36314501 36314622 1.420000e-32 152.0
45 TraesCS4B01G192100 chr1D 96.104 77 2 1 6613 6689 36314134 36314209 3.090000e-24 124.0
46 TraesCS4B01G192100 chr2B 81.844 1779 297 23 3532 5299 64995724 64993961 0.000000e+00 1472.0
47 TraesCS4B01G192100 chr2B 82.166 157 26 2 1111 1266 64997042 64996887 5.130000e-27 134.0
48 TraesCS4B01G192100 chr2D 81.808 1781 294 26 3532 5299 37259302 37257539 0.000000e+00 1467.0
49 TraesCS4B01G192100 chr2D 82.517 143 23 2 1125 1266 37260911 37260770 3.090000e-24 124.0
50 TraesCS4B01G192100 chr2A 81.818 1782 291 27 3532 5299 42160234 42158472 0.000000e+00 1465.0
51 TraesCS4B01G192100 chr2A 82.550 149 23 3 1119 1266 42161807 42161661 2.390000e-25 128.0
52 TraesCS4B01G192100 chrUn 90.754 1114 77 11 4978 6086 319316023 319317115 0.000000e+00 1463.0
53 TraesCS4B01G192100 chrUn 83.376 788 63 37 1185 1948 178689254 178688511 0.000000e+00 667.0
54 TraesCS4B01G192100 chrUn 87.975 158 19 0 6103 6260 480727093 480726936 3.880000e-43 187.0
55 TraesCS4B01G192100 chr5A 82.275 378 43 14 1325 1700 268024658 268024303 1.030000e-78 305.0
56 TraesCS4B01G192100 chr5A 94.783 115 5 1 2366 2480 308093231 308093344 2.340000e-40 178.0
57 TraesCS4B01G192100 chr5A 94.783 115 5 1 2366 2480 308179775 308179888 2.340000e-40 178.0
58 TraesCS4B01G192100 chr3A 98.165 109 2 0 2366 2474 477332041 477332149 3.000000e-44 191.0
59 TraesCS4B01G192100 chr7B 97.196 107 3 0 2367 2473 683101573 683101467 1.810000e-41 182.0
60 TraesCS4B01G192100 chr6B 97.196 107 3 0 2367 2473 640973235 640973341 1.810000e-41 182.0
61 TraesCS4B01G192100 chr6D 96.296 108 4 0 2367 2474 439917140 439917033 2.340000e-40 178.0
62 TraesCS4B01G192100 chr6D 86.420 81 10 1 10 89 89296793 89296873 4.050000e-13 87.9
63 TraesCS4B01G192100 chr6A 95.495 111 4 1 2363 2473 170017876 170017767 8.400000e-40 176.0
64 TraesCS4B01G192100 chr3B 86.842 76 9 1 1 75 161457037 161457112 5.240000e-12 84.2
65 TraesCS4B01G192100 chr5B 87.692 65 8 0 31 95 251900897 251900833 8.760000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G192100 chr4B 414858380 414866521 8141 False 15036.000000 15036 100.00000 1 8142 1 chr4B.!!$F1 8141
1 TraesCS4B01G192100 chr4D 336656679 336664879 8200 False 3168.250000 9230 93.65750 105 8142 4 chr4D.!!$F1 8037
2 TraesCS4B01G192100 chr4A 136752588 136761308 8720 True 2457.400000 8554 91.26860 97 8131 5 chr4A.!!$R2 8034
3 TraesCS4B01G192100 chr1A 35507257 35508703 1446 False 1932.000000 1932 90.76800 4654 6121 1 chr1A.!!$F3 1467
4 TraesCS4B01G192100 chr1A 35512809 35513973 1164 False 670.000000 1051 86.12000 6127 7379 2 chr1A.!!$F7 1252
5 TraesCS4B01G192100 chr1A 35532925 35534842 1917 False 450.000000 1290 93.82575 4449 7379 4 chr1A.!!$F8 2930
6 TraesCS4B01G192100 chr1A 35483745 35484470 725 False 380.000000 468 85.92150 6636 7418 2 chr1A.!!$F6 782
7 TraesCS4B01G192100 chr1B 55953601 55955149 1548 False 1013.500000 1840 90.06200 4796 6260 2 chr1B.!!$F2 1464
8 TraesCS4B01G192100 chr1B 55942347 55943896 1549 False 1002.500000 1818 89.91300 4796 6260 2 chr1B.!!$F1 1464
9 TraesCS4B01G192100 chr1B 55992921 55994502 1581 False 708.333333 1463 93.86200 4449 6086 3 chr1B.!!$F4 1637
10 TraesCS4B01G192100 chr1B 55970923 55976337 5414 False 658.250000 1892 94.34150 4449 7214 4 chr1B.!!$F3 2765
11 TraesCS4B01G192100 chr1B 56014094 56016091 1997 False 554.850000 1648 92.70225 4449 7214 4 chr1B.!!$F5 2765
12 TraesCS4B01G192100 chr1D 36312649 36314622 1973 False 590.000000 1853 92.85575 4449 7379 4 chr1D.!!$F1 2930
13 TraesCS4B01G192100 chr2B 64993961 64997042 3081 True 803.000000 1472 82.00500 1111 5299 2 chr2B.!!$R1 4188
14 TraesCS4B01G192100 chr2D 37257539 37260911 3372 True 795.500000 1467 82.16250 1125 5299 2 chr2D.!!$R1 4174
15 TraesCS4B01G192100 chr2A 42158472 42161807 3335 True 796.500000 1465 82.18400 1119 5299 2 chr2A.!!$R1 4180
16 TraesCS4B01G192100 chrUn 319316023 319317115 1092 False 1463.000000 1463 90.75400 4978 6086 1 chrUn.!!$F1 1108
17 TraesCS4B01G192100 chrUn 178688511 178689254 743 True 667.000000 667 83.37600 1185 1948 1 chrUn.!!$R1 763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.029300 CTCCCGTTGCAACACACAAG 59.971 55.000 28.01 13.70 0.00 3.16 F
285 286 0.175073 GTATATCGCATCGGGGTCCC 59.825 60.000 0.00 0.00 0.00 4.46 F
2123 2922 0.041238 AACCTGAGATGTCCGAGGGA 59.959 55.000 1.86 0.00 0.00 4.20 F
2162 2961 0.033920 CCGAGCTATGGTATGCAGCA 59.966 55.000 0.00 0.00 37.78 4.41 F
2167 2966 0.106708 CTATGGTATGCAGCACCGGT 59.893 55.000 0.00 0.00 39.04 5.28 F
2173 2972 0.107897 TATGCAGCACCGGTAACAGG 60.108 55.000 6.87 0.00 36.50 4.00 F
2177 2976 0.250124 CAGCACCGGTAACAGGACAA 60.250 55.000 6.87 0.00 34.83 3.18 F
2178 2977 0.470766 AGCACCGGTAACAGGACAAA 59.529 50.000 6.87 0.00 34.83 2.83 F
2179 2978 1.134037 AGCACCGGTAACAGGACAAAA 60.134 47.619 6.87 0.00 34.83 2.44 F
2409 3275 1.202580 AGACGTTTCAGACAGCTTGCT 60.203 47.619 0.00 0.00 0.00 3.91 F
5506 6713 1.350193 ATCGTGTGAAGCAGCTAACG 58.650 50.000 0.00 4.42 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1960 0.531090 AGAACGCAACAGTAACGCCA 60.531 50.000 0.00 0.00 0.00 5.69 R
2148 2947 0.106708 ACCGGTGCTGCATACCATAG 59.893 55.000 6.12 9.57 38.11 2.23 R
3516 4405 0.734889 CCTGCAAATAAGAGGCACGG 59.265 55.000 0.00 0.00 33.34 4.94 R
3813 4702 1.077828 TCTGTCATCCCACTGACCTCT 59.922 52.381 2.08 0.00 43.99 3.69 R
4164 5053 3.374988 TCTTGTAATCAATTGCAGCCTCG 59.625 43.478 0.00 0.00 34.01 4.63 R
4317 5206 2.283529 ACAGACCTGGTACTGCGGG 61.284 63.158 19.55 0.00 37.61 6.13 R
4876 6058 3.320626 CATGTCCATGTACATCCTAGCG 58.679 50.000 5.07 0.00 38.01 4.26 R
