Multiple sequence alignment - TraesCS4B01G191300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G191300 chr4B 100.000 2973 0 0 1 2973 413829497 413832469 0.000000e+00 5491.0
1 TraesCS4B01G191300 chr4B 100.000 2295 0 0 3269 5563 413832765 413835059 0.000000e+00 4239.0
2 TraesCS4B01G191300 chr4B 96.742 399 12 1 5165 5563 413847312 413847709 0.000000e+00 664.0
3 TraesCS4B01G191300 chr4B 96.212 396 15 0 5168 5563 472959257 472958862 0.000000e+00 649.0
4 TraesCS4B01G191300 chr4B 91.667 96 4 4 2195 2288 413831630 413831723 4.520000e-26 130.0
5 TraesCS4B01G191300 chr4B 91.667 96 4 4 2134 2227 413831691 413831784 4.520000e-26 130.0
6 TraesCS4B01G191300 chr4D 97.217 2982 55 7 12 2973 335773060 335776033 0.000000e+00 5022.0
7 TraesCS4B01G191300 chr4D 94.971 855 28 7 3276 4125 335776359 335777203 0.000000e+00 1327.0
8 TraesCS4B01G191300 chr4D 89.220 1039 49 29 4123 5130 335777329 335778335 0.000000e+00 1240.0
9 TraesCS4B01G191300 chr4D 91.667 96 4 4 2134 2227 335775255 335775348 4.520000e-26 130.0
10 TraesCS4B01G191300 chr4D 90.625 96 5 4 2195 2288 335775194 335775287 2.100000e-24 124.0
11 TraesCS4B01G191300 chr4A 93.158 1520 60 13 1 1495 137188379 137186879 0.000000e+00 2191.0
12 TraesCS4B01G191300 chr4A 95.568 1083 36 7 1538 2612 137186884 137185806 0.000000e+00 1724.0
13 TraesCS4B01G191300 chr4A 95.863 846 25 4 3269 4113 137185038 137184202 0.000000e+00 1360.0
14 TraesCS4B01G191300 chr4A 91.176 1020 38 20 4169 5163 137183277 137182285 0.000000e+00 1338.0
15 TraesCS4B01G191300 chr4A 97.019 369 8 1 2605 2973 137185707 137185342 7.920000e-173 617.0
16 TraesCS4B01G191300 chr4A 92.708 96 3 4 2195 2288 137186284 137186191 9.720000e-28 135.0
17 TraesCS4B01G191300 chr7B 96.970 396 12 0 5168 5563 303648874 303649269 0.000000e+00 665.0
18 TraesCS4B01G191300 chr7B 96.465 396 13 1 5168 5563 259398817 259398423 0.000000e+00 652.0
19 TraesCS4B01G191300 chr7B 96.465 396 13 1 5168 5563 349852957 349853351 0.000000e+00 652.0
20 TraesCS4B01G191300 chr7B 96.241 399 13 2 5165 5563 349865627 349866023 0.000000e+00 652.0
21 TraesCS4B01G191300 chr7B 95.990 399 16 0 5165 5563 252632778 252633176 0.000000e+00 649.0
22 TraesCS4B01G191300 chr7B 87.879 165 17 3 1228 1390 508824601 508824438 2.050000e-44 191.0
23 TraesCS4B01G191300 chr7B 89.130 46 5 0 2605 2650 145682428 145682383 2.160000e-04 58.4
24 TraesCS4B01G191300 chr2B 96.212 396 14 1 5168 5563 78165877 78165483 0.000000e+00 647.0
25 TraesCS4B01G191300 chr2B 94.660 412 18 2 5152 5563 177356215 177355808 2.190000e-178 636.0
26 TraesCS4B01G191300 chr2B 91.720 157 12 1 1227 1383 190023044 190022889 3.370000e-52 217.0
27 TraesCS4B01G191300 chr5D 92.903 155 9 2 1228 1381 175299904 175300057 2.020000e-54 224.0
28 TraesCS4B01G191300 chr5D 100.000 28 0 0 2626 2653 538662436 538662463 1.000000e-02 52.8
29 TraesCS4B01G191300 chr5A 91.772 158 11 2 1228 1385 328945727 328945882 9.380000e-53 219.0
30 TraesCS4B01G191300 chr2D 92.258 155 11 1 1228 1382 79056167 79056320 9.380000e-53 219.0
31 TraesCS4B01G191300 chr2D 94.737 38 2 0 2620 2657 576281165 576281202 6.020000e-05 60.2
32 TraesCS4B01G191300 chr2D 97.059 34 1 0 2620 2653 133774455 133774488 2.160000e-04 58.4
33 TraesCS4B01G191300 chr6B 91.250 160 13 1 1227 1386 209587387 209587545 3.370000e-52 217.0
34 TraesCS4B01G191300 chr6B 85.882 170 21 2 1228 1395 633901779 633901611 1.590000e-40 178.0
35 TraesCS4B01G191300 chr2A 91.720 157 12 1 1227 1383 141506471 141506316 3.370000e-52 217.0
36 TraesCS4B01G191300 chr2A 94.872 39 2 0 2619 2657 714330092 714330130 1.670000e-05 62.1
37 TraesCS4B01G191300 chr7A 91.667 156 11 2 1228 1382 579808374 579808528 1.210000e-51 215.0
38 TraesCS4B01G191300 chr7A 86.713 143 16 3 1250 1390 549715212 549715071 7.460000e-34 156.0
39 TraesCS4B01G191300 chr3A 87.135 171 17 5 1229 1398 466791159 466790993 7.360000e-44 189.0
40 TraesCS4B01G191300 chr3A 94.595 37 2 0 394 430 219801714 219801678 2.160000e-04 58.4
41 TraesCS4B01G191300 chr3B 86.127 173 19 4 1228 1398 447622346 447622177 1.230000e-41 182.0
42 TraesCS4B01G191300 chr3D 100.000 28 0 0 2623 2650 600083809 600083836 1.000000e-02 52.8
43 TraesCS4B01G191300 chr1A 100.000 28 0 0 2620 2647 355717013 355716986 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G191300 chr4B 413829497 413835059 5562 False 2497.5 5491 95.833500 1 5563 4 chr4B.!!$F2 5562
1 TraesCS4B01G191300 chr4D 335773060 335778335 5275 False 1568.6 5022 92.740000 12 5130 5 chr4D.!!$F1 5118
2 TraesCS4B01G191300 chr4A 137182285 137188379 6094 True 1227.5 2191 94.248667 1 5163 6 chr4A.!!$R1 5162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 196 0.563672 ACACCTCTATCCTCCCCCTC 59.436 60.000 0.00 0.00 0.00 4.30 F
901 916 1.277842 TCGGCTAACTCAATTCTGCCA 59.722 47.619 0.00 0.00 39.00 4.92 F
1026 1052 1.550976 GGGAGTCGACAGATGGAACTT 59.449 52.381 19.50 0.00 0.00 2.66 F
1645 1677 2.559698 TGATTTCCGAAAGCTCACCA 57.440 45.000 10.31 0.00 0.00 4.17 F
2802 2947 3.780804 TTGAACCTTTACCTGCTAGCA 57.219 42.857 18.22 18.22 0.00 3.49 F
4157 4462 0.103755 TCGACAGGATGCTGCATCTC 59.896 55.000 33.94 24.74 42.53 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1634 2.832129 TCCCATGGTTGAGTGACTCTAC 59.168 50.000 16.95 16.95 35.97 2.59 R
2630 2775 0.534652 CTAGTACTCCCTCCGTCCCG 60.535 65.000 0.00 0.00 0.00 5.14 R
2802 2947 5.493133 TGTATCGTTGAAGCAACTGTTTT 57.507 34.783 8.46 0.00 41.62 2.43 R
3394 3562 3.037549 TCTTGCCAAACAACCTGGAAAT 58.962 40.909 0.00 0.00 35.85 2.17 R
4526 5595 0.308684 CAGCGCAAGAGCTTTTGTGA 59.691 50.000 28.88 0.00 46.80 3.58 R
5195 6297 0.033306 AAGGTCCTAGGACTCGGGTC 60.033 60.000 35.12 20.60 44.04 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.276421 TGCCTTCCTTTCCTCTTCTCG 59.724 52.381 0.00 0.00 0.00 4.04
185 196 0.563672 ACACCTCTATCCTCCCCCTC 59.436 60.000 0.00 0.00 0.00 4.30
190 201 2.290060 TATCCTCCCCCTCCCCCA 60.290 66.667 0.00 0.00 0.00 4.96
476 488 3.070748 GCCTCTCCTCAGTTCTTGTTTC 58.929 50.000 0.00 0.00 0.00 2.78
603 615 3.868077 TGGTTTTGGAAGAAAAATGTGCG 59.132 39.130 0.00 0.00 32.02 5.34
