Multiple sequence alignment - TraesCS4B01G191600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G191600 chr4B 100.000 3278 0 0 1 3278 413876942 413873665 0.000000e+00 6054.0
1 TraesCS4B01G191600 chr4B 94.483 145 8 0 412 556 499851925 499851781 1.180000e-54 224.0
2 TraesCS4B01G191600 chr4D 92.448 2410 82 31 626 3011 335899355 335897022 0.000000e+00 3350.0
3 TraesCS4B01G191600 chr4D 93.836 146 9 0 417 562 87747775 87747630 1.530000e-53 220.0
4 TraesCS4B01G191600 chr4D 88.415 164 18 1 1 164 335900775 335900613 2.580000e-46 196.0
5 TraesCS4B01G191600 chr4A 95.930 1892 56 11 578 2464 137164016 137165891 0.000000e+00 3048.0
6 TraesCS4B01G191600 chr4A 83.669 496 28 14 2538 3016 137165927 137166386 5.060000e-113 418.0
7 TraesCS4B01G191600 chr4A 93.289 149 9 1 415 563 731498603 731498456 5.510000e-53 219.0
8 TraesCS4B01G191600 chr4A 86.047 172 19 4 1 170 137162615 137162783 2.600000e-41 180.0
9 TraesCS4B01G191600 chr2D 93.377 151 9 1 413 563 72591241 72591390 4.260000e-54 222.0
10 TraesCS4B01G191600 chr2D 80.124 161 27 3 198 353 97618481 97618321 7.430000e-22 115.0
11 TraesCS4B01G191600 chr5B 94.406 143 8 0 414 556 461147130 461147272 1.530000e-53 220.0
12 TraesCS4B01G191600 chr3A 95.000 140 7 0 417 556 431819372 431819511 1.530000e-53 220.0
13 TraesCS4B01G191600 chr3A 78.505 107 21 2 288 394 708489068 708488964 5.870000e-08 69.4
14 TraesCS4B01G191600 chr2B 92.258 155 11 1 409 563 631438230 631438383 5.510000e-53 219.0
15 TraesCS4B01G191600 chr1D 92.715 151 10 1 417 566 471403571 471403421 1.980000e-52 217.0
16 TraesCS4B01G191600 chr6A 91.083 157 11 3 410 564 186507123 186507278 3.310000e-50 209.0
17 TraesCS4B01G191600 chr6A 78.431 153 25 6 216 361 520847915 520848066 3.480000e-15 93.5
18 TraesCS4B01G191600 chr7D 92.000 125 9 1 3069 3193 437001302 437001425 1.210000e-39 174.0
19 TraesCS4B01G191600 chr6B 80.973 226 36 5 198 416 615633916 615634141 4.350000e-39 172.0
20 TraesCS4B01G191600 chr7B 90.400 125 8 1 3069 3193 453938372 453938492 9.410000e-36 161.0
21 TraesCS4B01G191600 chr1B 77.333 225 38 8 198 410 110475609 110475386 1.600000e-23 121.0
22 TraesCS4B01G191600 chr1B 92.308 39 3 0 322 360 6025271 6025233 4.570000e-04 56.5
23 TraesCS4B01G191600 chr3D 80.714 140 19 6 221 354 246907063 246907200 5.790000e-18 102.0
24 TraesCS4B01G191600 chr6D 81.148 122 18 3 243 360 89736813 89736693 3.480000e-15 93.5
25 TraesCS4B01G191600 chr2A 89.362 47 5 0 333 379 419027109 419027155 3.530000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G191600 chr4B 413873665 413876942 3277 True 6054.000000 6054 100.000000 1 3278 1 chr4B.!!$R1 3277
1 TraesCS4B01G191600 chr4D 335897022 335900775 3753 True 1773.000000 3350 90.431500 1 3011 2 chr4D.!!$R2 3010
2 TraesCS4B01G191600 chr4A 137162615 137166386 3771 False 1215.333333 3048 88.548667 1 3016 3 chr4A.!!$F1 3015

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 1953 0.030603 GGAGAGGATTGGAGGGGTCT 60.031 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2384 4193 0.60762 ATTCCACCCACGCAAAATGG 59.392 50.0 0.0 0.0 36.94 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.214367 GGTTATATGTGCGGTCCGTG 58.786 55.000 13.94 0.00 0.00 4.94
137 138 1.134367 CGCGTCTGTCCCTCTTCATAA 59.866 52.381 0.00 0.00 0.00 1.90
139 140 2.166664 GCGTCTGTCCCTCTTCATAACT 59.833 50.000 0.00 0.00 0.00 2.24
144 145 1.840635 GTCCCTCTTCATAACTGCCCT 59.159 52.381 0.00 0.00 0.00 5.19
150 151 5.544176 CCCTCTTCATAACTGCCCTAGATTA 59.456 44.000 0.00 0.00 0.00 1.75
171 172 1.029681 GGTTGGGTTTGAGTGGTGTC 58.970 55.000 0.00 0.00 0.00 3.67
173 174 0.464735 TTGGGTTTGAGTGGTGTCGG 60.465 55.000 0.00 0.00 0.00 4.79
177 178 1.227823 TTTGAGTGGTGTCGGCCAG 60.228 57.895 2.24 0.00 39.53 4.85
178 179 1.691195 TTTGAGTGGTGTCGGCCAGA 61.691 55.000 2.24 0.00 39.53 3.86
208 269 4.651778 AGCCCATATTTAAGCGCTCATAA 58.348 39.130 12.06 3.39 0.00 1.90
210 271 5.711976 AGCCCATATTTAAGCGCTCATAATT 59.288 36.000 12.06 5.95 0.00 1.40
212 273 6.250819 CCCATATTTAAGCGCTCATAATTCG 58.749 40.000 12.06 5.60 0.00 3.34
236 1244 5.163343 GCTCATACACTAACCCCTATGAACA 60.163 44.000 0.00 0.00 0.00 3.18
237 1245 6.631766 GCTCATACACTAACCCCTATGAACAA 60.632 42.308 0.00 0.00 0.00 2.83
241 1249 5.697067 ACACTAACCCCTATGAACAAACAA 58.303 37.500 0.00 0.00 0.00 2.83
258 1266 0.988832 CAAGCACACCCTACCCCTAA 59.011 55.000 0.00 0.00 0.00 2.69
265 1273 0.416231 ACCCTACCCCTAAGAGCACA 59.584 55.000 0.00 0.00 0.00 4.57
275 1283 3.320541 CCCTAAGAGCACATTCGAGAGAT 59.679 47.826 0.00 0.00 41.60 2.75
277 1285 5.355596 CCTAAGAGCACATTCGAGAGATTT 58.644 41.667 0.00 0.00 41.60 2.17
283 1291 2.797156 CACATTCGAGAGATTTAGCCGG 59.203 50.000 0.00 0.00 41.60 6.13
289 1297 3.119459 TCGAGAGATTTAGCCGGCATATC 60.119 47.826 31.54 25.17 33.31 1.63
297 1305 5.738619 TTTAGCCGGCATATCTTGAGATA 57.261 39.130 31.54 4.10 40.85 1.98
305 1313 5.457148 CGGCATATCTTGAGATATACGAAGC 59.543 44.000 20.80 15.61 43.72 3.86
315 1323 7.888250 TGAGATATACGAAGCCATCATAGAT 57.112 36.000 0.00 0.00 0.00 1.98
321 1329 2.344950 GAAGCCATCATAGATGCCTCG 58.655 52.381 1.52 0.00 0.00 4.63
347 1355 2.035632 GACGAGAATGTCTCCTCCCAT 58.964 52.381 0.00 0.00 40.34 4.00
354 1362 1.348064 TGTCTCCTCCCATTGAACGT 58.652 50.000 0.00 0.00 0.00 3.99
417 1428 3.763360 TGCACCATGATTTAAACCCTGAG 59.237 43.478 0.00 0.00 0.00 3.35
418 1429 3.131046 GCACCATGATTTAAACCCTGAGG 59.869 47.826 0.00 0.00 40.04 3.86
419 1430 3.131046 CACCATGATTTAAACCCTGAGGC 59.869 47.826 0.00 0.00 36.11 4.70
424 1435 4.415596 TGATTTAAACCCTGAGGCATTGT 58.584 39.130 0.00 0.00 36.11 2.71
425 1436 4.837860 TGATTTAAACCCTGAGGCATTGTT 59.162 37.500 0.00 0.00 36.11 2.83
426 1437 4.864704 TTTAAACCCTGAGGCATTGTTC 57.135 40.909 0.00 0.00 36.11 3.18
427 1438 1.247567 AAACCCTGAGGCATTGTTCG 58.752 50.000 0.00 0.00 36.11 3.95
428 1439 0.609131 AACCCTGAGGCATTGTTCGG 60.609 55.000 0.00 0.00 36.11 4.30
431 1442 1.339631 CCCTGAGGCATTGTTCGGTTA 60.340 52.381 0.00 0.00 0.00 2.85
437 1448 1.407618 GGCATTGTTCGGTTAATCCCC 59.592 52.381 0.00 0.00 0.00 4.81
438 1449 2.096248 GCATTGTTCGGTTAATCCCCA 58.904 47.619 0.00 0.00 0.00 4.96
439 1450 2.159296 GCATTGTTCGGTTAATCCCCAC 60.159 50.000 0.00 0.00 0.00 4.61
440 1451 2.203470 TTGTTCGGTTAATCCCCACC 57.797 50.000 0.00 0.00 0.00 4.61
441 1452 1.065647 TGTTCGGTTAATCCCCACCA 58.934 50.000 0.00 0.00 31.84 4.17
442 1453 1.271488 TGTTCGGTTAATCCCCACCAC 60.271 52.381 0.00 0.00 31.84 4.16
443 1454 1.065647 TTCGGTTAATCCCCACCACA 58.934 50.000 0.00 0.00 31.84 4.17
447 1929 2.723273 GGTTAATCCCCACCACAAGAG 58.277 52.381 0.00 0.00 32.74 2.85