5436 6636 8.298854 CAAAAGAAACCAGATGTTATGACATGA 58.701 33.333 8.00 0.00 46.27 3.07 R
5506 6713 4.730657 CAGCATCTTCAGGAAATGTGAAC 58.269 43.478 0.00 0.00 30.69 3.18 R
5557 6764 1.498176 AAGGGAAACGCTTAGGGGCT 61.498 55.000 0.55 0.00 34.91 5.19 R
7797 12755 0.179018 GCCTCTCCATTACGGCCAAT 60.179 55.000 2.24 0.00 36.56 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.841422 CATCCAGACTTTGATTCAGACCT 58.159 43.478 0.00 0.00 0.00 3.85
23 24 4.982241 TCCAGACTTTGATTCAGACCTT 57.018 40.909 0.00 0.00 0.00 3.50
24 25 5.310409 TCCAGACTTTGATTCAGACCTTT 57.690 39.130 0.00 0.00 0.00 3.11
25 26 5.694995 TCCAGACTTTGATTCAGACCTTTT 58.305 37.500 0.00 0.00 0.00 2.27
26 27 6.129179 TCCAGACTTTGATTCAGACCTTTTT 58.871 36.000 0.00 0.00 0.00 1.94
44 45 1.904287 TTTACATCCACCACACCTGC 58.096 50.000 0.00 0.00 0.00 4.85
45 46 0.767998 TTACATCCACCACACCTGCA 59.232 50.000 0.00 0.00 0.00 4.41
46 47 0.991146 TACATCCACCACACCTGCAT 59.009 50.000 0.00 0.00 0.00 3.96
47 48 0.991146 ACATCCACCACACCTGCATA 59.009 50.000 0.00 0.00 0.00 3.14
48 49 1.354031 ACATCCACCACACCTGCATAA 59.646 47.619 0.00 0.00 0.00 1.90
49 50 2.025037 ACATCCACCACACCTGCATAAT 60.025 45.455 0.00 0.00 0.00 1.28
50 51 2.418368 TCCACCACACCTGCATAATC 57.582 50.000 0.00 0.00 0.00 1.75
51 52 1.915489 TCCACCACACCTGCATAATCT 59.085 47.619 0.00 0.00 0.00 2.40
52 53 2.019249 CCACCACACCTGCATAATCTG 58.981 52.381 0.00 0.00 0.00 2.90
53 54 2.356022 CCACCACACCTGCATAATCTGA 60.356 50.000 0.00 0.00 0.00 3.27
54 55 3.548770 CACCACACCTGCATAATCTGAT 58.451 45.455 0.00 0.00 0.00 2.90
55 56 4.444733 CCACCACACCTGCATAATCTGATA 60.445 45.833 0.00 0.00 0.00 2.15
56 57 4.753610 CACCACACCTGCATAATCTGATAG 59.246 45.833 0.00 0.00 0.00 2.08
57 58 4.410228 ACCACACCTGCATAATCTGATAGT 59.590 41.667 0.00 0.00 0.00 2.12
58 59 5.104360 ACCACACCTGCATAATCTGATAGTT 60.104 40.000 0.00 0.00 0.00 2.24
59 60 5.824624 CCACACCTGCATAATCTGATAGTTT 59.175 40.000 0.00 0.00 0.00 2.66
60 61 6.319658 CCACACCTGCATAATCTGATAGTTTT 59.680 38.462 0.00 0.00 0.00 2.43
61 62 7.148018 CCACACCTGCATAATCTGATAGTTTTT 60.148 37.037 0.00 0.00 0.00 1.94
62 63 7.912250 CACACCTGCATAATCTGATAGTTTTTC 59.088 37.037 0.00 0.00 0.00 2.29
63 64 7.831193 ACACCTGCATAATCTGATAGTTTTTCT 59.169 33.333 0.00 0.00 0.00 2.52
64 65 8.341173 CACCTGCATAATCTGATAGTTTTTCTC 58.659 37.037 0.00 0.00 0.00 2.87
65 66 7.500559 ACCTGCATAATCTGATAGTTTTTCTCC 59.499 37.037 0.00 0.00 0.00 3.71
66 67 7.040823 CCTGCATAATCTGATAGTTTTTCTCCC 60.041 40.741 0.00 0.00 0.00 4.30
67 68 6.483307 TGCATAATCTGATAGTTTTTCTCCCG 59.517 38.462 0.00 0.00 0.00 5.14
68 69 6.483640 GCATAATCTGATAGTTTTTCTCCCGT 59.516 38.462 0.00 0.00 0.00 5.28
69 70 7.012421 GCATAATCTGATAGTTTTTCTCCCGTT 59.988 37.037 0.00 0.00 0.00 4.44
70 71 6.743575 AATCTGATAGTTTTTCTCCCGTTG 57.256 37.500 0.00 0.00 0.00 4.10
71 72 4.000988 TCTGATAGTTTTTCTCCCGTTGC 58.999 43.478 0.00 0.00 0.00 4.17
72 73 3.745799 TGATAGTTTTTCTCCCGTTGCA 58.254 40.909 0.00 0.00 0.00 4.08
73 74 4.138290 TGATAGTTTTTCTCCCGTTGCAA 58.862 39.130 0.00 0.00 0.00 4.08
74 75 2.863401 AGTTTTTCTCCCGTTGCAAC 57.137 45.000 19.89 19.89 0.00 4.17
75 76 2.096248 AGTTTTTCTCCCGTTGCAACA 58.904 42.857 28.01 9.07 0.00 3.33
76 77 2.159296 AGTTTTTCTCCCGTTGCAACAC 60.159 45.455 28.01 15.21 0.00 3.32
77 78 1.464734 TTTTCTCCCGTTGCAACACA 58.535 45.000 28.01 10.71 0.00 3.72
78 79 0.736053 TTTCTCCCGTTGCAACACAC 59.264 50.000 28.01 3.05 0.00 3.82
79 80 0.393132 TTCTCCCGTTGCAACACACA 60.393 50.000 28.01 8.63 0.00 3.72
80 81 0.393132 TCTCCCGTTGCAACACACAA 60.393 50.000 28.01 8.47 0.00 3.33
81 82 0.029300 CTCCCGTTGCAACACACAAG 59.971 55.000 28.01 13.70 0.00 3.16
82 83 1.588667 CCCGTTGCAACACACAAGC 60.589 57.895 28.01 0.00 0.00 4.01
83 84 1.138459 CCGTTGCAACACACAAGCA 59.862 52.632 28.01 0.00 36.32 3.91
84 85 0.248990 CCGTTGCAACACACAAGCAT 60.249 50.000 28.01 0.00 38.19 3.79
85 86 1.001924 CCGTTGCAACACACAAGCATA 60.002 47.619 28.01 0.00 38.19 3.14
86 87 2.351641 CCGTTGCAACACACAAGCATAT 60.352 45.455 28.01 0.00 38.19 1.78
87 88 3.307674 CGTTGCAACACACAAGCATATT 58.692 40.909 28.01 0.00 38.19 1.28
88 89 3.735240 CGTTGCAACACACAAGCATATTT 59.265 39.130 28.01 0.00 38.19 1.40
89 90 4.914504 CGTTGCAACACACAAGCATATTTA 59.085 37.500 28.01 0.00 38.19 1.40
90 91 5.572511 CGTTGCAACACACAAGCATATTTAT 59.427 36.000 28.01 0.00 38.19 1.40
91 92 6.089283 CGTTGCAACACACAAGCATATTTATT 59.911 34.615 28.01 0.00 38.19 1.40
92 93 7.272299 CGTTGCAACACACAAGCATATTTATTA 59.728 33.333 28.01 0.00 38.19 0.98
93 94 8.586273 GTTGCAACACACAAGCATATTTATTAG 58.414 33.333 24.52 0.00 38.19 1.73
94 95 7.825681 TGCAACACACAAGCATATTTATTAGT 58.174 30.769 0.00 0.00 32.55 2.24
95 96 7.754475 TGCAACACACAAGCATATTTATTAGTG 59.246 33.333 0.00 0.00 32.55 2.74
205 206 9.297586 CAAAGTTATACGCTTATAAGTGAGTGA 57.702 33.333 28.33 12.53 39.74 3.41
257 258 9.256477 GCTATAAATTGTTTGTAAATTAGGGCC 57.744 33.333 0.00 0.00 0.00 5.80
276 277 2.825532 GCCCCCATTTTGTATATCGCAT 59.174 45.455 0.00 0.00 0.00 4.73
282 283 3.478857 TTTTGTATATCGCATCGGGGT 57.521 42.857 0.00 0.00 0.00 4.95
285 286 0.175073 GTATATCGCATCGGGGTCCC 59.825 60.000 0.00 0.00 0.00 4.46
327 328 3.636300 TGGTGCTCTTGTTGCAAGTTTAT 59.364 39.130 0.00 0.00 42.41 1.40
330 331 4.913924 GTGCTCTTGTTGCAAGTTTATCAG 59.086 41.667 0.00 0.00 42.41 2.90
356 357 6.001460 TCCAAGCTTCCTATTCGAAAAGAAA 58.999 36.000 0.00 0.00 42.91 2.52
545 1138 2.119801 ATGCTTTCACTTCGCCATCT 57.880 45.000 0.00 0.00 0.00 2.90
604 1197 0.549950 ATCAGGCTTGTCCATCCCAG 59.450 55.000 0.00 0.00 37.29 4.45
608 1201 1.005215 AGGCTTGTCCATCCCAGAAAG 59.995 52.381 0.00 0.00 37.29 2.62