701 716 1.527034 TGAATGCACAGTTCAGCTCC 58.473 50.000 0.00 0.00 32.23 4.70
715 730 1.951631 GCTCCGCGAGTTCCATAGC 60.952 63.158 8.23 0.00 31.39 2.97
716 731 1.300233 CTCCGCGAGTTCCATAGCC 60.300 63.158 8.23 0.00 0.00 3.93
717 732 2.658593 CCGCGAGTTCCATAGCCG 60.659 66.667 8.23 0.00 0.00 5.52
718 733 2.411701 CGCGAGTTCCATAGCCGA 59.588 61.111 0.00 0.00 0.00 5.54
719 734 1.658717 CGCGAGTTCCATAGCCGAG 60.659 63.158 0.00 0.00 0.00 4.63
720 735 1.300233 GCGAGTTCCATAGCCGAGG 60.300 63.158 0.00 0.00 0.00 4.63
721 736 1.300233 CGAGTTCCATAGCCGAGGC 60.300 63.158 5.89 5.89 42.33 4.70
804 819 2.548480 GCAGCGTTGTTTAACTCCTTCT 59.452 45.455 0.00 0.00 34.60 2.85
865 880 7.097192 ACACACTTCATACGATGTATCTGTTT 58.903 34.615 0.00 0.00 0.00 2.83
901 916 1.277842 TCGGCTAACTCAATTCTGCCA 59.722 47.619 0.00 0.00 39.00 4.92
1026 1052 1.550976 GGGAGTCGACAGATGGAACTT 59.449 52.381 19.50 0.00 0.00 2.66
1226 1252 9.219603 CCTTCACTGTATTGTTAGATTTCTCAA 57.780 33.333 0.00 0.00 0.00 3.02
1307 1333 3.308866 AGACGTGTTTTAGTGTGCTTGTC 59.691 43.478 0.00 0.00 0.00 3.18
1464 1495 8.778358 CAAAGGTCACTCTTTATATATTCAGCC 58.222 37.037 0.00 0.00 35.44 4.85
1617 1649 5.715434 AGAAGAAGTAGAGTCACTCAACC 57.285 43.478 7.77 0.00 32.06 3.77
1645 1677 2.559698 TGATTTCCGAAAGCTCACCA 57.440 45.000 10.31 0.00 0.00 4.17
1739 1772 6.686630 TGTTATCGTTTCTTTTGCATTCCAT 58.313 32.000 0.00 0.00 0.00 3.41
2034 2072 7.039784 TGGAGATATGGTTTTTGGAAGTTGAAG 60.040 37.037 0.00 0.00 0.00 3.02
2282 2320 5.187772 CCATCAGCCACTTATGCTATACCTA 59.812 44.000 0.00 0.00 36.81 3.08
2295 2333 9.976511 TTATGCTATACCTACATTAACACACTC 57.023 33.333 0.00 0.00 0.00 3.51
2802 2947 3.780804 TTGAACCTTTACCTGCTAGCA 57.219 42.857 18.22 18.22 0.00 3.49
3493 3661 3.012518 GTGTAACCATGCTCTCATGCTT 58.987 45.455 0.03 0.00 46.69 3.91
3556 3725 9.617523 TCTTCTGCATCTGATTTATATGTTTGA 57.382 29.630 0.00 0.00 0.00 2.69
3589 3758 7.661536 AGATAGGTAAAAGTCTGCAGTGATA 57.338 36.000 14.67 0.00 0.00 2.15
3690 3859 6.766944 GGATGATGTGACTCAAGATGAAGAAT 59.233 38.462 0.00 0.00 0.00 2.40
3820 3994 4.121317 TGCTTTTCTTTTGTTCCATGCAG 58.879 39.130 0.00 0.00 0.00 4.41
3894 4068 9.045223 TCTATGTCCATTAATCATTCGTTTCAG 57.955 33.333 0.00 0.00 0.00 3.02
4095 4269 0.589708 AAACGCCGTGAAAGGTTAGC 59.410 50.000 0.00 0.00 0.00 3.09
4116 4290 3.438087 GCTCTTGCTGCAATCTCTTTACA 59.562 43.478 16.38 0.00 36.03 2.41
4118 4292 3.753272 TCTTGCTGCAATCTCTTTACACC 59.247 43.478 16.38 0.00 0.00 4.16
4119 4293 3.138884 TGCTGCAATCTCTTTACACCA 57.861 42.857 0.00 0.00 0.00 4.17
4120 4294 3.689347 TGCTGCAATCTCTTTACACCAT 58.311 40.909 0.00 0.00 0.00 3.55
4121 4295 3.691118 TGCTGCAATCTCTTTACACCATC 59.309 43.478 0.00 0.00 0.00 3.51
4144 4449 0.109086 AGTTCCGTCTGCATCGACAG 60.109 55.000 11.98 0.00 39.12 3.51
4157 4462 0.103755 TCGACAGGATGCTGCATCTC 59.896 55.000 33.94 24.74 42.53 2.75
4194 5259 2.054232 TCTCGCTTACCTGTAGAGGG 57.946 55.000 11.23 0.00 44.84 4.30
4216 5281 0.727398 GCAGTTACAGCAACCCGATC 59.273 55.000 0.00 0.00 37.93 3.69
4268 5337 8.472007 AGAACTTTCATATGGGTAACAAACAA 57.528 30.769 2.13 0.00 39.74 2.83
4269 5338 8.919145 AGAACTTTCATATGGGTAACAAACAAA 58.081 29.630 2.13 0.00 39.74 2.83
4270 5339 8.880878 AACTTTCATATGGGTAACAAACAAAC 57.119 30.769 2.13 0.00 39.74 2.93
4271 5340 8.012957 ACTTTCATATGGGTAACAAACAAACA 57.987 30.769 2.13 0.00 39.74 2.83
4395 5464 2.009774 CAACAAGGTCAGCGATAAGGG 58.990 52.381 0.00 0.00 0.00 3.95
4398 5467 2.304761 ACAAGGTCAGCGATAAGGGAAA 59.695 45.455 0.00 0.00 0.00 3.13
4421 5490 3.686726 GGAACAACCTGTATCTGCTTCTG 59.313 47.826 0.00 0.00 35.41 3.02
4434 5503 0.392595 GCTTCTGGTTTCTACCCCCG 60.393 60.000 0.00 0.00 44.35 5.73
4531 5600 1.299648 CCAAGAGGGGCGATCACAA 59.700 57.895 0.00 0.00 0.00 3.33
4535 5616 0.678048 AGAGGGGCGATCACAAAAGC 60.678 55.000 0.00 0.00 0.00 3.51
4553 5634 3.573772 CTCTTGCGCTGGGACGACA 62.574 63.158 9.73 0.00 34.06 4.35
4576 5657 0.809241 GCGTGATCTCTGCTTGAGGG 60.809 60.000 7.30 0.00 42.86 4.30
4577 5658 0.809241 CGTGATCTCTGCTTGAGGGC 60.809 60.000 7.30 0.00 42.86 5.19
4578 5659 0.251354 GTGATCTCTGCTTGAGGGCA 59.749 55.000 7.30 0.00 42.86 5.36
4579 5660 1.134159 GTGATCTCTGCTTGAGGGCAT 60.134 52.381 7.30 0.00 42.86 4.40
4838 5919 7.452880 TGATTAAGATTTTTGTGGACAGAGG 57.547 36.000 0.00 0.00 0.00 3.69
4954 6047 0.381801 AGCCAGTTTTGTGTTGCTCG 59.618 50.000 0.00 0.00 0.00 5.03
4963 6056 5.344933 AGTTTTGTGTTGCTCGTTTTTCTTC 59.655 36.000 0.00 0.00 0.00 2.87
4965 6058 4.695217 TGTGTTGCTCGTTTTTCTTCTT 57.305 36.364 0.00 0.00 0.00 2.52
4967 6060 5.465935 TGTGTTGCTCGTTTTTCTTCTTTT 58.534 33.333 0.00 0.00 0.00 2.27
4968 6061 5.344665 TGTGTTGCTCGTTTTTCTTCTTTTG 59.655 36.000 0.00 0.00 0.00 2.44
4969 6062 4.862018 TGTTGCTCGTTTTTCTTCTTTTGG 59.138 37.500 0.00 0.00 0.00 3.28
4971 6064 3.697045 TGCTCGTTTTTCTTCTTTTGGGA 59.303 39.130 0.00 0.00 0.00 4.37
4972 6065 4.340950 TGCTCGTTTTTCTTCTTTTGGGAT 59.659 37.500 0.00 0.00 0.00 3.85
4973 6066 5.163457 TGCTCGTTTTTCTTCTTTTGGGATT 60.163 36.000 0.00 0.00 0.00 3.01
4974 6067 5.753438 GCTCGTTTTTCTTCTTTTGGGATTT 59.247 36.000 0.00 0.00 0.00 2.17
4975 6068 6.257849 GCTCGTTTTTCTTCTTTTGGGATTTT 59.742 34.615 0.00 0.00 0.00 1.82
4976 6069 7.201609 GCTCGTTTTTCTTCTTTTGGGATTTTT 60.202 33.333 0.00 0.00 0.00 1.94
5006 6105 2.427095 GTGTGGCTCCTGTTTTTGTCTT 59.573 45.455 0.00 0.00 0.00 3.01
5007 6106 2.426738 TGTGGCTCCTGTTTTTGTCTTG 59.573 45.455 0.00 0.00 0.00 3.02
5068 6170 1.185618 TGCTCAGCTACGGACCTGTT 61.186 55.000 0.00 0.00 0.00 3.16
5069 6171 0.737715 GCTCAGCTACGGACCTGTTG 60.738 60.000 0.00 0.00 0.00 3.33
5070 6172 0.888619 CTCAGCTACGGACCTGTTGA 59.111 55.000 0.00 0.00 0.00 3.18
5071 6173 0.888619 TCAGCTACGGACCTGTTGAG 59.111 55.000 0.00 0.00 0.00 3.02
5072 6174 0.603569 CAGCTACGGACCTGTTGAGT 59.396 55.000 0.00 0.00 0.00 3.41
5073 6175 1.816835 CAGCTACGGACCTGTTGAGTA 59.183 52.381 0.00 0.00 0.00 2.59
5074 6176 2.427453 CAGCTACGGACCTGTTGAGTAT 59.573 50.000 0.00 0.00 0.00 2.12
5075 6177 3.630769 CAGCTACGGACCTGTTGAGTATA 59.369 47.826 0.00 0.00 0.00 1.47
5076 6178 3.884091 AGCTACGGACCTGTTGAGTATAG 59.116 47.826 0.00 0.00 0.00 1.31
5077 6179 3.631227 GCTACGGACCTGTTGAGTATAGT 59.369 47.826 0.00 0.00 0.00 2.12