451 1933 1.686236 ATCCCCACCACAAGAGGATT 58.314 50.000 0.00 0.00 33.48 3.01
453 1935 0.323725 CCCCACCACAAGAGGATTGG 60.324 60.000 0.00 0.00 36.39 3.16
454 1936 0.698238 CCCACCACAAGAGGATTGGA 59.302 55.000 0.00 0.00 34.24 3.53
457 1939 2.355513 CCACCACAAGAGGATTGGAGAG 60.356 54.545 0.00 0.00 34.24 3.20
460 1942 2.776536 CCACAAGAGGATTGGAGAGGAT 59.223 50.000 0.00 0.00 31.39 3.24
463 1945 3.201708 ACAAGAGGATTGGAGAGGATTGG 59.798 47.826 0.00 0.00 0.00 3.16
464 1946 3.428063 AGAGGATTGGAGAGGATTGGA 57.572 47.619 0.00 0.00 0.00 3.53
467 1949 1.423161 GGATTGGAGAGGATTGGAGGG 59.577 57.143 0.00 0.00 0.00 4.30
468 1950 1.423161 GATTGGAGAGGATTGGAGGGG 59.577 57.143 0.00 0.00 0.00 4.79
470 1952 0.326618 TGGAGAGGATTGGAGGGGTC 60.327 60.000 0.00 0.00 0.00 4.46
471 1953 0.030603 GGAGAGGATTGGAGGGGTCT 60.031 60.000 0.00 0.00 0.00 3.85
473 1955 0.719015 AGAGGATTGGAGGGGTCTGA 59.281 55.000 0.00 0.00 0.00 3.27
475 1957 1.419387 GAGGATTGGAGGGGTCTGATG 59.581 57.143 0.00 0.00 0.00 3.07
478 1960 0.921896 ATTGGAGGGGTCTGATGTGG 59.078 55.000 0.00 0.00 0.00 4.17
480 1962 0.044702 TGGAGGGGTCTGATGTGGAT 59.955 55.000 0.00 0.00 0.00 3.41
485 1967 2.649312 AGGGGTCTGATGTGGATTTTGA 59.351 45.455 0.00 0.00 0.00 2.69
486 1968 2.755103 GGGGTCTGATGTGGATTTTGAC 59.245 50.000 0.00 0.00 0.00 3.18
487 1969 3.562176 GGGGTCTGATGTGGATTTTGACT 60.562 47.826 0.00 0.00 0.00 3.41
488 1970 4.082125 GGGTCTGATGTGGATTTTGACTT 58.918 43.478 0.00 0.00 0.00 3.01
489 1971 4.082571 GGGTCTGATGTGGATTTTGACTTG 60.083 45.833 0.00 0.00 0.00 3.16
491 1973 4.217118 GTCTGATGTGGATTTTGACTTGCT 59.783 41.667 0.00 0.00 0.00 3.91
492 1974 4.216902 TCTGATGTGGATTTTGACTTGCTG 59.783 41.667 0.00 0.00 0.00 4.41
493 1975 3.256383 TGATGTGGATTTTGACTTGCTGG 59.744 43.478 0.00 0.00 0.00 4.85
494 1976 1.962807 TGTGGATTTTGACTTGCTGGG 59.037 47.619 0.00 0.00 0.00 4.45
495 1977 1.273327 GTGGATTTTGACTTGCTGGGG 59.727 52.381 0.00 0.00 0.00 4.96
499 1981 3.261643 GGATTTTGACTTGCTGGGGATTT 59.738 43.478 0.00 0.00 0.00 2.17
501 1983 5.046663 GGATTTTGACTTGCTGGGGATTTAA 60.047 40.000 0.00 0.00 0.00 1.52
502 1984 6.352137 GGATTTTGACTTGCTGGGGATTTAAT 60.352 38.462 0.00 0.00 0.00 1.40
503 1985 5.659440 TTTGACTTGCTGGGGATTTAATC 57.341 39.130 0.00 0.00 0.00 1.75
515 1997 4.326504 GGATTTAATCCCTGCCAATGTG 57.673 45.455 12.74 0.00 43.88 3.21
517 1999 2.530460 TTAATCCCTGCCAATGTGCT 57.470 45.000 0.00 0.00 0.00 4.40
519 2001 0.685458 AATCCCTGCCAATGTGCTCC 60.685 55.000 0.00 0.00 0.00 4.70
523 2005 0.037975 CCTGCCAATGTGCTCCAAAC 60.038 55.000 0.00 0.00 0.00 2.93
524 2006 0.037975 CTGCCAATGTGCTCCAAACC 60.038 55.000 0.00 0.00 0.00 3.27
525 2007 1.293179 GCCAATGTGCTCCAAACCC 59.707 57.895 0.00 0.00 0.00 4.11
526 2008 1.974543 CCAATGTGCTCCAAACCCC 59.025 57.895 0.00 0.00 0.00 4.95
527 2009 0.542702 CCAATGTGCTCCAAACCCCT 60.543 55.000 0.00 0.00 0.00 4.79
529 2011 1.001181 CAATGTGCTCCAAACCCCTTG 59.999 52.381 0.00 0.00 34.52 3.61
530 2012 0.482446 ATGTGCTCCAAACCCCTTGA 59.518 50.000 0.00 0.00 37.17 3.02
531 2013 0.260230 TGTGCTCCAAACCCCTTGAA 59.740 50.000 0.00 0.00 37.17 2.69
532 2014 1.342474 TGTGCTCCAAACCCCTTGAAA 60.342 47.619 0.00 0.00 37.17 2.69
533 2015 1.068588 GTGCTCCAAACCCCTTGAAAC 59.931 52.381 0.00 0.00 37.17 2.78
534 2016 0.679505 GCTCCAAACCCCTTGAAACC 59.320 55.000 0.00 0.00 37.17 3.27
535 2017 1.338107 CTCCAAACCCCTTGAAACCC 58.662 55.000 0.00 0.00 37.17 4.11
536 2018 0.637195 TCCAAACCCCTTGAAACCCA 59.363 50.000 0.00 0.00 37.17 4.51
537 2019 1.047801 CCAAACCCCTTGAAACCCAG 58.952 55.000 0.00 0.00 37.17 4.45
538 2020 1.691163 CCAAACCCCTTGAAACCCAGT 60.691 52.381 0.00 0.00 37.17 4.00
539 2021 1.412343 CAAACCCCTTGAAACCCAGTG 59.588 52.381 0.00 0.00 37.17 3.66
540 2022 0.930726 AACCCCTTGAAACCCAGTGA 59.069 50.000 0.00 0.00 0.00 3.41
543 2025 1.686587 CCCCTTGAAACCCAGTGAAAC 59.313 52.381 0.00 0.00 0.00 2.78
544 2026 1.686587 CCCTTGAAACCCAGTGAAACC 59.313 52.381 0.00 0.00 37.80 3.27
546 2028 2.294074 CTTGAAACCCAGTGAAACCGA 58.706 47.619 0.00 0.00 37.80 4.69
548 2030 2.018515 TGAAACCCAGTGAAACCGAAC 58.981 47.619 0.00 0.00 37.80 3.95
549 2031 2.018515 GAAACCCAGTGAAACCGAACA 58.981 47.619 0.00 0.00 37.80 3.18
550 2032 2.131776 AACCCAGTGAAACCGAACAA 57.868 45.000 0.00 0.00 37.80 2.83
551 2033 1.675552 ACCCAGTGAAACCGAACAAG 58.324 50.000 0.00 0.00 37.80 3.16
552 2034 0.951558 CCCAGTGAAACCGAACAAGG 59.048 55.000 0.00 0.00 37.80 3.61
553 2035 0.310854 CCAGTGAAACCGAACAAGGC 59.689 55.000 0.00 0.00 37.80 4.35
554 2036 0.310854 CAGTGAAACCGAACAAGGCC 59.689 55.000 0.00 0.00 37.80 5.19
555 2037 0.182775 AGTGAAACCGAACAAGGCCT 59.817 50.000 0.00 0.00 37.80 5.19
556 2038 0.310854 GTGAAACCGAACAAGGCCTG 59.689 55.000 5.69 2.82 33.69 4.85
557 2039 0.181587 TGAAACCGAACAAGGCCTGA 59.818 50.000 5.69 0.00 33.69 3.86
558 2040 1.202879 TGAAACCGAACAAGGCCTGAT 60.203 47.619 5.69 0.00 33.69 2.90
559 2041 1.200020 GAAACCGAACAAGGCCTGATG 59.800 52.381 5.69 3.90 33.69 3.07
560 2042 0.609131 AACCGAACAAGGCCTGATGG 60.609 55.000 5.69 7.16 33.69 3.51
561 2043 1.750399 CCGAACAAGGCCTGATGGG 60.750 63.158 5.69 2.23 38.36 4.00
563 2045 0.107017 CGAACAAGGCCTGATGGGAT 60.107 55.000 5.69 0.00 37.23 3.85
564 2046 1.396653 GAACAAGGCCTGATGGGATG 58.603 55.000 5.69 0.14 37.23 3.51
565 2047 0.032813 AACAAGGCCTGATGGGATGG 60.033 55.000 5.69 0.00 37.23 3.51
566 2048 1.152610 CAAGGCCTGATGGGATGGG 60.153 63.158 5.69 0.00 37.23 4.00
567 2049 2.397902 AAGGCCTGATGGGATGGGG 61.398 63.158 5.69 0.00 37.23 4.96
568 2050 2.778278 GGCCTGATGGGATGGGGA 60.778 66.667 0.00 0.00 37.23 4.81
569 2051 2.165656 GGCCTGATGGGATGGGGAT 61.166 63.158 0.00 0.00 37.23 3.85
570 2052 0.846427 GGCCTGATGGGATGGGGATA 60.846 60.000 0.00 0.00 37.23 2.59
571 2053 0.329596 GCCTGATGGGATGGGGATAC 59.670 60.000 0.00 0.00 37.23 2.24
587 2359 3.637769 GGATACCACTCTTCTCCTGACT 58.362 50.000 0.00 0.00 0.00 3.41
589 2361 4.825085 GGATACCACTCTTCTCCTGACTAG 59.175 50.000 0.00 0.00 0.00 2.57
603 2375 3.005554 CTGACTAGCCAACCACTGATTG 58.994 50.000 0.00 0.00 0.00 2.67
613 2385 1.154413 CACTGATTGGTTCGTGCGC 60.154 57.895 0.00 0.00 0.00 6.09
684 2457 1.216064 CCTCCCCACATCAAGGATCA 58.784 55.000 0.00 0.00 0.00 2.92
925 2710 0.677731 CGCCATTGGTGACTGGTGAT 60.678 55.000 10.90 0.00 44.15 3.06
928 2713 1.283029 CCATTGGTGACTGGTGATCCT 59.717 52.381 0.00 0.00 34.23 3.24
929 2714 2.505407 CCATTGGTGACTGGTGATCCTA 59.495 50.000 0.00 0.00 34.23 2.94
938 2723 4.857251 GTGATCCTAAGCACCCCG 57.143 61.111 0.00 0.00 35.75 5.73
1423 3208 1.005037 TTCGATTGTGCGGTCTGCT 60.005 52.632 5.01 0.00 46.63 4.24
1773 3558 2.037136 CAAGTTCAGGAGCCAGGCG 61.037 63.158 5.55 0.00 0.00 5.52
1838 3644 2.203070 GCGGTGCTACTCCATGGG 60.203 66.667 13.02 5.22 0.00 4.00