618 1211 2.629656 CCCAGAAAGCAACGGCCAG 61.630 63.158 2.24 0.00 42.56 4.85
625 1218 3.140814 GCAACGGCCAGGATTCCC 61.141 66.667 2.24 0.00 0.00 3.97
670 1263 2.528818 CCACCAAGCCTCTCCACCA 61.529 63.158 0.00 0.00 0.00 4.17
723 1326 2.028925 CTTGCCGCAAAACCCCAC 59.971 61.111 7.33 0.00 0.00 4.61
724 1327 3.513768 CTTGCCGCAAAACCCCACC 62.514 63.158 7.33 0.00 0.00 4.61
845 1448 2.420568 CGAACCCTAGCCGCCACTA 61.421 63.158 0.00 0.00 0.00 2.74
1338 1956 4.973168 ACATGGATATCTAATGTTGGCGT 58.027 39.130 14.90 0.00 30.41 5.68
1342 1960 4.134563 GGATATCTAATGTTGGCGTTGGT 58.865 43.478 2.05 0.00 0.00 3.67
1362 1988 0.584876 GGCGTTACTGTTGCGTTCTT 59.415 50.000 5.79 0.00 0.00 2.52
1466 2211 6.998074 TCTGCGATTACTTCAATTTATCCCAT 59.002 34.615 0.00 0.00 0.00 4.00
1467 2212 8.154203 TCTGCGATTACTTCAATTTATCCCATA 58.846 33.333 0.00 0.00 0.00 2.74
1619 2401 1.350351 AGACTGTTTGCTGCATCCTCT 59.650 47.619 1.84 0.00 0.00 3.69
1720 2503 1.959282 CCTAGAATTCCCAAGGCATGC 59.041 52.381 9.90 9.90 0.00 4.06
1948 2746 4.380531 TGTAATAGTTATGGAGCTGCAGC 58.619 43.478 31.53 31.53 42.49 5.25
2002 2800 6.773976 TTATGGAAATCAGATTTGGGTGTC 57.226 37.500 13.38 0.00 31.47 3.67
2123 2922 0.041238 AACCTGAGATGTCCGAGGGA 59.959 55.000 1.86 0.00 0.00 4.20
2150 2949 3.362581 GCATGTAGCAACCGAGCTA 57.637 52.632 0.00 0.00 44.50 3.32
2157 2956 2.533266 AGCAACCGAGCTATGGTATG 57.467 50.000 10.36 11.29 44.50 2.39
2158 2957 0.868406 GCAACCGAGCTATGGTATGC 59.132 55.000 19.29 19.29 39.29 3.14
2159 2958 1.810031 GCAACCGAGCTATGGTATGCA 60.810 52.381 24.06 0.00 39.29 3.96
2160 2959 2.138320 CAACCGAGCTATGGTATGCAG 58.862 52.381 10.36 0.00 39.29 4.41
2161 2960 0.034059 ACCGAGCTATGGTATGCAGC 59.966 55.000 8.33 0.00 38.15 5.25
2162 2961 0.033920 CCGAGCTATGGTATGCAGCA 59.966 55.000 0.00 0.00 37.78 4.41
2163 2962 1.143305 CGAGCTATGGTATGCAGCAC 58.857 55.000 0.00 0.00 37.78 4.40
2164 2963 1.517242 GAGCTATGGTATGCAGCACC 58.483 55.000 12.35 12.35 37.78 5.01
2165 2964 0.250038 AGCTATGGTATGCAGCACCG 60.250 55.000 13.90 3.37 39.04 4.94
2166 2965 1.230635 GCTATGGTATGCAGCACCGG 61.231 60.000 13.90 0.00 39.04 5.28
2167 2966 0.106708 CTATGGTATGCAGCACCGGT 59.893 55.000 0.00 0.00 39.04 5.28
2168 2967 1.343142 CTATGGTATGCAGCACCGGTA 59.657 52.381 6.87 9.31 39.04 4.02
2169 2968 0.544223 ATGGTATGCAGCACCGGTAA 59.456 50.000 6.87 0.00 39.04 2.85
2170 2969 0.391927 TGGTATGCAGCACCGGTAAC 60.392 55.000 6.87 1.82 39.04 2.50
2171 2970 0.391927 GGTATGCAGCACCGGTAACA 60.392 55.000 6.87 3.26 0.00 2.41
2172 2971 1.006832 GTATGCAGCACCGGTAACAG 58.993 55.000 6.87 0.00 0.00 3.16
2173 2972 0.107897 TATGCAGCACCGGTAACAGG 60.108 55.000 6.87 0.00 36.50 4.00
2174 2973 1.836999 ATGCAGCACCGGTAACAGGA 61.837 55.000 6.87 0.47 34.83 3.86
2175 2974 2.033194 GCAGCACCGGTAACAGGAC 61.033 63.158 6.87 0.00 34.83 3.85
2176 2975 1.369692 CAGCACCGGTAACAGGACA 59.630 57.895 6.87 0.00 34.83 4.02
2177 2976 0.250124 CAGCACCGGTAACAGGACAA 60.250 55.000 6.87 0.00 34.83 3.18
2178 2977 0.470766 AGCACCGGTAACAGGACAAA 59.529 50.000 6.87 0.00 34.83 2.83
2179 2978 1.134037 AGCACCGGTAACAGGACAAAA 60.134 47.619 6.87 0.00 34.83 2.44
2180 2979 1.677052 GCACCGGTAACAGGACAAAAA 59.323 47.619 6.87 0.00 34.83 1.94
2181 2980 2.542205 GCACCGGTAACAGGACAAAAAC 60.542 50.000 6.87 0.00 34.83 2.43
2256 3055 4.589216 CTGGAAAAGGAAATGCACAAGA 57.411 40.909 0.00 0.00 0.00 3.02
2386 3250 4.067192 GCTACTCCCTCCGTTTGTTTTTA 58.933 43.478 0.00 0.00 0.00 1.52
2388 3252 5.876460 GCTACTCCCTCCGTTTGTTTTTATA 59.124 40.000 0.00 0.00 0.00 0.98
2389 3253 6.372381 GCTACTCCCTCCGTTTGTTTTTATAA 59.628 38.462 0.00 0.00 0.00 0.98
2391 3255 6.536447 ACTCCCTCCGTTTGTTTTTATAAGA 58.464 36.000 0.00 0.00 0.00 2.10
2392 3256 6.429078 ACTCCCTCCGTTTGTTTTTATAAGAC 59.571 38.462 0.00 0.00 0.00 3.01
2395 3259 6.293571 CCCTCCGTTTGTTTTTATAAGACGTT 60.294 38.462 0.00 0.00 0.00 3.99
2397 3263 7.321984 CCTCCGTTTGTTTTTATAAGACGTTTC 59.678 37.037 0.00 0.00 0.00 2.78
2398 3264 7.692088 TCCGTTTGTTTTTATAAGACGTTTCA 58.308 30.769 0.00 0.00 0.00 2.69
2399 3265 7.851963 TCCGTTTGTTTTTATAAGACGTTTCAG 59.148 33.333 0.00 0.00 0.00 3.02
2400 3266 7.851963 CCGTTTGTTTTTATAAGACGTTTCAGA 59.148 33.333 0.00 0.00 0.00 3.27
2401 3267 8.667204 CGTTTGTTTTTATAAGACGTTTCAGAC 58.333 33.333 0.00 0.00 0.00 3.51
2402 3268 9.493206 GTTTGTTTTTATAAGACGTTTCAGACA 57.507 29.630 0.00 0.00 0.00 3.41
2404 3270 7.349711 TGTTTTTATAAGACGTTTCAGACAGC 58.650 34.615 0.00 0.00 0.00 4.40
2406 3272 7.724305 TTTTATAAGACGTTTCAGACAGCTT 57.276 32.000 0.00 0.00 0.00 3.74
2407 3273 6.706055 TTATAAGACGTTTCAGACAGCTTG 57.294 37.500 0.00 0.00 0.00 4.01
2408 3274 1.221414 AGACGTTTCAGACAGCTTGC 58.779 50.000 0.00 0.00 0.00 4.01
2409 3275 1.202580 AGACGTTTCAGACAGCTTGCT 60.203 47.619 0.00 0.00 0.00 3.91
2410 3276 1.599542 GACGTTTCAGACAGCTTGCTT 59.400 47.619 0.00 0.00 0.00 3.91
2411 3277 2.017049 ACGTTTCAGACAGCTTGCTTT 58.983 42.857 0.00 0.00 0.00 3.51
2412 3278 2.223340 ACGTTTCAGACAGCTTGCTTTG 60.223 45.455 0.00 0.00 0.00 2.77
2413 3279 2.223340 CGTTTCAGACAGCTTGCTTTGT 60.223 45.455 0.00 0.00 0.00 2.83
2415 3281 4.282873 GTTTCAGACAGCTTGCTTTGTAC 58.717 43.478 0.00 0.00 0.00 2.90
2416 3282 3.475566 TCAGACAGCTTGCTTTGTACT 57.524 42.857 0.00 0.00 0.00 2.73
2417 3283 3.133691 TCAGACAGCTTGCTTTGTACTG 58.866 45.455 0.00 0.00 0.00 2.74
2418 3284 2.874701 CAGACAGCTTGCTTTGTACTGT 59.125 45.455 0.00 0.00 43.93 3.55
2420 3286 3.947834 AGACAGCTTGCTTTGTACTGTTT 59.052 39.130 0.00 0.00 41.45 2.83
2421 3287 4.399303 AGACAGCTTGCTTTGTACTGTTTT 59.601 37.500 0.00 0.00 41.45 2.43
2422 3288 5.588648 AGACAGCTTGCTTTGTACTGTTTTA 59.411 36.000 0.00 0.00 41.45 1.52