5084 6186 3.769844 ACCTGTTGAGTATAGTCCAGTGG 59.230 47.826 1.40 1.40 0.00 4.00
5093 6195 5.778542 AGTATAGTCCAGTGGAGGTACAAT 58.221 41.667 13.61 2.86 29.39 2.71
5137 6239 4.335594 AGTTTTGTGTGTAGCTCCTGTTTC 59.664 41.667 0.00 0.00 0.00 2.78
5153 6255 4.946157 CCTGTTTCTATCTGCAGTTGGATT 59.054 41.667 14.67 0.00 0.00 3.01
5156 6258 7.201679 CCTGTTTCTATCTGCAGTTGGATTAAG 60.202 40.741 14.67 9.76 0.00 1.85
5163 6265 4.696877 TCTGCAGTTGGATTAAGTGATGTG 59.303 41.667 14.67 0.00 41.35 3.21
5164 6266 4.397420 TGCAGTTGGATTAAGTGATGTGT 58.603 39.130 0.00 0.00 41.35 3.72
5165 6267 5.555966 TGCAGTTGGATTAAGTGATGTGTA 58.444 37.500 0.00 0.00 41.35 2.90
5166 6268 6.179756 TGCAGTTGGATTAAGTGATGTGTAT 58.820 36.000 0.00 0.00 41.35 2.29
5167 6269 6.658816 TGCAGTTGGATTAAGTGATGTGTATT 59.341 34.615 0.00 0.00 41.35 1.89
5168 6270 6.968904 GCAGTTGGATTAAGTGATGTGTATTG 59.031 38.462 0.00 0.00 41.35 1.90
5169 6271 7.362056 GCAGTTGGATTAAGTGATGTGTATTGT 60.362 37.037 0.00 0.00 41.35 2.71
5170 6272 8.177663 CAGTTGGATTAAGTGATGTGTATTGTC 58.822 37.037 0.00 0.00 41.35 3.18
5171 6273 6.902224 TGGATTAAGTGATGTGTATTGTCG 57.098 37.500 0.00 0.00 0.00 4.35
5172 6274 5.815222 TGGATTAAGTGATGTGTATTGTCGG 59.185 40.000 0.00 0.00 0.00 4.79
5173 6275 6.046593 GGATTAAGTGATGTGTATTGTCGGA 58.953 40.000 0.00 0.00 0.00 4.55
5174 6276 6.201044 GGATTAAGTGATGTGTATTGTCGGAG 59.799 42.308 0.00 0.00 0.00 4.63
5175 6277 4.537135 AAGTGATGTGTATTGTCGGAGT 57.463 40.909 0.00 0.00 0.00 3.85
5176 6278 5.654603 AAGTGATGTGTATTGTCGGAGTA 57.345 39.130 0.00 0.00 0.00 2.59
5177 6279 5.854010 AGTGATGTGTATTGTCGGAGTAT 57.146 39.130 0.00 0.00 0.00 2.12
5178 6280 6.222038 AGTGATGTGTATTGTCGGAGTATT 57.778 37.500 0.00 0.00 0.00 1.89
5179 6281 6.042777 AGTGATGTGTATTGTCGGAGTATTG 58.957 40.000 0.00 0.00 0.00 1.90
5180 6282 5.234329 GTGATGTGTATTGTCGGAGTATTGG 59.766 44.000 0.00 0.00 0.00 3.16
5181 6283 4.131649 TGTGTATTGTCGGAGTATTGGG 57.868 45.455 0.00 0.00 0.00 4.12
5182 6284 2.870411 GTGTATTGTCGGAGTATTGGGC 59.130 50.000 0.00 0.00 0.00 5.36
5183 6285 2.158871 TGTATTGTCGGAGTATTGGGCC 60.159 50.000 0.00 0.00 0.00 5.80
5184 6286 0.916086 ATTGTCGGAGTATTGGGCCA 59.084 50.000 0.00 0.00 0.00 5.36
5185 6287 0.035820 TTGTCGGAGTATTGGGCCAC 60.036 55.000 5.23 0.00 0.00 5.01
5186 6288 1.520787 GTCGGAGTATTGGGCCACG 60.521 63.158 5.23 5.51 0.00 4.94
5187 6289 2.203015 CGGAGTATTGGGCCACGG 60.203 66.667 5.23 0.00 0.00 4.94
5188 6290 2.192175 GGAGTATTGGGCCACGGG 59.808 66.667 5.23 0.00 0.00 5.28
5189 6291 2.676265 GGAGTATTGGGCCACGGGT 61.676 63.158 5.23 0.00 0.00 5.28
5190 6292 1.339644 GGAGTATTGGGCCACGGGTA 61.340 60.000 5.23 0.00 0.00 3.69
5191 6293 0.106149 GAGTATTGGGCCACGGGTAG 59.894 60.000 5.23 0.00 0.00 3.18
5192 6294 1.147600 GTATTGGGCCACGGGTAGG 59.852 63.158 5.23 0.00 0.00 3.18
5204 6306 3.208335 GGTAGGCTGACCCGAGTC 58.792 66.667 0.00 0.00 43.83 3.36
5205 6307 2.424733 GGTAGGCTGACCCGAGTCC 61.425 68.421 0.00 0.00 42.81 3.85
5206 6308 1.380112 GTAGGCTGACCCGAGTCCT 60.380 63.158 0.00 0.00 42.81 3.85
5207 6309 0.106819 GTAGGCTGACCCGAGTCCTA 60.107 60.000 0.00 0.00 42.81 2.94
5208 6310 0.183014 TAGGCTGACCCGAGTCCTAG 59.817 60.000 0.00 0.00 42.81 3.02
5209 6311 2.128507 GGCTGACCCGAGTCCTAGG 61.129 68.421 0.82 0.82 42.81 3.02
5210 6312 1.076923 GCTGACCCGAGTCCTAGGA 60.077 63.158 7.62 7.62 42.81 2.94
5211 6313 1.385756 GCTGACCCGAGTCCTAGGAC 61.386 65.000 31.29 31.29 42.81 3.85
5212 6314 0.752376 CTGACCCGAGTCCTAGGACC 60.752 65.000 33.81 24.30 45.59 4.46
5213 6315 1.212934 TGACCCGAGTCCTAGGACCT 61.213 60.000 33.81 22.52 45.59 3.85
5214 6316 0.033306 GACCCGAGTCCTAGGACCTT 60.033 60.000 33.81 19.76 45.59 3.50
5215 6317 0.412640 ACCCGAGTCCTAGGACCTTT 59.587 55.000 33.81 19.03 45.59 3.11
5216 6318 1.112950 CCCGAGTCCTAGGACCTTTC 58.887 60.000 33.81 24.41 45.59 2.62
5217 6319 1.618888 CCCGAGTCCTAGGACCTTTCA 60.619 57.143 33.81 0.00 45.59 2.69
5218 6320 2.176889 CCGAGTCCTAGGACCTTTCAA 58.823 52.381 33.81 0.00 45.59 2.69
5219 6321 2.166664 CCGAGTCCTAGGACCTTTCAAG 59.833 54.545 33.81 17.09 45.59 3.02
5220 6322 3.090037 CGAGTCCTAGGACCTTTCAAGA 58.910 50.000 33.81 0.00 45.59 3.02
5221 6323 3.119424 CGAGTCCTAGGACCTTTCAAGAC 60.119 52.174 33.81 9.83 45.59 3.01
5222 6324 3.833070 GAGTCCTAGGACCTTTCAAGACA 59.167 47.826 33.81 0.00 45.59 3.41
5223 6325 4.430441 AGTCCTAGGACCTTTCAAGACAT 58.570 43.478 33.81 11.69 45.59 3.06
5224 6326 4.468153 AGTCCTAGGACCTTTCAAGACATC 59.532 45.833 33.81 8.11 45.59 3.06
5225 6327 3.447586 TCCTAGGACCTTTCAAGACATCG 59.552 47.826 7.62 0.00 0.00 3.84
5226 6328 2.770164 AGGACCTTTCAAGACATCGG 57.230 50.000 0.00 0.00 0.00 4.18
5227 6329 1.279271 AGGACCTTTCAAGACATCGGG 59.721 52.381 0.00 0.00 0.00 5.14
5228 6330 1.679032 GGACCTTTCAAGACATCGGGG 60.679 57.143 0.00 0.00 0.00 5.73
5229 6331 0.322546 ACCTTTCAAGACATCGGGGC 60.323 55.000 0.00 0.00 0.00 5.80
5230 6332 0.322456 CCTTTCAAGACATCGGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
5231 6333 1.089920 CTTTCAAGACATCGGGGCAG 58.910 55.000 0.00 0.00 0.00 4.85
5232 6334 0.322456 TTTCAAGACATCGGGGCAGG 60.322 55.000 0.00 0.00 0.00 4.85
5233 6335 2.819984 TTCAAGACATCGGGGCAGGC 62.820 60.000 0.00 0.00 0.00 4.85
5234 6336 4.115199 AAGACATCGGGGCAGGCC 62.115 66.667 3.77 3.77 0.00 5.19
5259 6361 4.043100 TCGAGCCGAGTCCCAGGA 62.043 66.667 0.00 0.00 0.00 3.86
5260 6362 3.522731 CGAGCCGAGTCCCAGGAG 61.523 72.222 0.00 0.00 0.00 3.69
5261 6363 3.844090 GAGCCGAGTCCCAGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
5264 6366 3.827898 CCGAGTCCCAGGAGCGAC 61.828 72.222 9.72 0.00 0.00 5.19
5265 6367 2.752238 CGAGTCCCAGGAGCGACT 60.752 66.667 3.45 0.00 42.02 4.18
5266 6368 3.202467 GAGTCCCAGGAGCGACTC 58.798 66.667 8.20 8.20 45.91 3.36
5267 6369 2.767352 AGTCCCAGGAGCGACTCT 59.233 61.111 6.78 0.00 34.15 3.24
5268 6370 2.000164 AGTCCCAGGAGCGACTCTA 59.000 57.895 6.78 0.00 34.15 2.43
5269 6371 0.331954 AGTCCCAGGAGCGACTCTAA 59.668 55.000 6.78 0.00 34.15 2.10
5270 6372 0.741915 GTCCCAGGAGCGACTCTAAG 59.258 60.000 6.78 0.00 0.00 2.18
5271 6373 0.624254 TCCCAGGAGCGACTCTAAGA 59.376 55.000 6.78 0.00 0.00 2.10