1839 3645 2.505982 CGGTGCTACTCCATGGGG 59.494 66.667 11.11 11.11 0.00 4.96
1840 3646 2.063979 CGGTGCTACTCCATGGGGA 61.064 63.158 21.59 1.10 42.29 4.81
1841 3647 1.527370 GGTGCTACTCCATGGGGAC 59.473 63.158 21.59 10.35 38.64 4.46
1857 3663 3.644884 GGGACCTATGAGTACGTCATG 57.355 52.381 14.40 0.00 46.09 3.07
1858 3664 2.296471 GGGACCTATGAGTACGTCATGG 59.704 54.545 14.40 12.14 46.09 3.66
1987 3793 4.821589 GGCTGCGGAGGAAGGACG 62.822 72.222 5.93 0.00 0.00 4.79
2184 3990 1.004320 CGTGGATTGGGACGTGGAA 60.004 57.895 0.00 0.00 0.00 3.53
2287 4096 1.338579 GCCACCAGTGAGAAGAGAAGG 60.339 57.143 0.00 0.00 0.00 3.46
2384 4193 3.678072 TGTTCGATCCGTGAGATTTGAAC 59.322 43.478 11.63 11.63 43.74 3.18
2416 4225 1.756538 GGTGGAATGCAGGGTTAATGG 59.243 52.381 0.00 0.00 0.00 3.16
2423 4232 5.046950 GGAATGCAGGGTTAATGGTTTTACA 60.047 40.000 0.00 0.00 0.00 2.41
2430 4239 5.007682 GGGTTAATGGTTTTACAGCTCAGA 58.992 41.667 0.00 0.00 0.00 3.27
2431 4240 5.123979 GGGTTAATGGTTTTACAGCTCAGAG 59.876 44.000 0.00 0.00 0.00 3.35
2437 4246 5.890334 TGGTTTTACAGCTCAGAGTTTTTG 58.110 37.500 0.00 0.00 0.00 2.44
2453 4262 4.699257 AGTTTTTGAGATGTCTCTGCATCC 59.301 41.667 11.03 0.00 44.58 3.51
2484 4296 5.403166 CGTTCCTTTCACTATCGTGTGTTAA 59.597 40.000 0.00 0.00 41.89 2.01
2501 4313 3.501828 TGTTAATGTGCATTGCTTCGACT 59.498 39.130 10.49 0.00 32.50 4.18
2512 4324 3.314541 TGCTTCGACTAGGTTTTCTCC 57.685 47.619 0.00 0.00 0.00 3.71
2515 4327 3.429135 GCTTCGACTAGGTTTTCTCCGAT 60.429 47.826 0.00 0.00 0.00 4.18
2516 4328 4.352887 CTTCGACTAGGTTTTCTCCGATC 58.647 47.826 0.00 0.00 0.00 3.69
2517 4329 3.349927 TCGACTAGGTTTTCTCCGATCA 58.650 45.455 0.00 0.00 0.00 2.92
2518 4330 3.760151 TCGACTAGGTTTTCTCCGATCAA 59.240 43.478 0.00 0.00 0.00 2.57
2519 4331 4.219070 TCGACTAGGTTTTCTCCGATCAAA 59.781 41.667 0.00 0.00 0.00 2.69
2520 4332 4.563184 CGACTAGGTTTTCTCCGATCAAAG 59.437 45.833 0.00 0.00 0.00 2.77
2521 4333 4.833390 ACTAGGTTTTCTCCGATCAAAGG 58.167 43.478 0.00 0.00 0.00 3.11
2522 4334 3.790089 AGGTTTTCTCCGATCAAAGGT 57.210 42.857 0.00 0.00 0.00 3.50
2523 4335 3.412386 AGGTTTTCTCCGATCAAAGGTG 58.588 45.455 0.00 0.00 0.00 4.00
2524 4336 2.095212 GGTTTTCTCCGATCAAAGGTGC 60.095 50.000 0.00 0.00 0.00 5.01
2525 4337 1.821216 TTTCTCCGATCAAAGGTGCC 58.179 50.000 0.00 0.00 0.00 5.01
2526 4338 0.391130 TTCTCCGATCAAAGGTGCCG 60.391 55.000 0.00 0.00 0.00 5.69
2527 4339 1.815421 CTCCGATCAAAGGTGCCGG 60.815 63.158 0.00 0.00 40.09 6.13
2528 4340 3.508840 CCGATCAAAGGTGCCGGC 61.509 66.667 22.73 22.73 35.16 6.13
2529 4341 3.508840 CGATCAAAGGTGCCGGCC 61.509 66.667 26.77 15.53 0.00 6.13
2530 4342 2.044946 GATCAAAGGTGCCGGCCT 60.045 61.111 26.77 12.40 41.41 5.19
2531 4343 2.361610 ATCAAAGGTGCCGGCCTG 60.362 61.111 26.77 13.29 39.17 4.85
2560 4378 4.552166 ATCCCGCGTTATGAATTTCAAG 57.448 40.909 4.92 0.00 0.00 3.02
2561 4379 2.680841 TCCCGCGTTATGAATTTCAAGG 59.319 45.455 4.92 0.00 0.00 3.61
2564 4382 3.851403 CCGCGTTATGAATTTCAAGGTTG 59.149 43.478 4.92 0.00 0.00 3.77
2576 4394 3.558931 TCAAGGTTGAGAGAGCAAACA 57.441 42.857 0.00 0.00 37.93 2.83
2577 4395 4.090761 TCAAGGTTGAGAGAGCAAACAT 57.909 40.909 0.00 0.00 37.93 2.71
2582 4400 3.562505 GTTGAGAGAGCAAACATGCTTG 58.437 45.455 4.42 4.42 46.36 4.01
2613 4431 3.081061 ACATTCAGAGTGCGGCAATTTA 58.919 40.909 3.23 0.00 0.00 1.40
2614 4432 3.127548 ACATTCAGAGTGCGGCAATTTAG 59.872 43.478 3.23 0.00 0.00 1.85
2617 4435 3.609853 TCAGAGTGCGGCAATTTAGAAT 58.390 40.909 3.23 0.00 0.00 2.40
2618 4436 3.374988 TCAGAGTGCGGCAATTTAGAATG 59.625 43.478 3.23 0.00 0.00 2.67
2621 4439 3.081061 AGTGCGGCAATTTAGAATGTCA 58.919 40.909 3.23 0.00 0.00 3.58
2622 4440 3.127548 AGTGCGGCAATTTAGAATGTCAG 59.872 43.478 3.23 0.00 0.00 3.51
2623 4441 2.159393 TGCGGCAATTTAGAATGTCAGC 60.159 45.455 0.00 0.00 0.00 4.26
2624 4442 2.796032 GCGGCAATTTAGAATGTCAGCC 60.796 50.000 0.00 0.00 37.54 4.85
2625 4443 2.423185 CGGCAATTTAGAATGTCAGCCA 59.577 45.455 0.00 0.00 40.81 4.75
2626 4444 3.067180 CGGCAATTTAGAATGTCAGCCAT 59.933 43.478 0.00 0.00 40.81 4.40
2627 4445 4.614946 GGCAATTTAGAATGTCAGCCATC 58.385 43.478 0.00 0.00 40.50 3.51
2628 4446 4.340381 GGCAATTTAGAATGTCAGCCATCT 59.660 41.667 0.00 0.00 40.50 2.90
2629 4447 5.506982 GGCAATTTAGAATGTCAGCCATCTC 60.507 44.000 0.00 0.00 40.50 2.75
2630 4448 5.066893 GCAATTTAGAATGTCAGCCATCTCA 59.933 40.000 0.00 0.00 31.75 3.27
2634 4452 8.985315 ATTTAGAATGTCAGCCATCTCAATTA 57.015 30.769 0.00 0.00 31.75 1.40
2637 4455 2.279741 TGTCAGCCATCTCAATTACGC 58.720 47.619 0.00 0.00 0.00 4.42
2643 4461 3.947196 AGCCATCTCAATTACGCATTCAA 59.053 39.130 0.00 0.00 0.00 2.69
2650 4468 6.403049 TCTCAATTACGCATTCAACTCCTTA 58.597 36.000 0.00 0.00 0.00 2.69
2729 4552 8.121708 CGGATTTTGAAAAGCAAATTTCTTTCA 58.878 29.630 8.25 12.39 45.30 2.69
2730 4553 9.955208 GGATTTTGAAAAGCAAATTTCTTTCAT 57.045 25.926 8.25 6.11 45.30 2.57
2817 4641 2.103094 CACATTGAATCCTCCTCGCCTA 59.897 50.000 0.00 0.00 0.00 3.93
2824 4648 2.160721 TCCTCCTCGCCTACTTCAAT 57.839 50.000 0.00 0.00 0.00 2.57
3023 4860 3.140141 GGCGCTGCCCATTTAGCA 61.140 61.111 7.64 0.00 44.06 3.49
3024 4861 2.102946 GCGCTGCCCATTTAGCAC 59.897 61.111 0.00 0.00 39.87 4.40
3025 4862 2.800736 CGCTGCCCATTTAGCACC 59.199 61.111 0.00 0.00 39.87 5.01
3026 4863 1.750399 CGCTGCCCATTTAGCACCT 60.750 57.895 0.00 0.00 39.87 4.00
3027 4864 1.718757 CGCTGCCCATTTAGCACCTC 61.719 60.000 0.00 0.00 39.87 3.85
3028 4865 1.387295 GCTGCCCATTTAGCACCTCC 61.387 60.000 0.00 0.00 39.67 4.30
3029 4866 0.753111 CTGCCCATTTAGCACCTCCC 60.753 60.000 0.00 0.00 36.01 4.30
3030 4867 1.214305 TGCCCATTTAGCACCTCCCT 61.214 55.000 0.00 0.00 34.69 4.20
3031 4868 0.033109 GCCCATTTAGCACCTCCCTT 60.033 55.000 0.00 0.00 0.00 3.95
3032 4869 2.024306 GCCCATTTAGCACCTCCCTTC 61.024 57.143 0.00 0.00 0.00 3.46
3033 4870 1.410224 CCCATTTAGCACCTCCCTTCC 60.410 57.143 0.00 0.00 0.00 3.46
3034 4871 1.410224 CCATTTAGCACCTCCCTTCCC 60.410 57.143 0.00 0.00 0.00 3.97
3035 4872 1.284785 CATTTAGCACCTCCCTTCCCA 59.715 52.381 0.00 0.00 0.00 4.37
3036 4873 0.696501 TTTAGCACCTCCCTTCCCAC 59.303 55.000 0.00 0.00 0.00 4.61
3037 4874 1.550130 TTAGCACCTCCCTTCCCACG 61.550 60.000 0.00 0.00 0.00 4.94
3038 4875 2.449967 TAGCACCTCCCTTCCCACGA 62.450 60.000 0.00 0.00 0.00 4.35
3039 4876 2.670148 GCACCTCCCTTCCCACGAT 61.670 63.158 0.00 0.00 0.00 3.73
3040 4877 1.522569 CACCTCCCTTCCCACGATC 59.477 63.158 0.00 0.00 0.00 3.69
3041 4878 1.080354 ACCTCCCTTCCCACGATCA 59.920 57.895 0.00 0.00 0.00 2.92
3042 4879 0.978146 ACCTCCCTTCCCACGATCAG 60.978 60.000 0.00 0.00 0.00 2.90
3043 4880 1.690219 CCTCCCTTCCCACGATCAGG 61.690 65.000 0.00 0.00 0.00 3.86