2423 3289 5.821204 ACAGCTTGCTTTGTACTGTTTTAG 58.179 37.500 0.00 0.00 38.38 1.85
2424 3290 5.588648 ACAGCTTGCTTTGTACTGTTTTAGA 59.411 36.000 0.00 0.00 38.38 2.10
2425 3291 5.909610 CAGCTTGCTTTGTACTGTTTTAGAC 59.090 40.000 0.00 0.00 0.00 2.59
2426 3292 5.588648 AGCTTGCTTTGTACTGTTTTAGACA 59.411 36.000 0.00 0.00 36.65 3.41
2439 3305 6.844696 TGTTTTAGACAGTGTCTGAATGTC 57.155 37.500 31.70 21.61 43.30 3.06
2447 3313 5.357257 ACAGTGTCTGAATGTCTAAAACGT 58.643 37.500 3.70 0.00 35.18 3.99
2448 3314 5.462398 ACAGTGTCTGAATGTCTAAAACGTC 59.538 40.000 3.70 0.00 35.18 4.34
2450 3316 6.201044 CAGTGTCTGAATGTCTAAAACGTCTT 59.799 38.462 0.00 0.00 32.44 3.01
2451 3317 7.381408 CAGTGTCTGAATGTCTAAAACGTCTTA 59.619 37.037 0.00 0.00 32.44 2.10
2453 3319 9.350357 GTGTCTGAATGTCTAAAACGTCTTATA 57.650 33.333 0.00 0.00 0.00 0.98
2454 3320 9.917129 TGTCTGAATGTCTAAAACGTCTTATAA 57.083 29.630 0.00 0.00 0.00 0.98
2467 3333 7.653767 AACGTCTTATAAAAGTGAACAGAGG 57.346 36.000 0.00 0.00 34.13 3.69
2468 3334 6.756221 ACGTCTTATAAAAGTGAACAGAGGT 58.244 36.000 0.00 0.00 34.13 3.85
2469 3335 7.889469 ACGTCTTATAAAAGTGAACAGAGGTA 58.111 34.615 0.00 0.00 34.13 3.08
2470 3336 8.027771 ACGTCTTATAAAAGTGAACAGAGGTAG 58.972 37.037 0.00 0.00 34.13 3.18
2471 3337 8.027771 CGTCTTATAAAAGTGAACAGAGGTAGT 58.972 37.037 0.00 0.00 34.13 2.73
2481 3347 5.062308 GTGAACAGAGGTAGTAGCATTTTCG 59.938 44.000 1.58 0.00 0.00 3.46
2602 3475 4.469657 TCATGGGCAAAGTAATATGGTCC 58.530 43.478 0.00 0.00 0.00 4.46
2605 3478 3.455177 TGGGCAAAGTAATATGGTCCGTA 59.545 43.478 0.00 0.00 0.00 4.02
2623 3496 6.039382 GGTCCGTAATGAGCAATTATTTTCCT 59.961 38.462 0.00 0.00 33.32 3.36
2638 3511 3.552132 TTTCCTTTTTCCTGTTTGCCC 57.448 42.857 0.00 0.00 0.00 5.36
2707 3593 6.752351 GGTATTATCATACTCCTATGCGTGTG 59.248 42.308 0.00 0.00 36.28 3.82
2880 3766 3.278592 GAACAGGGCTGCTGCTTGC 62.279 63.158 15.64 5.42 43.25 4.01
2930 3816 6.225981 TGCTGTTCTTATATCTGCTCTGAA 57.774 37.500 0.00 0.00 0.00 3.02
3082 3968 3.316029 TGAACTGTGCCTGAAATCAAGTG 59.684 43.478 0.00 0.00 0.00 3.16
3136 4023 9.675464 TCTGTTTCGGATGGTAATAAGTAAATT 57.325 29.630 0.00 0.00 0.00 1.82
3142 4029 5.049954 GGATGGTAATAAGTAAATTCGCGCA 60.050 40.000 8.75 0.00 0.00 6.09
3147 4034 1.803334 AAGTAAATTCGCGCAGACCA 58.197 45.000 8.75 0.00 0.00 4.02
3176 4063 8.146479 TCTGCATTTGATGTCAATATACTGAC 57.854 34.615 7.38 7.38 45.01 3.51
3237 4124 9.886132 TTTCTTTCATAATACCCAGTAGAACTC 57.114 33.333 0.00 0.00 0.00 3.01
3238 4125 8.019656 TCTTTCATAATACCCAGTAGAACTCC 57.980 38.462 0.00 0.00 0.00 3.85
3373 4262 3.997021 CTGTCCAGTTAGTAAGCTTGTGG 59.003 47.826 9.86 6.36 0.00 4.17
3395 4284 5.880332 TGGGACTGAAGCTAATGTGAATAAC 59.120 40.000 0.00 0.00 0.00 1.89
3422 4311 5.605534 AGCTACATAGTTGGTCATCATCAC 58.394 41.667 0.00 0.00 0.00 3.06
3423 4312 5.129320 AGCTACATAGTTGGTCATCATCACA 59.871 40.000 0.00 0.00 0.00 3.58
3516 4405 5.230942 ACTCCTTAATGCGTATATGCTGAC 58.769 41.667 17.56 0.00 35.36 3.51
3520 4409 1.783284 ATGCGTATATGCTGACCGTG 58.217 50.000 17.56 0.00 35.36 4.94
3570 4459 3.927142 CCAACTTAAGTCTAGACAAGGCG 59.073 47.826 24.44 13.85 33.88 5.52
3654 4543 3.069872 TCTGTGGTCTTTTTGGTAGCGTA 59.930 43.478 0.00 0.00 0.00 4.42
3813 4702 5.593909 AGATGGTGATCTTGTTGTTTTCACA 59.406 36.000 0.00 0.00 35.15 3.58
4002 4891 8.816894 AGTCTGAGAGAATGTATAAAAGAACCA 58.183 33.333 0.00 0.00 0.00 3.67
4008 4897 7.829706 AGAGAATGTATAAAAGAACCAGGGAAC 59.170 37.037 0.00 0.00 0.00 3.62
4164 5053 7.900782 TGTGGAGTTTACTGCTTCTATTAAC 57.099 36.000 3.08 0.00 35.18 2.01
4305 5194 2.952310 AGAAGTTGTGAAGGCTTGTTCC 59.048 45.455 3.46 0.00 0.00 3.62
4317 5206 2.609491 GGCTTGTTCCGGGAAATTTCAC 60.609 50.000 19.49 15.33 0.00 3.18
4333 5222 2.119832 ACCCGCAGTACCAGGTCT 59.880 61.111 0.00 0.00 0.00 3.85
4334 5223 2.283529 ACCCGCAGTACCAGGTCTG 61.284 63.158 0.00 4.99 35.12 3.51
4396 5285 7.169158 TCTGTTGGTTTTTGTCTGATTTTCT 57.831 32.000 0.00 0.00 0.00 2.52
4398 5287 7.759433 TCTGTTGGTTTTTGTCTGATTTTCTTC 59.241 33.333 0.00 0.00 0.00 2.87
5463 6670 6.980593 TGTCATAACATCTGGTTTCTTTTGG 58.019 36.000 0.00 0.00 40.96 3.28
5506 6713 1.350193 ATCGTGTGAAGCAGCTAACG 58.650 50.000 0.00 4.42 0.00 3.18
5557 6764 0.397941 CTGGTGCTCCTTTCTGGTCA 59.602 55.000 6.34 0.00 37.07 4.02
5794 7032 0.976641 CCACTAACCTCTCCAGTGCA 59.023 55.000 0.00 0.00 38.67 4.57
5957 7206 0.555769 AGACTGTTTTCCCTTGCCCA 59.444 50.000 0.00 0.00 0.00 5.36
6075 7324 6.049149 ACAGGGATTATGTAATTCAGTCACG 58.951 40.000 0.00 0.00 0.00 4.35
6227 10822 5.095691 AGAACAAGTGTTTTCTGTATGCG 57.904 39.130 0.00 0.00 38.56 4.73
6307 10902 2.277084 GTGCTGGTACCGTAAAGATGG 58.723 52.381 7.57 0.00 37.80 3.51
6340 10937 1.167851 TGCCTGTGTCAAATAGCTGC 58.832 50.000 0.00 0.00 0.00 5.25
6469 11080 3.006110 TCTGACGTACCACTGTAAAAGGG 59.994 47.826 0.00 0.00 0.00 3.95
6640 11252 0.538287 AGGTTGACAAGCTGAAGGCC 60.538 55.000 18.73 0.00 43.05 5.19
6853 11521 5.683249 GCATCAAGACATGAGATGGACAGTA 60.683 44.000 17.23 0.00 42.53 2.74
7093 11764 0.035152 TTGTGGCTTGCGAGGATGAT 60.035 50.000 2.37 0.00 0.00 2.45
7184 11855 5.203528 TGTGAGGATAGATGATGAGTGTGA 58.796 41.667 0.00 0.00 0.00 3.58
7215 11886 4.103153 TCCTGTGGAGAGATGTTTGAAACT 59.897 41.667 9.69 0.00 0.00 2.66
7318 12001 2.915659 TGGGTCGTTCCGCTCTGT 60.916 61.111 0.00 0.00 37.00 3.41
7422 12110 1.066215 GGGTTGATGTTTTGGGATGGC 60.066 52.381 0.00 0.00 0.00 4.40
7476 12164 3.754850 CCTCATCATCAGTTTCACTTGCA 59.245 43.478 0.00 0.00 0.00 4.08
7477 12165 4.216902 CCTCATCATCAGTTTCACTTGCAA 59.783 41.667 0.00 0.00 0.00 4.08