5272 6374 0.741915 CCCAGGAGCGACTCTAAGAC 59.258 60.000 6.78 0.00 0.00 3.01
5273 6375 1.464734 CCAGGAGCGACTCTAAGACA 58.535 55.000 6.78 0.00 0.00 3.41
5274 6376 1.819288 CCAGGAGCGACTCTAAGACAA 59.181 52.381 6.78 0.00 0.00 3.18
5275 6377 2.159310 CCAGGAGCGACTCTAAGACAAG 60.159 54.545 6.78 0.00 0.00 3.16
5276 6378 1.474879 AGGAGCGACTCTAAGACAAGC 59.525 52.381 6.78 0.00 0.00 4.01
5277 6379 1.470112 GGAGCGACTCTAAGACAAGCC 60.470 57.143 6.78 0.00 0.00 4.35
5278 6380 0.171455 AGCGACTCTAAGACAAGCCG 59.829 55.000 0.00 0.00 0.00 5.52
5279 6381 0.170561 GCGACTCTAAGACAAGCCGA 59.829 55.000 0.00 0.00 0.00 5.54
5280 6382 1.795889 GCGACTCTAAGACAAGCCGAG 60.796 57.143 0.00 0.00 0.00 4.63
5281 6383 1.469308 CGACTCTAAGACAAGCCGAGT 59.531 52.381 0.00 0.00 37.63 4.18
5282 6384 2.476519 CGACTCTAAGACAAGCCGAGTC 60.477 54.545 7.47 7.47 44.28 3.36
5283 6385 1.819903 ACTCTAAGACAAGCCGAGTCC 59.180 52.381 0.00 0.00 36.68 3.85
5284 6386 1.135333 CTCTAAGACAAGCCGAGTCCC 59.865 57.143 0.00 0.00 36.68 4.46
5285 6387 0.895530 CTAAGACAAGCCGAGTCCCA 59.104 55.000 0.00 0.00 36.68 4.37
5286 6388 0.895530 TAAGACAAGCCGAGTCCCAG 59.104 55.000 0.00 0.00 36.68 4.45
5287 6389 0.832135 AAGACAAGCCGAGTCCCAGA 60.832 55.000 0.00 0.00 36.68 3.86
5288 6390 1.079750 GACAAGCCGAGTCCCAGAC 60.080 63.158 0.00 0.00 0.00 3.51
5289 6391 2.125912 CAAGCCGAGTCCCAGACG 60.126 66.667 0.00 0.00 37.67 4.18
5294 6396 4.477975 CGAGTCCCAGACGGCGAC 62.478 72.222 16.62 7.87 37.39 5.19
5295 6397 3.063084 GAGTCCCAGACGGCGACT 61.063 66.667 16.62 10.89 42.28 4.18
5296 6398 3.053849 GAGTCCCAGACGGCGACTC 62.054 68.421 16.62 11.41 44.87 3.36
5297 6399 4.131088 GTCCCAGACGGCGACTCC 62.131 72.222 16.62 0.00 32.60 3.85
5306 6408 2.507324 GGCGACTCCGAGACAAGC 60.507 66.667 1.33 1.94 38.22 4.01
5307 6409 2.507324 GCGACTCCGAGACAAGCC 60.507 66.667 1.33 0.00 38.22 4.35
5308 6410 2.202492 CGACTCCGAGACAAGCCG 60.202 66.667 1.33 0.00 38.22 5.52
5309 6411 2.687805 CGACTCCGAGACAAGCCGA 61.688 63.158 1.33 0.00 38.22 5.54
5310 6412 1.153997 GACTCCGAGACAAGCCGAC 60.154 63.158 1.33 0.00 0.00 4.79
5311 6413 1.587933 GACTCCGAGACAAGCCGACT 61.588 60.000 1.33 0.00 0.00 4.18
5312 6414 1.137825 CTCCGAGACAAGCCGACTC 59.862 63.158 0.00 0.00 33.64 3.36
5313 6415 2.182030 CCGAGACAAGCCGACTCC 59.818 66.667 0.00 0.00 33.43 3.85
5314 6416 2.202492 CGAGACAAGCCGACTCCG 60.202 66.667 0.00 0.00 33.43 4.63
5315 6417 2.687805 CGAGACAAGCCGACTCCGA 61.688 63.158 0.00 0.00 38.22 4.55
5316 6418 1.137825 GAGACAAGCCGACTCCGAG 59.862 63.158 0.00 0.00 38.22 4.63
5317 6419 2.507324 GACAAGCCGACTCCGAGC 60.507 66.667 0.00 0.00 38.22 5.03
5318 6420 2.992114 ACAAGCCGACTCCGAGCT 60.992 61.111 0.00 0.00 41.61 4.09
5319 6421 2.507992 CAAGCCGACTCCGAGCTG 60.508 66.667 0.00 0.00 40.41 4.24
5320 6422 3.764466 AAGCCGACTCCGAGCTGG 61.764 66.667 0.00 0.00 40.41 4.85
5322 6424 4.803426 GCCGACTCCGAGCTGGTG 62.803 72.222 0.00 0.00 39.52 4.17
5323 6425 3.062466 CCGACTCCGAGCTGGTGA 61.062 66.667 0.00 0.00 39.52 4.02
5324 6426 2.179517 CGACTCCGAGCTGGTGAC 59.820 66.667 0.00 0.00 39.52 3.67
5325 6427 2.574399 GACTCCGAGCTGGTGACC 59.426 66.667 0.00 0.00 39.52 4.02
5326 6428 1.979693 GACTCCGAGCTGGTGACCT 60.980 63.158 2.11 0.00 39.52 3.85
5327 6429 1.939769 GACTCCGAGCTGGTGACCTC 61.940 65.000 2.11 0.00 39.52 3.85
5328 6430 2.680352 TCCGAGCTGGTGACCTCC 60.680 66.667 2.11 0.00 39.52 4.30
5329 6431 2.997315 CCGAGCTGGTGACCTCCA 60.997 66.667 2.11 0.00 36.00 3.86
5342 6444 4.988744 CTCCAGAGAGGCCGACTA 57.011 61.111 0.00 0.00 36.39 2.59
5343 6445 3.430473 CTCCAGAGAGGCCGACTAT 57.570 57.895 0.00 0.00 36.39 2.12
5344 6446 0.958091 CTCCAGAGAGGCCGACTATG 59.042 60.000 16.71 16.71 36.39 2.23
5345 6447 0.468214 TCCAGAGAGGCCGACTATGG 60.468 60.000 28.38 28.38 44.89 2.74
5346 6448 0.468214 CCAGAGAGGCCGACTATGGA 60.468 60.000 29.58 0.00 45.95 3.41
5347 6449 0.958091 CAGAGAGGCCGACTATGGAG 59.042 60.000 16.14 0.00 0.00 3.86
5348 6450 0.847373 AGAGAGGCCGACTATGGAGA 59.153 55.000 0.00 0.00 0.00 3.71
5349 6451 1.202879 AGAGAGGCCGACTATGGAGAG 60.203 57.143 0.00 0.00 0.00 3.20
5350 6452 0.553819 AGAGGCCGACTATGGAGAGT 59.446 55.000 0.00 0.00 0.00 3.24
5351 6453 0.955905 GAGGCCGACTATGGAGAGTC 59.044 60.000 0.00 0.00 42.13 3.36
5356 6458 2.042800 GACTATGGAGAGTCGGCCC 58.957 63.158 0.00 0.00 36.76 5.80
5357 6459 0.755698 GACTATGGAGAGTCGGCCCA 60.756 60.000 0.00 4.78 36.76 5.36
5358 6460 0.105453 ACTATGGAGAGTCGGCCCAT 60.105 55.000 15.62 15.62 42.75 4.00
5359 6461 0.319728 CTATGGAGAGTCGGCCCATG 59.680 60.000 18.75 9.45 40.59 3.66
5360 6462 0.105709 TATGGAGAGTCGGCCCATGA 60.106 55.000 18.75 0.00 40.59 3.07
5361 6463 1.690219 ATGGAGAGTCGGCCCATGAC 61.690 60.000 12.07 0.00 39.08 3.06
5365 6467 2.039624 AGTCGGCCCATGACTCCT 59.960 61.111 6.00 0.00 42.93 3.69
5366 6468 2.060980 AGTCGGCCCATGACTCCTC 61.061 63.158 6.00 0.00 42.93 3.71
5367 6469 2.764128 TCGGCCCATGACTCCTCC 60.764 66.667 0.00 0.00 0.00 4.30
5368 6470 3.866582 CGGCCCATGACTCCTCCC 61.867 72.222 0.00 0.00 0.00 4.30
5369 6471 2.367512 GGCCCATGACTCCTCCCT 60.368 66.667 0.00 0.00 0.00 4.20
5370 6472 2.447714 GGCCCATGACTCCTCCCTC 61.448 68.421 0.00 0.00 0.00 4.30
5371 6473 2.801631 GCCCATGACTCCTCCCTCG 61.802 68.421 0.00 0.00 0.00 4.63
5372 6474 1.381872 CCCATGACTCCTCCCTCGT 60.382 63.158 0.00 0.00 0.00 4.18
5373 6475 1.395826 CCCATGACTCCTCCCTCGTC 61.396 65.000 0.00 0.00 0.00 4.20
5374 6476 1.395826 CCATGACTCCTCCCTCGTCC 61.396 65.000 0.00 0.00 0.00 4.79
5375 6477 1.075896 ATGACTCCTCCCTCGTCCC 60.076 63.158 0.00 0.00 0.00 4.46
5376 6478 2.829458 GACTCCTCCCTCGTCCCG 60.829 72.222 0.00 0.00 0.00 5.14
5377 6479 3.336568 ACTCCTCCCTCGTCCCGA 61.337 66.667 0.00 0.00 0.00 5.14
5386 6488 2.815211 TCGTCCCGAGGTACGACG 60.815 66.667 5.84 12.31 42.74 5.12
5387 6489 3.121030 CGTCCCGAGGTACGACGT 61.121 66.667 5.52 5.52 45.77 4.34
5388 6490 2.482374 GTCCCGAGGTACGACGTG 59.518 66.667 11.56 0.00 45.77 4.49
5389 6491 2.747460 TCCCGAGGTACGACGTGG 60.747 66.667 11.56 2.21 45.77 4.94
5390 6492 3.818787 CCCGAGGTACGACGTGGG 61.819 72.222 11.56 8.43 45.77 4.61
5391 6493 3.818787 CCGAGGTACGACGTGGGG 61.819 72.222 11.56 0.58 45.77 4.96