3044 4881 0.978146 CTCCCTTCCCACGATCAGGT 60.978 60.000 0.00 0.00 0.00 4.00
3045 4882 0.546747 TCCCTTCCCACGATCAGGTT 60.547 55.000 0.00 0.00 0.00 3.50
3046 4883 0.328258 CCCTTCCCACGATCAGGTTT 59.672 55.000 0.00 0.00 0.00 3.27
3047 4884 1.271926 CCCTTCCCACGATCAGGTTTT 60.272 52.381 0.00 0.00 0.00 2.43
3048 4885 2.084546 CCTTCCCACGATCAGGTTTTC 58.915 52.381 0.00 0.00 0.00 2.29
3049 4886 2.552155 CCTTCCCACGATCAGGTTTTCA 60.552 50.000 0.00 0.00 0.00 2.69
3050 4887 2.940994 TCCCACGATCAGGTTTTCAA 57.059 45.000 0.00 0.00 0.00 2.69
3051 4888 2.500229 TCCCACGATCAGGTTTTCAAC 58.500 47.619 0.00 0.00 0.00 3.18
3071 4908 9.862149 TTTCAACCTACTTTTCTCTATTTTCCT 57.138 29.630 0.00 0.00 0.00 3.36
3072 4909 8.848474 TCAACCTACTTTTCTCTATTTTCCTG 57.152 34.615 0.00 0.00 0.00 3.86
3073 4910 8.656806 TCAACCTACTTTTCTCTATTTTCCTGA 58.343 33.333 0.00 0.00 0.00 3.86
3074 4911 8.722394 CAACCTACTTTTCTCTATTTTCCTGAC 58.278 37.037 0.00 0.00 0.00 3.51
3075 4912 7.097834 ACCTACTTTTCTCTATTTTCCTGACG 58.902 38.462 0.00 0.00 0.00 4.35
3076 4913 6.535508 CCTACTTTTCTCTATTTTCCTGACGG 59.464 42.308 0.00 0.00 0.00 4.79
3077 4914 4.695928 ACTTTTCTCTATTTTCCTGACGGC 59.304 41.667 0.00 0.00 0.00 5.68
3078 4915 4.553330 TTTCTCTATTTTCCTGACGGCT 57.447 40.909 0.00 0.00 0.00 5.52
3079 4916 3.526931 TCTCTATTTTCCTGACGGCTG 57.473 47.619 0.00 0.00 0.00 4.85
3080 4917 1.936547 CTCTATTTTCCTGACGGCTGC 59.063 52.381 0.00 0.00 0.00 5.25
3081 4918 1.017387 CTATTTTCCTGACGGCTGCC 58.983 55.000 9.11 9.11 0.00 4.85
3082 4919 0.326595 TATTTTCCTGACGGCTGCCA 59.673 50.000 20.29 0.00 0.00 4.92
3083 4920 0.539438 ATTTTCCTGACGGCTGCCAA 60.539 50.000 20.29 2.68 0.00 4.52
3084 4921 1.172180 TTTTCCTGACGGCTGCCAAG 61.172 55.000 20.29 12.33 0.00 3.61
3100 4937 6.381481 CTGCCAAGCATTTGAGTAATATGA 57.619 37.500 0.00 0.00 38.13 2.15
3101 4938 6.964807 TGCCAAGCATTTGAGTAATATGAT 57.035 33.333 0.00 0.00 36.36 2.45
3102 4939 6.741109 TGCCAAGCATTTGAGTAATATGATG 58.259 36.000 0.00 0.00 36.36 3.07
3103 4940 5.632347 GCCAAGCATTTGAGTAATATGATGC 59.368 40.000 0.00 0.00 39.97 3.91
3104 4941 5.854866 CCAAGCATTTGAGTAATATGATGCG 59.145 40.000 0.00 0.00 43.30 4.73
3105 4942 5.618056 AGCATTTGAGTAATATGATGCGG 57.382 39.130 0.00 0.00 43.30 5.69
3106 4943 5.308014 AGCATTTGAGTAATATGATGCGGA 58.692 37.500 0.00 0.00 43.30 5.54
3107 4944 5.410746 AGCATTTGAGTAATATGATGCGGAG 59.589 40.000 0.00 0.00 43.30 4.63
3108 4945 5.409520 GCATTTGAGTAATATGATGCGGAGA 59.590 40.000 0.00 0.00 31.83 3.71
3109 4946 6.401903 GCATTTGAGTAATATGATGCGGAGAG 60.402 42.308 0.00 0.00 31.83 3.20
3110 4947 6.405278 TTTGAGTAATATGATGCGGAGAGA 57.595 37.500 0.00 0.00 0.00 3.10
3111 4948 5.635417 TGAGTAATATGATGCGGAGAGAG 57.365 43.478 0.00 0.00 0.00 3.20
3112 4949 5.073428 TGAGTAATATGATGCGGAGAGAGT 58.927 41.667 0.00 0.00 0.00 3.24
3113 4950 6.238648 TGAGTAATATGATGCGGAGAGAGTA 58.761 40.000 0.00 0.00 0.00 2.59
3114 4951 6.372937 TGAGTAATATGATGCGGAGAGAGTAG 59.627 42.308 0.00 0.00 0.00 2.57
3115 4952 6.242396 AGTAATATGATGCGGAGAGAGTAGT 58.758 40.000 0.00 0.00 0.00 2.73
3116 4953 5.637006 AATATGATGCGGAGAGAGTAGTC 57.363 43.478 0.00 0.00 0.00 2.59
3117 4954 2.719531 TGATGCGGAGAGAGTAGTCT 57.280 50.000 0.00 0.00 34.86 3.24
3132 4969 5.246145 AGTAGTCTCTTATGTTGTACCGC 57.754 43.478 0.00 0.00 0.00 5.68
3133 4970 4.948621 AGTAGTCTCTTATGTTGTACCGCT 59.051 41.667 0.00 0.00 0.00 5.52
3134 4971 6.118170 AGTAGTCTCTTATGTTGTACCGCTA 58.882 40.000 0.00 0.00 0.00 4.26
3135 4972 5.909621 AGTCTCTTATGTTGTACCGCTAA 57.090 39.130 0.00 0.00 0.00 3.09
3136 4973 5.892568 AGTCTCTTATGTTGTACCGCTAAG 58.107 41.667 0.00 0.00 0.00 2.18
3138 4975 3.788937 TCTTATGTTGTACCGCTAAGGC 58.211 45.455 0.00 0.00 46.52 4.35
3149 4986 3.826637 GCTAAGGCGGTGTCTGTAA 57.173 52.632 0.00 0.00 0.00 2.41
3150 4987 1.356938 GCTAAGGCGGTGTCTGTAAC 58.643 55.000 0.00 0.00 0.00 2.50
3151 4988 2.005560 GCTAAGGCGGTGTCTGTAACC 61.006 57.143 0.00 0.00 0.00 2.85
3152 4989 1.274167 CTAAGGCGGTGTCTGTAACCA 59.726 52.381 0.00 0.00 37.57 3.67
3153 4990 0.470766 AAGGCGGTGTCTGTAACCAA 59.529 50.000 0.00 0.00 37.57 3.67
3154 4991 0.470766 AGGCGGTGTCTGTAACCAAA 59.529 50.000 0.00 0.00 37.57 3.28
3155 4992 0.589708 GGCGGTGTCTGTAACCAAAC 59.410 55.000 0.00 0.00 37.57 2.93
3156 4993 1.589803 GCGGTGTCTGTAACCAAACT 58.410 50.000 0.00 0.00 37.57 2.66
3157 4994 1.529865 GCGGTGTCTGTAACCAAACTC 59.470 52.381 0.00 0.00 37.57 3.01
3158 4995 2.805657 GCGGTGTCTGTAACCAAACTCT 60.806 50.000 0.00 0.00 37.57 3.24
3159 4996 3.057734 CGGTGTCTGTAACCAAACTCTC 58.942 50.000 0.00 0.00 37.57 3.20
3160 4997 3.243771 CGGTGTCTGTAACCAAACTCTCT 60.244 47.826 0.00 0.00 37.57 3.10
3161 4998 4.704965 GGTGTCTGTAACCAAACTCTCTT 58.295 43.478 0.00 0.00 37.65 2.85
3162 4999 4.750598 GGTGTCTGTAACCAAACTCTCTTC 59.249 45.833 0.00 0.00 37.65 2.87
3163 5000 5.453480 GGTGTCTGTAACCAAACTCTCTTCT 60.453 44.000 0.00 0.00 37.65 2.85
3164 5001 6.049790 GTGTCTGTAACCAAACTCTCTTCTT 58.950 40.000 0.00 0.00 0.00 2.52
3165 5002 7.208080 GTGTCTGTAACCAAACTCTCTTCTTA 58.792 38.462 0.00 0.00 0.00 2.10
3166 5003 7.709613 GTGTCTGTAACCAAACTCTCTTCTTAA 59.290 37.037 0.00 0.00 0.00 1.85
3167 5004 8.429641 TGTCTGTAACCAAACTCTCTTCTTAAT 58.570 33.333 0.00 0.00 0.00 1.40
3168 5005 9.274206 GTCTGTAACCAAACTCTCTTCTTAATT 57.726 33.333 0.00 0.00 0.00 1.40
3175 5012 9.793259 ACCAAACTCTCTTCTTAATTAATGACA 57.207 29.630 0.00 0.00 0.00 3.58
3191 5028 7.903995 TTAATGACATGGAAAATCTTTTGCC 57.096 32.000 0.00 0.00 37.65 4.52
3192 5029 5.750352 ATGACATGGAAAATCTTTTGCCT 57.250 34.783 0.00 0.00 37.65 4.75
3193 5030 5.138125 TGACATGGAAAATCTTTTGCCTC 57.862 39.130 0.00 0.00 37.65 4.70
3194 5031 4.588106 TGACATGGAAAATCTTTTGCCTCA 59.412 37.500 0.00 1.39 37.65 3.86
3195 5032 5.246656 TGACATGGAAAATCTTTTGCCTCAT 59.753 36.000 0.00 0.00 37.65 2.90
3196 5033 6.117975 ACATGGAAAATCTTTTGCCTCATT 57.882 33.333 0.00 0.00 37.65 2.57
3197 5034 6.536447 ACATGGAAAATCTTTTGCCTCATTT 58.464 32.000 0.00 0.00 37.65 2.32
3198 5035 6.652062 ACATGGAAAATCTTTTGCCTCATTTC 59.348 34.615 0.00 0.00 37.65 2.17
3199 5036 5.229423 TGGAAAATCTTTTGCCTCATTTCG 58.771 37.500 4.74 0.00 37.65 3.46
3200 5037 5.010516 TGGAAAATCTTTTGCCTCATTTCGA 59.989 36.000 4.74 0.00 37.65 3.71
3201 5038 5.925969 GGAAAATCTTTTGCCTCATTTCGAA 59.074 36.000 0.00 0.00 33.10 3.71
3202 5039 6.423604 GGAAAATCTTTTGCCTCATTTCGAAA 59.576 34.615 13.91 13.91 33.10 3.46
3203 5040 7.359514 GGAAAATCTTTTGCCTCATTTCGAAAG 60.360 37.037 16.80 8.62 35.84 2.62
3204 5041 5.964958 ATCTTTTGCCTCATTTCGAAAGA 57.035 34.783 16.80 12.17 43.13 2.52
3230 5067 9.822185 AAAAACTTTTCTGTATTTTCAGATGCT 57.178 25.926 0.00 0.00 42.84 3.79