7568 12257 3.407424 TCCTTGAGTTGAGGTGTCATG 57.593 47.619 0.00 0.00 35.71 3.07
7570 12259 3.901222 TCCTTGAGTTGAGGTGTCATGTA 59.099 43.478 0.00 0.00 35.71 2.29
7634 12325 7.703197 GCAGTTTTAGTTTTGCTACAACCTTTA 59.297 33.333 0.00 0.00 39.79 1.85
7666 12357 5.261209 AGCATCTCTACAAACAGCTAGAG 57.739 43.478 2.98 2.98 38.14 2.43
7692 12390 4.383880 GGATAAATTATACCCCTCGGCCTC 60.384 50.000 0.00 0.00 0.00 4.70
7693 12391 2.112279 AATTATACCCCTCGGCCTCA 57.888 50.000 0.00 0.00 0.00 3.86
7714 12412 0.401395 AAGTGAGGTCAACTCCCCCA 60.401 55.000 0.00 0.00 46.01 4.96
7730 12687 1.133606 CCCCAAATATACTTGCCCGGT 60.134 52.381 0.00 0.00 0.00 5.28
7736 12693 1.692173 TATACTTGCCCGGTGCCTCC 61.692 60.000 11.72 0.00 40.16 4.30
7754 12711 3.146847 CTCCCGGAGTAAAAGTTTTGCT 58.853 45.455 17.51 17.51 0.00 3.91
7760 12718 3.255888 GGAGTAAAAGTTTTGCTCCCCTG 59.744 47.826 36.73 0.00 37.27 4.45
7774 12732 1.977544 CCCTGTCTCCCGTTCGAGT 60.978 63.158 0.00 0.00 0.00 4.18
7793 12751 4.740822 GCCACCACCGATGCCCTT 62.741 66.667 0.00 0.00 0.00 3.95
7797 12755 0.180171 CACCACCGATGCCCTTGATA 59.820 55.000 0.00 0.00 0.00 2.15
7798 12756 1.140312 ACCACCGATGCCCTTGATAT 58.860 50.000 0.00 0.00 0.00 1.63
7883 12841 4.494515 GGAAACGACCCCTGCTTT 57.505 55.556 0.00 0.00 0.00 3.51
7884 12842 1.956802 GGAAACGACCCCTGCTTTG 59.043 57.895 0.00 0.00 0.00 2.77
7889 12847 3.376918 GACCCCTGCTTTGCTGCC 61.377 66.667 0.00 0.00 0.00 4.85
7925 12887 1.407618 GGCACCAAAAACCTTCTTCGT 59.592 47.619 0.00 0.00 0.00 3.85
7931 12893 1.029681 AAAACCTTCTTCGTGCCACC 58.970 50.000 0.00 0.00 0.00 4.61
7951 12913 1.078497 CATAGCCAACCAGTGCCGA 60.078 57.895 0.00 0.00 0.00 5.54
7955 12917 2.669569 CCAACCAGTGCCGACAGG 60.670 66.667 0.00 0.00 41.62 4.00
7961 12923 1.374758 CAGTGCCGACAGGAAGGTC 60.375 63.158 0.00 0.00 41.02 3.85
8002 12976 4.309950 GGCGACGGTTGGTCACCT 62.310 66.667 0.00 0.00 46.42 4.00
8014 12988 1.600916 GTCACCTTCCCGCTGCTTT 60.601 57.895 0.00 0.00 0.00 3.51
8117 13091 3.386237 GCCTCCTCACCTGTCGCT 61.386 66.667 0.00 0.00 0.00 4.93
8131 13105 1.973281 TCGCTTCGTACCCCGTCTT 60.973 57.895 0.00 0.00 37.94 3.01
8133 13107 1.515736 GCTTCGTACCCCGTCTTCG 60.516 63.158 0.00 0.00 37.94 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.511386 AAGGTCTGAATCAAAGTCTGGAT 57.489 39.130 0.00 0.00 0.00 3.41
2 3 4.982241 AAGGTCTGAATCAAAGTCTGGA 57.018 40.909 0.00 0.00 0.00 3.86
23 24 2.625790 GCAGGTGTGGTGGATGTAAAAA 59.374 45.455 0.00 0.00 0.00 1.94
24 25 2.235016 GCAGGTGTGGTGGATGTAAAA 58.765 47.619 0.00 0.00 0.00 1.52
25 26 1.143889 TGCAGGTGTGGTGGATGTAAA 59.856 47.619 0.00 0.00 0.00 2.01
26 27 0.767998 TGCAGGTGTGGTGGATGTAA 59.232 50.000 0.00 0.00 0.00 2.41
27 28 0.991146 ATGCAGGTGTGGTGGATGTA 59.009 50.000 0.00 0.00 0.00 2.29
28 29 0.991146 TATGCAGGTGTGGTGGATGT 59.009 50.000 0.00 0.00 0.00 3.06
29 30 2.127271 TTATGCAGGTGTGGTGGATG 57.873 50.000 0.00 0.00 0.00 3.51
30 31 2.511218 AGATTATGCAGGTGTGGTGGAT 59.489 45.455 0.00 0.00 0.00 3.41
31 32 1.915489 AGATTATGCAGGTGTGGTGGA 59.085 47.619 0.00 0.00 0.00 4.02
32 33 2.019249 CAGATTATGCAGGTGTGGTGG 58.981 52.381 0.00 0.00 0.00 4.61
33 34 2.989909 TCAGATTATGCAGGTGTGGTG 58.010 47.619 0.00 0.00 0.00 4.17
34 35 3.939740 ATCAGATTATGCAGGTGTGGT 57.060 42.857 0.00 0.00 0.00 4.16
35 36 4.965814 ACTATCAGATTATGCAGGTGTGG 58.034 43.478 0.00 0.00 0.00 4.17
36 37 6.932356 AAACTATCAGATTATGCAGGTGTG 57.068 37.500 0.00 0.00 0.00 3.82
37 38 7.831193 AGAAAAACTATCAGATTATGCAGGTGT 59.169 33.333 0.00 0.00 0.00 4.16
38 39 8.218338 AGAAAAACTATCAGATTATGCAGGTG 57.782 34.615 0.00 0.00 0.00 4.00
39 40 7.500559 GGAGAAAAACTATCAGATTATGCAGGT 59.499 37.037 0.00 0.00 0.00 4.00
40 41 7.040823 GGGAGAAAAACTATCAGATTATGCAGG 60.041 40.741 0.00 0.00 0.00 4.85
41 42 7.307632 CGGGAGAAAAACTATCAGATTATGCAG 60.308 40.741 0.00 0.00 0.00 4.41
42 43 6.483307 CGGGAGAAAAACTATCAGATTATGCA 59.517 38.462 0.00 0.00 0.00 3.96
43 44 6.483640 ACGGGAGAAAAACTATCAGATTATGC 59.516 38.462 0.00 0.00 0.00 3.14
44 45 8.338259 CAACGGGAGAAAAACTATCAGATTATG 58.662 37.037 0.00 0.00 0.00 1.90
45 46 7.012421 GCAACGGGAGAAAAACTATCAGATTAT 59.988 37.037 0.00 0.00 0.00 1.28
46 47 6.315393 GCAACGGGAGAAAAACTATCAGATTA 59.685 38.462 0.00 0.00 0.00 1.75
47 48 5.123979 GCAACGGGAGAAAAACTATCAGATT 59.876 40.000 0.00 0.00 0.00 2.40
48 49 4.636206 GCAACGGGAGAAAAACTATCAGAT 59.364 41.667 0.00 0.00 0.00 2.90
49 50 4.000988 GCAACGGGAGAAAAACTATCAGA 58.999 43.478 0.00 0.00 0.00 3.27
50 51 3.751175 TGCAACGGGAGAAAAACTATCAG 59.249 43.478 0.00 0.00 0.00 2.90
51 52 3.745799 TGCAACGGGAGAAAAACTATCA 58.254 40.909 0.00 0.00 0.00 2.15
52 53 4.023536 TGTTGCAACGGGAGAAAAACTATC 60.024 41.667 23.79 0.00 0.00 2.08
53 54 3.886505 TGTTGCAACGGGAGAAAAACTAT 59.113 39.130 23.79 0.00 0.00 2.12
54 55 3.065648 GTGTTGCAACGGGAGAAAAACTA 59.934 43.478 23.79 0.00 0.00 2.24
55 56 2.096248 TGTTGCAACGGGAGAAAAACT 58.904 42.857 23.79 0.00 0.00 2.66
56 57 2.190161 GTGTTGCAACGGGAGAAAAAC 58.810 47.619 23.79 9.80 0.00 2.43
57 58 1.819288 TGTGTTGCAACGGGAGAAAAA 59.181 42.857 23.79 0.57 0.00 1.94
58 59 1.133407 GTGTGTTGCAACGGGAGAAAA 59.867 47.619 23.79 1.33 0.00 2.29
59 60 0.736053 GTGTGTTGCAACGGGAGAAA 59.264 50.000 23.79 2.11 0.00 2.52
60 61 0.393132 TGTGTGTTGCAACGGGAGAA 60.393 50.000 23.79 2.89 0.00 2.87
61 62 0.393132 TTGTGTGTTGCAACGGGAGA 60.393 50.000 23.79 7.77 0.00 3.71
62 63 0.029300 CTTGTGTGTTGCAACGGGAG 59.971 55.000 23.79 13.05 0.00 4.30
63 64 1.999071 GCTTGTGTGTTGCAACGGGA 61.999 55.000 23.79 7.92 0.00 5.14
64 65 1.588667 GCTTGTGTGTTGCAACGGG 60.589 57.895 23.79 10.97 0.00 5.28
65 66 0.248990 ATGCTTGTGTGTTGCAACGG 60.249 50.000 23.79 10.65 40.24 4.44