5392 6494 3.058160 CGAGGTACGACGTGGGGT 61.058 66.667 11.56 0.00 45.77 4.95
5393 6495 1.745115 CGAGGTACGACGTGGGGTA 60.745 63.158 11.56 0.00 45.77 3.69
5394 6496 1.803289 GAGGTACGACGTGGGGTAC 59.197 63.158 11.56 7.47 38.58 3.34
5403 6505 4.747529 GTGGGGTACGGTCACGGC 62.748 72.222 0.00 0.00 46.48 5.68
5435 6537 2.511600 CCTGCTTACGAAGGGCCG 60.512 66.667 0.00 0.00 31.55 6.13
5436 6538 2.511600 CTGCTTACGAAGGGCCGG 60.512 66.667 0.00 0.00 0.00 6.13
5437 6539 4.770874 TGCTTACGAAGGGCCGGC 62.771 66.667 21.18 21.18 0.00 6.13
5438 6540 4.770874 GCTTACGAAGGGCCGGCA 62.771 66.667 30.85 1.46 0.00 5.69
5439 6541 2.189521 CTTACGAAGGGCCGGCAT 59.810 61.111 30.85 14.02 0.00 4.40
5440 6542 2.124901 TTACGAAGGGCCGGCATG 60.125 61.111 30.85 14.70 0.00 4.06
5441 6543 3.690685 TTACGAAGGGCCGGCATGG 62.691 63.158 30.85 17.08 42.50 3.66
5450 6552 2.584064 CCGGCATGGCTACAGTGA 59.416 61.111 18.09 0.00 0.00 3.41
5451 6553 1.522355 CCGGCATGGCTACAGTGAG 60.522 63.158 18.09 0.00 0.00 3.51
5452 6554 2.176273 CGGCATGGCTACAGTGAGC 61.176 63.158 18.09 1.28 42.05 4.26
5459 6561 3.165559 GCTACAGTGAGCCGTATCG 57.834 57.895 0.00 0.00 36.38 2.92
5460 6562 0.935366 GCTACAGTGAGCCGTATCGC 60.935 60.000 0.00 0.00 36.38 4.58
5461 6563 0.663688 CTACAGTGAGCCGTATCGCT 59.336 55.000 0.00 0.00 43.42 4.93
5463 6565 2.808315 AGTGAGCCGTATCGCTGG 59.192 61.111 0.00 0.00 39.87 4.85
5464 6566 1.753078 AGTGAGCCGTATCGCTGGA 60.753 57.895 0.00 0.00 39.87 3.86
5465 6567 1.141019 GTGAGCCGTATCGCTGGAA 59.859 57.895 0.00 0.00 39.87 3.53
5466 6568 0.872021 GTGAGCCGTATCGCTGGAAG 60.872 60.000 0.00 0.00 39.87 3.46
5467 6569 1.035385 TGAGCCGTATCGCTGGAAGA 61.035 55.000 0.00 0.00 39.87 2.87
5468 6570 0.315568 GAGCCGTATCGCTGGAAGAT 59.684 55.000 0.00 0.00 39.87 2.40
5469 6571 0.315568 AGCCGTATCGCTGGAAGATC 59.684 55.000 0.00 0.00 37.82 2.75
5470 6572 0.315568 GCCGTATCGCTGGAAGATCT 59.684 55.000 0.00 0.00 34.07 2.75
5471 6573 1.667467 GCCGTATCGCTGGAAGATCTC 60.667 57.143 0.00 0.00 34.07 2.75
5472 6574 1.068194 CCGTATCGCTGGAAGATCTCC 60.068 57.143 0.00 0.00 45.64 3.71
5479 6581 2.731374 GGAAGATCTCCGGCGAGG 59.269 66.667 9.30 0.00 42.97 4.63
5480 6582 2.731374 GAAGATCTCCGGCGAGGG 59.269 66.667 9.30 0.00 41.52 4.30
5481 6583 2.840102 AAGATCTCCGGCGAGGGG 60.840 66.667 9.30 0.00 43.85 4.79
5501 6603 2.260434 GCACTGTTGCCATGCCTG 59.740 61.111 0.00 0.00 43.66 4.85
5502 6604 2.260434 CACTGTTGCCATGCCTGC 59.740 61.111 0.00 0.00 0.00 4.85
5503 6605 2.993264 ACTGTTGCCATGCCTGCC 60.993 61.111 0.00 0.00 0.00 4.85
5504 6606 3.766691 CTGTTGCCATGCCTGCCC 61.767 66.667 0.00 0.00 0.00 5.36
5505 6607 4.304413 TGTTGCCATGCCTGCCCT 62.304 61.111 0.00 0.00 0.00 5.19
5506 6608 3.766691 GTTGCCATGCCTGCCCTG 61.767 66.667 0.00 0.00 0.00 4.45
5507 6609 3.982111 TTGCCATGCCTGCCCTGA 61.982 61.111 0.00 0.00 0.00 3.86
5508 6610 4.746309 TGCCATGCCTGCCCTGAC 62.746 66.667 0.00 0.00 0.00 3.51
5510 6612 3.736224 CCATGCCTGCCCTGACCT 61.736 66.667 0.00 0.00 0.00 3.85
5511 6613 2.124403 CATGCCTGCCCTGACCTC 60.124 66.667 0.00 0.00 0.00 3.85
5512 6614 2.611800 ATGCCTGCCCTGACCTCA 60.612 61.111 0.00 0.00 0.00 3.86
5513 6615 2.677289 ATGCCTGCCCTGACCTCAG 61.677 63.158 0.00 0.00 43.40 3.35
5514 6616 4.792804 GCCTGCCCTGACCTCAGC 62.793 72.222 0.00 0.00 42.47 4.26
5515 6617 3.007920 CCTGCCCTGACCTCAGCT 61.008 66.667 0.00 0.00 42.47 4.24
5516 6618 1.687146 CCTGCCCTGACCTCAGCTA 60.687 63.158 0.00 0.00 42.47 3.32
5517 6619 1.519719 CTGCCCTGACCTCAGCTAC 59.480 63.158 0.00 0.00 42.47 3.58
5518 6620 1.229177 TGCCCTGACCTCAGCTACA 60.229 57.895 0.00 0.00 42.47 2.74
5519 6621 1.260538 TGCCCTGACCTCAGCTACAG 61.261 60.000 0.00 0.00 42.47 2.74
5520 6622 1.261238 GCCCTGACCTCAGCTACAGT 61.261 60.000 0.00 0.00 42.47 3.55
5521 6623 0.534412 CCCTGACCTCAGCTACAGTG 59.466 60.000 0.00 0.00 42.47 3.66
5522 6624 0.108424 CCTGACCTCAGCTACAGTGC 60.108 60.000 0.00 0.00 42.47 4.40
5523 6625 0.457509 CTGACCTCAGCTACAGTGCG 60.458 60.000 0.00 0.00 37.15 5.34
5524 6626 1.807573 GACCTCAGCTACAGTGCGC 60.808 63.158 0.00 0.00 38.13 6.09
5525 6627 2.510238 CCTCAGCTACAGTGCGCC 60.510 66.667 4.18 0.00 38.13 6.53
5526 6628 2.262603 CTCAGCTACAGTGCGCCA 59.737 61.111 4.18 0.00 38.13 5.69
5527 6629 2.048222 TCAGCTACAGTGCGCCAC 60.048 61.111 4.18 3.02 38.13 5.01
5528 6630 3.481903 CAGCTACAGTGCGCCACG 61.482 66.667 4.18 0.00 39.64 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.738645 AAGGCCTAAATTTGTAATGAGAGTAG 57.261 34.615 5.16 0.00 0.00 2.57
9 10 5.258051 ACGGAAGGCCTAAATTTGTAATGA 58.742 37.500 5.16 0.00 0.00 2.57
10 11 5.576447 ACGGAAGGCCTAAATTTGTAATG 57.424 39.130 5.16 0.00 0.00 1.90
24 25 2.552031 GTGGAGAGAAATACGGAAGGC 58.448 52.381 0.00 0.00 0.00 4.35
190 201 2.044620 GGAGAGGGGTTGGGGGAT 59.955 66.667 0.00 0.00 0.00 3.85
476 488 4.783450 GCTCGGAGCATCGAAAGTAAAATG 60.783 45.833 24.42 0.00 41.89 2.32
603 615 3.066203 CCTTTTGTCACCACTGGTACAAC 59.934 47.826 16.55 10.05 38.70 3.32
701 716 1.658717 CTCGGCTATGGAACTCGCG 60.659 63.158 0.00 0.00 0.00 5.87
721 736 1.987807 ATCACTGGATTGCCCTCGGG 61.988 60.000 0.00 0.00 35.38 5.14
787 802 3.875134 ACACCAGAAGGAGTTAAACAACG 59.125 43.478 0.00 0.00 34.90 4.10
804 819 3.351740 TCTTTTGACTGAAGCAACACCA 58.648 40.909 0.00 0.00 0.00 4.17
865 880 1.610624 GCCGAAGATCAAACAGTGGGA 60.611 52.381 0.00 0.00 0.00 4.37
901 916 0.036388 ACGCATCGAAGTTGGGACAT 60.036 50.000 8.38 0.00 39.30 3.06
1026 1052 7.669089 TGGATATCCAGTGTTTATGTAGTGA 57.331 36.000 20.98 0.00 42.01 3.41
1226 1252 9.543231 TCTTATATTTATGAACGGAGGGAGTAT 57.457 33.333 0.00 0.00 0.00 2.12
1307 1333 7.657761 GGACTACATATGGACTAAAATGAGTGG 59.342 40.741 7.80 0.00 0.00 4.00
1602 1634 2.832129 TCCCATGGTTGAGTGACTCTAC 59.168 50.000 16.95 16.95 35.97 2.59
1617 1649 3.004106 GCTTTCGGAAATCATCTCCCATG 59.996 47.826 3.24 0.00 0.00 3.66
1739 1772 5.925397 CCTGCACATTAACAACAAATAAGCA 59.075 36.000 0.00 0.00 0.00 3.91
1990 2023 4.828939 TCTCCAAAGTACTTACGTTCCTCA 59.171 41.667 8.92 0.00 0.00 3.86
2282 2320 2.106511 AGCCAGTGGAGTGTGTTAATGT 59.893 45.455 15.20 0.00 0.00 2.71
2295 2333 3.119849 CGTGGAAGAAAAATAGCCAGTGG 60.120 47.826 4.20 4.20 0.00 4.00