3231 5068 9.822185 AAAACTTTTCTGTATTTTCAGATGCTT 57.178 25.926 0.00 0.00 42.84 3.91
3232 5069 9.822185 AAACTTTTCTGTATTTTCAGATGCTTT 57.178 25.926 0.00 0.00 42.84 3.51
3233 5070 9.822185 AACTTTTCTGTATTTTCAGATGCTTTT 57.178 25.926 0.00 0.00 42.84 2.27
3234 5071 9.822185 ACTTTTCTGTATTTTCAGATGCTTTTT 57.178 25.926 0.00 0.00 42.84 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 2.358737 CGACCCACCTTGGCTCAC 60.359 66.667 0.00 0.00 35.79 3.51
119 120 3.775202 CAGTTATGAAGAGGGACAGACG 58.225 50.000 0.00 0.00 0.00 4.18
123 124 1.559682 GGGCAGTTATGAAGAGGGACA 59.440 52.381 0.00 0.00 0.00 4.02
126 127 3.309296 TCTAGGGCAGTTATGAAGAGGG 58.691 50.000 0.00 0.00 0.00 4.30
144 145 4.018779 CCACTCAAACCCAACCCTAATCTA 60.019 45.833 0.00 0.00 0.00 1.98
150 151 0.106217 CACCACTCAAACCCAACCCT 60.106 55.000 0.00 0.00 0.00 4.34
177 178 1.680338 AAATATGGGCTTGCTCCGTC 58.320 50.000 0.00 0.00 0.00 4.79
178 179 3.214328 CTTAAATATGGGCTTGCTCCGT 58.786 45.455 0.00 0.00 0.00 4.69
179 180 2.030805 GCTTAAATATGGGCTTGCTCCG 60.031 50.000 0.00 0.00 0.00 4.63
208 269 3.039011 AGGGGTTAGTGTATGAGCGAAT 58.961 45.455 0.00 0.00 0.00 3.34
210 271 2.154567 AGGGGTTAGTGTATGAGCGA 57.845 50.000 0.00 0.00 0.00 4.93
212 273 5.163343 TGTTCATAGGGGTTAGTGTATGAGC 60.163 44.000 0.00 0.00 34.28 4.26
213 274 6.479972 TGTTCATAGGGGTTAGTGTATGAG 57.520 41.667 0.00 0.00 34.28 2.90
214 275 6.877668 TTGTTCATAGGGGTTAGTGTATGA 57.122 37.500 0.00 0.00 31.51 2.15
236 1244 0.178973 GGGGTAGGGTGTGCTTGTTT 60.179 55.000 0.00 0.00 0.00 2.83
237 1245 1.065997 AGGGGTAGGGTGTGCTTGTT 61.066 55.000 0.00 0.00 0.00 2.83
241 1249 0.416231 TCTTAGGGGTAGGGTGTGCT 59.584 55.000 0.00 0.00 0.00 4.40
258 1266 4.367450 GCTAAATCTCTCGAATGTGCTCT 58.633 43.478 0.00 0.00 0.00 4.09
265 1273 1.412710 TGCCGGCTAAATCTCTCGAAT 59.587 47.619 29.70 0.00 0.00 3.34
275 1283 4.623932 ATCTCAAGATATGCCGGCTAAA 57.376 40.909 29.70 13.42 32.01 1.85
277 1285 5.008712 CGTATATCTCAAGATATGCCGGCTA 59.991 44.000 29.70 17.52 44.80 3.93
283 1291 6.333416 TGGCTTCGTATATCTCAAGATATGC 58.667 40.000 18.58 16.52 44.80 3.14
289 1297 7.766283 TCTATGATGGCTTCGTATATCTCAAG 58.234 38.462 3.11 0.00 0.00 3.02
297 1305 3.866651 GGCATCTATGATGGCTTCGTAT 58.133 45.455 21.56 0.00 40.85 3.06
305 1313 3.426829 CGACTACGAGGCATCTATGATGG 60.427 52.174 9.24 0.00 42.66 3.51
321 1329 2.937799 AGGAGACATTCTCGTCGACTAC 59.062 50.000 14.70 0.00 44.28 2.73
388 1399 5.354792 GGTTTAAATCATGGTGCATGCATTT 59.645 36.000 25.64 20.08 41.18 2.32
389 1400 4.877251 GGTTTAAATCATGGTGCATGCATT 59.123 37.500 25.64 14.41 41.18 3.56
395 1406 3.763360 CTCAGGGTTTAAATCATGGTGCA 59.237 43.478 12.81 0.00 0.00 4.57
408 1419 1.247567 CGAACAATGCCTCAGGGTTT 58.752 50.000 0.00 0.00 34.45 3.27
417 1428 1.407618 GGGGATTAACCGAACAATGCC 59.592 52.381 5.28 5.28 40.76 4.40
418 1429 2.096248 TGGGGATTAACCGAACAATGC 58.904 47.619 0.00 0.00 40.11 3.56
419 1430 2.425668 GGTGGGGATTAACCGAACAATG 59.574 50.000 0.00 0.00 40.11 2.82
424 1435 1.065647 TGTGGTGGGGATTAACCGAA 58.934 50.000 0.00 0.00 39.47 4.30
425 1436 1.003812 CTTGTGGTGGGGATTAACCGA 59.996 52.381 0.00 0.00 39.47 4.69
426 1437 1.003812 TCTTGTGGTGGGGATTAACCG 59.996 52.381 0.00 0.00 39.47 4.44
427 1438 2.620627 CCTCTTGTGGTGGGGATTAACC 60.621 54.545 0.00 0.00 36.96 2.85
428 1439 2.307686 TCCTCTTGTGGTGGGGATTAAC 59.692 50.000 0.00 0.00 0.00 2.01
431 1442 1.686236 ATCCTCTTGTGGTGGGGATT 58.314 50.000 0.00 0.00 33.55 3.01
437 1448 2.355513 CCTCTCCAATCCTCTTGTGGTG 60.356 54.545 0.00 0.00 33.88 4.17
438 1449 1.912043 CCTCTCCAATCCTCTTGTGGT 59.088 52.381 0.00 0.00 33.88 4.16
439 1450 2.191400 TCCTCTCCAATCCTCTTGTGG 58.809 52.381 0.00 0.00 0.00 4.17
440 1451 4.197750 CAATCCTCTCCAATCCTCTTGTG 58.802 47.826 0.00 0.00 0.00 3.33
441 1452 3.201708 CCAATCCTCTCCAATCCTCTTGT 59.798 47.826 0.00 0.00 0.00 3.16
442 1453 3.457380 TCCAATCCTCTCCAATCCTCTTG 59.543 47.826 0.00 0.00 0.00 3.02
443 1454 3.715834 CTCCAATCCTCTCCAATCCTCTT 59.284 47.826 0.00 0.00 0.00 2.85
447 1929 1.423161 CCCTCCAATCCTCTCCAATCC 59.577 57.143 0.00 0.00 0.00 3.01
451 1933 0.326618 GACCCCTCCAATCCTCTCCA 60.327 60.000 0.00 0.00 0.00 3.86
453 1935 1.127343 CAGACCCCTCCAATCCTCTC 58.873 60.000 0.00 0.00 0.00 3.20
454 1936 0.719015 TCAGACCCCTCCAATCCTCT 59.281 55.000 0.00 0.00 0.00 3.69
457 1939 1.133976 CACATCAGACCCCTCCAATCC 60.134 57.143 0.00 0.00 0.00 3.01
460 1942 0.178876 TCCACATCAGACCCCTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
463 1945 3.019564 CAAAATCCACATCAGACCCCTC 58.980 50.000 0.00 0.00 0.00 4.30
464 1946 2.649312 TCAAAATCCACATCAGACCCCT 59.351 45.455 0.00 0.00 0.00 4.79
467 1949 4.616835 GCAAGTCAAAATCCACATCAGACC 60.617 45.833 0.00 0.00 0.00 3.85
468 1950 4.217118 AGCAAGTCAAAATCCACATCAGAC 59.783 41.667 0.00 0.00 0.00 3.51
470 1952 4.482386 CAGCAAGTCAAAATCCACATCAG 58.518 43.478 0.00 0.00 0.00 2.90
471 1953 3.256383 CCAGCAAGTCAAAATCCACATCA 59.744 43.478 0.00 0.00 0.00 3.07
473 1955 2.564062 CCCAGCAAGTCAAAATCCACAT 59.436 45.455 0.00 0.00 0.00 3.21
475 1957 1.273327 CCCCAGCAAGTCAAAATCCAC 59.727 52.381 0.00 0.00 0.00 4.02
478 1960 4.541973 AAATCCCCAGCAAGTCAAAATC 57.458 40.909 0.00 0.00 0.00 2.17
480 1962 5.046663 GGATTAAATCCCCAGCAAGTCAAAA 60.047 40.000 0.00 0.00 43.88 2.44
494 1976 5.718977 AGCACATTGGCAGGGATTAAATCC 61.719 45.833 0.00 0.00 41.85 3.01
495 1977 3.385755 AGCACATTGGCAGGGATTAAATC 59.614 43.478 0.00 0.00 35.83 2.17
499 1981 1.410083 GGAGCACATTGGCAGGGATTA 60.410 52.381 0.00 0.00 35.83 1.75
501 1983 1.076485 GGAGCACATTGGCAGGGAT 60.076 57.895 0.00 0.00 35.83 3.85
502 1984 2.079088 TTGGAGCACATTGGCAGGGA 62.079 55.000 0.00 0.00 35.83 4.20
503 1985 1.186917 TTTGGAGCACATTGGCAGGG 61.187 55.000 0.00 0.00 35.83 4.45
504 1986 0.037975 GTTTGGAGCACATTGGCAGG 60.038 55.000 0.00 0.00 35.83 4.85
507 1989 1.293179 GGGTTTGGAGCACATTGGC 59.707 57.895 0.00 0.00 0.00 4.52
508 1990 0.542702 AGGGGTTTGGAGCACATTGG 60.543 55.000 0.00 0.00 0.00 3.16
509 1991 1.001181 CAAGGGGTTTGGAGCACATTG 59.999 52.381 0.00 0.00 32.95 2.82
510 1992 1.133199 TCAAGGGGTTTGGAGCACATT 60.133 47.619 0.00 0.00 37.39 2.71
511 1993 0.482446 TCAAGGGGTTTGGAGCACAT 59.518 50.000 0.00 0.00 37.39 3.21
513 1995 1.068588 GTTTCAAGGGGTTTGGAGCAC 59.931 52.381 0.00 0.00 37.39 4.40
515 1997 0.679505 GGTTTCAAGGGGTTTGGAGC 59.320 55.000 0.00 0.00 37.39 4.70
517 1999 0.637195 TGGGTTTCAAGGGGTTTGGA 59.363 50.000 0.00 0.00 37.39 3.53
519 2001 1.412343 CACTGGGTTTCAAGGGGTTTG 59.588 52.381 0.00 0.00 38.17 2.93
523 2005 1.686587 GTTTCACTGGGTTTCAAGGGG 59.313 52.381 0.00 0.00 0.00 4.79
524 2006 1.686587 GGTTTCACTGGGTTTCAAGGG 59.313 52.381 0.00 0.00 0.00 3.95