66 67 2.397777 TATGCTTGTGTGTTGCAACG 57.602 45.000 23.79 10.03 40.24 4.10
67 68 6.949578 ATAAATATGCTTGTGTGTTGCAAC 57.050 33.333 22.83 22.83 40.24 4.17
68 69 8.303156 ACTAATAAATATGCTTGTGTGTTGCAA 58.697 29.630 0.00 0.00 40.24 4.08
69 70 7.754475 CACTAATAAATATGCTTGTGTGTTGCA 59.246 33.333 0.00 0.00 41.13 4.08
70 71 7.754924 ACACTAATAAATATGCTTGTGTGTTGC 59.245 33.333 0.00 0.00 36.28 4.17
71 72 9.064804 CACACTAATAAATATGCTTGTGTGTTG 57.935 33.333 12.83 0.00 44.86 3.33
257 258 3.126858 CCGATGCGATATACAAAATGGGG 59.873 47.826 0.00 0.00 0.00 4.96
282 283 2.557317 GCCGTCTTCATAAATTCGGGA 58.443 47.619 0.00 0.00 38.63 5.14
285 286 2.287915 CAGGGCCGTCTTCATAAATTCG 59.712 50.000 0.00 0.00 0.00 3.34
330 331 2.604046 TCGAATAGGAAGCTTGGAGC 57.396 50.000 2.10 0.00 42.84 4.70
356 357 7.468496 TCAAATGATTGAAAATCCCCCATTTT 58.532 30.769 0.00 0.00 45.76 1.82
545 1138 1.443194 GTCGCGCTTGGTTCGACTA 60.443 57.895 5.56 0.00 46.21 2.59
604 1197 0.171231 GAATCCTGGCCGTTGCTTTC 59.829 55.000 0.00 0.00 37.74 2.62
608 1201 3.140814 GGGAATCCTGGCCGTTGC 61.141 66.667 0.00 0.00 0.00 4.17
618 1211 2.511403 GAGGGCTTCGGGGAATCC 59.489 66.667 0.00 0.00 0.00 3.01
643 1236 4.218686 GCTTGGTGGTGGGGTGGT 62.219 66.667 0.00 0.00 0.00 4.16
650 1243 1.302832 GTGGAGAGGCTTGGTGGTG 60.303 63.158 0.00 0.00 0.00 4.17
651 1244 2.529744 GGTGGAGAGGCTTGGTGGT 61.530 63.158 0.00 0.00 0.00 4.16
652 1245 2.352805 GGTGGAGAGGCTTGGTGG 59.647 66.667 0.00 0.00 0.00 4.61
653 1246 1.302832 GTGGTGGAGAGGCTTGGTG 60.303 63.158 0.00 0.00 0.00 4.17
654 1247 2.883828 CGTGGTGGAGAGGCTTGGT 61.884 63.158 0.00 0.00 0.00 3.67
726 1329 0.968901 TATATAGACAGGGGCGGGCG 60.969 60.000 0.00 0.00 0.00 6.13
727 1330 1.497161 ATATATAGACAGGGGCGGGC 58.503 55.000 0.00 0.00 0.00 6.13
728 1331 2.621998 CGTATATATAGACAGGGGCGGG 59.378 54.545 8.18 0.00 0.00 6.13
729 1332 2.034305 GCGTATATATAGACAGGGGCGG 59.966 54.545 8.18 0.00 0.00 6.13
730 1333 2.034305 GGCGTATATATAGACAGGGGCG 59.966 54.545 8.18 0.00 0.00 6.13
731 1334 3.028850 TGGCGTATATATAGACAGGGGC 58.971 50.000 8.18 4.79 0.00 5.80
732 1335 5.221461 GGAATGGCGTATATATAGACAGGGG 60.221 48.000 8.18 0.00 0.00 4.79
733 1336 5.362717 TGGAATGGCGTATATATAGACAGGG 59.637 44.000 8.18 0.00 0.00 4.45
734 1337 6.273825 GTGGAATGGCGTATATATAGACAGG 58.726 44.000 8.18 0.00 0.00 4.00
735 1338 6.273825 GGTGGAATGGCGTATATATAGACAG 58.726 44.000 8.18 2.48 0.00 3.51
736 1339 5.163591 CGGTGGAATGGCGTATATATAGACA 60.164 44.000 8.18 0.08 0.00 3.41
1320 1938 4.024048 CACCAACGCCAACATTAGATATCC 60.024 45.833 0.00 0.00 0.00 2.59
1338 1956 1.777030 CGCAACAGTAACGCCACCAA 61.777 55.000 0.00 0.00 0.00 3.67
1342 1960 0.531090 AGAACGCAACAGTAACGCCA 60.531 50.000 0.00 0.00 0.00 5.69
1362 1988 9.624697 CAACAAATACTTAAGAGCAGCAAAATA 57.375 29.630 10.09 0.00 0.00 1.40
1466 2211 4.159557 TCAGCCCTGTCTGCACATATATA 58.840 43.478 0.00 0.00 34.19 0.86
1467 2212 2.974794 TCAGCCCTGTCTGCACATATAT 59.025 45.455 0.00 0.00 34.19 0.86
1619 2401 7.860373 GCATTTCTCTATGTAACACAACAAACA 59.140 33.333 0.00 0.00 32.02 2.83
1720 2503 9.353999 GTCAGCCTTTTTGTATTACAATAAAGG 57.646 33.333 30.25 30.25 45.74 3.11
1850 2633 7.538678 GCAAAACCAGTAATTCTATCAACTGTG 59.461 37.037 3.73 0.00 38.10 3.66
1948 2746 7.493320 AGTCAGTCGATAAGTCAGAACTAGTAG 59.507 40.741 0.00 0.00 33.48 2.57
2002 2800 4.458397 ACATGTTGGGCTAGATCATTCTG 58.542 43.478 0.00 0.00 33.17 3.02
2096 2895 3.619733 CGGACATCTCAGGTTTGATTCCA 60.620 47.826 0.00 0.00 31.68 3.53
2123 2922 3.566261 GCTACATGCAGCGTGTGT 58.434 55.556 27.61 15.31 42.31 3.72
2144 2943 1.143305 GTGCTGCATACCATAGCTCG 58.857 55.000 5.27 0.00 38.25 5.03
2145 2944 1.517242 GGTGCTGCATACCATAGCTC 58.483 55.000 5.27 1.15 38.12 4.09
2146 2945 0.250038 CGGTGCTGCATACCATAGCT 60.250 55.000 17.45 0.00 38.11 3.32
2147 2946 1.230635 CCGGTGCTGCATACCATAGC 61.231 60.000 17.45 3.31 38.11 2.97
2148 2947 0.106708 ACCGGTGCTGCATACCATAG 59.893 55.000 6.12 9.57 38.11 2.23
2149 2948 1.415200 TACCGGTGCTGCATACCATA 58.585 50.000 19.93 8.44 38.11 2.74
2150 2949 0.544223 TTACCGGTGCTGCATACCAT 59.456 50.000 19.93 9.23 38.11 3.55
2151 2950 0.391927 GTTACCGGTGCTGCATACCA 60.392 55.000 19.93 0.00 38.11 3.25
2152 2951 0.391927 TGTTACCGGTGCTGCATACC 60.392 55.000 19.93 9.62 34.81 2.73
2153 2952 1.006832 CTGTTACCGGTGCTGCATAC 58.993 55.000 19.93 0.99 0.00 2.39
2154 2953 0.107897 CCTGTTACCGGTGCTGCATA 60.108 55.000 19.93 0.00 0.00 3.14
2155 2954 1.377202 CCTGTTACCGGTGCTGCAT 60.377 57.895 19.93 0.00 0.00 3.96
2156 2955 2.031919 CCTGTTACCGGTGCTGCA 59.968 61.111 19.93 9.57 0.00 4.41
2157 2956 2.033194 GTCCTGTTACCGGTGCTGC 61.033 63.158 19.93 4.93 0.00 5.25
2158 2957 0.250124 TTGTCCTGTTACCGGTGCTG 60.250 55.000 19.93 13.51 0.00 4.41
2159 2958 0.470766 TTTGTCCTGTTACCGGTGCT 59.529 50.000 19.93 0.00 0.00 4.40
2160 2959 1.310904 TTTTGTCCTGTTACCGGTGC 58.689 50.000 19.93 10.88 0.00 5.01
2161 2960 2.033675 GGTTTTTGTCCTGTTACCGGTG 59.966 50.000 19.93 0.00 0.00 4.94
2162 2961 2.300433 GGTTTTTGTCCTGTTACCGGT 58.700 47.619 13.98 13.98 0.00 5.28
2163 2962 2.299521 TGGTTTTTGTCCTGTTACCGG 58.700 47.619 0.00 0.00 0.00 5.28
2164 2963 4.277423 AGATTGGTTTTTGTCCTGTTACCG 59.723 41.667 0.00 0.00 0.00 4.02
2165 2964 5.300792 TCAGATTGGTTTTTGTCCTGTTACC 59.699 40.000 0.00 0.00 0.00 2.85
2166 2965 6.039382 ACTCAGATTGGTTTTTGTCCTGTTAC 59.961 38.462 0.00 0.00 0.00 2.50
2167 2966 6.126409 ACTCAGATTGGTTTTTGTCCTGTTA 58.874 36.000 0.00 0.00 0.00 2.41
2168 2967 4.956075 ACTCAGATTGGTTTTTGTCCTGTT 59.044 37.500 0.00 0.00 0.00 3.16
2169 2968 4.536765 ACTCAGATTGGTTTTTGTCCTGT 58.463 39.130 0.00 0.00 0.00 4.00