2396 2434 5.859114 GCCGATCACTAATAGTATGACACTG 59.141 44.000 0.00 0.00 38.24 3.66
2404 2442 8.117813 TCATACAATGCCGATCACTAATAGTA 57.882 34.615 0.00 0.00 0.00 1.82
2630 2775 0.534652 CTAGTACTCCCTCCGTCCCG 60.535 65.000 0.00 0.00 0.00 5.14
2713 2858 5.741388 AGAATCCATTAAGAACATCGCAC 57.259 39.130 0.00 0.00 0.00 5.34
2802 2947 5.493133 TGTATCGTTGAAGCAACTGTTTT 57.507 34.783 8.46 0.00 41.62 2.43
3391 3559 5.129485 TCTTGCCAAACAACCTGGAAATAAA 59.871 36.000 0.00 0.00 35.85 1.40
3392 3560 4.651503 TCTTGCCAAACAACCTGGAAATAA 59.348 37.500 0.00 0.00 35.85 1.40
3393 3561 4.038642 GTCTTGCCAAACAACCTGGAAATA 59.961 41.667 0.00 0.00 35.85 1.40
3394 3562 3.037549 TCTTGCCAAACAACCTGGAAAT 58.962 40.909 0.00 0.00 35.85 2.17
3493 3661 3.957497 AGTGGGTTTTACATGAAACAGCA 59.043 39.130 0.00 0.00 40.44 4.41
3556 3725 7.631811 GCAGACTTTTACCTATCTAGCTGAACT 60.632 40.741 0.00 0.00 0.00 3.01
3589 3758 4.958509 TCAATCCAATTGTGCATTGTGTT 58.041 34.783 15.99 0.00 40.87 3.32
3594 3763 7.931578 AAATTGATCAATCCAATTGTGCATT 57.068 28.000 20.95 4.77 41.71 3.56
3861 4035 9.717942 GAATGATTAATGGACATAGAGCTTAGT 57.282 33.333 0.00 0.00 0.00 2.24
3862 4036 8.867935 CGAATGATTAATGGACATAGAGCTTAG 58.132 37.037 0.00 0.00 0.00 2.18
3894 4068 6.793492 AGATGAGACAAAGAAAACTAGCAC 57.207 37.500 0.00 0.00 0.00 4.40
3924 4098 1.594331 AAGCGAACCAAGTTCCAGAC 58.406 50.000 2.06 0.00 39.14 3.51
4006 4180 3.424703 TGAAATGCTTTCTTGGGAGAGG 58.575 45.455 9.17 0.00 40.32 3.69
4095 4269 4.967437 GTGTAAAGAGATTGCAGCAAGAG 58.033 43.478 14.47 0.00 34.08 2.85
4113 4287 3.442625 CAGACGGAACTACTGATGGTGTA 59.557 47.826 0.00 0.00 32.79 2.90
4114 4288 2.231478 CAGACGGAACTACTGATGGTGT 59.769 50.000 0.00 0.00 32.79 4.16
4116 4290 1.204941 GCAGACGGAACTACTGATGGT 59.795 52.381 0.00 0.00 32.79 3.55
4118 4292 2.654749 TGCAGACGGAACTACTGATG 57.345 50.000 0.00 0.00 32.79 3.07
4119 4293 2.223595 CGATGCAGACGGAACTACTGAT 60.224 50.000 7.98 0.00 32.79 2.90
4120 4294 1.132453 CGATGCAGACGGAACTACTGA 59.868 52.381 7.98 0.00 32.79 3.41
4121 4295 1.132453 TCGATGCAGACGGAACTACTG 59.868 52.381 14.33 0.00 33.78 2.74
4144 4449 1.497223 GCACTCGAGATGCAGCATCC 61.497 60.000 28.57 19.40 41.36 3.51
4157 4462 4.780324 GCGAGAAACAGAATATTGCACTCG 60.780 45.833 0.00 0.00 44.45 4.18
4194 5259 1.866925 GGGTTGCTGTAACTGCGTC 59.133 57.895 8.49 0.00 39.31 5.19
4268 5337 3.558931 TTGACAGATCACACACCTGTT 57.441 42.857 0.00 0.00 40.80 3.16
4269 5338 3.558931 TTTGACAGATCACACACCTGT 57.441 42.857 0.00 0.00 43.11 4.00
4270 5339 3.189910 CCATTTGACAGATCACACACCTG 59.810 47.826 0.00 0.00 33.38 4.00
4271 5340 3.072915 TCCATTTGACAGATCACACACCT 59.927 43.478 0.00 0.00 33.38 4.00
4395 5464 4.327680 AGCAGATACAGGTTGTTCCTTTC 58.672 43.478 0.00 0.00 45.67 2.62
4421 5490 3.013327 AGGCCGGGGGTAGAAACC 61.013 66.667 2.18 0.00 45.97 3.27
4434 5503 0.905357 TCCTGTCAGCTAAAGAGGCC 59.095 55.000 0.00 0.00 0.00 5.19
4484 5553 0.667993 CGGGAACTTCAGCAAAGCAA 59.332 50.000 0.00 0.00 38.67 3.91
4521 5590 1.730446 GCAAGAGCTTTTGTGATCGCC 60.730 52.381 17.43 0.00 37.91 5.54
4522 5591 1.611043 GCAAGAGCTTTTGTGATCGC 58.389 50.000 17.43 0.00 37.91 4.58
4523 5592 1.874562 CGCAAGAGCTTTTGTGATCG 58.125 50.000 22.42 11.59 40.17 3.69
4524 5593 1.198637 AGCGCAAGAGCTTTTGTGATC 59.801 47.619 28.88 15.09 46.80 2.92
4525 5594 1.068748 CAGCGCAAGAGCTTTTGTGAT 60.069 47.619 28.88 22.36 46.80 3.06
4526 5595 0.308684 CAGCGCAAGAGCTTTTGTGA 59.691 50.000 28.88 0.00 46.80 3.58
4527 5596 0.662374 CCAGCGCAAGAGCTTTTGTG 60.662 55.000 22.52 22.52 46.80 3.33
4528 5597 1.656441 CCAGCGCAAGAGCTTTTGT 59.344 52.632 17.43 0.00 46.80 2.83
4529 5598 1.080974 CCCAGCGCAAGAGCTTTTG 60.081 57.895 11.47 12.50 46.80 2.44
4531 5600 1.968540 GTCCCAGCGCAAGAGCTTT 60.969 57.895 11.47 0.00 46.80 3.51
4535 5616 2.811317 GTCGTCCCAGCGCAAGAG 60.811 66.667 11.47 0.00 43.02 2.85
4553 5634 1.405463 TCAAGCAGAGATCACGCGTAT 59.595 47.619 13.44 6.14 0.00 3.06
4676 5757 4.717313 AAACCTCCGGGAAGCGGC 62.717 66.667 0.00 0.00 36.25 6.53
4838 5919 6.868339 CAGGGTTGTAACAAATGAATCTTTCC 59.132 38.462 0.00 0.00 0.00 3.13
4976 6069 1.476085 CAGGAGCCACACACACAAAAA 59.524 47.619 0.00 0.00 0.00 1.94
5068 6170 4.228895 TGTACCTCCACTGGACTATACTCA 59.771 45.833 0.00 0.00 0.00 3.41
5069 6171 4.789807 TGTACCTCCACTGGACTATACTC 58.210 47.826 0.00 0.00 0.00 2.59
5070 6172 4.875578 TGTACCTCCACTGGACTATACT 57.124 45.455 0.00 0.00 0.00 2.12
5071 6173 6.481434 AATTGTACCTCCACTGGACTATAC 57.519 41.667 0.00 0.00 0.00 1.47
5072 6174 7.504926 AAAATTGTACCTCCACTGGACTATA 57.495 36.000 0.00 0.00 0.00 1.31
5073 6175 6.388619 AAAATTGTACCTCCACTGGACTAT 57.611 37.500 0.00 0.00 0.00 2.12
5074 6176 5.836024 AAAATTGTACCTCCACTGGACTA 57.164 39.130 0.00 0.00 0.00 2.59
5075 6177 4.724279 AAAATTGTACCTCCACTGGACT 57.276 40.909 0.00 0.00 0.00 3.85
5137 6239 6.765036 ACATCACTTAATCCAACTGCAGATAG 59.235 38.462 23.35 9.25 0.00 2.08
5153 6255 5.654603 ACTCCGACAATACACATCACTTA 57.345 39.130 0.00 0.00 0.00 2.24
5156 6258 5.234329 CCAATACTCCGACAATACACATCAC 59.766 44.000 0.00 0.00 0.00 3.06
5163 6265 2.158871 TGGCCCAATACTCCGACAATAC 60.159 50.000 0.00 0.00 0.00 1.89
5164 6266 2.120312 TGGCCCAATACTCCGACAATA 58.880 47.619 0.00 0.00 0.00 1.90
5165 6267 0.916086 TGGCCCAATACTCCGACAAT 59.084 50.000 0.00 0.00 0.00 2.71
5166 6268 0.035820 GTGGCCCAATACTCCGACAA 60.036 55.000 0.00 0.00 0.00 3.18
5167 6269 1.600107 GTGGCCCAATACTCCGACA 59.400 57.895 0.00 0.00 0.00 4.35
5168 6270 1.520787 CGTGGCCCAATACTCCGAC 60.521 63.158 0.00 0.00 0.00 4.79
5169 6271 2.727392 CCGTGGCCCAATACTCCGA 61.727 63.158 0.00 0.00 0.00 4.55
5170 6272 2.203015 CCGTGGCCCAATACTCCG 60.203 66.667 0.00 0.00 0.00 4.63
5171 6273 1.339644 TACCCGTGGCCCAATACTCC 61.340 60.000 0.00 0.00 0.00 3.85
5172 6274 0.106149 CTACCCGTGGCCCAATACTC 59.894 60.000 0.00 0.00 0.00 2.59
5173 6275 1.342672 CCTACCCGTGGCCCAATACT 61.343 60.000 0.00 0.00 0.00 2.12
5174 6276 1.147600 CCTACCCGTGGCCCAATAC 59.852 63.158 0.00 0.00 0.00 1.89
5175 6277 2.748513 GCCTACCCGTGGCCCAATA 61.749 63.158 0.00 0.00 44.32 1.90
5176 6278 4.123545 GCCTACCCGTGGCCCAAT 62.124 66.667 0.00 0.00 44.32 3.16
5187 6289 2.424733 GGACTCGGGTCAGCCTACC 61.425 68.421 18.98 0.00 43.77 3.18