525 2007 1.336755 CGGTTTCACTGGGTTTCAAGG 59.663 52.381 0.00 0.00 0.00 3.61
526 2008 2.294074 TCGGTTTCACTGGGTTTCAAG 58.706 47.619 0.00 0.00 0.00 3.02
527 2009 2.421751 TCGGTTTCACTGGGTTTCAA 57.578 45.000 0.00 0.00 0.00 2.69
529 2011 2.018515 TGTTCGGTTTCACTGGGTTTC 58.981 47.619 0.00 0.00 0.00 2.78
530 2012 2.131776 TGTTCGGTTTCACTGGGTTT 57.868 45.000 0.00 0.00 0.00 3.27
531 2013 2.021457 CTTGTTCGGTTTCACTGGGTT 58.979 47.619 0.00 0.00 0.00 4.11
532 2014 1.675552 CTTGTTCGGTTTCACTGGGT 58.324 50.000 0.00 0.00 0.00 4.51
533 2015 0.951558 CCTTGTTCGGTTTCACTGGG 59.048 55.000 0.00 0.00 0.00 4.45
534 2016 0.310854 GCCTTGTTCGGTTTCACTGG 59.689 55.000 0.00 0.00 0.00 4.00
535 2017 0.310854 GGCCTTGTTCGGTTTCACTG 59.689 55.000 0.00 0.00 0.00 3.66
536 2018 0.182775 AGGCCTTGTTCGGTTTCACT 59.817 50.000 0.00 0.00 0.00 3.41
537 2019 0.310854 CAGGCCTTGTTCGGTTTCAC 59.689 55.000 0.00 0.00 0.00 3.18
538 2020 0.181587 TCAGGCCTTGTTCGGTTTCA 59.818 50.000 0.00 0.00 0.00 2.69
539 2021 1.200020 CATCAGGCCTTGTTCGGTTTC 59.800 52.381 0.00 0.00 0.00 2.78
540 2022 1.247567 CATCAGGCCTTGTTCGGTTT 58.752 50.000 0.00 0.00 0.00 3.27
543 2025 1.750399 CCCATCAGGCCTTGTTCGG 60.750 63.158 0.00 0.00 0.00 4.30
544 2026 0.107017 ATCCCATCAGGCCTTGTTCG 60.107 55.000 0.00 0.00 34.51 3.95
546 2028 0.032813 CCATCCCATCAGGCCTTGTT 60.033 55.000 0.00 0.00 34.51 2.83
548 2030 1.152610 CCCATCCCATCAGGCCTTG 60.153 63.158 0.00 0.00 34.51 3.61
549 2031 2.397902 CCCCATCCCATCAGGCCTT 61.398 63.158 0.00 0.00 34.51 4.35
550 2032 2.666335 ATCCCCATCCCATCAGGCCT 62.666 60.000 0.00 0.00 34.51 5.19
551 2033 0.846427 TATCCCCATCCCATCAGGCC 60.846 60.000 0.00 0.00 34.51 5.19
552 2034 0.329596 GTATCCCCATCCCATCAGGC 59.670 60.000 0.00 0.00 34.51 4.85
553 2035 0.995024 GGTATCCCCATCCCATCAGG 59.005 60.000 0.00 0.00 0.00 3.86
554 2036 1.746157 TGGTATCCCCATCCCATCAG 58.254 55.000 0.00 0.00 38.72 2.90
563 2045 1.651770 AGGAGAAGAGTGGTATCCCCA 59.348 52.381 0.00 0.00 42.51 4.96
564 2046 2.043227 CAGGAGAAGAGTGGTATCCCC 58.957 57.143 0.00 0.00 0.00 4.81
565 2047 2.696187 GTCAGGAGAAGAGTGGTATCCC 59.304 54.545 0.00 0.00 0.00 3.85
566 2048 3.637769 AGTCAGGAGAAGAGTGGTATCC 58.362 50.000 0.00 0.00 0.00 2.59
567 2049 4.277423 GCTAGTCAGGAGAAGAGTGGTATC 59.723 50.000 0.00 0.00 0.00 2.24
568 2050 4.211920 GCTAGTCAGGAGAAGAGTGGTAT 58.788 47.826 0.00 0.00 0.00 2.73
569 2051 3.622630 GCTAGTCAGGAGAAGAGTGGTA 58.377 50.000 0.00 0.00 0.00 3.25
570 2052 2.452505 GCTAGTCAGGAGAAGAGTGGT 58.547 52.381 0.00 0.00 0.00 4.16
571 2053 1.754226 GGCTAGTCAGGAGAAGAGTGG 59.246 57.143 0.00 0.00 0.00 4.00
574 2056 2.167487 GGTTGGCTAGTCAGGAGAAGAG 59.833 54.545 0.00 0.00 0.00 2.85
576 2058 1.902508 TGGTTGGCTAGTCAGGAGAAG 59.097 52.381 0.00 0.00 0.00 2.85
584 2356 2.359900 CCAATCAGTGGTTGGCTAGTC 58.640 52.381 22.02 0.00 43.20 2.59
603 2375 1.226101 CATCACATGCGCACGAACC 60.226 57.895 14.90 0.00 0.00 3.62
613 2385 1.469703 ACACATCCAACGCATCACATG 59.530 47.619 0.00 0.00 0.00 3.21
684 2457 3.011517 AGCGATTGGGGCAGGACT 61.012 61.111 0.00 0.00 0.00 3.85
826 2611 0.391661 GAGACGGCAATGGAGCTCAA 60.392 55.000 17.19 4.05 34.17 3.02
828 2613 0.391661 TTGAGACGGCAATGGAGCTC 60.392 55.000 4.71 4.71 34.17 4.09
829 2614 0.392193 CTTGAGACGGCAATGGAGCT 60.392 55.000 0.00 0.00 34.17 4.09
830 2615 0.391661 TCTTGAGACGGCAATGGAGC 60.392 55.000 0.00 0.00 0.00 4.70
831 2616 2.005451 CTTCTTGAGACGGCAATGGAG 58.995 52.381 0.00 0.00 0.00 3.86
832 2617 1.347707 ACTTCTTGAGACGGCAATGGA 59.652 47.619 0.00 0.00 0.00 3.41
833 2618 1.813513 ACTTCTTGAGACGGCAATGG 58.186 50.000 0.00 0.00 0.00 3.16
834 2619 4.747108 CCTATACTTCTTGAGACGGCAATG 59.253 45.833 0.00 0.00 0.00 2.82
835 2620 4.649674 TCCTATACTTCTTGAGACGGCAAT 59.350 41.667 0.00 0.00 0.00 3.56
836 2621 4.021229 TCCTATACTTCTTGAGACGGCAA 58.979 43.478 0.00 0.00 0.00 4.52
837 2622 3.628008 TCCTATACTTCTTGAGACGGCA 58.372 45.455 0.00 0.00 0.00 5.69
925 2710 1.223487 GAATGCGGGGTGCTTAGGA 59.777 57.895 0.00 0.00 46.63 2.94
928 2713 0.618458 AAGAGAATGCGGGGTGCTTA 59.382 50.000 0.00 0.00 46.63 3.09
929 2714 0.678048 GAAGAGAATGCGGGGTGCTT 60.678 55.000 0.00 0.00 46.63 3.91
938 2723 3.416156 ACAAGGTGGAAGAAGAGAATGC 58.584 45.455 0.00 0.00 0.00 3.56
1410 3195 1.451207 ACACAAGCAGACCGCACAA 60.451 52.632 0.00 0.00 46.13 3.33
1423 3208 1.947146 CGTCGGCGAACTCACACAA 60.947 57.895 12.92 0.00 41.33 3.33
1838 3644 3.004524 GTCCATGACGTACTCATAGGTCC 59.995 52.174 0.00 0.00 42.89 4.46
1839 3645 3.004524 GGTCCATGACGTACTCATAGGTC 59.995 52.174 0.00 1.21 43.52 3.85
1840 3646 2.957006 GGTCCATGACGTACTCATAGGT 59.043 50.000 0.00 0.00 37.53 3.08
1841 3647 2.956333 TGGTCCATGACGTACTCATAGG 59.044 50.000 0.00 10.25 37.53 2.57
1842 3648 3.883489 TCTGGTCCATGACGTACTCATAG 59.117 47.826 0.00 2.39 37.53 2.23
1843 3649 3.883489 CTCTGGTCCATGACGTACTCATA 59.117 47.826 0.00 0.00 37.53 2.15
1844 3650 2.690497 CTCTGGTCCATGACGTACTCAT 59.310 50.000 0.00 2.97 40.59 2.90
1845 3651 2.092323 CTCTGGTCCATGACGTACTCA 58.908 52.381 0.00 0.00 32.65 3.41
1846 3652 1.202313 GCTCTGGTCCATGACGTACTC 60.202 57.143 0.00 0.00 32.65 2.59
1847 3653 0.818296 GCTCTGGTCCATGACGTACT 59.182 55.000 0.00 0.00 32.65 2.73
1848 3654 0.818296 AGCTCTGGTCCATGACGTAC 59.182 55.000 0.00 0.00 32.65 3.67
1849 3655 1.103803 GAGCTCTGGTCCATGACGTA 58.896 55.000 6.43 0.00 32.65 3.57
1850 3656 1.893786 GAGCTCTGGTCCATGACGT 59.106 57.895 6.43 0.00 32.65 4.34
1851 3657 4.823276 GAGCTCTGGTCCATGACG 57.177 61.111 6.43 0.00 32.65 4.35
1908 3714 1.810030 GTCCATCGTGGGCTTCGAC 60.810 63.158 6.70 0.00 39.55 4.20
2287 4096 0.793250 GGAGCAAAGAACTCTGCGAC 59.207 55.000 0.00 0.00 43.51 5.19
2322 4131 2.935201 GCGCTGATAATCTGGATCCATC 59.065 50.000 16.63 10.21 0.00 3.51
2323 4132 2.676176 CGCGCTGATAATCTGGATCCAT 60.676 50.000 16.63 2.74 0.00 3.41
2324 4133 1.337167 CGCGCTGATAATCTGGATCCA 60.337 52.381 15.27 15.27 0.00 3.41
2384 4193 0.607620 ATTCCACCCACGCAAAATGG 59.392 50.000 0.00 0.00 36.94 3.16
2416 4225 7.016361 TCTCAAAAACTCTGAGCTGTAAAAC 57.984 36.000 4.19 0.00 40.18 2.43
2423 4232 5.011943 AGAGACATCTCAAAAACTCTGAGCT 59.988 40.000 11.39 0.00 45.21 4.09
2430 4239 4.699257 GGATGCAGAGACATCTCAAAAACT 59.301 41.667 11.39 0.00 44.81 2.66
2431 4240 4.436584 CGGATGCAGAGACATCTCAAAAAC 60.437 45.833 11.39 0.50 44.81 2.43
2437 4246 2.897780 GCGGATGCAGAGACATCTC 58.102 57.895 0.26 0.26 44.81 2.75
2484 4296 2.283298 CCTAGTCGAAGCAATGCACAT 58.717 47.619 8.35 0.00 0.00 3.21
2501 4313 4.575885 CACCTTTGATCGGAGAAAACCTA 58.424 43.478 0.00 0.00 43.58 3.08
2512 4324 3.508840 GGCCGGCACCTTTGATCG 61.509 66.667 30.85 0.00 0.00 3.69