2170 2969 5.048713 GGTACTCAGATTGGTTTTTGTCCTG 60.049 44.000 0.00 0.00 0.00 3.86
2171 2970 5.070685 GGTACTCAGATTGGTTTTTGTCCT 58.929 41.667 0.00 0.00 0.00 3.85
2172 2971 4.217767 GGGTACTCAGATTGGTTTTTGTCC 59.782 45.833 0.00 0.00 0.00 4.02
2173 2972 5.048713 CAGGGTACTCAGATTGGTTTTTGTC 60.049 44.000 0.00 0.00 0.00 3.18
2174 2973 4.827284 CAGGGTACTCAGATTGGTTTTTGT 59.173 41.667 0.00 0.00 0.00 2.83
2175 2974 4.218417 CCAGGGTACTCAGATTGGTTTTTG 59.782 45.833 0.00 0.00 0.00 2.44
2176 2975 4.141018 ACCAGGGTACTCAGATTGGTTTTT 60.141 41.667 0.00 0.00 35.50 1.94
2177 2976 3.397955 ACCAGGGTACTCAGATTGGTTTT 59.602 43.478 0.00 0.00 35.50 2.43
2178 2977 2.986728 ACCAGGGTACTCAGATTGGTTT 59.013 45.455 0.00 0.00 35.50 3.27
2179 2978 2.632537 ACCAGGGTACTCAGATTGGTT 58.367 47.619 0.00 0.00 35.50 3.67
2180 2979 2.344093 ACCAGGGTACTCAGATTGGT 57.656 50.000 0.00 0.00 34.26 3.67
2181 2980 3.009033 TCAAACCAGGGTACTCAGATTGG 59.991 47.826 0.00 0.00 0.00 3.16
2245 3044 1.425066 TCCAGGAGGTCTTGTGCATTT 59.575 47.619 0.00 0.00 35.89 2.32
2330 3194 2.752358 CTGGGCTGAACAGGAGCA 59.248 61.111 3.99 0.00 38.27 4.26
2368 3232 6.401796 CGTCTTATAAAAACAAACGGAGGGAG 60.402 42.308 0.00 0.00 0.00 4.30
2371 3235 6.232139 ACGTCTTATAAAAACAAACGGAGG 57.768 37.500 0.00 0.00 33.26 4.30
2372 3236 7.851963 TGAAACGTCTTATAAAAACAAACGGAG 59.148 33.333 0.00 0.00 33.26 4.63
2374 3238 7.851963 TCTGAAACGTCTTATAAAAACAAACGG 59.148 33.333 0.00 0.00 33.26 4.44
2386 3250 3.433615 GCAAGCTGTCTGAAACGTCTTAT 59.566 43.478 0.00 0.00 0.00 1.73
2388 3252 1.599542 GCAAGCTGTCTGAAACGTCTT 59.400 47.619 0.00 0.00 0.00 3.01
2389 3253 1.202580 AGCAAGCTGTCTGAAACGTCT 60.203 47.619 0.00 0.00 0.00 4.18
2391 3255 1.668419 AAGCAAGCTGTCTGAAACGT 58.332 45.000 0.00 0.00 0.00 3.99
2392 3256 2.223340 ACAAAGCAAGCTGTCTGAAACG 60.223 45.455 0.00 0.00 0.00 3.60
2395 3259 3.561310 CAGTACAAAGCAAGCTGTCTGAA 59.439 43.478 0.00 0.00 0.00 3.02
2397 3263 2.874701 ACAGTACAAAGCAAGCTGTCTG 59.125 45.455 0.00 0.00 35.78 3.51
2398 3264 3.199880 ACAGTACAAAGCAAGCTGTCT 57.800 42.857 0.00 0.00 35.78 3.41
2399 3265 3.971032 AACAGTACAAAGCAAGCTGTC 57.029 42.857 0.00 0.00 39.19 3.51
2400 3266 4.718940 AAAACAGTACAAAGCAAGCTGT 57.281 36.364 0.00 0.00 41.51 4.40
2401 3267 5.909610 GTCTAAAACAGTACAAAGCAAGCTG 59.090 40.000 0.00 0.00 0.00 4.24
2402 3268 5.588648 TGTCTAAAACAGTACAAAGCAAGCT 59.411 36.000 0.00 0.00 32.81 3.74
2416 3282 6.582636 AGACATTCAGACACTGTCTAAAACA 58.417 36.000 11.47 0.00 45.79 2.83
2421 3287 6.861572 CGTTTTAGACATTCAGACACTGTCTA 59.138 38.462 11.47 7.38 45.79 2.59
2423 3289 5.462398 ACGTTTTAGACATTCAGACACTGTC 59.538 40.000 0.38 0.38 39.63 3.51
2424 3290 5.357257 ACGTTTTAGACATTCAGACACTGT 58.643 37.500 0.00 0.00 32.61 3.55
2425 3291 5.692204 AGACGTTTTAGACATTCAGACACTG 59.308 40.000 0.00 0.00 0.00 3.66
2426 3292 5.844004 AGACGTTTTAGACATTCAGACACT 58.156 37.500 0.00 0.00 0.00 3.55
2427 3293 6.526566 AAGACGTTTTAGACATTCAGACAC 57.473 37.500 0.00 0.00 0.00 3.67
2441 3307 8.557029 CCTCTGTTCACTTTTATAAGACGTTTT 58.443 33.333 0.00 0.00 35.30 2.43
2442 3308 7.713942 ACCTCTGTTCACTTTTATAAGACGTTT 59.286 33.333 0.00 0.00 35.30 3.60
2443 3309 7.215085 ACCTCTGTTCACTTTTATAAGACGTT 58.785 34.615 0.00 0.00 35.30 3.99
2444 3310 6.756221 ACCTCTGTTCACTTTTATAAGACGT 58.244 36.000 0.00 0.00 35.30 4.34
2445 3311 8.027771 ACTACCTCTGTTCACTTTTATAAGACG 58.972 37.037 0.00 0.00 35.30 4.18
2448 3314 9.303537 GCTACTACCTCTGTTCACTTTTATAAG 57.696 37.037 0.00 0.00 37.40 1.73
2450 3316 8.357290 TGCTACTACCTCTGTTCACTTTTATA 57.643 34.615 0.00 0.00 0.00 0.98
2451 3317 7.241042 TGCTACTACCTCTGTTCACTTTTAT 57.759 36.000 0.00 0.00 0.00 1.40
2453 3319 5.546621 TGCTACTACCTCTGTTCACTTTT 57.453 39.130 0.00 0.00 0.00 2.27
2454 3320 5.746990 ATGCTACTACCTCTGTTCACTTT 57.253 39.130 0.00 0.00 0.00 2.66
2455 3321 5.746990 AATGCTACTACCTCTGTTCACTT 57.253 39.130 0.00 0.00 0.00 3.16
2457 3323 5.062308 CGAAAATGCTACTACCTCTGTTCAC 59.938 44.000 0.00 0.00 0.00 3.18
2458 3324 5.168569 CGAAAATGCTACTACCTCTGTTCA 58.831 41.667 0.00 0.00 0.00 3.18
2459 3325 5.062308 CACGAAAATGCTACTACCTCTGTTC 59.938 44.000 0.00 0.00 0.00 3.18
2460 3326 4.929808 CACGAAAATGCTACTACCTCTGTT 59.070 41.667 0.00 0.00 0.00 3.16
2463 3329 4.463186 AGACACGAAAATGCTACTACCTCT 59.537 41.667 0.00 0.00 0.00 3.69
2465 3331 4.803098 AGACACGAAAATGCTACTACCT 57.197 40.909 0.00 0.00 0.00 3.08
2467 3333 7.399523 CCAATTAGACACGAAAATGCTACTAC 58.600 38.462 0.00 0.00 0.00 2.73
2468 3334 6.537301 CCCAATTAGACACGAAAATGCTACTA 59.463 38.462 0.00 0.00 0.00 1.82
2469 3335 5.354234 CCCAATTAGACACGAAAATGCTACT 59.646 40.000 0.00 0.00 0.00 2.57
2470 3336 5.569413 CCCAATTAGACACGAAAATGCTAC 58.431 41.667 0.00 0.00 0.00 3.58
2471 3337 4.095782 GCCCAATTAGACACGAAAATGCTA 59.904 41.667 0.00 0.00 0.00 3.49
2472 3338 3.119495 GCCCAATTAGACACGAAAATGCT 60.119 43.478 0.00 0.00 0.00 3.79
2481 3347 6.546034 ACCATATTACTTGCCCAATTAGACAC 59.454 38.462 0.00 0.00 0.00 3.67
2605 3478 9.223099 CAGGAAAAAGGAAAATAATTGCTCATT 57.777 29.630 0.00 0.00 0.00 2.57
2623 3496 2.252976 GCATGGGCAAACAGGAAAAA 57.747 45.000 0.00 0.00 40.72 1.94
2880 3766 3.070429 AGTTCTTGCAGCTTTTCAACG 57.930 42.857 0.00 0.00 0.00 4.10
2930 3816 4.039366 GGTGTTCAGTAGTCAGTTCTTCCT 59.961 45.833 0.00 0.00 0.00 3.36
3082 3968 8.685838 TTAGCTTAAACACATAATACCATCCC 57.314 34.615 0.00 0.00 0.00 3.85
3117 4004 5.605327 CGCGAATTTACTTATTACCATCCG 58.395 41.667 0.00 0.00 0.00 4.18
3136 4023 3.272766 CAGAATATGGTCTGCGCGA 57.727 52.632 12.10 0.00 38.74 5.87
3142 4029 6.124340 TGACATCAAATGCAGAATATGGTCT 58.876 36.000 0.00 0.00 0.00 3.85