5188 6290 0.106819 TAGGACTCGGGTCAGCCTAC 60.107 60.000 18.98 0.00 43.77 3.18
5189 6291 0.183014 CTAGGACTCGGGTCAGCCTA 59.817 60.000 18.98 9.48 43.77 3.93
5190 6292 1.076632 CTAGGACTCGGGTCAGCCT 60.077 63.158 18.98 8.71 43.77 4.58
5191 6293 2.128507 CCTAGGACTCGGGTCAGCC 61.129 68.421 18.98 0.00 43.77 4.85
5192 6294 1.076923 TCCTAGGACTCGGGTCAGC 60.077 63.158 18.98 0.00 43.77 4.26
5193 6295 0.752376 GGTCCTAGGACTCGGGTCAG 60.752 65.000 35.12 6.79 43.77 3.51
5194 6296 1.212934 AGGTCCTAGGACTCGGGTCA 61.213 60.000 35.12 0.00 43.77 4.02
5195 6297 0.033306 AAGGTCCTAGGACTCGGGTC 60.033 60.000 35.12 20.60 44.04 4.46
5196 6298 0.412640 AAAGGTCCTAGGACTCGGGT 59.587 55.000 35.12 17.20 44.04 5.28
5197 6299 1.112950 GAAAGGTCCTAGGACTCGGG 58.887 60.000 35.12 0.00 44.04 5.14
5198 6300 1.848652 TGAAAGGTCCTAGGACTCGG 58.151 55.000 35.12 0.00 44.04 4.63
5199 6301 3.090037 TCTTGAAAGGTCCTAGGACTCG 58.910 50.000 35.12 16.72 44.04 4.18
5200 6302 3.833070 TGTCTTGAAAGGTCCTAGGACTC 59.167 47.826 35.12 26.39 44.04 3.36
5201 6303 3.858135 TGTCTTGAAAGGTCCTAGGACT 58.142 45.455 35.12 20.22 44.04 3.85
5202 6304 4.678309 CGATGTCTTGAAAGGTCCTAGGAC 60.678 50.000 30.72 30.72 43.87 3.85
5203 6305 3.447586 CGATGTCTTGAAAGGTCCTAGGA 59.552 47.826 7.62 7.62 0.00 2.94
5204 6306 3.430929 CCGATGTCTTGAAAGGTCCTAGG 60.431 52.174 0.82 0.82 0.00 3.02
5205 6307 3.430929 CCCGATGTCTTGAAAGGTCCTAG 60.431 52.174 0.00 0.00 0.00 3.02
5206 6308 2.500098 CCCGATGTCTTGAAAGGTCCTA 59.500 50.000 0.00 0.00 0.00 2.94
5207 6309 1.279271 CCCGATGTCTTGAAAGGTCCT 59.721 52.381 0.00 0.00 0.00 3.85
5208 6310 1.679032 CCCCGATGTCTTGAAAGGTCC 60.679 57.143 0.00 0.00 0.00 4.46
5209 6311 1.739067 CCCCGATGTCTTGAAAGGTC 58.261 55.000 0.00 0.00 0.00 3.85
5210 6312 0.322546 GCCCCGATGTCTTGAAAGGT 60.323 55.000 0.00 0.00 0.00 3.50
5211 6313 0.322456 TGCCCCGATGTCTTGAAAGG 60.322 55.000 0.00 0.00 0.00 3.11
5212 6314 1.089920 CTGCCCCGATGTCTTGAAAG 58.910 55.000 0.00 0.00 0.00 2.62
5213 6315 0.322456 CCTGCCCCGATGTCTTGAAA 60.322 55.000 0.00 0.00 0.00 2.69
5214 6316 1.299648 CCTGCCCCGATGTCTTGAA 59.700 57.895 0.00 0.00 0.00 2.69
5215 6317 2.989639 CCTGCCCCGATGTCTTGA 59.010 61.111 0.00 0.00 0.00 3.02
5216 6318 2.825836 GCCTGCCCCGATGTCTTG 60.826 66.667 0.00 0.00 0.00 3.02
5217 6319 4.115199 GGCCTGCCCCGATGTCTT 62.115 66.667 0.00 0.00 0.00 3.01
5242 6344 3.997400 CTCCTGGGACTCGGCTCGA 62.997 68.421 0.00 0.00 0.00 4.04
5243 6345 3.522731 CTCCTGGGACTCGGCTCG 61.523 72.222 0.00 0.00 0.00 5.03
5244 6346 3.844090 GCTCCTGGGACTCGGCTC 61.844 72.222 0.00 0.00 0.00 4.70
5252 6354 0.624254 TCTTAGAGTCGCTCCTGGGA 59.376 55.000 0.00 0.00 0.00 4.37
5253 6355 0.741915 GTCTTAGAGTCGCTCCTGGG 59.258 60.000 0.00 0.00 0.00 4.45
5254 6356 1.464734 TGTCTTAGAGTCGCTCCTGG 58.535 55.000 3.66 0.00 0.00 4.45
5255 6357 2.733858 GCTTGTCTTAGAGTCGCTCCTG 60.734 54.545 3.66 0.00 0.00 3.86
5256 6358 1.474879 GCTTGTCTTAGAGTCGCTCCT 59.525 52.381 3.66 0.00 0.00 3.69
5257 6359 1.470112 GGCTTGTCTTAGAGTCGCTCC 60.470 57.143 3.66 0.00 0.00 4.70
5258 6360 1.795889 CGGCTTGTCTTAGAGTCGCTC 60.796 57.143 0.00 0.00 34.01 5.03
5259 6361 0.171455 CGGCTTGTCTTAGAGTCGCT 59.829 55.000 0.00 0.00 34.01 4.93
5260 6362 0.170561 TCGGCTTGTCTTAGAGTCGC 59.829 55.000 0.00 0.00 40.55 5.19
5261 6363 1.469308 ACTCGGCTTGTCTTAGAGTCG 59.531 52.381 0.00 0.00 42.00 4.18
5262 6364 3.139603 GACTCGGCTTGTCTTAGAGTC 57.860 52.381 7.94 7.94 46.95 3.36
5263 6365 1.819903 GGACTCGGCTTGTCTTAGAGT 59.180 52.381 6.68 0.00 43.88 3.24
5264 6366 1.135333 GGGACTCGGCTTGTCTTAGAG 59.865 57.143 6.68 0.00 35.04 2.43
5265 6367 1.183549 GGGACTCGGCTTGTCTTAGA 58.816 55.000 6.68 0.00 35.04 2.10
5266 6368 0.895530 TGGGACTCGGCTTGTCTTAG 59.104 55.000 6.68 0.00 35.04 2.18
5267 6369 0.895530 CTGGGACTCGGCTTGTCTTA 59.104 55.000 6.68 0.00 35.04 2.10
5268 6370 0.832135 TCTGGGACTCGGCTTGTCTT 60.832 55.000 6.68 0.00 35.04 3.01
5269 6371 1.228894 TCTGGGACTCGGCTTGTCT 60.229 57.895 6.68 0.00 35.04 3.41
5270 6372 1.079750 GTCTGGGACTCGGCTTGTC 60.080 63.158 0.00 0.00 0.00 3.18
5271 6373 2.932234 CGTCTGGGACTCGGCTTGT 61.932 63.158 0.00 0.00 0.00 3.16
5272 6374 2.125912 CGTCTGGGACTCGGCTTG 60.126 66.667 0.00 0.00 0.00 4.01
5273 6375 3.382832 CCGTCTGGGACTCGGCTT 61.383 66.667 0.00 0.00 38.47 4.35
5289 6391 2.507324 GCTTGTCTCGGAGTCGCC 60.507 66.667 4.69 0.00 36.13 5.54
5290 6392 2.507324 GGCTTGTCTCGGAGTCGC 60.507 66.667 4.69 3.87 36.13 5.19
5291 6393 2.202492 CGGCTTGTCTCGGAGTCG 60.202 66.667 4.69 0.00 34.48 4.18
5292 6394 1.153997 GTCGGCTTGTCTCGGAGTC 60.154 63.158 4.69 0.00 0.00 3.36
5293 6395 1.587933 GAGTCGGCTTGTCTCGGAGT 61.588 60.000 4.69 0.00 0.00 3.85
5294 6396 1.137825 GAGTCGGCTTGTCTCGGAG 59.862 63.158 0.00 0.00 0.00 4.63
5295 6397 2.341101 GGAGTCGGCTTGTCTCGGA 61.341 63.158 0.00 0.00 34.08 4.55
5296 6398 2.182030 GGAGTCGGCTTGTCTCGG 59.818 66.667 0.00 0.00 34.08 4.63
5297 6399 2.202492 CGGAGTCGGCTTGTCTCG 60.202 66.667 0.00 0.00 34.08 4.04
5298 6400 1.137825 CTCGGAGTCGGCTTGTCTC 59.862 63.158 0.00 0.00 36.95 3.36
5299 6401 2.995872 GCTCGGAGTCGGCTTGTCT 61.996 63.158 6.90 0.00 36.95 3.41
5300 6402 2.507324 GCTCGGAGTCGGCTTGTC 60.507 66.667 6.90 0.00 36.95 3.18
5301 6403 2.992114 AGCTCGGAGTCGGCTTGT 60.992 61.111 6.90 0.00 38.89 3.16
5302 6404 2.507992 CAGCTCGGAGTCGGCTTG 60.508 66.667 6.90 0.00 39.57 4.01
5303 6405 3.764466 CCAGCTCGGAGTCGGCTT 61.764 66.667 6.90 0.00 39.57 4.35
5305 6407 4.803426 CACCAGCTCGGAGTCGGC 62.803 72.222 6.90 0.00 38.63 5.54
5306 6408 3.062466 TCACCAGCTCGGAGTCGG 61.062 66.667 6.90 9.75 38.63 4.79
5307 6409 2.179517 GTCACCAGCTCGGAGTCG 59.820 66.667 6.90 0.00 38.63 4.18
5308 6410 1.939769 GAGGTCACCAGCTCGGAGTC 61.940 65.000 6.90 0.00 37.41 3.36
5309 6411 1.979693 GAGGTCACCAGCTCGGAGT 60.980 63.158 6.90 0.00 37.41 3.85
5310 6412 2.716017 GGAGGTCACCAGCTCGGAG 61.716 68.421 0.00 0.00 46.58 4.63
5311 6413 2.680352 GGAGGTCACCAGCTCGGA 60.680 66.667 0.00 0.00 46.58 4.55
5312 6414 2.997315 TGGAGGTCACCAGCTCGG 60.997 66.667 0.00 1.16 46.58 4.63
5325 6427 0.958091 CATAGTCGGCCTCTCTGGAG 59.042 60.000 0.00 0.00 38.35 3.86