2526 4338 2.032681 GGGATATCGGTGCAGGCC 59.967 66.667 0.00 0.00 0.00 5.19
2527 4339 2.357517 CGGGATATCGGTGCAGGC 60.358 66.667 0.00 0.00 0.00 4.85
2528 4340 2.357517 GCGGGATATCGGTGCAGG 60.358 66.667 7.37 0.00 0.00 4.85
2529 4341 2.734723 CGCGGGATATCGGTGCAG 60.735 66.667 0.00 3.09 0.00 4.41
2530 4342 1.736365 TAACGCGGGATATCGGTGCA 61.736 55.000 12.47 0.00 0.00 4.57
2531 4343 0.389426 ATAACGCGGGATATCGGTGC 60.389 55.000 12.47 0.00 0.00 5.01
2532 4344 1.068125 TCATAACGCGGGATATCGGTG 60.068 52.381 12.47 0.76 0.00 4.94
2533 4345 1.250328 TCATAACGCGGGATATCGGT 58.750 50.000 12.47 0.00 0.00 4.69
2534 4346 2.357327 TTCATAACGCGGGATATCGG 57.643 50.000 12.47 0.00 0.00 4.18
2535 4347 4.387559 TGAAATTCATAACGCGGGATATCG 59.612 41.667 12.47 0.14 0.00 2.92
2536 4348 5.856126 TGAAATTCATAACGCGGGATATC 57.144 39.130 12.47 0.00 0.00 1.63
2541 4353 2.422127 ACCTTGAAATTCATAACGCGGG 59.578 45.455 12.47 0.00 0.00 6.13
2560 4378 2.626088 GCATGTTTGCTCTCTCAACC 57.374 50.000 0.00 0.00 45.77 3.77
2596 4414 2.760634 TCTAAATTGCCGCACTCTGA 57.239 45.000 0.00 0.00 0.00 3.27
2597 4415 3.127548 ACATTCTAAATTGCCGCACTCTG 59.872 43.478 0.00 0.00 0.00 3.35
2598 4416 3.347216 ACATTCTAAATTGCCGCACTCT 58.653 40.909 0.00 0.00 0.00 3.24
2599 4417 3.126858 TGACATTCTAAATTGCCGCACTC 59.873 43.478 0.00 0.00 0.00 3.51
2600 4418 3.081061 TGACATTCTAAATTGCCGCACT 58.919 40.909 0.00 0.00 0.00 4.40
2601 4419 3.429085 CTGACATTCTAAATTGCCGCAC 58.571 45.455 0.00 0.00 0.00 5.34
2602 4420 2.159393 GCTGACATTCTAAATTGCCGCA 60.159 45.455 0.00 0.00 0.00 5.69
2613 4431 4.813161 CGTAATTGAGATGGCTGACATTCT 59.187 41.667 0.00 0.00 40.72 2.40
2614 4432 4.553547 GCGTAATTGAGATGGCTGACATTC 60.554 45.833 0.00 0.00 40.72 2.67
2617 4435 2.279741 GCGTAATTGAGATGGCTGACA 58.720 47.619 0.00 0.00 0.00 3.58
2618 4436 2.279741 TGCGTAATTGAGATGGCTGAC 58.720 47.619 0.00 0.00 0.00 3.51
2621 4439 3.544684 TGAATGCGTAATTGAGATGGCT 58.455 40.909 0.00 0.00 0.00 4.75
2622 4440 3.969117 TGAATGCGTAATTGAGATGGC 57.031 42.857 0.00 0.00 0.00 4.40
2623 4441 5.490139 AGTTGAATGCGTAATTGAGATGG 57.510 39.130 0.00 0.00 0.00 3.51
2624 4442 5.295292 AGGAGTTGAATGCGTAATTGAGATG 59.705 40.000 0.00 0.00 0.00 2.90
2625 4443 5.431765 AGGAGTTGAATGCGTAATTGAGAT 58.568 37.500 0.00 0.00 0.00 2.75
2626 4444 4.832248 AGGAGTTGAATGCGTAATTGAGA 58.168 39.130 0.00 0.00 0.00 3.27
2627 4445 5.551760 AAGGAGTTGAATGCGTAATTGAG 57.448 39.130 0.00 0.00 0.00 3.02
2628 4446 6.170506 ACTAAGGAGTTGAATGCGTAATTGA 58.829 36.000 0.00 0.00 28.61 2.57
2629 4447 6.422776 ACTAAGGAGTTGAATGCGTAATTG 57.577 37.500 0.00 0.00 28.61 2.32
2630 4448 7.448748 AAACTAAGGAGTTGAATGCGTAATT 57.551 32.000 0.00 0.00 45.50 1.40
2634 4452 5.298276 TGAAAAACTAAGGAGTTGAATGCGT 59.702 36.000 0.00 0.00 45.50 5.24
2637 4455 9.918630 ATGAATGAAAAACTAAGGAGTTGAATG 57.081 29.630 0.00 0.00 45.50 2.67
2643 4461 6.012745 AGCCATGAATGAAAAACTAAGGAGT 58.987 36.000 0.00 0.00 37.59 3.85
2650 4468 2.027837 GCCCAGCCATGAATGAAAAACT 60.028 45.455 0.00 0.00 0.00 2.66
2729 4552 6.096282 GCCACCCCACGCATTATTATTATTAT 59.904 38.462 0.00 0.00 0.00 1.28
2730 4553 5.416326 GCCACCCCACGCATTATTATTATTA 59.584 40.000 0.00 0.00 0.00 0.98
2731 4554 4.219725 GCCACCCCACGCATTATTATTATT 59.780 41.667 0.00 0.00 0.00 1.40
2732 4555 3.761752 GCCACCCCACGCATTATTATTAT 59.238 43.478 0.00 0.00 0.00 1.28
2733 4556 3.150767 GCCACCCCACGCATTATTATTA 58.849 45.455 0.00 0.00 0.00 0.98
2734 4557 1.960689 GCCACCCCACGCATTATTATT 59.039 47.619 0.00 0.00 0.00 1.40
2824 4648 3.062099 GCAATTATGCGAGTGTTCTTCGA 59.938 43.478 0.00 0.00 43.83 3.71
2899 4723 3.247006 TGGAGGACGAGACATTAAAGC 57.753 47.619 0.00 0.00 0.00 3.51
2900 4724 6.150396 ACTATGGAGGACGAGACATTAAAG 57.850 41.667 0.00 0.00 0.00 1.85
3011 4848 1.214305 AGGGAGGTGCTAAATGGGCA 61.214 55.000 0.00 0.00 37.36 5.36
3016 4853 1.285078 GTGGGAAGGGAGGTGCTAAAT 59.715 52.381 0.00 0.00 0.00 1.40
3017 4854 0.696501 GTGGGAAGGGAGGTGCTAAA 59.303 55.000 0.00 0.00 0.00 1.85
3018 4855 1.550130 CGTGGGAAGGGAGGTGCTAA 61.550 60.000 0.00 0.00 0.00 3.09
3019 4856 1.987855 CGTGGGAAGGGAGGTGCTA 60.988 63.158 0.00 0.00 0.00 3.49
3020 4857 3.322466 CGTGGGAAGGGAGGTGCT 61.322 66.667 0.00 0.00 0.00 4.40
3021 4858 2.595009 GATCGTGGGAAGGGAGGTGC 62.595 65.000 0.00 0.00 0.00 5.01
3022 4859 1.264749 TGATCGTGGGAAGGGAGGTG 61.265 60.000 0.00 0.00 0.00 4.00
3023 4860 0.978146 CTGATCGTGGGAAGGGAGGT 60.978 60.000 0.00 0.00 0.00 3.85
3024 4861 1.690219 CCTGATCGTGGGAAGGGAGG 61.690 65.000 0.00 0.00 0.00 4.30
3025 4862 0.978146 ACCTGATCGTGGGAAGGGAG 60.978 60.000 9.04 0.00 33.87 4.30
3026 4863 0.546747 AACCTGATCGTGGGAAGGGA 60.547 55.000 9.04 0.00 33.87 4.20
3027 4864 0.328258 AAACCTGATCGTGGGAAGGG 59.672 55.000 9.04 0.00 33.87 3.95
3028 4865 2.084546 GAAAACCTGATCGTGGGAAGG 58.915 52.381 9.04 1.74 35.82 3.46
3029 4866 2.778299 TGAAAACCTGATCGTGGGAAG 58.222 47.619 9.04 0.00 0.00 3.46
3030 4867 2.882137 GTTGAAAACCTGATCGTGGGAA 59.118 45.455 9.04 0.00 42.21 3.97
3031 4868 2.500229 GTTGAAAACCTGATCGTGGGA 58.500 47.619 9.04 0.00 42.21 4.37
3032 4869 2.989422 GTTGAAAACCTGATCGTGGG 57.011 50.000 9.04 4.01 42.21 4.61
3045 4882 9.862149 AGGAAAATAGAGAAAAGTAGGTTGAAA 57.138 29.630 0.00 0.00 0.00 2.69
3046 4883 9.284968 CAGGAAAATAGAGAAAAGTAGGTTGAA 57.715 33.333 0.00 0.00 0.00 2.69
3047 4884 8.656806 TCAGGAAAATAGAGAAAAGTAGGTTGA 58.343 33.333 0.00 0.00 0.00 3.18
3048 4885 8.722394 GTCAGGAAAATAGAGAAAAGTAGGTTG 58.278 37.037 0.00 0.00 0.00 3.77
3049 4886 7.603024 CGTCAGGAAAATAGAGAAAAGTAGGTT 59.397 37.037 0.00 0.00 0.00 3.50
3050 4887 7.097834 CGTCAGGAAAATAGAGAAAAGTAGGT 58.902 38.462 0.00 0.00 0.00 3.08
3051 4888 6.535508 CCGTCAGGAAAATAGAGAAAAGTAGG 59.464 42.308 0.00 0.00 41.02 3.18
3052 4889 6.036191 GCCGTCAGGAAAATAGAGAAAAGTAG 59.964 42.308 0.00 0.00 41.02 2.57
3053 4890 5.873164 GCCGTCAGGAAAATAGAGAAAAGTA 59.127 40.000 0.00 0.00 41.02 2.24
3054 4891 4.695928 GCCGTCAGGAAAATAGAGAAAAGT 59.304 41.667 0.00 0.00 41.02 2.66
3055 4892 4.938226 AGCCGTCAGGAAAATAGAGAAAAG 59.062 41.667 0.00 0.00 41.02 2.27
3056 4893 4.695455 CAGCCGTCAGGAAAATAGAGAAAA 59.305 41.667 0.00 0.00 41.02 2.29
3057 4894 4.253685 CAGCCGTCAGGAAAATAGAGAAA 58.746 43.478 0.00 0.00 41.02 2.52
3058 4895 3.861840 CAGCCGTCAGGAAAATAGAGAA 58.138 45.455 0.00 0.00 41.02 2.87
3059 4896 2.418746 GCAGCCGTCAGGAAAATAGAGA 60.419 50.000 0.00 0.00 41.02 3.10
3060 4897 1.936547 GCAGCCGTCAGGAAAATAGAG 59.063 52.381 0.00 0.00 41.02 2.43
3061 4898 1.406887 GGCAGCCGTCAGGAAAATAGA 60.407 52.381 0.00 0.00 41.02 1.98
3062 4899 1.017387 GGCAGCCGTCAGGAAAATAG 58.983 55.000 0.00 0.00 41.02 1.73
3063 4900 0.326595 TGGCAGCCGTCAGGAAAATA 59.673 50.000 7.03 0.00 41.02 1.40