3176 4063 6.421202 GCACTATTAGGAGGAACAATTACTCG 59.579 42.308 0.00 0.00 32.11 4.18
3179 4066 6.354130 TGGCACTATTAGGAGGAACAATTAC 58.646 40.000 0.00 0.00 0.00 1.89
3180 4067 6.569127 TGGCACTATTAGGAGGAACAATTA 57.431 37.500 0.00 0.00 0.00 1.40
3181 4068 5.450818 TGGCACTATTAGGAGGAACAATT 57.549 39.130 0.00 0.00 0.00 2.32
3182 4069 5.450818 TTGGCACTATTAGGAGGAACAAT 57.549 39.130 0.00 0.00 0.00 2.71
3183 4070 4.919774 TTGGCACTATTAGGAGGAACAA 57.080 40.909 0.00 0.00 0.00 2.83
3184 4071 4.288626 AGTTTGGCACTATTAGGAGGAACA 59.711 41.667 0.00 0.00 31.97 3.18
3373 4262 8.718102 TTAGTTATTCACATTAGCTTCAGTCC 57.282 34.615 0.00 0.00 0.00 3.85
3395 4284 7.928167 TGATGATGACCAACTATGTAGCTTTAG 59.072 37.037 0.00 0.00 0.00 1.85
3494 4383 4.627467 GGTCAGCATATACGCATTAAGGAG 59.373 45.833 0.00 0.00 0.00 3.69
3500 4389 2.135139 CACGGTCAGCATATACGCATT 58.865 47.619 0.00 0.00 0.00 3.56
3501 4390 1.783284 CACGGTCAGCATATACGCAT 58.217 50.000 0.00 0.00 0.00 4.73
3516 4405 0.734889 CCTGCAAATAAGAGGCACGG 59.265 55.000 0.00 0.00 33.34 4.94
3570 4459 9.916397 CTACGACAGTAATCATTAAATTCAACC 57.084 33.333 0.00 0.00 31.59 3.77
3654 4543 4.223144 ACTTAGGCCCAAAGTCACAAAAT 58.777 39.130 13.96 0.00 31.56 1.82
3813 4702 1.077828 TCTGTCATCCCACTGACCTCT 59.922 52.381 2.08 0.00 43.99 3.69
4002 4891 4.731313 ATCACTCAAAAGGAAGTTCCCT 57.269 40.909 18.65 2.08 37.19 4.20
4164 5053 3.374988 TCTTGTAATCAATTGCAGCCTCG 59.625 43.478 0.00 0.00 34.01 4.63
4317 5206 2.283529 ACAGACCTGGTACTGCGGG 61.284 63.158 19.55 0.00 37.61 6.13
4876 6058 3.320626 CATGTCCATGTACATCCTAGCG 58.679 50.000 5.07 0.00 38.01 4.26
5436 6636 8.298854 CAAAAGAAACCAGATGTTATGACATGA 58.701 33.333 8.00 0.00 46.27 3.07
5506 6713 4.730657 CAGCATCTTCAGGAAATGTGAAC 58.269 43.478 0.00 0.00 30.69 3.18
5557 6764 1.498176 AAGGGAAACGCTTAGGGGCT 61.498 55.000 0.55 0.00 34.91 5.19
5794 7032 1.086067 CAGCGGCATCGTCAACTGAT 61.086 55.000 1.45 0.00 38.89 2.90
5809 7047 5.445540 GGTTAAAAGGTCTTCGATAACAGCG 60.446 44.000 4.30 0.00 0.00 5.18
5884 7122 5.302357 GGCTAACCTTCTCAAACTGAATG 57.698 43.478 0.00 0.00 0.00 2.67
5979 7228 6.308675 TGTTTGTTTTCTAGTGTGAAACGAC 58.691 36.000 0.00 2.70 42.39 4.34
6075 7324 9.118236 GTAACTCAATGCATAACAGAAAGAAAC 57.882 33.333 0.00 0.00 0.00 2.78
6227 10822 2.119495 TGGAAGGATAAGTGGAGAGGC 58.881 52.381 0.00 0.00 0.00 4.70
6307 10902 3.753272 ACACAGGCAATCACAGTATTGAC 59.247 43.478 0.91 0.00 43.97 3.18
6640 11252 5.381174 TGATTCTTCCTGCAATGAACTTG 57.619 39.130 0.00 0.00 37.94 3.16
7093 11764 3.812156 ATATCAATGTCGTTCCCGTCA 57.188 42.857 0.00 0.00 36.61 4.35
7184 11855 5.885465 ACATCTCTCCACAGGAATTCTTTT 58.115 37.500 5.23 0.00 0.00 2.27
7215 11886 5.245526 AGCCGACTAAGAAGAGTTTAGGAAA 59.754 40.000 0.00 0.00 33.43 3.13
7318 12001 4.024218 GCAAATAGTTGGCATGCAACAAAA 60.024 37.500 24.86 15.17 37.00 2.44
7422 12110 6.763135 ACAACTGAACTACCATATGCATGTAG 59.237 38.462 16.97 16.97 0.00 2.74
7505 12194 7.458409 AATGCATAATGGGATAACTAGCAAG 57.542 36.000 0.00 0.00 32.83 4.01
7506 12195 7.287466 ACAAATGCATAATGGGATAACTAGCAA 59.713 33.333 14.76 0.00 32.83 3.91
7507 12196 6.777091 ACAAATGCATAATGGGATAACTAGCA 59.223 34.615 14.76 0.00 0.00 3.49
7568 12257 6.041751 ACCCTAACCTATCTATGCACAACTAC 59.958 42.308 0.00 0.00 0.00 2.73
7570 12259 4.969359 ACCCTAACCTATCTATGCACAACT 59.031 41.667 0.00 0.00 0.00 3.16
7634 12325 5.386958 TTGTAGAGATGCTCTAAACACGT 57.613 39.130 5.79 0.00 43.53 4.49
7656 12347 8.817876 GGTATAATTTATCCTCCTCTAGCTGTT 58.182 37.037 0.00 0.00 0.00 3.16
7657 12348 7.400627 GGGTATAATTTATCCTCCTCTAGCTGT 59.599 40.741 0.00 0.00 0.00 4.40
7658 12349 7.147637 GGGGTATAATTTATCCTCCTCTAGCTG 60.148 44.444 0.00 0.00 0.00 4.24
7660 12351 6.904093 AGGGGTATAATTTATCCTCCTCTAGC 59.096 42.308 0.00 0.00 0.00 3.42
7661 12352 7.285858 CGAGGGGTATAATTTATCCTCCTCTAG 59.714 44.444 19.94 11.08 37.95 2.43
7662 12353 7.124052 CGAGGGGTATAATTTATCCTCCTCTA 58.876 42.308 19.94 0.00 37.95 2.43
7663 12354 5.958987 CGAGGGGTATAATTTATCCTCCTCT 59.041 44.000 19.94 13.51 37.95 3.69
7664 12355 5.128991 CCGAGGGGTATAATTTATCCTCCTC 59.871 48.000 14.91 14.91 37.95 3.71
7666 12357 4.383880 GCCGAGGGGTATAATTTATCCTCC 60.384 50.000 13.23 4.10 37.95 4.30
7692 12390 2.230660 GGGGAGTTGACCTCACTTTTG 58.769 52.381 0.00 0.00 43.66 2.44
7693 12391 1.145119 GGGGGAGTTGACCTCACTTTT 59.855 52.381 0.00 0.00 43.66 2.27
7707 12405 2.814097 CGGGCAAGTATATTTGGGGGAG 60.814 54.545 9.71 0.00 0.00 4.30
7710 12408 1.133606 ACCGGGCAAGTATATTTGGGG 60.134 52.381 6.32 0.00 0.00 4.96
7736 12693 2.228103 GGGAGCAAAACTTTTACTCCGG 59.772 50.000 20.49 0.00 41.24 5.14
7737 12694 2.228103 GGGGAGCAAAACTTTTACTCCG 59.772 50.000 20.49 0.00 41.24 4.63
7754 12711 2.678934 CGAACGGGAGACAGGGGA 60.679 66.667 0.00 0.00 0.00 4.81
7760 12718 2.126031 GCCACTCGAACGGGAGAC 60.126 66.667 0.00 0.00 37.49 3.36
7792 12750 4.504864 CCTCTCCATTACGGCCAATATCAA 60.505 45.833 2.24 0.00 33.14 2.57
7793 12751 3.007940 CCTCTCCATTACGGCCAATATCA 59.992 47.826 2.24 0.00 33.14 2.15
7797 12755 0.179018 GCCTCTCCATTACGGCCAAT 60.179 55.000 2.24 0.00 36.56 3.16
7798 12756 1.223487 GCCTCTCCATTACGGCCAA 59.777 57.895 2.24 0.00 36.56 4.52
7864 12822 3.546714 AAGCAGGGGTCGTTTCCGG 62.547 63.158 0.00 0.00 33.95 5.14
7925 12887 1.304052 GGTTGGCTATGTGGTGGCA 60.304 57.895 0.00 0.00 35.74 4.92
7967 12929 4.821589 GGAGACGAGCGGCCTTGG 62.822 72.222 0.00 0.00 0.00 3.61
8002 12976 2.668212 CGACCAAAGCAGCGGGAA 60.668 61.111 7.68 0.00 0.00 3.97
8049 13023 2.659016 CACCTCCTCAGCGAGCAA 59.341 61.111 0.00 0.00 0.00 3.91
8057 13031 2.251818 CTCTTCTTCACCACCTCCTCA 58.748 52.381 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.