5326 6428 0.468214 CCATAGTCGGCCTCTCTGGA 60.468 60.000 18.03 0.00 38.35 3.86
5327 6429 0.468214 TCCATAGTCGGCCTCTCTGG 60.468 60.000 17.26 17.26 39.35 3.86
5328 6430 0.958091 CTCCATAGTCGGCCTCTCTG 59.042 60.000 0.00 2.32 0.00 3.35
5329 6431 0.847373 TCTCCATAGTCGGCCTCTCT 59.153 55.000 0.00 0.00 0.00 3.10
5330 6432 1.243902 CTCTCCATAGTCGGCCTCTC 58.756 60.000 0.00 0.00 0.00 3.20
5331 6433 0.553819 ACTCTCCATAGTCGGCCTCT 59.446 55.000 0.00 1.36 0.00 3.69
5332 6434 0.955905 GACTCTCCATAGTCGGCCTC 59.044 60.000 0.00 0.00 36.80 4.70
5333 6435 3.119225 GACTCTCCATAGTCGGCCT 57.881 57.895 0.00 0.00 36.80 5.19
5338 6440 0.755698 TGGGCCGACTCTCCATAGTC 60.756 60.000 0.00 0.00 42.09 2.59
5339 6441 0.105453 ATGGGCCGACTCTCCATAGT 60.105 55.000 0.00 0.00 39.29 2.12
5340 6442 0.319728 CATGGGCCGACTCTCCATAG 59.680 60.000 0.00 0.00 39.07 2.23
5341 6443 0.105709 TCATGGGCCGACTCTCCATA 60.106 55.000 0.00 0.00 39.07 2.74
5342 6444 1.383109 TCATGGGCCGACTCTCCAT 60.383 57.895 0.00 0.00 41.53 3.41
5343 6445 2.038813 TCATGGGCCGACTCTCCA 59.961 61.111 0.00 0.00 34.79 3.86
5344 6446 2.060980 AGTCATGGGCCGACTCTCC 61.061 63.158 8.13 0.00 39.56 3.71
5345 6447 3.622514 AGTCATGGGCCGACTCTC 58.377 61.111 8.13 0.00 39.56 3.20
5348 6450 2.039624 AGGAGTCATGGGCCGACT 59.960 61.111 13.13 13.13 46.32 4.18
5349 6451 2.501610 GAGGAGTCATGGGCCGAC 59.498 66.667 0.00 0.45 0.00 4.79
5350 6452 2.764128 GGAGGAGTCATGGGCCGA 60.764 66.667 0.00 0.00 0.00 5.54
5351 6453 3.866582 GGGAGGAGTCATGGGCCG 61.867 72.222 0.00 0.00 0.00 6.13
5352 6454 2.367512 AGGGAGGAGTCATGGGCC 60.368 66.667 0.00 0.00 0.00 5.80
5353 6455 2.801631 CGAGGGAGGAGTCATGGGC 61.802 68.421 0.00 0.00 0.00 5.36
5354 6456 1.381872 ACGAGGGAGGAGTCATGGG 60.382 63.158 0.00 0.00 0.00 4.00
5355 6457 1.395826 GGACGAGGGAGGAGTCATGG 61.396 65.000 0.00 0.00 36.68 3.66
5356 6458 1.395826 GGGACGAGGGAGGAGTCATG 61.396 65.000 0.00 0.00 36.68 3.07
5357 6459 1.075896 GGGACGAGGGAGGAGTCAT 60.076 63.158 0.00 0.00 36.68 3.06
5358 6460 2.359404 GGGACGAGGGAGGAGTCA 59.641 66.667 0.00 0.00 36.68 3.41
5371 6473 2.482374 CACGTCGTACCTCGGGAC 59.518 66.667 0.00 0.00 40.32 4.46
5372 6474 2.747460 CCACGTCGTACCTCGGGA 60.747 66.667 0.00 0.00 40.32 5.14
5373 6475 3.818787 CCCACGTCGTACCTCGGG 61.819 72.222 0.00 0.00 40.32 5.14
5374 6476 3.818787 CCCCACGTCGTACCTCGG 61.819 72.222 0.00 0.00 40.32 4.63
5375 6477 1.745115 TACCCCACGTCGTACCTCG 60.745 63.158 0.00 3.36 41.41 4.63
5376 6478 1.803289 GTACCCCACGTCGTACCTC 59.197 63.158 0.00 0.00 30.69 3.85
5377 6479 2.040544 CGTACCCCACGTCGTACCT 61.041 63.158 0.00 0.00 45.82 3.08
5378 6480 2.485122 CGTACCCCACGTCGTACC 59.515 66.667 0.00 0.00 45.82 3.34
5386 6488 4.747529 GCCGTGACCGTACCCCAC 62.748 72.222 0.00 0.00 0.00 4.61
5419 6521 2.511600 CCGGCCCTTCGTAAGCAG 60.512 66.667 0.00 0.00 37.18 4.24
5420 6522 4.770874 GCCGGCCCTTCGTAAGCA 62.771 66.667 18.11 0.00 37.18 3.91
5421 6523 4.770874 TGCCGGCCCTTCGTAAGC 62.771 66.667 26.77 0.00 37.18 3.09
5422 6524 2.180204 CATGCCGGCCCTTCGTAAG 61.180 63.158 26.77 0.00 0.00 2.34
5423 6525 2.124901 CATGCCGGCCCTTCGTAA 60.125 61.111 26.77 1.65 0.00 3.18
5424 6526 4.169696 CCATGCCGGCCCTTCGTA 62.170 66.667 26.77 2.60 0.00 3.43
5433 6535 1.522355 CTCACTGTAGCCATGCCGG 60.522 63.158 0.00 0.00 38.11 6.13
5434 6536 2.176273 GCTCACTGTAGCCATGCCG 61.176 63.158 0.00 0.00 36.45 5.69
5435 6537 3.819188 GCTCACTGTAGCCATGCC 58.181 61.111 0.00 0.00 36.45 4.40
5441 6543 0.935366 GCGATACGGCTCACTGTAGC 60.935 60.000 0.00 0.00 40.95 3.58
5442 6544 0.663688 AGCGATACGGCTCACTGTAG 59.336 55.000 0.00 0.00 40.95 2.74
5443 6545 0.380733 CAGCGATACGGCTCACTGTA 59.619 55.000 0.00 0.00 42.53 2.74
5444 6546 1.139734 CAGCGATACGGCTCACTGT 59.860 57.895 0.00 0.00 42.53 3.55
5445 6547 1.589993 CCAGCGATACGGCTCACTG 60.590 63.158 0.00 0.00 42.53 3.66
5446 6548 1.320344 TTCCAGCGATACGGCTCACT 61.320 55.000 0.00 0.00 42.53 3.41
5447 6549 0.872021 CTTCCAGCGATACGGCTCAC 60.872 60.000 0.00 0.00 42.53 3.51
5448 6550 1.035385 TCTTCCAGCGATACGGCTCA 61.035 55.000 0.00 0.00 42.53 4.26
5449 6551 0.315568 ATCTTCCAGCGATACGGCTC 59.684 55.000 0.00 0.00 42.53 4.70
5450 6552 0.315568 GATCTTCCAGCGATACGGCT 59.684 55.000 0.00 0.00 46.13 5.52
5451 6553 0.315568 AGATCTTCCAGCGATACGGC 59.684 55.000 0.00 0.00 0.00 5.68
5452 6554 1.068194 GGAGATCTTCCAGCGATACGG 60.068 57.143 0.00 0.00 46.01 4.02
5453 6555 2.339728 GGAGATCTTCCAGCGATACG 57.660 55.000 0.00 0.00 46.01 3.06
5462 6564 2.731374 CCTCGCCGGAGATCTTCC 59.269 66.667 8.83 0.00 43.27 3.46
5463 6565 2.731374 CCCTCGCCGGAGATCTTC 59.269 66.667 8.83 0.00 43.27 2.87
5464 6566 2.840102 CCCCTCGCCGGAGATCTT 60.840 66.667 8.83 0.00 43.27 2.40
5493 6595 3.711059 GAGGTCAGGGCAGGCATGG 62.711 68.421 8.98 0.00 0.00 3.66
5494 6596 2.124403 GAGGTCAGGGCAGGCATG 60.124 66.667 1.37 1.37 0.00 4.06
5495 6597 2.611800 TGAGGTCAGGGCAGGCAT 60.612 61.111 0.00 0.00 0.00 4.40
5496 6598 3.324930 CTGAGGTCAGGGCAGGCA 61.325 66.667 0.00 0.00 40.20 4.75
5497 6599 4.792804 GCTGAGGTCAGGGCAGGC 62.793 72.222 9.03 0.00 43.94 4.85
5498 6600 1.687146 TAGCTGAGGTCAGGGCAGG 60.687 63.158 9.03 0.00 43.94 4.85
5499 6601 1.260538 TGTAGCTGAGGTCAGGGCAG 61.261 60.000 9.03 0.00 43.94 4.85
5500 6602 1.229177 TGTAGCTGAGGTCAGGGCA 60.229 57.895 9.03 0.00 43.94 5.36
5501 6603 1.261238 ACTGTAGCTGAGGTCAGGGC 61.261 60.000 9.03 0.00 43.94 5.19
5502 6604 0.534412 CACTGTAGCTGAGGTCAGGG 59.466 60.000 9.03 7.27 43.94 4.45
5503 6605 0.108424 GCACTGTAGCTGAGGTCAGG 60.108 60.000 9.03 0.00 43.94 3.86
5504 6606 0.457509 CGCACTGTAGCTGAGGTCAG 60.458 60.000 0.00 2.37 46.40 3.51
5505 6607 1.586541 CGCACTGTAGCTGAGGTCA 59.413 57.895 0.00 0.00 0.00 4.02
5506 6608 1.807573 GCGCACTGTAGCTGAGGTC 60.808 63.158 0.30 0.00 0.00 3.85
5507 6609 2.262915 GCGCACTGTAGCTGAGGT 59.737 61.111 0.30 0.00 0.00 3.85
5508 6610 2.510238 GGCGCACTGTAGCTGAGG 60.510 66.667 10.83 0.00 0.00 3.86
5509 6611 2.097038 GTGGCGCACTGTAGCTGAG 61.097 63.158 10.83 0.00 0.00 3.35
5510 6612 2.048222 GTGGCGCACTGTAGCTGA 60.048 61.111 10.83 0.00 0.00 4.26
5511 6613 3.481903 CGTGGCGCACTGTAGCTG 61.482 66.667 10.83 0.00 31.34 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.