3064 4901 0.539438 TTGGCAGCCGTCAGGAAAAT 60.539 50.000 7.03 0.00 41.02 1.82
3065 4902 1.152860 TTGGCAGCCGTCAGGAAAA 60.153 52.632 7.03 0.00 41.02 2.29
3066 4903 1.600636 CTTGGCAGCCGTCAGGAAA 60.601 57.895 7.03 0.00 41.02 3.13
3067 4904 2.032528 CTTGGCAGCCGTCAGGAA 59.967 61.111 7.03 0.00 41.02 3.36
3068 4905 4.704833 GCTTGGCAGCCGTCAGGA 62.705 66.667 7.03 0.00 40.61 3.86
3070 4907 1.870055 AAATGCTTGGCAGCCGTCAG 61.870 55.000 7.03 3.72 46.74 3.51
3071 4908 1.902918 AAATGCTTGGCAGCCGTCA 60.903 52.632 7.03 4.68 46.74 4.35
3072 4909 1.444895 CAAATGCTTGGCAGCCGTC 60.445 57.895 7.03 0.00 46.74 4.79
3073 4910 1.870055 CTCAAATGCTTGGCAGCCGT 61.870 55.000 7.03 0.00 46.74 5.68
3074 4911 1.153901 CTCAAATGCTTGGCAGCCG 60.154 57.895 7.03 0.00 46.74 5.52
3075 4912 1.176527 TACTCAAATGCTTGGCAGCC 58.823 50.000 3.66 3.66 46.74 4.85
3076 4913 3.515330 ATTACTCAAATGCTTGGCAGC 57.485 42.857 0.00 2.53 43.65 5.25
3077 4914 6.381481 TCATATTACTCAAATGCTTGGCAG 57.619 37.500 0.00 0.00 43.65 4.85
3078 4915 6.736519 GCATCATATTACTCAAATGCTTGGCA 60.737 38.462 0.00 0.00 44.86 4.92
3079 4916 5.632347 GCATCATATTACTCAAATGCTTGGC 59.368 40.000 0.00 0.00 37.21 4.52
3080 4917 5.854866 CGCATCATATTACTCAAATGCTTGG 59.145 40.000 0.00 0.00 37.85 3.61
3081 4918 5.854866 CCGCATCATATTACTCAAATGCTTG 59.145 40.000 0.00 0.00 37.85 4.01
3082 4919 5.764686 TCCGCATCATATTACTCAAATGCTT 59.235 36.000 0.00 0.00 37.85 3.91
3083 4920 5.308014 TCCGCATCATATTACTCAAATGCT 58.692 37.500 0.00 0.00 37.85 3.79
3084 4921 5.409520 TCTCCGCATCATATTACTCAAATGC 59.590 40.000 0.00 0.00 36.91 3.56
3085 4922 6.870439 TCTCTCCGCATCATATTACTCAAATG 59.130 38.462 0.00 0.00 0.00 2.32
3086 4923 6.997655 TCTCTCCGCATCATATTACTCAAAT 58.002 36.000 0.00 0.00 0.00 2.32
3087 4924 6.040955 ACTCTCTCCGCATCATATTACTCAAA 59.959 38.462 0.00 0.00 0.00 2.69
3088 4925 5.536538 ACTCTCTCCGCATCATATTACTCAA 59.463 40.000 0.00 0.00 0.00 3.02
3089 4926 5.073428 ACTCTCTCCGCATCATATTACTCA 58.927 41.667 0.00 0.00 0.00 3.41
3090 4927 5.637006 ACTCTCTCCGCATCATATTACTC 57.363 43.478 0.00 0.00 0.00 2.59
3091 4928 6.242396 ACTACTCTCTCCGCATCATATTACT 58.758 40.000 0.00 0.00 0.00 2.24
3092 4929 6.373216 AGACTACTCTCTCCGCATCATATTAC 59.627 42.308 0.00 0.00 0.00 1.89
3093 4930 6.477253 AGACTACTCTCTCCGCATCATATTA 58.523 40.000 0.00 0.00 0.00 0.98
3094 4931 5.321102 AGACTACTCTCTCCGCATCATATT 58.679 41.667 0.00 0.00 0.00 1.28
3095 4932 4.917385 AGACTACTCTCTCCGCATCATAT 58.083 43.478 0.00 0.00 0.00 1.78
3096 4933 4.320023 GAGACTACTCTCTCCGCATCATA 58.680 47.826 0.00 0.00 40.09 2.15
3097 4934 3.146066 GAGACTACTCTCTCCGCATCAT 58.854 50.000 0.00 0.00 40.09 2.45
3098 4935 2.566913 GAGACTACTCTCTCCGCATCA 58.433 52.381 0.00 0.00 40.09 3.07
3109 4946 5.066246 AGCGGTACAACATAAGAGACTACTC 59.934 44.000 0.00 0.00 42.90 2.59
3110 4947 4.948621 AGCGGTACAACATAAGAGACTACT 59.051 41.667 0.00 0.00 0.00 2.57
3111 4948 5.246145 AGCGGTACAACATAAGAGACTAC 57.754 43.478 0.00 0.00 0.00 2.73
3112 4949 6.039047 CCTTAGCGGTACAACATAAGAGACTA 59.961 42.308 0.00 0.00 0.00 2.59
3113 4950 5.163540 CCTTAGCGGTACAACATAAGAGACT 60.164 44.000 0.00 0.00 0.00 3.24
3114 4951 5.041940 CCTTAGCGGTACAACATAAGAGAC 58.958 45.833 0.00 0.00 0.00 3.36
3115 4952 4.441079 GCCTTAGCGGTACAACATAAGAGA 60.441 45.833 0.00 0.00 34.25 3.10
3116 4953 3.802685 GCCTTAGCGGTACAACATAAGAG 59.197 47.826 0.00 0.00 34.25 2.85
3117 4954 3.788937 GCCTTAGCGGTACAACATAAGA 58.211 45.455 0.00 0.00 34.25 2.10
3131 4968 1.356938 GTTACAGACACCGCCTTAGC 58.643 55.000 0.00 0.00 0.00 3.09
3132 4969 1.274167 TGGTTACAGACACCGCCTTAG 59.726 52.381 0.00 0.00 37.07 2.18
3133 4970 1.340088 TGGTTACAGACACCGCCTTA 58.660 50.000 0.00 0.00 37.07 2.69
3134 4971 0.470766 TTGGTTACAGACACCGCCTT 59.529 50.000 0.00 0.00 37.07 4.35
3135 4972 0.470766 TTTGGTTACAGACACCGCCT 59.529 50.000 0.00 0.00 37.07 5.52
3136 4973 0.589708 GTTTGGTTACAGACACCGCC 59.410 55.000 0.00 0.00 37.07 6.13
3137 4974 1.529865 GAGTTTGGTTACAGACACCGC 59.470 52.381 0.00 0.00 37.07 5.68
3138 4975 3.057734 GAGAGTTTGGTTACAGACACCG 58.942 50.000 0.00 0.00 37.07 4.94
3139 4976 4.338379 AGAGAGTTTGGTTACAGACACC 57.662 45.455 0.00 0.00 34.35 4.16
3140 4977 5.602628 AGAAGAGAGTTTGGTTACAGACAC 58.397 41.667 0.00 0.00 34.35 3.67
3141 4978 5.871396 AGAAGAGAGTTTGGTTACAGACA 57.129 39.130 0.00 0.00 34.35 3.41
3142 4979 8.834749 ATTAAGAAGAGAGTTTGGTTACAGAC 57.165 34.615 0.00 0.00 32.20 3.51
3149 4986 9.793259 TGTCATTAATTAAGAAGAGAGTTTGGT 57.207 29.630 3.94 0.00 0.00 3.67
3165 5002 8.949177 GGCAAAAGATTTTCCATGTCATTAATT 58.051 29.630 0.00 0.00 0.00 1.40
3166 5003 8.323567 AGGCAAAAGATTTTCCATGTCATTAAT 58.676 29.630 0.00 0.00 0.00 1.40
3167 5004 7.678837 AGGCAAAAGATTTTCCATGTCATTAA 58.321 30.769 0.00 0.00 0.00 1.40
3168 5005 7.039152 TGAGGCAAAAGATTTTCCATGTCATTA 60.039 33.333 0.00 0.00 0.00 1.90
3169 5006 6.117975 AGGCAAAAGATTTTCCATGTCATT 57.882 33.333 0.00 0.00 0.00 2.57
3170 5007 5.246656 TGAGGCAAAAGATTTTCCATGTCAT 59.753 36.000 0.00 0.00 0.00 3.06
3171 5008 4.588106 TGAGGCAAAAGATTTTCCATGTCA 59.412 37.500 0.00 0.00 0.00 3.58
3172 5009 5.138125 TGAGGCAAAAGATTTTCCATGTC 57.862 39.130 0.00 0.00 0.00 3.06
3173 5010 5.750352 ATGAGGCAAAAGATTTTCCATGT 57.250 34.783 0.00 0.00 0.00 3.21
3174 5011 6.183360 CGAAATGAGGCAAAAGATTTTCCATG 60.183 38.462 0.00 0.00 0.00 3.66
3175 5012 5.870978 CGAAATGAGGCAAAAGATTTTCCAT 59.129 36.000 0.00 0.00 0.00 3.41
3176 5013 5.010516 TCGAAATGAGGCAAAAGATTTTCCA 59.989 36.000 0.00 0.00 0.00 3.53
3177 5014 5.469479 TCGAAATGAGGCAAAAGATTTTCC 58.531 37.500 0.00 0.00 0.00 3.13
3178 5015 7.382218 TCTTTCGAAATGAGGCAAAAGATTTTC 59.618 33.333 11.70 0.00 30.19 2.29
3179 5016 7.209475 TCTTTCGAAATGAGGCAAAAGATTTT 58.791 30.769 11.70 0.00 30.19 1.82
3180 5017 6.748132 TCTTTCGAAATGAGGCAAAAGATTT 58.252 32.000 11.70 0.00 30.19 2.17
3181 5018 6.331369 TCTTTCGAAATGAGGCAAAAGATT 57.669 33.333 11.70 0.00 30.19 2.40
3182 5019 5.964958 TCTTTCGAAATGAGGCAAAAGAT 57.035 34.783 11.70 0.00 30.19 2.40
3183 5020 5.766150 TTCTTTCGAAATGAGGCAAAAGA 57.234 34.783 11.70 0.00 32.54 2.52
3184 5021 6.826893 TTTTCTTTCGAAATGAGGCAAAAG 57.173 33.333 11.70 0.00 38.81 2.27
3185 5022 6.816140 AGTTTTTCTTTCGAAATGAGGCAAAA 59.184 30.769 11.70 11.06 38.81 2.44
3186 5023 6.337356 AGTTTTTCTTTCGAAATGAGGCAAA 58.663 32.000 11.70 6.38 38.81 3.68
3187 5024 5.901552 AGTTTTTCTTTCGAAATGAGGCAA 58.098 33.333 11.70 0.93 38.81 4.52
3188 5025 5.514274 AGTTTTTCTTTCGAAATGAGGCA 57.486 34.783 11.70 0.00 38.81 4.75
3189 5026 6.828502 AAAGTTTTTCTTTCGAAATGAGGC 57.171 33.333 11.70 1.19 41.94 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.